Tue Apr 2 21:04:49 UTC 2024 I: starting to build q2cli/trixie/i386 on jenkins on '2024-04-02 21:04' Tue Apr 2 21:04:49 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_11/4660/console.log Tue Apr 2 21:04:49 UTC 2024 I: Downloading source for trixie/q2cli=2022.11.1-2 --2024-04-02 21:04:49-- http://deb.debian.org/debian/pool/main/q/q2cli/q2cli_2022.11.1-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2157 (2.1K) [text/prs.lines.tag] Saving to: ‘q2cli_2022.11.1-2.dsc’ 0K .. 100% 347M=0s 2024-04-02 21:04:49 (347 MB/s) - ‘q2cli_2022.11.1-2.dsc’ saved [2157/2157] Tue Apr 2 21:04:49 UTC 2024 I: q2cli_2022.11.1-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: q2cli Binary: q2cli Architecture: all Version: 2022.11.1-2 Maintainer: Debian Med Packaging Team Uploaders: Liubov Chuprikova , Étienne Mollier Homepage: https://qiime2.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/q2cli Vcs-Git: https://salsa.debian.org/med-team/q2cli.git Testsuite: autopkgtest Testsuite-Triggers: file, python3-sklearn, q2-sample-classifier Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-pytest , python3-setuptools, qiime (>= 2022.11.1), python3-click Package-List: q2cli deb science optional arch=all Checksums-Sha1: 0196e3b89e4da42ceab93b9ad4837afb14a58017 290677 q2cli_2022.11.1.orig.tar.gz 0cb49efcd94af489e88540d07f3d5240458ee9b8 7776 q2cli_2022.11.1-2.debian.tar.xz Checksums-Sha256: 68bf70d291ec9a444fb62f0a1730c1dc4a2671682e1765fe0fe2a78802b79db5 290677 q2cli_2022.11.1.orig.tar.gz b04bdfb79d966f535bdec2bf32bcece40991ed89d5d965f71a70ebf6105d0a0c 7776 q2cli_2022.11.1-2.debian.tar.xz Files: 6aed890248085274f4d88daef52c9ff4 290677 q2cli_2022.11.1.orig.tar.gz 1089e0a5554adf991733bf2cccdd289d 7776 q2cli_2022.11.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPQGcIRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGV+hAAkRVKKIrVS05lZvdZTB4eR3oIvswgSvYo DKqzbnjaUZSI8cq8T96L/gzdd57gbMDUsBMDv90458cZtlKDBq+Qhpu+/fKbuXT+ ge1CP7IuWQ9lG8/LT1miEYLJUsKi9oiQEQTz3wKAA2bCDQOqhGfj5VGXNYe2zzPq gRb5N2KFkq/kR6osgBjnQE+4mtQ+98adjerC1tfev4xhY16ziyNCfODvX89nOdmC DxH0R2YvgqSQAbKIeP4334nA6lSYz3ZNinIAIqZ9GbXtBcXl2wSLMD/RqB47JVEu vBDPDVropY7dVXCOuSbN9TC/ZrxWN93x6jp1w7wU5pcaCBHG9R9Lo9wJSTbEPB3N yMKO1uxiWD7ZGpcqsuGFblxMvKO8ZTGw+Ziti8MuJV1qUaOd1IZjHerETYUADB5c 1LI2Wn6I5O7MzY7l4BazfUSrK0vglo8iEID4LDFWFyLJDHnPtp/Ee3cUVy5Rt5aX cSds3T2vllIMk+2pZtis7AU2zI9AU6IDBqt3bAectsKu4zurM8uf505bemXHYEMk 3OTmsTkOmfaLJBZigoKSJQfFP6RlZi8x/8Ho329XjAGjaRECyQUT0y+N+ipraO1B 7qNqTfp7vSea9Ns8RpZ6nRpnfI0SBA8zo451CXs78tRNmVa7SrRiETFWEORwF9Nj 7y90T1yZV4A= =4XOP -----END PGP SIGNATURE----- Tue Apr 2 21:04:49 UTC 2024 I: Checking whether the package is not for us Tue Apr 2 21:04:49 UTC 2024 I: Starting 1st build on remote node ionos6-i386.debian.net. Tue Apr 2 21:04:49 UTC 2024 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Tue Apr 2 21:06:16 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 5 15:27:52 -12 2025 I: pbuilder-time-stamp: 1746502072 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [q2cli_2022.11.1-2.dsc] I: copying [./q2cli_2022.11.1.orig.tar.gz] I: copying [./q2cli_2022.11.1-2.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Jan 24 17:47:46 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./q2cli_2022.11.1-2.dsc: no acceptable signature found dpkg-source: info: extracting q2cli in q2cli-2022.11.1 dpkg-source: info: unpacking q2cli_2022.11.1.orig.tar.gz dpkg-source: info: unpacking q2cli_2022.11.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying call_py3.patch dpkg-source: info: applying inform_zsh_users_howto_set_autocompletion.patch dpkg-source: info: applying bash-completion-with-hashbang.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/8541/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='aee150199e964d6ea71a2c6c518b46f0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='8541' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iiQMjh57/pbuilderrc_PyWY --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iiQMjh57/b1 --logfile b1/build.log q2cli_2022.11.1-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos6-i386 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 5 17:48 /bin -> usr/bin I: user script /srv/workspace/pbuilder/8541/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-pytest, python3-setuptools, qiime (>= 2022.11.1), python3-click dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19876 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on qiime (>= 2022.11.1); however: Package qiime is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-glyphicons-halflings{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} javascript-common{a} libarchive-zip-perl{a} libblas3{a} libbsd0{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} libjs-bootstrap{a} libjs-jquery{a} libjs-popper.js{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libnorm1{a} libpgm-5.3-0{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8{a} libsodium23{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} libxslt1.1{a} libyaml-0-2{a} libzmq5{a} m4{a} man-db{a} media-types{a} netbase{a} node-fortawesome-fontawesome-free{a} openssl{a} po-debconf{a} python3{a} python3-appdirs{a} python3-bcrypt{a} python3-bibtexparser{a} python3-blinker{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-cryptography{a} python3-dateutil{a} python3-decorator{a} python3-dill{a} python3-distutils{a} python3-flask{a} python3-flask-sqlalchemy{a} python3-flufl.lock{a} python3-globus-sdk{a} python3-greenlet{a} python3-idna{a} python3-iniconfig{a} python3-itsdangerous{a} python3-jinja2{a} python3-jwt{a} python3-lib2to3{a} python3-lxml{a} python3-markupsafe{a} python3-minimal{a} python3-nacl{a} python3-networkx{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-paramiko{a} python3-parsl{a} python3-pkg-resources{a} python3-pluggy{a} python3-psutil{a} python3-public{a} python3-py{a} python3-pyparsing{a} python3-pytest{a} python3-requests{a} python3-setproctitle{a} python3-setuptools{a} python3-six{a} python3-sqlalchemy{a} python3-tblib{a} python3-tomlkit{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-tzlocal{a} python3-urllib3{a} python3-werkzeug{a} python3-yaml{a} python3-zmq{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} qiime{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx node-jquery python3-asgiref python3-babel python3-bottleneck python3-bs4 python3-cssselect python3-dotenv python3-gdal python3-html5lib python3-invoke python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-openssl python3-pydot python3-pygments python3-pygraphviz python3-pyinotify python3-scipy python3-simplejson python3-sqlalchemy-ext python3-tables q2-feature-table q2-quality-filter q2-types q2cli q2templates r-cran-plotly wget 0 packages upgraded, 125 newly installed, 0 to remove and 0 not upgraded. Need to get 65.0 MB of archives. After unpacking 312 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.11-minimal i386 3.11.8-1 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.5.0-2+b2 [104 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 python3.11-minimal i386 3.11.8-1 [2087 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.11.6-1 [26.2 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2024a-1 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-3 [69.1 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libreadline8 i386 8.2-3+b1 [171 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libpython3.11-stdlib i386 3.11.8-1 [1821 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 python3.11 i386 3.11.8-1 [597 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.11.6-1 [9224 B] Get: 13 