Tue Apr 2 14:15:11 UTC 2024 I: starting to build python-pauvre/trixie/i386 on jenkins on '2024-04-02 14:15' Tue Apr 2 14:15:11 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_6/17734/console.log Tue Apr 2 14:15:11 UTC 2024 I: Downloading source for trixie/python-pauvre=0.2.3-3 --2024-04-02 14:15:11-- http://deb.debian.org/debian/pool/main/p/python-pauvre/python-pauvre_0.2.3-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2485 (2.4K) [text/prs.lines.tag] Saving to: ‘python-pauvre_0.2.3-3.dsc’ 0K .. 100% 360M=0s 2024-04-02 14:15:11 (360 MB/s) - ‘python-pauvre_0.2.3-3.dsc’ saved [2485/2485] Tue Apr 2 14:15:11 UTC 2024 I: python-pauvre_0.2.3-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pauvre Binary: python3-pauvre Architecture: all Version: 0.2.3-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/conchoecia/pauvre Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/python-pauvre Vcs-Git: https://salsa.debian.org/med-team/python-pauvre.git Testsuite: autopkgtest Testsuite-Triggers: python3-nanoget-examples Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-matplotlib , python3-biopython , python3-pandas , python3-numpy , python3-scipy , python3-sklearn , python3-tk , python3-progressbar Package-List: python3-pauvre deb python optional arch=all Checksums-Sha1: 7842280d5f38d93bd4794c5b7fc33bce8db3033a 61853 python-pauvre_0.2.3.orig.tar.gz 974a2bffae4cdb08f394e4a63b0e5ac404f43035 7968 python-pauvre_0.2.3-3.debian.tar.xz Checksums-Sha256: ba756bc9025ae7edafd91092d12a57864f018958fd46b548e9eeda7167ee197d 61853 python-pauvre_0.2.3.orig.tar.gz c57d35449f74a4a3a2dc2c8c0769042ce874d6850515284d895d3fe2ef61e606 7968 python-pauvre_0.2.3-3.debian.tar.xz Files: c703cada35c529447e375d0868d63c8f 61853 python-pauvre_0.2.3.orig.tar.gz aa77ed6e4897ac1ff7522f0c2ef99bb1 7968 python-pauvre_0.2.3-3.debian.tar.xz Dgit: aa7639e3efe8a930e90df1d3bc6550963075feb9 debian archive/debian/0.2.3-3 https://git.dgit.debian.org/python-pauvre -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmT438kUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpsTxAAyGhGvlZ30hwrMsBRNxRIzGpnK3Tr WRZluVZHhHtXTjxS6BFWUckgPnLQdTNbci+VjWvbUxHavv0Ab5llVAWbXsRNXYJf FXEGjsbkvNTEo9OdYouD1GjBo7JvQ/8NWdIcTpgBARU5QhXWPaBHXnv/wo1qs1Vu dfVN7gAL4OKVNlgIPDCAgOTcwt+KUb0pXb4sBu2h/Mb8OL9oYuna+HqXhfIq1ab6 YhZVC/lJl7C4X8s5m/eEdvhvV1t8PXNQJdmzd5Vi+g49zRRFz3zki9Xmg/e6kLph wzmD/qs0EAIQTf//s6lIXG8qqYWsbmaQN+Z+sp0T6z8oBsXxLsmSjhRLQnDISVbi rooDSVHrrpbCPmdSmqsUiZC7hVGW5BVpnhd+KyTejVmgPW/Wra9VVNtsV4hVA/na MyxvQYheE/h2XGOKz5FwlnDiGTMt00ZkuaRmus2ShyvUrImT32YbjcBPUvnh+sWO DmP/QJ0e625zFKaM/K/TWhfP6BOp2Z/b7lOFSPfLEOQgx0D0AuPM+r0kLcNPwnkG 01W+pv1MOb5/ZpCZ5LluKrCmasnWEnWfb6zwiYr42rC6wBDdkFWW/bzZzpF85+Ep Vy/w6EvP9DBuEv5en9l5a8azBpVzthqQlLD5TRxvqMA8J/lxXhj8kd8NZXo9sZji tM9HaACGPYOFTfQ= =gIUG -----END PGP SIGNATURE----- Tue Apr 2 14:15:11 UTC 2024 I: Checking whether the package is not for us Tue Apr 2 14:15:11 UTC 2024 I: Starting 1st build on remote node ionos6-i386.debian.net. Tue Apr 2 14:15:11 UTC 2024 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Tue Apr 2 14:17:57 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 5 08:38:14 -12 2025 I: pbuilder-time-stamp: 1746477494 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-pauvre_0.2.3-3.dsc] I: copying [./python-pauvre_0.2.3.orig.tar.gz] I: copying [./python-pauvre_0.2.3-3.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Sep 6 20:23:37 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-pauvre_0.2.3-3.dsc: no acceptable signature found dpkg-source: info: extracting python-pauvre in python-pauvre-0.2.3 dpkg-source: info: unpacking python-pauvre_0.2.3.orig.tar.gz dpkg-source: info: unpacking python-pauvre_0.2.3-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 2to3.patch dpkg-source: info: applying lsi-test-args.patch dpkg-source: info: applying biopython-1.80.patch dpkg-source: info: applying pandas-2.0.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/74622/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='81a35b2def7f4d43ad4df3ace10789e9' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='74622' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ymMS3ej6/pbuilderrc_zg6c --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ymMS3ej6/b1 --logfile b1/build.log python-pauvre_0.2.3-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos6-i386 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 5 17:48 /bin -> usr/bin I: user script /srv/workspace/pbuilder/74622/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, python3-matplotlib, python3-biopython, python3-pandas, python3-numpy, python3-scipy, python3-sklearn, python3-tk, python3-progressbar dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19876 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-sklearn; however: Package python3-sklearn is not installed. pbuilder-satisfydepends-dummy depends on python3-tk; however: Package python3-tk is not installed. pbuilder-satisfydepends-dummy depends on python3-progressbar; however: Package python3-progressbar is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-extra{a} fonts-dejavu-mono{a} fonts-lyx{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libproc2-0{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8{a} libsharpyuv0{a} libsub-override-perl{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-appdirs{a} python3-attr{a} python3-biopython{a} python3-brotli{a} python3-cairo{a} python3-chardet{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-distutils{a} python3-fonttools{a} python3-freetype{a} python3-fs{a} python3-joblib{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-progressbar{a} python3-pyparsing{a} python3-reportlab{a} python3-rlpycairo{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sklearn{a} python3-sklearn-lib{a} python3-sympy{a} python3-threadpoolctl{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3-unicodedata2{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ psmisc python-biopython-doc python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-psutil python3-pytest python3-simplejson python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 155 newly installed, 0 to remove and 0 not upgraded. Need to get 141 MB of archives. After unpacking 619 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.11-minimal i386 3.11.8-1 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.5.0-2+b2 [104 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 python3.11-minimal i386 3.11.8-1 [2087 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.11.6-1 [26.2 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2024a-1 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-3 [69.1 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libreadline8 i386 8.2-3+b1 [171 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libpython3.11-stdlib i386 3.11.8-1 [1821 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 python3.11 i386 3.11.8-1 [597 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.11.6-1 [9224 B] Get: 13 http://deb.debian.org/debian trixie/main i386 python3 i386 3.11.6-1 [26.2 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.2-1 [807 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.2-1 [2244 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 sgml-base all 1.31 [15.4 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libproc2-0 i386 2:4.0.4-4 [65.4 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 procps i386 2:4.0.4-4 [876 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-2+b1 [314 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libmagic1 i386 1:5.45-2+b1 [114 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-2+b1 [43.0 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-3 [1195 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.39.3-6 [93.3 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-1+b2 [39.6 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.0-3 [1413 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 libtcl8.6 i386 8.6.14+dfsg-1 [1095 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b3 [314 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libpng16-16 i386 1.6.43-1 [285 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libfreetype6 i386 2.13.2+dfsg-1+b1 [449 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-core all 2.37-8 [840 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libfontenc1 i386 1:1.1.8-1 [23.1 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 x11-common all 1:7.7+23 [252 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 xfonts-utils i386 1:7.7+6 [95.2 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 45 http://deb.debian.org/debian trixie/main i386 fontconfig-config i386 2.15.0-1.1 [317 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libfontconfig1 i386 2.15.0-1.1 [401 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 libbsd0 i386 0.12.2-1 [134 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 libx11-data all 2:1.8.7-1 [328 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libx11-6 