Sat May 18 19:02:24 UTC 2024 I: starting to build r-bioc-cner/trixie/i386 on jenkins on '2024-05-18 19:02' Sat May 18 19:02:24 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_15/19446/console.log Sat May 18 19:02:24 UTC 2024 I: Downloading source for trixie/r-bioc-cner=1.38.0+dfsg-2 --2024-05-18 19:02:24-- http://deb.debian.org/debian/pool/main/r/r-bioc-cner/r-bioc-cner_1.38.0%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2397 (2.3K) [text/prs.lines.tag] Saving to: ‘r-bioc-cner_1.38.0+dfsg-2.dsc’ 0K .. 100% 305M=0s 2024-05-18 19:02:24 (305 MB/s) - ‘r-bioc-cner_1.38.0+dfsg-2.dsc’ saved [2397/2397] Sat May 18 19:02:24 UTC 2024 I: r-bioc-cner_1.38.0+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: r-bioc-cner Binary: r-bioc-cner Architecture: any Version: 1.38.0+dfsg-2 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/CNEr/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-cner Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-cner.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biostrings, r-cran-dbi, r-cran-rsqlite, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-rtracklayer, r-bioc-xvector, r-bioc-genomicalignments, r-bioc-s4vectors, r-bioc-iranges, r-cran-readr, r-bioc-biocgenerics, r-cran-reshape2, r-cran-ggplot2, r-cran-powerlaw, r-bioc-annotate, r-bioc-go.db, r-cran-r.utils, r-bioc-keggrest Package-List: r-bioc-cner deb gnu-r optional arch=any Checksums-Sha1: b2f231a6d930d0af2fa8170789c1660dd1045b62 7747924 r-bioc-cner_1.38.0+dfsg.orig.tar.xz c7eafe703d0c7b925e8e8f9e6a9cc1732e3c392c 4884 r-bioc-cner_1.38.0+dfsg-2.debian.tar.xz Checksums-Sha256: 774fb2ac1cde200e81d8102714fa6a6bd0e46d8bbb725b4d6e054f188e1d6d51 7747924 r-bioc-cner_1.38.0+dfsg.orig.tar.xz b69103c36682c1522ca00a30550a681ad422e9baee56eb44e3f705081c2c554e 4884 r-bioc-cner_1.38.0+dfsg-2.debian.tar.xz Files: c08cc61ff7ee07d2cf3f8721f3c85e35 7747924 r-bioc-cner_1.38.0+dfsg.orig.tar.xz 356fe41661568da1cc56b45bf715281d 4884 r-bioc-cner_1.38.0+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmV/GFsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFxxA//fJ6U+f3arf8tPJPqLD86/V8vCvlcDH+G GVcCkTqjrjDNoEThfJOsUoPr6jZCpNScrLSyMvbpxCxF3JhTte49pO9aq162KtVJ R0v13P9HL8eMiMDTzZovto1iNlXSz7EtsAAjGIWHNaG86JctTfmKTvUW4NzLcZpr jwuH9UklkwCr4IVOFeRoPp1I4SEO2x2+Twy5tg/PhZag/yrwD2Jbhf3gM4XTU4gr BCp6UcPWJKeeFI3DF+t2zTpboFpRDk6AJVtNqmAlxhnI5iXSQtHPk2KuODCnJHhX 6LnFWOlj8MsLPGEwpEHtT/3Gdd5WEry/+bBDIavp8zGuKKjyFsdnWlSZW+E7VVgl yWeGKAsk6fRm59ji8kVzCSOZAOFiqoR4CpGm9DRgiKcn+BiIcUCAUdAlfL7jH44v UOWygwsBmN7U6toDG9JCMCwcIzDt6mbh/e197aZpjpTeNDcfM3ng3lJQJVlL+1fd RnlXZHazjdjS4PmYmLq7MYSTz79bSllgpmVgIecRhFSGx1Rig7YMLVxojvtPpLEP UJQOHL5oOml1UgEidtmthSb3h29O2v5v22aGfroNLDlflkEsSlymAb2tDW3oa+HT OXsp1McRO0eCIijsr8Ht9NABizZm7QsectdKiEJYW0cQ5rpGL2Hvzes3FhUJoWlL 7Qjq/odLLJw= =ZAK/ -----END PGP SIGNATURE----- Sat May 18 19:02:24 UTC 2024 I: Checking whether the package is not for us Sat May 18 19:02:24 UTC 2024 I: Starting 1st build on remote node infom07-i386.debian.net. Sat May 18 19:02:24 UTC 2024 I: Preparing to do remote build '1' on infom07-i386.debian.net. Sat May 18 19:02:44 UTC 2024 I: Deleting $TMPDIR on infom07-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat May 18 07:02:27 -12 2024 I: pbuilder-time-stamp: 1716058947 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-cner_1.38.0+dfsg-2.dsc] I: copying [./r-bioc-cner_1.38.0+dfsg.orig.tar.xz] I: copying [./r-bioc-cner_1.38.0+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Dec 17 15:48:43 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-cner_1.38.0+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-cner in r-bioc-cner-1.38.0+dfsg dpkg-source: info: unpacking r-bioc-cner_1.38.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-cner_1.38.0+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Fix_autopkgtest.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/32408/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='28b83cec1ace417a878b33532cbf2674' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='32408' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3daAGhU5/pbuilderrc_shhX --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3daAGhU5/b1 --logfile b1/build.log r-bioc-cner_1.38.0+dfsg-2.