http://deb.debian.org/debian trixie/main i386 python3 i386 3.11.6-1 [26.2 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.2-1 [807 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.2-1 [2244 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 openssl i386 3.1.5-1 [1246 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20240203 [158 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-2+b1 [314 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libmagic1 i386 1:5.45-2+b1 [114 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-2+b1 [43.0 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-3 [1195 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.39.3-6 [93.3 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-1+b2 [39.6 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.0-3 [1413 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 40 http://deb.debian.org/debian trixie/main i386 libelf1 i386 0.190-1+b1 [182 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1 [118 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b2 [727 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 python3-lib2to3 all 3.11.5-1 [77.5 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 python3-distutils all 3.11.5-1 [131 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 68.1.2-2 [468 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20240310 [106 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 javascript-common all 11+nmu1 [6260 B] Get: 55 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.0-3 [140 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libbsd0 i386 0.12.2-1 [134 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14-20240201-3 [733 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.0-3 [2167 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libnorm1 i386 1.5.9+dfsg-3 [237 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libpgm-5.3-0 i386 5.3.128~dfsg-2 [168 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.2-1 [1927 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libsodium23 i386 1.0.18-1 [186 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libxslt1.1 i386 1.1.35-1 [253 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libyaml-0-2 i386 0.2.5-1 [55.9 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libzmq5 i386 4.3.5-1+b1 [306 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 node-fortawesome-fontawesome-free all 6.4.2+ds1-1 [1472 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 python3-cffi-backend i386 1.16.0-2+b1 [114 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 python3-bcrypt i386 3.2.2-1 [35.0 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 python3-pyparsing all 3.1.1-1 [145 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 python3-bibtexparser all 2.0.0b5+really1.4.1-1 [34.2 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 python3-blinker all 1.7.0-1 [15.5 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 python3-certifi all 2023.11.17-1 [155 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 python3-colorama all 0.4.6-4 [36.2 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 python3-click all 8.1.7-1 [94.0 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 python3-cryptography i386 41.0.7-4 [809 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 python3-six all 1.16.0-6 [16.3 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 python3-dateutil all 2.9.0-2 [79.4 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 python3-decorator all 5.1.1-5 [15.1 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 python3-dill all 0.3.8-1 [81.7 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 python3-itsdangerous all 2.1.2-4 [17.1 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 python3-markupsafe i386 2.1.5-1 [14.4 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 python3-jinja2 all 3.1.3-1 [119 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 python3-werkzeug all 3.0.2-1 [206 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 python3-flask all 3.0.2-1 [104 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 python3-greenlet i386 3.0.1-3 [181 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 python3-sqlalchemy all 1.4.50+ds1-1 [1009 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 python3-flask-sqlalchemy all 3.0.3-1 [35.5 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 python3-psutil i386 5.9.8-2 [226 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 python3-public all 4.0-2 [6844 B] Get: 96 http://deb.debian.org/debian trixie/main i386 python3-typing-extensions all 4.10.0-1 [66.2 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 python3-flufl.lock all 5.0.1-5 [14.4 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 python3-jwt all 2.7.0-1 [29.7 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 python3-idna all 3.6-2 [37.0 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 python3-urllib3 all 1.26.18-2 [116 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 python3-globus-sdk all 3.39.0-1 [235 kB] Get: 103 http://deb.debian.org/debian trixie/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 104 http://deb.debian.org/debian trixie/main i386 python3-lxml i386 5.1.0-1 [2065 kB] Get: 105 http://deb.debian.org/debian trixie/main i386 python3-nacl i386 1.5.0-4 [54.1 kB] Get: 106 http://deb.debian.org/debian trixie/main i386 python3-networkx all 2.8.8-2 [1425 kB] Get: 107 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.2-1 [653 kB] Get: 108 http://deb.debian.org/debian trixie/main i386 python3-numpy i386 1:1.24.2-2 [4879 kB] Get: 109 http://deb.debian.org/debian trixie/main i386 python3-packaging all 23.2-1 [44.8 kB] Get: 110 http://deb.debian.org/debian trixie/main i386 python3-tz all 2024.1-2 [30.9 kB] Get: 111 http://deb.debian.org/debian trixie/main i386 python3-pandas-lib i386 2.1.4+dfsg-5 [7492 kB] Get: 112 http://deb.debian.org/debian trixie/main i386 python3-pandas all 2.1.4+dfsg-5 [3015 kB] Get: 113 http://deb.debian.org/debian trixie/main i386 python3-paramiko all 2.12.0-2 [133 kB] Get: 114 http://deb.debian.org/debian trixie/main i386 python3-setproctitle i386 1.3.3-1+b1 [20.0 kB] Get: 115 http://deb.debian.org/debian trixie/main i386 python3-tblib all 3.0.0-4 [13.5 kB] Get: 116 http://deb.debian.org/debian trixie/main i386 python3-typeguard all 4.1.5-1 [35.0 kB] Get: 117 http://deb.debian.org/debian trixie/main i386 python3-py all 1.11.0-2 [88.7 kB] Get: 118 http://deb.debian.org/debian trixie/main i386 python3-zmq i386 24.0.1-5+b1 [362 kB] Get: 119 http://deb.debian.org/debian trixie/main i386 python3-parsl all 2024.03.11+ds-1 [264 kB] Get: 120 http://deb.debian.org/debian trixie/main i386 python3-pluggy all 1.4.0-1 [26.2 kB] Get: 121 http://deb.debian.org/debian trixie/main i386 python3-pytest all 7.4.4-3 [239 kB] Get: 122 http://deb.debian.org/debian trixie/main i386 python3-tomlkit all 0.12.4-1 [41.7 kB] Get: 123 http://deb.debian.org/debian trixie/main i386 python3-tzlocal all 5.2-1.1 [23.7 kB] Get: 124 http://deb.debian.org/debian trixie/main i386 python3-yaml i386 6.0.1-2 [176 kB] Get: 125 http://deb.debian.org/debian trixie/main i386 qiime all 2024.2.0-1 [304 kB] Fetched 65.0 MB in 1s (50.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19876 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.8-1_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.8-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.5.0-2+b2_i386.deb ... Unpacking libexpat1:i386 (2.5.0-2+b2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.8-1_i386.deb ... Unpacking python3.11-minimal (3.11.8-1) ... Setting up libpython3.11-minimal:i386 (3.11.8-1) ... Setting up libexpat1:i386 (2.5.0-2+b2) ... Setting up python3.11-minimal (3.11.