i386 2:1.8.7-1 [822 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 libxrender1 i386 1:0.9.10-1.1 [34.1 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 libxft2 i386 2.3.6-1+b1 [55.3 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libxss1 i386 1:1.2.3-1 [18.1 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libtk8.6 i386 8.6.14-1 [826 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 tk8.6-blt2.5 i386 2.5.3+dfsg-7 [616 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 blt i386 2.5.3+dfsg-7 [6024 B] Get: 60 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 67 http://deb.debian.org/debian trixie/main i386 libelf1 i386 0.190-1+b1 [182 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1 [118 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b2 [727 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 python3-lib2to3 all 3.11.5-1 [77.5 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 python3-distutils all 3.11.5-1 [131 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 68.1.2-2 [468 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20240310 [106 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-extra all 2.37-8 [1792 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 fonts-lyx all 2.4.0~RC3-1 [189 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.0-3 [140 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 libpixman-1-0 i386 0.42.2-1+b1 [555 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 libxcb-render0 i386 1.15-1 [116 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 libxcb-shm0 i386 1.15-1 [106 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 libcairo2 i386 1.18.0-1+b1 [587 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.20-1 [46.9 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 libfribidi0 i386 1.0.13-3+b1 [71.8 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14-20240201-3 [733 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 libglib2.0-0 i386 2.78.4-1 [1520 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 libgraphite2-3 i386 1.3.14-2 [77.7 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 libharfbuzz0b i386 8.3.0-2 [2234 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 libimagequant0 i386 2.18.0-1 [35.6 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 libjbig0 i386 2.1-6.1+b1 [31.8 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo i386 1:2.1.5-2+b2 [169 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.0-3 [2167 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 liblbfgsb0 i386 3.0+dfsg.4-1+b1 [29.1 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 liblcms2-2 i386 2.14-2+b1 [165 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 liblerc4 i386 4.0.0+ds-4+b1 [180 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 libopenjp2-7 i386 2.5.0-2+b2 [197 kB] Get: 103 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.2-1 [1927 kB] Get: 104 http://deb.debian.org/debian trixie/main i386 libqhull-r8.0 i386 2020.2-6+b1 [256 kB] Get: 105 http://deb.debian.org/debian trixie/main i386 libraqm0 i386 0.10.1-1+b1 [14.7 kB] Get: 106 http://deb.debian.org/debian trixie/main i386 libsharpyuv0 i386 1.3.2-0.4 [107 kB] Get: 107 http://deb.debian.org/debian trixie/main i386 libwebp7 i386 1.3.2-0.4 [314 kB] Get: 108 http://deb.debian.org/debian trixie/main i386 libtiff6 i386 4.5.1+git230720-4 [338 kB] Get: 109 http://deb.debian.org/debian trixie/main i386 libwebpdemux2 i386 1.3.2-0.4 [108 kB] Get: 110 http://deb.debian.org/debian trixie/main i386 libwebpmux3 i386 1.3.2-0.4 [121 kB] Get: 111 http://deb.debian.org/debian trixie/main i386 libxslt1.1 i386 1.1.35-1 [253 kB] Get: 112 http://deb.debian.org/debian trixie/main i386 python-matplotlib-data all 3.6.3-1 [2744 kB] Get: 113 http://deb.debian.org/debian trixie/main i386 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 114 http://deb.debian.org/debian trixie/main i386 python3-attr all 23.2.0-2 [65.5 kB] Get: 115 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.2-1 [653 kB] Get: 116 http://deb.debian.org/debian trixie/main i386 python3-numpy i386 1:1.24.2-2 [4879 kB] Get: 117 http://deb.debian.org/debian trixie/main i386 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 118 http://deb.debian.org/debian trixie/main i386 python3-tk i386 3.11.5-1 [108 kB] Get: 119 http://deb.debian.org/debian trixie/main i386 python3-pil.imagetk i386 10.2.0-1 [78.0 kB] Get: 120 http://deb.debian.org/debian trixie/main i386 python3-pil i386 10.2.0-1 [526 kB] Get: 121 http://deb.debian.org/debian trixie/main i386 python3-cairo i386 1.25.1-2 [142 kB] Get: 122 http://deb.debian.org/debian trixie/main i386 python3-freetype all 2.4.0-1 [80.3 kB] Get: 123 http://deb.debian.org/debian trixie/main i386 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 124 http://deb.debian.org/debian trixie/main i386 python3-reportlab all 4.1.0-1 [674 kB] Get: 125 http://deb.debian.org/debian trixie/main i386 xml-core all 0.19 [20.1 kB] Get: 126 http://deb.debian.org/debian trixie/main i386 w3c-sgml-lib all 1.3-3 [273 kB] Get: 127 http://deb.debian.org/debian trixie/main i386 python3-biopython i386 1.81+dfsg-3 [1616 kB] Get: 128 http://deb.debian.org/debian trixie/main i386 python3-brotli i386 1.1.0-2+b3 [323 kB] Get: 129 http://deb.debian.org/debian trixie/main i386 python3-contourpy i386 1.0.7-3 [295 kB] Get: 130 http://deb.debian.org/debian trixie/main i386 python3-cycler all 0.12.1-1 [9496 B] Get: 131 http://deb.debian.org/debian trixie/main i386 python3-six all 1.16.0-6 [16.3 kB] Get: 132 http://deb.debian.org/debian trixie/main i386 python3-dateutil all 2.9.0-2 [79.4 kB] Get: 133 http://deb.debian.org/debian trixie/main i386 python3-decorator all 5.1.1-5 [15.1 kB] Get: 134 http://deb.debian.org/debian trixie/main i386 python3-scipy i386 1.11.4-6 [19.0 MB] Get: 135 http://deb.debian.org/debian trixie/main i386 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 136 http://deb.debian.org/debian trixie/main i386 python3-mpmath all 1.3.0-1 [419 kB] Get: 137 http://deb.debian.org/debian trixie/main i386 python3-sympy all 1.12-7 [3869 kB] Get: 138 http://deb.debian.org/debian trixie/main i386 python3-tz all 2024.1-2 [30.9 kB] Get: 139 http://deb.debian.org/debian trixie/main i386 python3-fs all 2.4.16-3 [95.3 kB] Get: 140 http://deb.debian.org/debian trixie/main i386 python3-lxml i386 5.1.0-1 [2065 kB] Get: 141 http://deb.debian.org/debian trixie/main i386 python3-lz4 i386 4.0.2+dfsg-1+b3 [25.6 kB] Get: 142 http://deb.debian.org/debian trixie/main i386 python3-unicodedata2 i386 15.1.0+ds-1+b1 [298 kB] Get: 143 http://deb.debian.org/debian trixie/main i386 unicode-data all 15.1.0-1 [8547 kB] Get: 144 http://deb.debian.org/debian trixie/main i386 python3-fonttools i386 4.46.0-1 [1613 kB] Get: 145 http://deb.debian.org/debian trixie/main i386 python3-joblib all 1.3.2-2 [218 kB] Get: 146 http://deb.debian.org/debian trixie/main i386 python3-kiwisolver i386 1.4.4-2 [83.9 kB] Get: 147 http://deb.debian.org/debian trixie/main i386 python3-pyparsing all 3.1.1-1 [145 kB] Get: 148 http://deb.debian.org/debian trixie/main i386 python3-packaging all 23.2-1 [44.8 kB] Get: 149 http://deb.debian.org/debian trixie/main i386 python3-matplotlib i386 3.6.3-1+b2 [8100 kB] Get: 150 http://deb.debian.org/debian trixie/main i386 python3-pandas-lib i386 2.1.4+dfsg-5 [7492 kB] Get: 151 http://deb.debian.org/debian trixie/main i386 python3-pandas all 2.1.4+dfsg-5 [3015 kB] Get: 152 http://deb.debian.org/debian trixie/main i386 python3-progressbar all 2.5-4 [10.8 kB] Get: 153 http://deb.debian.org/debian trixie/main i386 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 154 http://deb.debian.org/debian trixie/main i386 python3-sklearn-lib i386 1.4.1.post1+dfsg-1 [6130 kB] Get: 155 http://deb.debian.org/debian trixie/main i386 python3-sklearn all 1.4.1.post1+dfsg-1 [2246 kB] Fetched 141 MB in 2s (65.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19876 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.8-1_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.8-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.5.0-2+b2_i386.deb ... Unpacking libexpat1:i386 (2.5.0-2+b2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.8-1_i386.deb ... Unpacking python3.11-minimal (3.11.8-1) ... Setting up libpython3.11-minimal:i386 (3.11.8-1) ... Setting up libexpat1:i386 (2.5.0-2+b2) ... Setting up python3.11-minimal (3.11.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20193 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.6-1_i386.deb ... Unpacking python3-minimal (3.11.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-1_all.deb ... Unpacking tzdata (2024a-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-3_all.deb ... Unpacking readline-common (8.2-3) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../5-libreadline8_8.2-3+b1_i386.deb ... Unpacking libreadline8:i386 (8.2-3+b1) ... Selecting previously unselected package libpython3.11-stdlib:i386. Preparing to unpack .../6-libpython3.11-stdlib_3.11.8-1_i386.deb ... Unpacking libpython3.11-stdlib:i386 (3.11.8-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.8-1_i386.deb ... Unpacking python3.11 (3.11.8-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../8-libpython3-stdlib_3.11.6-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.11.6-1) ... Setting up python3-minimal (3.11.