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom07-i386 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 17 14:57 /bin -> usr/bin I: user script /srv/workspace/pbuilder/32408/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biostrings, r-cran-dbi, r-cran-rsqlite, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-rtracklayer, r-bioc-xvector, r-bioc-genomicalignments, r-bioc-s4vectors, r-bioc-iranges, r-cran-readr, r-bioc-biocgenerics, r-cran-reshape2, r-cran-ggplot2, r-cran-powerlaw, r-bioc-annotate, r-bioc-go.db, r-cran-r.utils, r-bioc-keggrest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19685 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biostrings; however: Package r-bioc-biostrings is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dbi; however: Package r-cran-dbi is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rsqlite; however: Package r-cran-rsqlite is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomeinfodb; however: Package r-bioc-genomeinfodb is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges; however: Package r-bioc-genomicranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rtracklayer; however: Package r-bioc-rtracklayer is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-xvector; however: Package r-bioc-xvector is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicalignments; however: Package r-bioc-genomicalignments is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors; however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges; however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-cran-readr; however: Package r-cran-readr is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics; however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-cran-reshape2; however: Package r-cran-reshape2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-powerlaw; however: Package r-cran-powerlaw is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-annotate; however: Package r-bioc-annotate is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-go.db; however: Package r-bioc-go.db is not installed. pbuilder-satisfydepends-dummy depends on r-cran-r.utils; however: Package r-cran-r.utils is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-keggrest; however: Package r-bioc-keggrest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-13{a} gfortran-13-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-13-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} littler{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base{a} r-base-core{a} r-base-dev{a} r-bioc-annotate{a} r-bioc-annotationdbi{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-biostrings{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicranges{a} r-bioc-go.db{a} r-bioc-iranges{a} r-bioc-keggrest{a} r-bioc-s4vectors{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-askpass{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-blob{a} r-cran-boot{a} r-cran-cachem{a} r-cran-class{a} r-cran-cli{a} r-cran-clipr{a} r-cran-cluster{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-curl{a} r-cran-dbi{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-foreign{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gtable{a} r-cran-hms{a} r-cran-httr{a} r-cran-isoband{a} r-cran-jsonlite{a} r-cran-kernsmooth{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-nnet{a} r-cran-openssl{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-plyr{a} r-cran-png{a} r-cran-powerlaw{a} r-cran-pracma{a} r-cran-prettyunits{a} r-cran-progress{a} r-cran-r.methodss3{a} r-cran-r.oo{a} r-cran-r.utils{a} r-cran-r6{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcurl{a} r-cran-readr{a} r-cran-reshape2{a} r-cran-rlang{a} r-cran-rpart{a} r-cran-rsqlite{a} r-cran-scales{a} r-cran-spatial{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-survival{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tidyselect{a} r-cran-tzdb{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-vroom{a} r-cran-withr{a} r-cran-xml{a} r-cran-xtable{a} r-recommended{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-base-html r-cran-abind r-cran-bench r-cran-brio r-cran-callr r-cran-covr r-cran-data.table r-cran-dbitest r-cran-decor r-cran-desc r-cran-dichromat r-cran-digest r-cran-doparallel r-cran-dplyr