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20193 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.6-1_i386.deb ... Unpacking python3-minimal (3.11.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-1_all.deb ... Unpacking tzdata (2024a-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-3_all.deb ... Unpacking readline-common (8.2-3) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../5-libreadline8_8.2-3+b1_i386.deb ... Unpacking libreadline8:i386 (8.2-3+b1) ... Selecting previously unselected package libpython3.11-stdlib:i386. Preparing to unpack .../6-libpython3.11-stdlib_3.11.8-1_i386.deb ... Unpacking libpython3.11-stdlib:i386 (3.11.8-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.8-1_i386.deb ... Unpacking python3.11 (3.11.8-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../8-libpython3-stdlib_3.11.6-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.11.6-1) ... Setting up python3-minimal (3.11.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21181 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.6-1_i386.deb ... Unpacking python3 (3.11.6-1) ... Selecting previously unselected package libpython3.12-minimal:i386. Preparing to unpack .../001-libpython3.12-minimal_3.12.2-1_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.2-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../002-python3.12-minimal_3.12.2-1_i386.deb ... Unpacking python3.12-minimal (3.12.2-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../004-openssl_3.1.5-1_i386.deb ... Unpacking openssl (3.1.5-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../005-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../007-libmagic1_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic1:i386 (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.45-2+b1_i386.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../010-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../011-groff-base_1.23.0-3_i386.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../012-bsdextrautils_2.39.3-6_i386.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../013-libpipeline1_1.5.7-1+b2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1+b2) ... Selecting previously unselected package man-db. Preparing to unpack .../014-man-db_2.12.0-3_i386.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../015-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../016-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../017-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../018-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../019-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../020-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../021-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../022-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../023-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../024-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../025-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../026-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../027-libelf1_0.190-1+b1_i386.deb ... Unpacking libelf1:i386 (0.190-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../028-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../029-libicu72_72.1-4+b1_i386.deb ... Unpacking libicu72:i386 (72.1-4+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../030-libxml2_2.9.14+dfsg-1.3+b2_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../031-gettext_0.21-14+b1_i386.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../034-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../035-python3-lib2to3_3.11.5-1_all.deb ... Unpacking python3-lib2to3 (3.11.5-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../036-python3-distutils_3.11.5-1_all.deb ... Unpacking python3-distutils (3.11.5-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../037-python3-pkg-resources_68.1.2-2_all.deb ... Unpacking python3-pkg-resources (68.1.2-2) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../038-python3-setuptools_68.1.2-2_all.deb ... Unpacking python3-setuptools (68.1.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../039-dh-python_6.20240310_all.deb ... Unpacking dh-python (6.20240310) ... Selecting previously unselected package fonts-glyphicons-halflings. Preparing to unpack .../040-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Selecting previously unselected package javascript-common. Preparing to unpack .../041-javascript-common_11+nmu1_all.deb ... Unpacking javascript-common (11+nmu1) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../042-libblas3_3.12.0-3_i386.deb ... Unpacking libblas3:i386 (3.12.0-3) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../043-libbsd0_0.12.2-1_i386.deb ... Unpacking libbsd0:i386 (0.12.2-1) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../044-libgfortran5_14-20240201-3_i386.deb ... Unpacking libgfortran5:i386 (14-20240201-3) ... Selecting previously unselected package libjs-bootstrap. Preparing to unpack .../045-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../046-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-popper.js. Preparing to unpack .../047-libjs-popper.js_1.16.1+ds-6_all.deb ... Unpacking libjs-popper.js (1.16.1+ds-6) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../048-liblapack3_3.12.0-3_i386.deb ... Unpacking liblapack3:i386 (3.12.0-3) ... Selecting previously unselected package libnorm1:i386. Preparing to unpack .../049-libnorm1_1.5.9+dfsg-3_i386.deb ... Unpacking libnorm1:i386 (1.5.9+dfsg-3) ... Selecting previously unselected package libpgm-5.3-0:i386. Preparing to unpack .../050-libpgm-5.3-0_5.3.128~dfsg-2_i386.deb ... Unpacking libpgm-5.3-0:i386 (5.3.128~dfsg-2) ... Selecting previously unselected package libpython3.12-stdlib:i386. Preparing to unpack .../051-libpython3.12-stdlib_3.12.2-1_i386.deb ... Unpacking libpython3.12-stdlib:i386 (3.12.2-1) ... Selecting previously unselected package libsodium23:i386. Preparing to unpack .../052-libsodium23_1.0.18-1_i386.deb ... Unpacking libsodium23:i386 (1.0.18-1) ... Selecting previously unselected package libxslt1.1:i386. Preparing to unpack .../053-libxslt1.1_1.1.35-1_i386.deb ... Unpacking libxslt1.1:i386 (1.1.35-1) ... Selecting previously unselected package libyaml-0-2:i386. Preparing to unpack .../054-libyaml-0-2_0.2.5-1_i386.deb ... Unpacking libyaml-0-2:i386 (0.2.5-1) ... Selecting previously unselected package libzmq5:i386. Preparing to unpack .../055-libzmq5_4.3.5-1+b1_i386.deb ... Unpacking libzmq5:i386 (4.3.5-1+b1) ... Selecting previously unselected package node-fortawesome-fontawesome-free. Preparing to unpack .../056-node-fortawesome-fontawesome-free_6.4.2+ds1-1_all.deb ... Unpacking node-fortawesome-fontawesome-free (6.4.2+ds1-1) ... Selecting previously unselected package python3-appdirs. Preparing to unpack .../057-python3-appdirs_1.4.4-4_all.deb ... Unpacking python3-appdirs (1.4.4-4) ... Selecting previously unselected package python3-cffi-backend:i386. Preparing to unpack .../058-python3-cffi-backend_1.16.0-2+b1_i386.deb ... Unpacking python3-cffi-backend:i386 (1.16.0-2+b1) ... Selecting previously unselected package python3-bcrypt. Preparing to unpack .../059-python3-bcrypt_3.2.2-1_i386.deb ... Unpacking python3-bcrypt (3.2.2-1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../060-python3-pyparsing_3.1.1-1_all.deb ... Unpacking python3-pyparsing (3.1.1-1) ... Selecting previously unselected package python3-bibtexparser. Preparing to unpack .../061-python3-bibtexparser_2.0.0b5+really1.4.1-1_all.deb ... Unpacking python3-bibtexparser (2.0.0b5+really1.4.1-1) ... Selecting previously unselected package python3-blinker. Preparing to unpack .../062-python3-blinker_1.7.0-1_all.deb ... Unpacking python3-blinker (1.7.0-1) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../063-python3-certifi_2023.11.17-1_all.deb ... Unpacking python3-certifi (2023.11.17-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../064-python3-chardet_5.2.0+dfsg-1_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-1) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../065-python3-charset-normalizer_3.3.2-1_all.deb ... Unpacking python3-charset-normalizer (3.3.2-1) ... Selecting previously unselected package python3-colorama. Preparing to unpack .../066-python3-colorama_0.4.6-4_all.deb ... 