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21181 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.6-1_i386.deb ... Unpacking python3 (3.11.6-1) ... Selecting previously unselected package libpython3.12-minimal:i386. Preparing to unpack .../001-libpython3.12-minimal_3.12.2-1_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.2-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../002-python3.12-minimal_3.12.2-1_i386.deb ... Unpacking python3.12-minimal (3.12.2-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../003-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libproc2-0:i386. Preparing to unpack .../004-libproc2-0_2%3a4.0.4-4_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../005-procps_2%3a4.0.4-4_i386.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../006-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../008-libmagic1_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic1:i386 (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.45-2+b1_i386.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../010-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../011-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../012-groff-base_1.23.0-3_i386.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../013-bsdextrautils_2.39.3-6_i386.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../014-libpipeline1_1.5.7-1+b2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-1+b2) ... Selecting previously unselected package man-db. Preparing to unpack .../015-man-db_2.12.0-3_i386.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libtcl8.6:i386. Preparing to unpack .../021-libtcl8.6_8.6.14+dfsg-1_i386.deb ... Unpacking libtcl8.6:i386 (8.6.14+dfsg-1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../022-libbrotli1_1.1.0-2+b3_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b3) ... Selecting previously unselected package libpng16-16:i386. Preparing to unpack .../023-libpng16-16_1.6.43-1_i386.deb ... Unpacking libpng16-16:i386 (1.6.43-1) ... Selecting previously unselected package libfreetype6:i386. Preparing to unpack .../024-libfreetype6_2.13.2+dfsg-1+b1_i386.deb ... Unpacking libfreetype6:i386 (2.13.2+dfsg-1+b1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../025-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../026-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package libfontenc1:i386. Preparing to unpack .../027-libfontenc1_1%3a1.1.8-1_i386.deb ... Unpacking libfontenc1:i386 (1:1.1.8-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../028-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../029-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../030-xfonts-utils_1%3a7.7+6_i386.deb ... Unpacking xfonts-utils (1:7.7+6) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../031-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../032-fontconfig-config_2.15.0-1.1_i386.deb ... Unpacking fontconfig-config (2.15.0-1.1) ... Selecting previously unselected package libfontconfig1:i386. 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Unpacking libx11-6:i386 (2:1.8.7-1) ... Selecting previously unselected package libxrender1:i386. Preparing to unpack .../040-libxrender1_1%3a0.9.10-1.1_i386.deb ... Unpacking libxrender1:i386 (1:0.9.10-1.1) ... Selecting previously unselected package libxft2:i386. Preparing to unpack .../041-libxft2_2.3.6-1+b1_i386.deb ... Unpacking libxft2:i386 (2.3.6-1+b1) ... Selecting previously unselected package libxext6:i386. Preparing to unpack .../042-libxext6_2%3a1.3.4-1+b1_i386.deb ... Unpacking libxext6:i386 (2:1.3.4-1+b1) ... Selecting previously unselected package libxss1:i386. Preparing to unpack .../043-libxss1_1%3a1.2.3-1_i386.deb ... Unpacking libxss1:i386 (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:i386. Preparing to unpack .../044-libtk8.6_8.6.14-1_i386.deb ... Unpacking libtk8.6:i386 (8.6.14-1) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../045-tk8.6-blt2.5_2.5.3+dfsg-7_i386.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ... 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Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:i386 (2.78.4-1) ... No schema files found: doing nothing. Setting up fonts-lyx (2.4.0~RC3-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:i386 (1.1.0-2+b3) ... Setting up libpython3.12-minimal:i386 (3.12.2-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:i386 (1:5.45-2+b1) ... Setting up libdeflate0:i386 (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libqhull-r8.0:i386 (2020.2-6+b1) ... Setting up file (1:5.45-2+b1) ... Setting up libjbig0:i386 (2.1-6.1+b1) ... Setting up tzdata (2024a-1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon May 5 20:38:44 UTC 2025. Universal Time is now: Mon May 5 20:38:44 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up libfontenc1:i386 (1:1.1.8-1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libjpeg62-turbo:i386 (1:2.1.5-2+b2) ... Setting up libx11-data (2:1.8.7-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:i386 (1.0.13-3+b1) ... Setting up libimagequant0:i386 (2.18.0-1) ... Setting up libproc2-0:i386 (2:4.0.4-4) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16:i386 (1.6.43-1) ... Setting up libtcl8.6:i386 (8.6.14+dfsg-1) ... Setting up autopoint (0.21-14) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libgfortran5:i386 (14-20240201-3) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:i386 (1.3.2-0.4) ... Setting up fonts-dejavu-extra (2.37-8) ... Setting up sensible-utils (0.0.22) ... Setting up libtiff6:i386 (4.5.1+git230720-4) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-4) ... Setting up libopenjp2-7:i386 (2.5.0-2+b2) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up libwebpmux3:i386 (1.3.2-0.4) ... Setting up libbsd0:i386 (0.12.2-1) ... Setting up libelf1:i386 (0.190-1+b1) ... Setting up readline-common (8.2-3) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.2-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up liblapack3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libxcb1:i386 (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:i386 (1.15-1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:i386 (1.3.2-0.4) ... Setting up libreadline8:i386 (8.2-3+b1) ... Setting up libxcb-shm0:i386 (1.15-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:i386 (2.13.2+dfsg-1+b1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:i386 (1.1.35-1) ... Setting up libx11-6:i386 (2:1.8.7-1) ... Setting up libharfbuzz0b:i386 (8.3.0-2) ... Setting up libfontconfig1:i386 (2.15.0-1.1) ... Setting up liblbfgsb0:i386 (3.0+dfsg.4-1+b1) ... Setting up libpython3.12-stdlib:i386 (3.12.2-1) ... Setting up libxrender1:i386 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:i386 (3.11.8-1) ... Setting up python3.12 (3.12.2-1) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up xfonts-utils (1:7.7+6) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:i386 (1.18.0-1+b1) ... Setting up libraqm0:i386 (0.10.1-1+b1) ... Setting up libxss1:i386 (1:1.2.3-1) ... Setting up libpython3-stdlib:i386 (3.11.6-1) ... Setting up python3.11 (3.11.8-1) ... Setting up libxft2:i386 (2.3.6-1+b1) ... Setting up libtk8.6:i386 (8.6.14-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.6-1) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-freetype (2.4.0-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-progressbar (2.5-4) ... Setting up python3-pil:i386 (10.2.0-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (23.2-1) ... Setting up python3-pyparsing (3.1.1-1) ... Setting up python3-brotli (1.1.0-2+b3) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.4-2) ... Setting up python3-lxml:i386 (5.1.0-1) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up python3-sympy (1.12-7) ... Setting up python3-attr (23.2.0-2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up python3-cairo (1.25.1-2) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-joblib (1.3.2-2) ... Setting up python3-lz4 (4.0.2+dfsg-1+b3) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b1) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3-threadpoolctl (3.1.0-1) ... Setting up python3-tk:i386 (3.11.5-1) ... Setting up python3-fs (2.4.16-3) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-pil.imagetk:i386 (10.2.0-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-numpy (1:1.24.2-2) ... Setting up python3-reportlab (4.1.0-1) ... Setting up python3-contourpy (1.0.7-3) ... Setting up dh-python (6.20240310) ... Setting up python3-scipy (1.11.4-6) ... Setting up python3-pandas-lib:i386 (2.1.4+dfsg-5) ... Setting up python3-sklearn-lib:i386 (1.4.1.post1+dfsg-1) ... Setting up python3-pandas (2.1.4+dfsg-5) ... Setting up python3-sklearn (1.4.1.post1+dfsg-1) ... Setting up python3-fonttools (4.46.0-1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-1+b2) ... Processing triggers for libc-bin (2.37-15) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.81+dfsg-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-pauvre-0.2.