r-cran-foreach r-cran-formattable r-cran-fs r-cran-generics r-cran-gert r-cran-gh r-cran-hexbin r-cran-hmisc r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-iterators r-cran-itertools r-cran-jpeg r-cran-knitr r-cran-later r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-mapproj r-cran-maps r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-pkgdown r-cran-processx r-cran-profvis r-cran-ps r-cran-quadprog r-cran-quantreg r-cran-r.rsp r-cran-ragg r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-rvest r-cran-sf r-cran-sodium r-cran-spelling r-cran-svglite r-cran-testthat r-cran-tidyverse r-cran-unitizer r-cran-usethis r-cran-vdiffr r-cran-waldo r-cran-webutils r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 282 newly installed, 0 to remove and 0 not upgraded. Need to get 225 MB of archives. After unpacking 565 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-rtracklayer which is a virtual package and is not provided by any available package Depends: r-bioc-genomicalignments which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-13{a} gfortran-13-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-13-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} littler{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base{a} r-base-core{a} r-base-dev{a} r-bioc-annotate{a} r-bioc-annotationdbi{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-biostrings{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicranges{a} r-bioc-go.db{a} r-bioc-iranges{a} r-bioc-keggrest{a} r-bioc-s4vectors{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-askpass{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-blob{a} r-cran-boot{a} r-cran-cachem{a} r-cran-class{a} r-cran-cli{a} r-cran-clipr{a} r-cran-cluster{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-curl{a} r-cran-dbi{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-foreign{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gtable{a} r-cran-hms{a} r-cran-httr{a} r-cran-isoband{a} r-cran-jsonlite{a} r-cran-kernsmooth{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-nnet{a} r-cran-openssl{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-plyr{a} r-cran-png{a} r-cran-powerlaw{a} r-cran-pracma{a} r-cran-prettyunits{a} r-cran-progress{a} r-cran-r.methodss3{a} r-cran-r.oo{a} r-cran-r.utils{a} r-cran-r6{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcurl{a} r-cran-readr{a} r-cran-reshape2{a} r-cran-rlang{a} r-cran-rpart{a} r-cran-rsqlite{a} r-cran-scales{a} r-cran-spatial{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-survival{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tidyselect{a} r-cran-tzdb{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-vroom{a} r-cran-withr{a} r-cran-xml{a} r-cran-xtable{a} r-recommended{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-base-html r-cran-abind r-cran-bench r-cran-brio r-cran-callr r-cran-covr r-cran-data.table r-cran-dbitest r-cran-decor r-cran-desc r-cran-dichromat r-cran-digest r-cran-doparallel r-cran-dplyr r-cran-foreach r-cran-formattable r-cran-fs r-cran-generics r-cran-gert r-cran-gh r-cran-hexbin r-cran-hmisc r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-iterators r-cran-itertools r-cran-jpeg r-cran-knitr r-cran-later r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-mapproj r-cran-maps r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-pkgdown r-cran-processx r-cran-profvis r-cran-ps r-cran-quadprog r-cran-quantreg r-cran-r.rsp r-cran-ragg r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-rvest r-cran-sf r-cran-sodium r-cran-spelling r-cran-svglite r-cran-testthat r-cran-tidyverse r-cran-unitizer r-cran-usethis r-cran-vdiffr r-cran-waldo r-cran-webutils r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 282 newly installed, 0 to remove and 0 not upgraded. Need to get 225 MB of archives. After unpacking 565 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/32408 and its subdirectories Sat May 18 19:02:45 UTC 2024 W: No second build log, what happened? Sat May 18 19:02:45 UTC 2024 W: Downloading the build dependencies failed Sat May 18 19:02:45 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Sat May 18 19:02:45 UTC 2024 W: Network problems are automatically rescheduled after some hours.