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Setting up bsdextrautils (2.39.3-6) ... Setting up libjs-popper.js (1.16.1+ds-6) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:i386 (0.2.5-1) ... Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Setting up libpgm-5.3-0:i386 (5.3.128~dfsg-2) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libnorm1:i386 (1.5.9+dfsg-3) ... Setting up libpython3.12-minimal:i386 (3.12.2-1) ... Setting up libmagic1:i386 (1:5.45-2+b1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up node-fortawesome-fontawesome-free (6.4.2+ds1-1) ... Setting up tzdata (2024a-1) ... Current default time zone: 'Etc/UTC' Local time is now: Tue May 6 03:28:14 UTC 2025. Universal Time is now: Tue May 6 03:28:14 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up autopoint (0.21-14) ... Setting up libgfortran5:i386 (14-20240201-3) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.1.5-1) ... Setting up libbsd0:i386 (0.12.2-1) ... Setting up libelf1:i386 (0.190-1+b1) ... Setting up readline-common (8.2-3) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b2) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.2-1) ... Setting up liblapack3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.21-14+b1) ... Setting up libzmq5:i386 (4.3.5-1+b1) ... Setting up libtool (2.4.7-7) ... Setting up libreadline8:i386 (8.2-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libxslt1.1:i386 (1.1.35-1) ... Setting up libpython3.12-stdlib:i386 (3.12.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:i386 (3.11.8-1) ... Setting up python3.12 (3.12.2-1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:i386 (3.11.6-1) ... Setting up python3.11 (3.11.8-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.6-1) ... Setting up python3-markupsafe (2.1.5-1) ... Setting up python3-psutil (5.9.8-2) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (23.2-1) ... Setting up python3-pyparsing (3.1.1-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-werkzeug (3.0.2-1) ... Setting up python3-dill (0.3.8-1) ... Setting up python3-greenlet (3.0.1-3) ... Setting up python3-setproctitle:i386 (1.3.3-1+b1) ... Setting up python3-idna (3.6-2) ... Setting up python3-typing-extensions (4.10.0-1) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-pluggy (1.4.0-1) ... Setting up python3-lxml:i386 (5.1.0-1) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-bibtexparser (2.0.0b5+really1.4.1-1) ... /usr/lib/python3/dist-packages/bibtexparser/latexenc.py:93: SyntaxWarning: invalid escape sequence '\g' string = re.sub('([^{]|^)([A-Z])([^}]|$)', '\g<1>{\g<2>}\g<3>', string) Setting up python3-tzlocal (5.2-1.1) ... Setting up python3-tomlkit (0.12.4-1) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-cffi-backend:i386 (1.16.0-2+b1) ... Setting up python3-blinker (1.7.0-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-tblib (3.0.0-4) ... Setting up python3-py (1.11.0-2) ... Setting up python3-jwt (2.7.0-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-public (4.0-2) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-pytest (7.4.4-3) ... Setting up python3-bcrypt (3.2.2-1) ... Setting up python3-typeguard (4.1.5-1) ... Setting up python3-itsdangerous (2.1.2-4) ... Setting up python3-yaml (6.0.1-2) ... Setting up python3-click (8.1.7-1) ... Setting up python3-networkx (2.8.8-2) ... /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:556: SyntaxWarning: invalid octal escape sequence '\420' "graph [edge [ source u'u\4200' target u'u\4200' ] " /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:557: SyntaxWarning: invalid octal escape sequence '\420' + "node [ id u'u\4200' label b ] ]" Setting up python3-sqlalchemy (1.4.50+ds1-1) ... Setting up python3-flufl.lock (5.0.1-5) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-zmq (24.0.1-5+b1) ... Setting up python3-cryptography (41.0.7-4) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up python3-numpy (1:1.24.2-2) ... Setting up python3-nacl (1.5.0-4) ... Setting up python3-globus-sdk (3.39.0-1) ... Setting up dh-python (6.20240310) ... Setting up python3-flask (3.0.2-1) ... Setting up python3-pandas-lib:i386 (2.1.4+dfsg-5) ... Setting up python3-pandas (2.1.4+dfsg-5) ... Setting up python3-paramiko (2.12.0-2) ... Setting up python3-flask-sqlalchemy (3.0.3-1) ... Setting up python3-parsl (2024.03.11+ds-1) ... Setting up qiime (2024.2.0-1) ... Processing triggers for libc-bin (2.37-15) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/q2cli-2022.11.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../q2cli_2022.11.1-2_source.changes dpkg-buildpackage: info: source package q2cli dpkg-buildpackage: info: source version 2022.11.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:305: python3.11 setup.py clean running clean removing '/build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:305: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:305: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli copying q2cli/util.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli copying q2cli/_version.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli copying q2cli/__main__.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli copying q2cli/commands.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli copying q2cli/__init__.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli creating /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/core copying q2cli/core/cache.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/core copying q2cli/core/usage.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/core copying q2cli/core/completion.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/core copying q2cli/core/state.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/core copying q2cli/core/config.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/core copying q2cli/core/__init__.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/core creating /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/builtin copying q2cli/builtin/info.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/builtin copying q2cli/builtin/tools.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/builtin copying q2cli/builtin/__init__.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/builtin copying q2cli/builtin/dev.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/builtin creating /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/tests copying q2cli/tests/test_cache_cli.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/tests copying q2cli/tests/test_cli.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/tests copying q2cli/tests/test_dev.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/tests copying q2cli/tests/test_core.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/tests copying q2cli/tests/test_tools.