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pauvre_0.2.3-3_source.changes dpkg-buildpackage: info: source package python-pauvre dpkg-buildpackage: info: source version 0.2.3-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:305: python3.11 setup.py clean running clean removing '/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:305: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:305: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/functions.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/marginplot.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/custommargin.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/redwood.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/gfftools.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/pauvre_main.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/browser.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/version.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/synplot.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/stats.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/rcparams.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/__init__.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre copying pauvre/bamparse.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre creating /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi copying pauvre/lsi/test.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi copying pauvre/lsi/helper.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi copying pauvre/lsi/Q.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi copying pauvre/lsi/T.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi copying pauvre/lsi/__init__.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi copying pauvre/lsi/lsi.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi creating /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests copying pauvre/tests/test_synplot.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests copying pauvre/tests/__init__.py -> /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests running egg_info creating pauvre.egg-info writing pauvre.egg-info/PKG-INFO writing dependency_links to pauvre.egg-info/dependency_links.txt writing entry points to pauvre.egg-info/entry_points.txt writing requirements to pauvre.egg-info/requires.txt writing top-level names to pauvre.egg-info/top_level.txt writing manifest file 'pauvre.egg-info/SOURCES.txt' reading manifest file 'pauvre.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pauvre.egg-info/SOURCES.txt' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-pauvre-0.2.3' PYBUILDDIR="$(echo "/build/reproducible-path/python-pauvre-0.2.3"/.pybuild/cpython3_3.*/build)" \ && mkdir -p "${PYBUILDDIR}/pauvre/tests/testdata/alignments" \ "${PYBUILDDIR}/pauvre/tests/testresults" \ && cp -r "/build/reproducible-path/python-pauvre-0.2.3/debian/tests/gff_files" \ "${PYBUILDDIR}/pauvre/tests/testdata" \ && BUILDDIR="${PYBUILDDIR}" PATH="/build/reproducible-path/python-pauvre-0.2.3/debian/bin:$PATH" \ dh_auto_test \ && rm "${PYBUILDDIR}/input" \ && rm -r "${PYBUILDDIR}/pauvre/tests/testdata" \ "${PYBUILDDIR}/pauvre/tests/testresults" I: pybuild base:305: cd /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build; python3.11 -m unittest discover -v test_normal_plotting_scenario (pauvre.tests.test_synplot.libSeq_test_case.test_normal_plotting_scenario) This verifies that the LibSeq class is constructed with all of the ... + export PYTHONPATH=/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build + PYTHONPATH=/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build + exec python3 /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/pauvre_main.py synplot --aln_dir /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/alignments/ --fileform pdf --gff_paths /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/gff_files/Bf201706.gff /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/gff_files/JN392469.gff /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/gff_files/NC016117.gff --center_on COX1 --gff_labels 'B. forskalii' 'P. bachei' 'M. leidyi' /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:106: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead self.seqlen = int(self.features.loc[self.features['tags'] == "Is_circular=true", 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:106: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead self.seqlen = int(self.features.loc[self.features['tags'] == "Is_circular=true", 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:106: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead self.seqlen = int(self.features.loc[self.features['tags'] == "Is_circular=true", 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:175: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:152: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead first_stop = int(shuffle_features.loc[shuffle_features['name'] == first_gene, 'stop']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:160: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead next_start = int(shuffle_features.loc[shuffle_features['name'] == next_gene, 'start']) 0% | | /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:207: FutureWarning: Calling float on a single element Series is deprecated and will raise a TypeError in the future. Use float(ser.iloc[0]) instead this_x = float(self.features.loc[self.features['name'] /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py:209: FutureWarning: Calling float on a single element Series is deprecated and will raise a TypeError in the future. Use float(ser.iloc[0]) instead other_x = float(othermatch) # /other_GFF.seqlen 1% | | 2% |# | 3% |## | 4% |## | 5% |### | 6% |#### | 7% |##### | 8% |##### | 9% |###### | 10% |####### | 11% |######## | 12% |######## | 13% |######### | 14% |########## | 15% |########### | 16% |########### | 17% |############ | 18% |############# | 19% |############# | 20% |############## | 21% |############### | 22% |################ | 23% |################ | 24% |################# | 25% |################## | 26% |################### | 27% |################### | 28% |#################### | 29% |##################### | 30% |###################### | 31% |###################### | 32% |####################### | 33% |######################## | 34% |######################### | 35% |######################### | 36% |########################## | 37% |########################### | 38% |########################### | 39% |############################ | 40% |############################# | 41% |############################## | 42% |############################## | 43% |############################### | 44% |################################ | 45% |################################# | 47% |################################# | 48% |################################## | 49% |################################### | 50% |#################################### | 51% |#################################### | 52% |##################################### | 53% |###################################### | 54% |####################################### | 55% |####################################### | 56% |######################################## | 57% |######################################### | 58% |######################################### | 59% |########################################## | 60% |########################################### | 61% |############################################ | 62% |############################################ | 63% |############################################# | 64% |############################################## | 65% |############################################### | 66% |############################################### | 67% |################################################ | 68% |################################################# | 69% |################################################## | 70% |################################################## | 71% |################################################### | 72% |#################################################### | 73% |#################################################### | 74% |##################################################### | 75% |###################################################### | 76% |####################################################### | 77% |####################################################### | 78% |######################################################## | 79% |######################################################### | 80% |########################################################## | 81% |########################################################## | 82% |########################################################### | 83% |############################################################ | 84% |############################################################# | 85% |############################################################# | 86% |############################################################## | 87% |############################################################### | 88% |################################################################ | 89% |################################################################ | 90% |################################################################# | 91% |################################################################## | 93% |################################################################## | 94% |################################################################### | 95% |#################################################################### | 96% |##################################################################### | 97% |##################################################################### | 98% |###################################################################### | 99% |####################################################################### | 100% |########################################################################| /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/synplot.py:519: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead x_offset = -1 * int(gff.features.loc[gff.features['name'] == args.center_on, 'center']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/synplot.py:519: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead x_offset = -1 * int(gff.features.loc[gff.features['name'] == args.center_on, 'center']) /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/synplot.py:519: FutureWarning: Calling int on a single element Series is deprecated and will raise a TypeError in the future. Use int(ser.iloc[0]) instead x_offset = -1 * int(gff.features.loc[gff.features['name'] == args.center_on, 'center']) - Setting tick labels. /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/synplot.py:564: UserWarning: FixedFormatter should only be used together with FixedLocator panel0.set_xticklabels(empty_string_labels) - Running print_images. Line sweep results: TIME ELAPSED: 0.0011479854583740234 N^2 comparison results: 0 TIME ELAPSED: 0.00022935867309570312 15 15 The data is: Namespace(command='synplot', QUIET=False, aln_dir='/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/alignments', center_on='COX1', dpi=600, fileform=['pdf'], gff_paths=['/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/gff_files/Bf201706.gff', '/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/gff_files/JN392469.gff', '/build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/testdata/gff_files/NC016117.gff'], gff_labels=['B. forskalii', 'P. bachei', 'M. leidyi'], no_timestamp=False, optimum_order=False, BASENAME=None, ratio=None, sandwich=False, start_with_aligned_genes=False, stop_codons=True, transparent=True, func=) The best gene combination is [0, 1, 2] new fewest global intersections: 42 new fewest global intersections: 40 new fewest global intersections: 38 new fewest global intersections: 34 new fewest global intersections: 32 getting alignments file list is: {} done getting alignments seqs_dict is: {} sequence source featType start stop strand tags name center width lmost rmost track 0 Bf201706_circ Geneious gene -1342 -782 + Name=COX2 COX2 -1062.0 561 -1342 -782 0 1 Bf201706_circ Geneious gene -760 761 + Name=COX1 COX1 0.5 1521 -760 761 0 2 Bf201706_circ Geneious rRNA 1119 1495 + Name=12S 12S 1307.0 376 1119 1495 0 3 Bf201706_circ Geneious rRNA 1495 2355 + Name=16S 16S 1925.0 860 1495 2355 0 4 Bf201706_circ Geneious gene 2338 2539 + Name=ND6 ND6 2438.5 201 2338 2539 0 5 Bf201706_circ Geneious gene 2547 3288 + Name=COX3 COX3 2917.5 741 2547 3288 0 6 Bf201706_circ Geneious gene 3563 3935 + Name=ND3 ND3 3749.0 372 3563 3935 0 7 Bf201706_circ Geneious gene 3938 5018 + Name=ND4 ND4 4478.0 1080 3938 5018 0 8 Bf201706_circ Geneious gene 5020 5206 + Name=ND4L ND4L 5113.0 186 5020 5206 0 9 Bf201706_circ Geneious gene 5220 6696 + Name=ND5 ND5 5958.0 1476 5220 6696 0 10 Bf201706_circ Geneious gene 6847 7909 + Name=URF1 URF1 7378.0 1062 6847 7909 0 11 Bf201706_circ Geneious gene 8439 9105 + Name=URF2 URF2 8772.0 666 8439 9105 0 12 Bf201706_circ Geneious gene 9255 9981 + Name=ND2 ND2 9618.0 726 9255 9981 0 13 Bf201706_circ Geneious gene 10102 11155 + Name=CYTB CYTB 10628.5 1053 10102 11155 0 14 Bf201706_circ Geneious gene 11076 11988 + Name=ND1 ND1 11532.0 912 11076 11988 0 len plottable 15 - i,j are currently: 0,1 stop: -782. start: -760. - putting elements 0 through (including) 1 together index sequence source featType start stop strand tags name center width lmost rmost track 0 0 Bf201706_circ Geneious gene -1342 -782 + Name=COX2 COX2 -1062.0 561 -1342 -782 0 - i,j are currently: 1,1 stop: 761. start: 1119. - putting elements 1 through (including) 2 together index sequence source featType start stop strand tags name center width lmost rmost track 0 1 Bf201706_circ Geneious gene -760 761 + Name=COX1 COX1 0.5 1521 -760 761 0 - i,j are currently: 2,1 stop: 1495. start: 1495. - putting elements 2 through (including) 3 together index sequence source featType start stop strand tags name center width lmost rmost track 0 2 Bf201706_circ Geneious rRNA 1119 1495 + Name=12S 12S 1307.0 376 1119 1495 0 - i,j are currently: 3,1 stop: 2355. start: 2338. - i,j are currently: 3,2 stop: 2355. start: 2547. - putting elements 3 through (including) 5 together index sequence source featType start stop strand tags name center width lmost rmost track 0 3 Bf201706_circ Geneious rRNA 1495 2355 + Name=16S 16S 1925.0 860 1495 2355 0 1 4 Bf201706_circ Geneious gene 2338 2539 + Name=ND6 ND6 2438.5 201 2338 2539 0 - i,j are currently: 4,1 stop: 2539. start: 2547. - putting elements 4 through (including) 5 together index sequence source featType start stop strand tags name center width lmost rmost track 0 4 Bf201706_circ Geneious gene 2338 2539 + Name=ND6 ND6 2438.5 201 2338 2539 0 - i,j are currently: 5,1 stop: 3288. start: 3563. - putting elements 5 through (including) 6 together index sequence source featType start stop strand tags name center width lmost rmost track 0 5 Bf201706_circ Geneious gene 2547 3288 + Name=COX3 COX3 2917.5 741 2547 3288 0 - i,j are currently: 6,1 stop: 3935. start: 3938. - putting elements 6 through (including) 7 together index sequence source featType start stop strand tags name center width lmost rmost track 0 6 Bf201706_circ Geneious gene 3563 3935 + Name=ND3 ND3 3749.0 372 3563 3935 0 - i,j are currently: 7,1 stop: 5018. start: 5020. - putting elements 7 through (including) 8 together index sequence source featType start stop strand tags name center width lmost rmost track 0 7 Bf201706_circ Geneious gene 3938 5018 + Name=ND4 ND4 4478.0 1080 3938 5018 0 - i,j are currently: 8,1 stop: 5206. start: 5220. - putting elements 8 through (including) 9 together index sequence source featType start stop strand tags name center width lmost rmost track 0 8 Bf201706_circ Geneious gene 5020 5206 + Name=ND4L ND4L 5113.0 186 5020 5206 0 - i,j are currently: 9,1 stop: 6696. start: 6847. - putting elements 9 through (including) 10 together index sequence source featType start stop strand tags name center width lmost rmost track 0 9 Bf201706_circ Geneious gene 5220 6696 + Name=ND5 ND5 5958.0 1476 5220 6696 0 - i,j are currently: 10,1 stop: 7909. start: 8439. - putting elements 10 through (including) 11 together index sequence source featType start stop strand tags name center width lmost rmost track 0 10 Bf201706_circ Geneious gene 6847 7909 + Name=URF1 URF1 7378.0 1062 6847 7909 0 - i,j are currently: 11,1 stop: 9105. start: 9255. - putting elements 11 through (including) 12 together index sequence source featType start stop strand tags name center width lmost rmost track 0 11 Bf201706_circ Geneious gene 8439 9105 + Name=URF2 URF2 8772.0 666 8439 9105 0 - i,j are currently: 12,1 stop: 9981. start: 10102. - putting elements 12 through (including) 13 together index sequence source featType start stop strand tags name center width lmost rmost track 0 12 Bf201706_circ Geneious gene 9255 9981 + Name=ND2 ND2 9618.0 726 9255 9981 0 - i,j are currently: 13,1 stop: 11155. start: 11076. index sequence source featType start stop strand tags name center width lmost rmost track 0 13 Bf201706_circ Geneious gene 10102 11155 + Name=CYTB CYTB 10628.5 1053 10102 11155 0 1 14 Bf201706_circ Geneious gene 11076 11988 + Name=ND1 ND1 11532.0 912 11076 11988 0 normal path is: Path(array([[-1342. , 2.27], [ -862. , 2.27], [ -782. , 2. ], [ -862. , 1.73], [-1342. , 1.73], [-1342. , 2.27]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((-1342, 2.27) ...) length of myPatches is: 1 normal path is: Path(array([[-760. , 2.27], [ 681. , 2.27], [ 761. , 2. ], [ 681. , 1.73], [-760. , 1.73], [-760. , 2.27]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((-760, 