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/tests copying q2cli/tests/__init__.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/tests copying q2cli/tests/test_mystery_stew.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/tests copying q2cli/tests/test_usage.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/tests creating /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/click copying q2cli/click/option.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/click copying q2cli/click/type.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/click copying q2cli/click/parser.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/click copying q2cli/click/__init__.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/click copying q2cli/click/command.py -> /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/click running egg_info creating q2cli.egg-info writing q2cli.egg-info/PKG-INFO writing dependency_links to q2cli.egg-info/dependency_links.txt writing entry points to q2cli.egg-info/entry_points.txt writing top-level names to q2cli.egg-info/top_level.txt writing manifest file 'q2cli.egg-info/SOURCES.txt' reading manifest file 'q2cli.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'q2cli.egg-info/SOURCES.txt' UPDATING /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/_version.py set /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build/q2cli/_version.py to '2022.11.1' running build_scripts creating build creating build/scripts-3.11 copying bin/tab-qiime -> build/scripts-3.11 changing mode of build/scripts-3.11/tab-qiime from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:305: cd /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build; python3.11 -m pytest --ignore=q2cli/tests/test_usage.py ============================= test session starts ============================== platform linux -- Python 3.11.8, pytest-7.4.4, pluggy-1.4.0 rootdir: /build/reproducible-path/q2cli-2022.11.1 plugins: typeguard-4.1.5 collected 149 items q2cli/tests/test_cache_cli.py FFFFFFFFFFFFFFFF [ 10%] q2cli/tests/test_cli.py FF.F.FFFFF..FF..FFFFFFFFFFFFFFFFFFFFFFFFF [ 38%] q2cli/tests/test_core.py ......FF...F [ 46%] q2cli/tests/test_dev.py ............. [ 55%] q2cli/tests/test_mystery_stew.py s [ 55%] q2cli/tests/test_tools.py .............................F................ [ 86%] .......FFFFFFFFFFFFF [100%] =================================== FAILURES =================================== _________________ TestCacheCli.test_artifact_as_metadata_cache _________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cache_cli.py:29: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ____________ TestCacheCli.test_artifact_as_metadata_cache_bad_cache ____________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cache_cli.py:29: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _____________ TestCacheCli.test_artifact_as_metadata_cache_bad_key _____________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cache_cli.py:29: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ____________________ TestCacheCli.test_colon_in_cache_path _____________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cache_cli.py:29: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _______________ TestCacheCli.test_colon_in_input_path_not_cache ________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cache_cli.py:29: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ________________ TestCacheCli.test_colon_in_out_path_not_cache _________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cache_cli.py:29: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _____________________ TestCacheCli.test_inputs_from_cache ______________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cache_cli.py:29: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ________________________ TestCacheCli.test_inputs_split ________________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cache_cli.py:29: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. __________________ TestCacheCli.test_invalid_cache_path_input __________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cache_cli.py:29: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _________________ TestCacheCli.test_invalid_cache_path_output __________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cache_cli.py:29: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ___________________ TestCacheCli.test_nonexistent_input_key ____________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cache_cli.py:29: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ____________________ TestCacheCli.test_output_dir_as_cache _____________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cache_cli.py:29: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _____________________ TestCacheCli.test_output_key_invalid _____________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cache_cli.py:29: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ______________________ TestCacheCli.test_output_to_cache _______________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cache_cli.py:29: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _______________________ TestCacheCli.test_outputs_split ________________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cache_cli.py:29: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ______________________ TestCacheCli.test_outputs_to_cache ______________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cache_cli.py:29: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _____________________ CliTests.test_action_parameter_types _____________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def test_action_parameter_types(self): qiime_cli = RootCommand() > command = qiime_cli.get_command(ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:77: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ______________________ CliTests.test_deprecated_help_text ______________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def test_deprecated_help_text(self): qiime_cli = RootCommand() > command = qiime_cli.get_command(ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:333: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ______________________________ CliTests.test_info ______________________________ self = def test_info(self): result = self.runner.invoke(info) > self.assertEqual(result.exit_code, 0) E AssertionError: 1 != 0 q2cli/tests/test_cli.py:49: AssertionError _________________________ CliTests.test_list_commands __________________________ self = def test_list_commands(self): # top level commands, including a plugin, are present qiime_cli = RootCommand() > commands = qiime_cli.list_commands(ctx=None) q2cli/tests/test_cli.py:59: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:92: in list_commands plugins = sorted(self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ______________________ CliTests.test_plugin_list_commands ______________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def test_plugin_list_commands(self): # plugin commands are present including a method and visualizer qiime_cli = RootCommand() > command = qiime_cli.get_command(ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:67: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _________________________ CliTests.test_qza_extension __________________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def test_qza_extension(self): qiime_cli = RootCommand() > command = qiime_cli.get_command(ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:235: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _________________________ CliTests.test_qzv_extension __________________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def test_qzv_extension(self): qiime_cli = RootCommand() > command = qiime_cli.get_command(ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:260: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ________________ CliTests.test_run_deprecated_gets_warning_msg _________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def test_run_deprecated_gets_warning_msg(self): qiime_cli = RootCommand() > command = qiime_cli.get_command(ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:343: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ___________________________ CliTests.test_split_ints ___________________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def test_split_ints(self): qiime_cli = RootCommand() > command = qiime_cli.get_command(ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:152: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ______________________ CliTests.test_syntax_error_in_env _______________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def test_syntax_error_in_env(self): qiime_cli = RootCommand() > command = qiime_cli.get_command(ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:317: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ________________________ CliTests.test_variadic_inputs _________________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def test_variadic_inputs(self): qiime_cli = RootCommand() > command = qiime_cli.get_command(ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:179: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ____________________ CliTests.test_verbose_shows_stacktrace ____________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def test_verbose_shows_stacktrace(self): qiime_cli = RootCommand() > command = qiime_cli.get_command(ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:279: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ______________________ CliTests.test_with_parameters_only ______________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def test_with_parameters_only(self): qiime_cli = RootCommand() > command = qiime_cli.get_command(ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:206: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. __________________ CliTests.test_without_inputs_or_parameters __________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def test_without_inputs_or_parameters(self): qiime_cli = RootCommand() > command = qiime_cli.get_command(ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:221: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _______ TestOptionalArtifactSupport.test_all_optional_artifacts_provided _______ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:366: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _______ TestOptionalArtifactSupport.test_no_optional_artifacts_provided ________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:366: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _______ TestOptionalArtifactSupport.test_one_optional_artifact_provided ________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:366: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _______ TestOptionalArtifactSupport.test_optional_artifact_type_mismatch _______ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:366: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _______________ TestMetadataSupport.test_invalid_metadata_merge ________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:432: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. __________________ TestMetadataSupport.test_multiple_metadata __________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:432: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ______________ TestMetadataSupport.test_optional_metadata_missing ______________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:432: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ______________ TestMetadataSupport.test_required_metadata_missing ______________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:432: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ___________________ TestMetadataSupport.test_single_metadata ___________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:432: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ____________ TestMetadataSupport.test_single_metadata_alt_id_header ____________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:432: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. __________ TestMetadataColumnSupport.test_categorical_metadata_column __________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:432: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ___ TestMetadataColumnSupport.test_categorical_metadata_column_type_mismatch ___ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:432: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _______________ TestMetadataColumnSupport.test_multiple_metadata _______________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:432: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ___________ TestMetadataColumnSupport.test_multiple_metadata_column ____________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:432: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ____________ TestMetadataColumnSupport.test_numeric_metadata_column ____________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:432: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _____ TestMetadataColumnSupport.test_numeric_metadata_column_type_mismatch _____ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:432: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _______ TestMetadataColumnSupport.test_optional_column_without_metadata ________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:432: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ___________ TestMetadataColumnSupport.test_optional_metadata_missing ___________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:432: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _______ TestMetadataColumnSupport.test_optional_metadata_without_column ________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:432: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _______________ TestMetadataColumnSupport.test_required_missing ________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:432: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ________________ TestMetadataColumnSupport.test_single_metadata ________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_cli.py:432: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _____________________ TestOption.test_repeated_action_flag _____________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def test_repeated_action_flag(self): qiime_cli = RootCommand() > command = qiime_cli.get_command(ctx=None, name='dummy-plugin') q2cli/tests/test_core.py:62: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ____________________ TestOption.test_repeated_action_option ____________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def test_repeated_action_option(self): qiime_cli = RootCommand() > command = qiime_cli.get_command(ctx=None, name='dummy-plugin') q2cli/tests/test_core.py:87: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ___________________ TestOption.test_repeated_multiple_option ___________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def test_repeated_multiple_option(self): input_path = os.path.join(self.tempdir, 'ints.qza') artifact = Artifact.import_data(IntSequence1, [0, 42, 