2.27) ...) length of myPatches is: 2 normal path is: Path(array([[1119. , 2.27], [1415. , 2.27], [1495. , 2. ], [1415. , 1.73], [1119. , 1.73], [1119. , 2.27]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((1119, 2.27) ...) length of myPatches is: 3 im in here feat len=2 plotting lff plotting rff there are 2 patches after gffplot_feature_hori PathPatch6((1495, 2.27) ...) length of myPatches is: 4 there are 2 patches after gffplot_feature_hori PathPatch7((2338, 2.27) ...) length of myPatches is: 5 normal path is: Path(array([[2.338e+03, 2.270e+00], [2.459e+03, 2.270e+00], [2.539e+03, 2.000e+00], [2.459e+03, 1.730e+00], [2.338e+03, 1.730e+00], [2.338e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2338, 2.27) ...) length of myPatches is: 6 normal path is: Path(array([[2.547e+03, 2.270e+00], [3.208e+03, 2.270e+00], [3.288e+03, 2.000e+00], [3.208e+03, 1.730e+00], [2.547e+03, 1.730e+00], [2.547e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2547, 2.27) ...) length of myPatches is: 7 normal path is: Path(array([[3.563e+03, 2.270e+00], [3.855e+03, 2.270e+00], [3.935e+03, 2.000e+00], [3.855e+03, 1.730e+00], [3.563e+03, 1.730e+00], [3.563e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((3563, 2.27) ...) length of myPatches is: 8 normal path is: Path(array([[3.938e+03, 2.270e+00], [4.938e+03, 2.270e+00], [5.018e+03, 2.000e+00], [4.938e+03, 1.730e+00], [3.938e+03, 1.730e+00], [3.938e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((3938, 2.27) ...) length of myPatches is: 9 normal path is: Path(array([[5.020e+03, 2.270e+00], [5.126e+03, 2.270e+00], [5.206e+03, 2.000e+00], [5.126e+03, 1.730e+00], [5.020e+03, 1.730e+00], [5.020e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5020, 2.27) ...) length of myPatches is: 10 normal path is: Path(array([[5.220e+03, 2.270e+00], [6.616e+03, 2.270e+00], [6.696e+03, 2.000e+00], [6.616e+03, 1.730e+00], [5.220e+03, 1.730e+00], [5.220e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5220, 2.27) ...) length of myPatches is: 11 normal path is: Path(array([[6.847e+03, 2.270e+00], [7.829e+03, 2.270e+00], [7.909e+03, 2.000e+00], [7.829e+03, 1.730e+00], [6.847e+03, 1.730e+00], [6.847e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((6847, 2.27) ...) length of myPatches is: 12 normal path is: Path(array([[8.439e+03, 2.270e+00], [9.025e+03, 2.270e+00], [9.105e+03, 2.000e+00], [9.025e+03, 1.730e+00], [8.439e+03, 1.730e+00], [8.439e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((8439, 2.27) ...) length of myPatches is: 13 normal path is: Path(array([[9.255e+03, 2.270e+00], [9.901e+03, 2.270e+00], [9.981e+03, 2.000e+00], [9.901e+03, 1.730e+00], [9.255e+03, 1.730e+00], [9.255e+03, 2.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((9255, 2.27) ...) length of myPatches is: 14 im in here feat len=2 plotting lff plotting rff there are 2 patches after gffplot_feature_hori PathPatch6((10102, 2.27) ...) length of myPatches is: 15 there are 2 patches after gffplot_feature_hori PathPatch7((11076, 2.27) ...) length of myPatches is: 16 There are 16 patches at the end of gffplot_horizontal() sequence source featType start stop strand tags name center width lmost rmost track 0 JN392469 Geneious gene -767 768 + Name=COX1 gene COX1 0.5 1536 -767 768 0 1 JN392469 Geneious gene 892 1470 + Name=COX2 gene COX2 1181.0 579 892 1470 0 2 JN392469 Geneious rRNA 1750 2692 + Name=16S rRNA 16S 2221.0 943 1750 2692 0 3 JN392469 Geneious rRNA 2723 3285 + Name=12S rRNA 12S 3004.0 563 2723 3285 0 4 JN392469 Geneious gene 3286 4023 + Name=COX3 gene COX3 3654.5 738 3286 4023 0 5 JN392469 Geneious gene 4034 4699 + Name=ND2 gene ND2 4366.5 666 4034 4699 0 6 JN392469 Geneious gene 4753 5070 + Name=ND3 gene ND3 4911.5 318 4753 5070 0 7 JN392469 Geneious gene 5074 6141 + Name=ND4 gene ND4 5607.5 1068 5074 6141 0 8 JN392469 Geneious gene 6306 7385 + Name=CYTB gene CYTB 6845.5 1080 6306 7385 0 9 JN392469 Geneious gene 7390 8901 + Name=ND5 gene ND5 8145.5 1512 7390 8901 0 10 JN392469 Geneious gene 8904 9740 + Name=ND1 gene ND1 9322.0 837 8904 9740 0 11 JN392469 Geneious gene 9743 9937 + Name=ND6 gene ND6 9840.0 195 9743 9937 0 12 JN392469 Geneious gene 10035 10232 + Name=ND4L gene ND4L 10133.5 198 10035 10232 0 len plottable 13 - i,j are currently: 0,1 stop: 768. start: 892. - putting elements 0 through (including) 1 together index sequence source featType start stop strand tags name center width lmost rmost track 0 0 JN392469 Geneious gene -767 768 + Name=COX1 gene COX1 0.5 1536 -767 768 0 - i,j are currently: 1,1 stop: 1470. start: 1750. - putting elements 1 through (including) 2 together index sequence source featType start stop strand tags name center width lmost rmost track 0 1 JN392469 Geneious gene 892 1470 + Name=COX2 gene COX2 1181.0 579 892 1470 0 - i,j are currently: 2,1 stop: 2692. start: 2723. - putting elements 2 through (including) 3 together index sequence source featType start stop strand tags name center width lmost rmost track 0 2 JN392469 Geneious rRNA 1750 2692 + Name=16S rRNA 16S 2221.0 943 1750 2692 0 - i,j are currently: 3,1 stop: 3285. start: 3286. - putting elements 3 through (including) 4 together index sequence source featType start stop strand tags name center width lmost rmost track 0 3 JN392469 Geneious rRNA 2723 3285 + Name=12S rRNA 12S 3004.0 563 2723 3285 0 - i,j are currently: 4,1 stop: 4023. start: 4034. - putting elements 4 through (including) 5 together index sequence source featType start stop strand tags name center width lmost rmost track 0 4 JN392469 Geneious gene 3286 4023 + Name=COX3 gene COX3 3654.5 738 3286 4023 0 - i,j are currently: 5,1 stop: 4699. start: 4753. - putting elements 5 through (including) 6 together index sequence source featType start stop strand tags name center width lmost rmost track 0 5 JN392469 Geneious gene 4034 4699 + Name=ND2 gene ND2 4366.5 666 4034 4699 0 - i,j are currently: 6,1 stop: 5070. start: 5074. - putting elements 6 through (including) 7 together index sequence source featType start stop strand tags name center width lmost rmost track 0 6 JN392469 Geneious gene 4753 5070 + Name=ND3 gene ND3 4911.5 318 4753 5070 0 - i,j are currently: 7,1 stop: 6141. start: 6306. - putting elements 7 through (including) 8 together index sequence source featType start stop strand tags name center width lmost rmost track 0 7 JN392469 Geneious gene 5074 6141 + Name=ND4 gene ND4 5607.5 1068 5074 6141 0 - i,j are currently: 8,1 stop: 7385. start: 7390. - putting elements 8 through (including) 9 together index sequence source featType start stop strand tags name center width lmost rmost track 0 8 JN392469 Geneious gene 6306 7385 + Name=CYTB gene CYTB 6845.5 1080 6306 7385 0 - i,j are currently: 9,1 stop: 8901. start: 8904. - putting elements 9 through (including) 10 together index sequence source featType start stop strand tags name center width lmost rmost track 0 9 JN392469 Geneious gene 7390 8901 + Name=ND5 gene ND5 8145.5 1512 7390 8901 0 - i,j are currently: 10,1 stop: 9740. start: 9743. - putting elements 10 through (including) 11 together index sequence source featType start stop strand tags name center width lmost rmost track 0 10 JN392469 Geneious gene 8904 9740 + Name=ND1 gene ND1 9322.0 837 8904 9740 0 - i,j are currently: 11,1 stop: 9937. start: 10035. - putting elements 11 through (including) 12 together index sequence source featType start stop strand tags name center width lmost rmost track 0 11 JN392469 Geneious gene 9743 9937 + Name=ND6 gene ND6 9840.0 195 9743 9937 0 index sequence source featType start stop strand tags name center width lmost rmost track 0 12 JN392469 Geneious gene 10035 10232 + Name=ND4L gene ND4L 10133.5 198 10035 10232 0 normal path is: Path(array([[-7.67e+02, 1.27e+00], [ 6.88e+02, 1.27e+00], [ 7.68e+02, 1.00e+00], [ 6.88e+02, 7.30e-01], [-7.67e+02, 7.30e-01], [-7.67e+02, 1.27e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((-767, 1.27) ...) length of myPatches is: 1 normal path is: Path(array([[8.92e+02, 1.27e+00], [1.39e+03, 1.27e+00], [1.47e+03, 1.00e+00], [1.39e+03, 7.30e-01], [8.92e+02, 7.30e-01], [8.92e+02, 1.27e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((892, 1.27) ...) length of myPatches is: 2 normal path is: Path(array([[1.750e+03, 1.270e+00], [2.612e+03, 1.270e+00], [2.692e+03, 1.000e+00], [2.612e+03, 7.300e-01], [1.750e+03, 7.300e-01], [1.750e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((1750, 1.27) ...) length of myPatches is: 3 normal path is: Path(array([[2.723e+03, 1.270e+00], [3.205e+03, 1.270e+00], [3.285e+03, 1.000e+00], [3.205e+03, 7.300e-01], [2.723e+03, 7.300e-01], [2.723e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2723, 1.27) ...) length of myPatches is: 4 normal path is: Path(array([[3.286e+03, 1.270e+00], [3.943e+03, 1.270e+00], [4.023e+03, 1.000e+00], [3.943e+03, 7.300e-01], [3.286e+03, 7.300e-01], [3.286e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((3286, 1.27) ...) length of myPatches is: 5 normal path is: Path(array([[4.034e+03, 1.270e+00], [4.619e+03, 1.270e+00], [4.699e+03, 1.000e+00], [4.619e+03, 7.300e-01], [4.034e+03, 7.300e-01], [4.034e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((4034, 1.27) ...) length of myPatches is: 6 normal path is: Path(array([[4.753e+03, 1.270e+00], [4.990e+03, 1.270e+00], [5.070e+03, 1.000e+00], [4.990e+03, 7.300e-01], [4.753e+03, 7.300e-01], [4.753e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((4753, 1.27) ...) length of myPatches is: 7 normal path is: Path(array([[5.074e+03, 1.270e+00], [6.061e+03, 1.270e+00], [6.141e+03, 1.000e+00], [6.061e+03, 7.300e-01], [5.074e+03, 7.300e-01], [5.074e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5074, 1.27) ...) length of myPatches is: 8 normal path is: Path(array([[6.306e+03, 1.270e+00], [7.305e+03, 1.270e+00], [7.385e+03, 1.000e+00], [7.305e+03, 7.300e-01], [6.306e+03, 7.300e-01], [6.306e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((6306, 1.27) ...) length of myPatches is: 9 normal path is: Path(array([[7.390e+03, 1.270e+00], [8.821e+03, 1.270e+00], [8.901e+03, 1.000e+00], [8.821e+03, 7.300e-01], [7.390e+03, 7.300e-01], [7.390e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((7390, 1.27) ...) length of myPatches is: 10 normal path is: Path(array([[8.904e+03, 1.270e+00], [9.660e+03, 1.270e+00], [9.740e+03, 1.000e+00], [9.660e+03, 7.300e-01], [8.904e+03, 7.300e-01], [8.904e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((8904, 1.27) ...) length of myPatches is: 11 normal path is: Path(array([[9.743e+03, 1.270e+00], [9.857e+03, 1.270e+00], [9.937e+03, 1.000e+00], [9.857e+03, 7.300e-01], [9.743e+03, 7.300e-01], [9.743e+03, 1.270e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((9743, 1.27) ...) length of myPatches is: 12 normal path is: Path(array([[1.0035e+04, 1.2700e+00], [1.0152e+04, 1.2700e+00], [1.0232e+04, 1.0000e+00], [1.0152e+04, 7.3000e-01], [1.0035e+04, 7.3000e-01], [1.0035e+04, 1.2700e+00]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((10035, 1.27) ...) length of myPatches is: 13 There are 13 patches at the end of gffplot_horizontal() sequence source featType start stop strand tags name center width lmost rmost track 0 NC_016117 Geneious gene -760 760 + Name=COX1 gene COX1 0.0 1521 -760 760 0 1 NC_016117 Geneious gene 764 1486 + Name=COX3 gene COX3 1125.0 723 764 1486 0 2 NC_016117 Geneious gene 1486 1809 + Name=ND3 gene ND3 1647.5 324 1486 1809 0 3 NC_016117 Geneious gene 1813 2388 + Name=COX2 gene COX2 2100.5 576 1813 2388 0 4 NC_016117 Geneious rRNA 2392 2759 + Name=12S rRNA 12S 2575.5 368 2392 2759 0 5 NC_016117 Geneious rRNA 2760 3637 + Name=16S rRNA 16S 3198.5 878 2760 3637 0 6 NC_016117 Geneious gene 3638 4729 + Name=ND4 gene ND4 4183.5 1092 3638 4729 0 7 NC_016117 Geneious gene 4734 5456 + Name=ND2 gene ND2 5095.0 723 4734 5456 0 8 NC_016117 Geneious gene 5460 5654 + Name=ND4L gene ND4L 5557.0 195 5460 5654 0 9 NC_016117 Geneious gene 5766 7169 + Name=ND5 gene ND5 6467.5 1404 5766 7169 0 10 NC_016117 Geneious gene 7172 8038 + Name=ND1 gene ND1 7605.0 867 7172 8038 0 11 NC_016117 Geneious gene 8014 9096 + Name=CYTB gene CYTB 8555.0 1083 8014 9096 0 12 NC_016117 Geneious gene 9086 9286 + Name=ND6 gene ND6 9186.0 201 9086 9286 0 len plottable 13 - i,j are currently: 0,1 stop: 760. start: 764. - putting elements 0 through (including) 1 together index sequence source featType start stop strand tags name center width lmost rmost track 0 0 NC_016117 Geneious gene -760 760 + Name=COX1 gene COX1 0.0 1521 -760 760 0 - i,j are currently: 1,1 stop: 1486. start: 1486. - putting elements 1 through (including) 2 together index sequence source featType start stop strand tags name center width lmost rmost track 0 1 NC_016117 Geneious gene 764 1486 + Name=COX3 gene COX3 1125.0 723 764 1486 0 - i,j are currently: 2,1 stop: 1809. start: 1813. - putting elements 2 through (including) 3 together index sequence source featType start stop strand tags name center width lmost rmost track 0 2 NC_016117 Geneious gene 1486 1809 + Name=ND3 gene ND3 1647.5 324 1486 1809 0 - i,j are currently: 3,1 stop: 2388. start: 2392. - putting elements 3 through (including) 4 together index sequence source featType start stop strand tags name center width lmost rmost track 0 3 NC_016117 Geneious gene 1813 2388 + Name=COX2 gene COX2 2100.5 576 1813 2388 0 - i,j are currently: 4,1 stop: 2759. start: 2760. - putting elements 4 through (including) 5 together index sequence source featType start stop strand tags name center width lmost rmost track 0 4 NC_016117 Geneious rRNA 2392 2759 + Name=12S rRNA 12S 2575.5 368 2392 2759 0 - i,j are currently: 5,1 stop: 3637. start: 3638. - putting elements 5 through (including) 6 together index sequence source featType start stop strand tags name center width lmost rmost track 0 5 NC_016117 Geneious rRNA 2760 3637 + Name=16S rRNA 16S 3198.5 878 2760 3637 0 - i,j are currently: 6,1 stop: 4729. start: 4734. - putting elements 6 through (including) 7 together index sequence source featType start stop strand tags name center width lmost rmost track 0 6 NC_016117 Geneious gene 3638 4729 + Name=ND4 gene ND4 4183.5 1092 3638 4729 0 - i,j are currently: 7,1 stop: 5456. start: 5460. - putting elements 7 through (including) 8 together index sequence source featType start stop strand tags name center width lmost rmost track 0 7 NC_016117 Geneious gene 4734 5456 + Name=ND2 gene ND2 5095.0 723 4734 5456 0 - i,j are currently: 8,1 stop: 5654. start: 5766. - putting elements 8 through (including) 9 together index sequence source featType start stop strand tags name center width lmost rmost track 0 8 NC_016117 Geneious gene 5460 5654 + Name=ND4L gene ND4L 5557.0 195 5460 5654 0 - i,j are currently: 9,1 stop: 7169. start: 7172. - putting elements 9 through (including) 10 together index sequence source featType start stop strand tags name center width lmost rmost track 0 9 NC_016117 Geneious gene 5766 7169 + Name=ND5 gene ND5 6467.5 1404 5766 7169 0 - i,j are currently: 10,1 stop: 8038. start: 8014. - i,j are currently: 10,2 stop: 8038. start: 9086. - putting elements 10 through (including) 12 together index sequence source featType start stop strand tags name center width lmost rmost track 0 10 NC_016117 Geneious gene 7172 8038 + Name=ND1 gene ND1 7605.0 867 7172 8038 0 1 11 NC_016117 Geneious gene 8014 9096 + Name=CYTB gene CYTB 8555.0 1083 8014 9096 0 - i,j are currently: 11,1 stop: 9096. start: 9086. index sequence source featType start stop strand tags name center width lmost rmost track 0 11 NC_016117 Geneious gene 8014 9096 + Name=CYTB gene CYTB 8555.0 1083 8014 9096 0 1 12 NC_016117 Geneious gene 9086 9286 + Name=ND6 gene ND6 9186.0 201 9086 9286 0 normal path is: Path(array([[-7.6e+02, 2.7e-01], [ 6.8e+02, 2.7e-01], [ 7.6e+02, 0.0e+00], [ 6.8e+02, -2.7e-01], [-7.6e+02, -2.7e-01], [-7.6e+02, 2.7e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((-760, 0.27) ...) length of myPatches is: 1 normal path is: Path(array([[ 7.640e+02, 2.700e-01], [ 1.406e+03, 2.700e-01], [ 1.486e+03, 0.000e+00], [ 1.406e+03, -2.700e-01], [ 7.640e+02, -2.700e-01], [ 7.640e+02, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((764, 0.27) ...) length of myPatches is: 2 normal path is: Path(array([[ 1.486e+03, 2.700e-01], [ 1.729e+03, 2.700e-01], [ 1.809e+03, 0.000e+00], [ 1.729e+03, -2.700e-01], [ 1.486e+03, -2.700e-01], [ 1.486e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((1486, 0.27) ...) length of myPatches is: 3 normal path is: Path(array([[ 1.813e+03, 2.700e-01], [ 2.308e+03, 2.700e-01], [ 2.388e+03, 0.000e+00], [ 2.308e+03, -2.700e-01], [ 1.813e+03, -2.700e-01], [ 1.813e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((1813, 0.27) ...) length of myPatches is: 4 normal path is: Path(array([[ 2.392e+03, 2.700e-01], [ 2.679e+03, 2.700e-01], [ 2.759e+03, 0.000e+00], [ 2.679e+03, -2.700e-01], [ 2.392e+03, -2.700e-01], [ 2.392e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2392, 0.27) ...) length of myPatches is: 5 normal path is: Path(array([[ 2.760e+03, 2.700e-01], [ 3.557e+03, 2.700e-01], [ 3.637e+03, 0.000e+00], [ 3.557e+03, -2.700e-01], [ 2.760e+03, -2.700e-01], [ 2.760e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((2760, 0.27) ...) length of myPatches is: 6 normal path is: Path(array([[ 3.638e+03, 2.700e-01], [ 4.649e+03, 2.700e-01], [ 4.729e+03, 0.000e+00], [ 4.649e+03, -2.700e-01], [ 3.638e+03, -2.700e-01], [ 3.638e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((3638, 0.27) ...) length of myPatches is: 7 normal path is: Path(array([[ 4.734e+03, 2.700e-01], [ 5.376e+03, 2.700e-01], [ 5.456e+03, 0.000e+00], [ 5.376e+03, -2.700e-01], [ 4.734e+03, -2.700e-01], [ 4.734e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((4734, 0.27) ...) length of myPatches is: 8 normal path is: Path(array([[ 5.460e+03, 2.700e-01], [ 5.574e+03, 2.700e-01], [ 5.654e+03, 0.000e+00], [ 5.574e+03, -2.700e-01], [ 5.460e+03, -2.700e-01], [ 5.460e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5460, 0.27) ...) length of myPatches is: 9 normal path is: Path(array([[ 5.766e+03, 2.700e-01], [ 