43], list) artifact.save(input_path) metadata_path1 = os.path.join(self.tempdir, 'metadata1.tsv') with open(metadata_path1, 'w') as f: f.write('id\tcol1\nid1\tfoo\nid2\tbar\n') metadata_path2 = os.path.join(self.tempdir, 'metadata2.tsv') with open(metadata_path2, 'w') as f: f.write('id\tcol2\nid1\tbaz\nid2\tbaa\n') output_path = os.path.join(self.tempdir, 'out.qza') qiime_cli = RootCommand() > command = qiime_cli.get_command(ctx=None, name='dummy-plugin') q2cli/tests/test_core.py:111: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ____________________ TestInspectMetadata.test_visualization ____________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def test_visualization(self): # make a viz first: qiime_cli = RootCommand() > command = qiime_cli.get_command(ctx=None, name='dummy-plugin') q2cli/tests/test_tools.py:197: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. __________________ TestExportToFileFormat.test_visualization ___________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def test_visualization(self): # make a viz first: qiime_cli = RootCommand() > command = qiime_cli.get_command(ctx=None, name='dummy-plugin') q2cli/tests/test_tools.py:197: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _______________________ TestCacheTools.test_cache_create _______________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_tools.py:457: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _______________________ TestCacheTools.test_cache_fetch ________________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_tools.py:457: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _________________ TestCacheTools.test_cache_garbage_collection _________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_tools.py:457: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _______________________ TestCacheTools.test_cache_remove _______________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_tools.py:457: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _____________________ TestCacheTools.test_cache_roundtrip ______________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_tools.py:457: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _______________________ TestCacheTools.test_cache_status _______________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_tools.py:457: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _______________________ TestCacheTools.test_cache_store ________________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): get_dummy_plugin() self.runner = CliRunner() > self.plugin_command = RootCommand().get_command( ctx=None, name='dummy-plugin') q2cli/tests/test_tools.py:457: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ___________________ TestPeek.test_artifact_and_visualization ___________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): self.runner = CliRunner() self.tempdir = tempfile.mkdtemp(prefix='qiime2-q2cli-test-temp-') # create artifact self.artifact = os.path.join(self.tempdir, 'artifact.qza') Artifact.import_data( 'Mapping', {'foo': 'bar'}).save(self.artifact) # create visualization qiime_cli = RootCommand() > command = qiime_cli.get_command(ctx=None, name='dummy-plugin') q2cli/tests/test_tools.py:670: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. _______________________ TestPeek.test_multiple_file_tsv ________________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): self.runner = CliRunner() self.tempdir = tempfile.mkdtemp(prefix='qiime2-q2cli-test-temp-') # create artifact self.artifact = os.path.join(self.tempdir, 'artifact.qza') Artifact.import_data( 'Mapping', {'foo': 'bar'}).save(self.artifact) # create visualization qiime_cli = RootCommand() > command = qiime_cli.get_command(ctx=None, name='dummy-plugin') q2cli/tests/test_tools.py:670: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ________________________ TestPeek.test_single_artifact _________________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): self.runner = CliRunner() self.tempdir = tempfile.mkdtemp(prefix='qiime2-q2cli-test-temp-') # create artifact self.artifact = os.path.join(self.tempdir, 'artifact.qza') Artifact.import_data( 'Mapping', {'foo': 'bar'}).save(self.artifact) # create visualization qiime_cli = RootCommand() > command = qiime_cli.get_command(ctx=None, name='dummy-plugin') q2cli/tests/test_tools.py:670: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ________________________ TestPeek.test_single_file_tsv _________________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): self.runner = CliRunner() self.tempdir = tempfile.mkdtemp(prefix='qiime2-q2cli-test-temp-') # create artifact self.artifact = os.path.join(self.tempdir, 'artifact.qza') Artifact.import_data( 'Mapping', {'foo': 'bar'}).save(self.artifact) # create visualization qiime_cli = RootCommand() > command = qiime_cli.get_command(ctx=None, name='dummy-plugin') q2cli/tests/test_tools.py:670: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. ______________________ TestPeek.test_single_visualization ______________________ self = , ctx = None, name = 'dummy-plugin' def get_command(self, ctx, name): if name in self._builtin_commands: return self._builtin_commands[name] try: > plugin = self._plugin_lookup[name] q2cli/commands.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError During handling of the above exception, another exception occurred: self = def setUp(self): self.runner = CliRunner() self.tempdir = tempfile.mkdtemp(prefix='qiime2-q2cli-test-temp-') # create artifact self.artifact = os.path.join(self.tempdir, 'artifact.qza') Artifact.import_data( 'Mapping', {'foo': 'bar'}).save(self.artifact) # create visualization qiime_cli = RootCommand() > command = qiime_cli.get_command(ctx=None, name='dummy-plugin') q2cli/tests/test_tools.py:670: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ q2cli/commands.py:104: in get_command possibilities = get_close_matches(name, self._plugin_lookup) q2cli/commands.py:76: in _plugin_lookup import q2cli.core.cache q2cli/core/cache.py:285: in CACHE = DeploymentCache() q2cli/core/cache.py:61: in __init__ self._state = self._get_cached_state(refresh=refresh) q2cli/core/cache.py:107: in _get_cached_state self._cache_current_state(current_requirements) q2cli/core/cache.py:205: in _cache_current_state state = self._get_current_state() q2cli/core/cache.py:255: in _get_current_state state['plugins'][name] = self._get_plugin_state(plugin) q2cli/core/cache.py:264: in _get_plugin_state state['actions'][id]['epilog'] = self._get_action_epilog(action) q2cli/core/cache.py:276: in _get_action_epilog example(use) /usr/lib/python3/dist-packages/qiime2/core/testing/examples.py:246: in collection_list_of_ints ints = use.init_artifact_collection('ints', artifact_collection_factory) /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:952: in init_artifact_collection return self._usage_variable(name, factory, 'artifact_collection') /usr/lib/python3/dist-packages/qiime2/sdk/usage.py:826: in _usage_variable var_name = variable.to_interface_name() q2cli/core/usage.py:68: in to_interface_name cli_name = '%s%s' % (self.name, self.ext) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = @property def ext(self): > return self.EXT[self.var_type] E KeyError: 'artifact_collection' q2cli/core/usage.py:58: KeyError ----------------------------- Captured stderr call ----------------------------- QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment. =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:13 /usr/lib/python3/dist-packages/qiime2/core/archive/provenance.py:13: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources ../../../../../../usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871 /usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('flufl')`. Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages declare_namespace(pkg) .pybuild/cpython3_3.11/build/q2cli/tests/test_tools.py: 40 warnings /usr/lib/python3/dist-packages/qiime2/metadata/metadata.py:1289: FutureWarning: the convert_dtype parameter is deprecated and will be removed in a future version. Do ``ser.astype(object).apply()`` instead if you want ``convert_dtype=False``. norm_series = series.apply(normalize, convert_dtype=False) .pybuild/cpython3_3.11/build/q2cli/tests/test_tools.py::TestCastMetadata::test_complete_successful_run .pybuild/cpython3_3.11/build/q2cli/tests/test_tools.py::TestCastMetadata::test_complete_successful_run .pybuild/cpython3_3.11/build/q2cli/tests/test_tools.py::TestCastMetadata::test_extra_columns_removed .pybuild/cpython3_3.11/build/q2cli/tests/test_tools.py::TestCastMetadata::test_extra_columns_removed .pybuild/cpython3_3.11/build/q2cli/tests/test_tools.py::TestCastMetadata::test_write_to_stdout .pybuild/cpython3_3.11/build/q2cli/tests/test_tools.py::TestCastMetadata::test_write_to_stdout /usr/lib/python3/dist-packages/qiime2/metadata/io.py:418: FutureWarning: DataFrame.applymap has been deprecated. Use DataFrame.map instead. df = df.applymap(self._format) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ FAILED q2cli/tests/test_cache_cli.py::TestCacheCli::test_artifact_as_metadata_cache FAILED q2cli/tests/test_cache_cli.py::TestCacheCli::test_artifact_as_metadata_cache_bad_cache FAILED q2cli/tests/test_cache_cli.py::TestCacheCli::test_artifact_as_metadata_cache_bad_key FAILED q2cli/tests/test_cache_cli.py::TestCacheCli::test_colon_in_cache_path FAILED q2cli/tests/test_cache_cli.py::TestCacheCli::test_colon_in_input_path_not_cache FAILED q2cli/tests/test_cache_cli.py::TestCacheCli::test_colon_in_out_path_not_cache FAILED q2cli/tests/test_cache_cli.py::TestCacheCli::test_inputs_from_cache - ... FAILED q2cli/tests/test_cache_cli.py::TestCacheCli::test_inputs_split - KeyEr... FAILED q2cli/tests/test_cache_cli.py::TestCacheCli::test_invalid_cache_path_input FAILED q2cli/tests/test_cache_cli.py::TestCacheCli::test_invalid_cache_path_output FAILED q2cli/tests/test_cache_cli.py::TestCacheCli::test_nonexistent_input_key FAILED q2cli/tests/test_cache_cli.py::TestCacheCli::test_output_dir_as_cache FAILED q2cli/tests/test_cache_cli.py::TestCacheCli::test_output_key_invalid FAILED q2cli/tests/test_cache_cli.py::TestCacheCli::test_output_to_cache - Ke... FAILED q2cli/tests/test_cache_cli.py::TestCacheCli::test_outputs_split - KeyE... FAILED q2cli/tests/test_cache_cli.py::TestCacheCli::test_outputs_to_cache - K... FAILED q2cli/tests/test_cli.py::CliTests::test_action_parameter_types - KeyEr... FAILED q2cli/tests/test_cli.py::CliTests::test_deprecated_help_text - KeyErro... FAILED q2cli/tests/test_cli.py::CliTests::test_info - AssertionError: 1 != 0 FAILED q2cli/tests/test_cli.py::CliTests::test_list_commands - KeyError: 'art... FAILED q2cli/tests/test_cli.py::CliTests::test_plugin_list_commands - KeyErro... FAILED q2cli/tests/test_cli.py::CliTests::test_qza_extension - KeyError: 'art... FAILED q2cli/tests/test_cli.py::CliTests::test_qzv_extension - KeyError: 'art... FAILED q2cli/tests/test_cli.py::CliTests::test_run_deprecated_gets_warning_msg FAILED q2cli/tests/test_cli.py::CliTests::test_split_ints - KeyError: 'artifa... FAILED q2cli/tests/test_cli.py::CliTests::test_syntax_error_in_env - KeyError... FAILED q2cli/tests/test_cli.py::CliTests::test_variadic_inputs - KeyError: 'a... FAILED q2cli/tests/test_cli.py::CliTests::test_verbose_shows_stacktrace - Key... FAILED q2cli/tests/test_cli.py::CliTests::test_with_parameters_only - KeyErro... FAILED q2cli/tests/test_cli.py::CliTests::test_without_inputs_or_parameters FAILED q2cli/tests/test_cli.py::TestOptionalArtifactSupport::test_all_optional_artifacts_provided FAILED q2cli/tests/test_cli.py::TestOptionalArtifactSupport::test_no_optional_artifacts_provided FAILED q2cli/tests/test_cli.py::TestOptionalArtifactSupport::test_one_optional_artifact_provided FAILED q2cli/tests/test_cli.py::TestOptionalArtifactSupport::test_optional_artifact_type_mismatch FAILED q2cli/tests/test_cli.py::TestMetadataSupport::test_invalid_metadata_merge FAILED q2cli/tests/test_cli.py::TestMetadataSupport::test_multiple_metadata FAILED q2cli/tests/test_cli.py::TestMetadataSupport::test_optional_metadata_missing FAILED q2cli/tests/test_cli.py::TestMetadataSupport::test_required_metadata_missing FAILED q2cli/tests/test_cli.py::TestMetadataSupport::test_single_metadata - K... FAILED q2cli/tests/test_cli.py::TestMetadataSupport::test_single_metadata_alt_id_header FAILED q2cli/tests/test_cli.py::TestMetadataColumnSupport::test_categorical_metadata_column FAILED q2cli/tests/test_cli.py::TestMetadataColumnSupport::test_categorical_metadata_column_type_mismatch FAILED q2cli/tests/test_cli.py::TestMetadataColumnSupport::test_multiple_metadata FAILED q2cli/tests/test_cli.py::TestMetadataColumnSupport::test_multiple_metadata_column FAILED q2cli/tests/test_cli.py::TestMetadataColumnSupport::test_numeric_metadata_column FAILED q2cli/tests/test_cli.py::TestMetadataColumnSupport::test_numeric_metadata_column_type_mismatch FAILED q2cli/tests/test_cli.py::TestMetadataColumnSupport::test_optional_column_without_metadata FAILED q2cli/tests/test_cli.py::TestMetadataColumnSupport::test_optional_metadata_missing FAILED q2cli/tests/test_cli.py::TestMetadataColumnSupport::test_optional_metadata_without_column FAILED q2cli/tests/test_cli.py::TestMetadataColumnSupport::test_required_missing FAILED q2cli/tests/test_cli.py::TestMetadataColumnSupport::test_single_metadata FAILED q2cli/tests/test_core.py::TestOption::test_repeated_action_flag - KeyE... FAILED q2cli/tests/test_core.py::TestOption::test_repeated_action_option - Ke... FAILED q2cli/tests/test_core.py::TestOption::test_repeated_multiple_option - ... FAILED q2cli/tests/test_tools.py::TestInspectMetadata::test_visualization - K... FAILED q2cli/tests/test_tools.py::TestExportToFileFormat::test_visualization FAILED q2cli/tests/test_tools.py::TestCacheTools::test_cache_create - KeyErro... FAILED q2cli/tests/test_tools.py::TestCacheTools::test_cache_fetch - KeyError... FAILED q2cli/tests/test_tools.py::TestCacheTools::test_cache_garbage_collection FAILED q2cli/tests/test_tools.py::TestCacheTools::test_cache_remove - KeyErro... FAILED q2cli/tests/test_tools.py::TestCacheTools::test_cache_roundtrip - KeyE... FAILED q2cli/tests/test_tools.py::TestCacheTools::test_cache_status - KeyErro... FAILED q2cli/tests/test_tools.py::TestCacheTools::test_cache_store - KeyError... FAILED q2cli/tests/test_tools.py::TestPeek::test_artifact_and_visualization FAILED q2cli/tests/test_tools.py::TestPeek::test_multiple_file_tsv - KeyError... FAILED q2cli/tests/test_tools.py::TestPeek::test_single_artifact - KeyError: ... FAILED q2cli/tests/test_tools.py::TestPeek::test_single_file_tsv - KeyError: ... FAILED q2cli/tests/test_tools.py::TestPeek::test_single_visualization - KeyEr... ============ 68 failed, 80 passed, 1 skipped, 48 warnings in 15.57s ============ E: pybuild pybuild:389: test: plugin distutils failed with: exit code=1: cd /build/reproducible-path/q2cli-2022.11.1/.pybuild/cpython3_3.11/build; python3.11 -m pytest --ignore=q2cli/tests/test_usage.py dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13 make: *** [debian/rules:11: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/8541 and its subdirectories Tue Apr 2 21:06:17 UTC 2024 W: No second build log, what happened?