7.089e+03, 2.700e-01], [ 7.169e+03, 0.000e+00], [ 7.089e+03, -2.700e-01], [ 5.766e+03, -2.700e-01], [ 5.766e+03, 2.700e-01]]), array([ 1, 2, 2, 2, 2, 79], dtype=uint8)) there are 1 patches after gffplot_feature_hori PathPatch6((5766, 0.27) ...) length of myPatches is: 10 im in here feat len=2 plotting lff plotting rff there are 2 patches after gffplot_feature_hori PathPatch6((7172, 0.27) ...) length of myPatches is: 11 there are 2 patches after gffplot_feature_hori PathPatch7((8014, 0.27) ...) length of myPatches is: 12 im in here feat len=2 plotting lff plotting rff there are 2 patches after gffplot_feature_hori PathPatch6((8014, 0.27) ...) length of myPatches is: 13 there are 2 patches after gffplot_feature_hori PathPatch7((9086, 0.27) ...) length of myPatches is: 14 There are 14 patches at the end of gffplot_horizontal() ok ---------------------------------------------------------------------- Ran 1 test in 46.525s OK The return code is: 0 make[1]: Leaving directory '/build/reproducible-path/python-pauvre-0.2.3' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-pauvre/ -O--buildsystem=pybuild I: pybuild base:305: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing pauvre.egg-info/PKG-INFO writing dependency_links to pauvre.egg-info/dependency_links.txt writing entry points to pauvre.egg-info/entry_points.txt writing requirements to pauvre.egg-info/requires.txt writing top-level names to pauvre.egg-info/top_level.txt reading manifest file 'pauvre.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pauvre.egg-info/SOURCES.txt' running install_lib creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11 creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/functions.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/marginplot.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/custommargin.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/__pycache__/test.cpython-311.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/__pycache__/Q.cpython-311.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/__pycache__/T.cpython-311.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/__pycache__/lsi.cpython-311.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/__pycache__/helper.cpython-311.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/test.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/helper.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/Q.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/T.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/__init__.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/lsi/lsi.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/redwood.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/__pycache__/gfftools.cpython-311.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/__pycache__/version.cpython-311.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/__pycache__/functions.cpython-311.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/__pycache__/rcparams.cpython-311.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/__pycache__/synplot.cpython-311.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/gfftools.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/pauvre_main.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/browser.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/version.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests creating /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/__pycache__/test_synplot.cpython-311.pyc -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests/__pycache__ copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/test_synplot.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/tests/__init__.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/synplot.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/stats.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/rcparams.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/__init__.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre copying /build/reproducible-path/python-pauvre-0.2.3/.pybuild/cpython3_3.11_pauvre/build/pauvre/bamparse.py -> /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/functions.py to functions.cpython-311.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/marginplot.py to marginplot.cpython-311.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/custommargin.py to custommargin.cpython-311.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/test.py to test.cpython-311.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/helper.py to helper.cpython-311.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/Q.py to Q.cpython-311.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/T.py to T.cpython-311.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/lsi/lsi.py to lsi.cpython-311.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/redwood.py to redwood.cpython-311.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/gfftools.py to gfftools.cpython-311.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/pauvre_main.py to pauvre_main.cpython-311.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/browser.py to browser.cpython-311.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/version.py to version.cpython-311.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests/test_synplot.py to test_synplot.cpython-311.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/tests/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/synplot.py to synplot.cpython-311.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/stats.py to stats.cpython-311.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/rcparams.py to rcparams.cpython-311.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre/bamparse.py to bamparse.cpython-311.pyc running install_egg_info Copying pauvre.egg-info to /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/lib/python3.11/dist-packages/pauvre-0.2.3.egg-info Skipping SOURCES.txt running install_scripts Installing pauvre script to /build/reproducible-path/python-pauvre-0.2.3/debian/python3-pauvre/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/python-pauvre-0.2.3' # Do not install test script in Python lib find debian -name scripts -type d | xargs rm -rf dh_installexamples sed -i 's/^git clone/#&/' `find debian -name test.sh` make[1]: Leaving directory '/build/reproducible-path/python-pauvre-0.2.3' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pauvre' in '../python3-pauvre_0.2.3-3_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pauvre_0.2.3-3_i386.buildinfo dpkg-genchanges --build=binary -O../python-pauvre_0.2.3-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/74622 and its subdirectories I: Current time: Mon May 5 08:40:56 -12 2025 I: pbuilder-time-stamp: 1746477656 Tue Apr 2 14:17:57 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos12-i386.debian.net. Tue Apr 2 14:17:57 UTC 2024 I: Preparing to do remote build '2' on ionos12-i386.debian.net. Tue Apr 2 14:23:01 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. Tue Apr 2 14:23:02 UTC 2024 I: python-pauvre_0.2.3-3_i386.changes: Format: 1.8 Date: Wed, 06 Sep 2023 22:18:51 +0200 Source: python-pauvre Binary: python3-pauvre Architecture: all Version: 0.2.3-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: python3-pauvre - QC and genome browser plotting Oxford Nanopore and PacBio long re Closes: 1044070 Changes: python-pauvre (0.2.3-3) unstable; urgency=medium . * pandas-2.0.patch: new: fix ftbfs with pandas 2.0. (Closes: #1044070) * d/copyright: bump packaging copyright year. Checksums-Sha1: eb4270fcbd8b6e5b4cf9652fc3ea1e2e54b18d80 8966 python-pauvre_0.2.3-3_i386.buildinfo 754daba9a0b3e741a40b31ffffac7d21003fce7a 51736 python3-pauvre_0.2.3-3_all.deb Checksums-Sha256: 856395af8d90e95528f39f2b04bbdbb82b288c137ecbe77ac665cf31a0f7dfa3 8966 python-pauvre_0.2.3-3_i386.buildinfo a0042afb71a1d9d6a257c3498eadccf1cecec33d91609d25c2be8db49e20aad2 51736 python3-pauvre_0.2.3-3_all.deb Files: 87990a4942a2533266fa04e423ccc2f9 8966 science optional python-pauvre_0.2.3-3_i386.buildinfo 49045dab2d3cb78843e5b8dc1c2247ab 51736 python optional python3-pauvre_0.2.3-3_all.deb Tue Apr 2 14:23:03 UTC 2024 I: diffoscope 262 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_6-17734.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ymMS3ej6/python-pauvre_0.2.3-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ymMS3ej6/python-pauvre_0.2.3-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ymMS3ej6/python-pauvre_0.2.3-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ymMS3ej6/b1/python-pauvre_0.2.3-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.ymMS3ej6/b2/python-pauvre_0.2.3-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.355s) 0.355s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.015s) 0.015s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 726ms CPU time consumed: 720ms Tue Apr 2 14:23:04 UTC 2024 I: diffoscope 262 found no differences in the changes files, and a .buildinfo file also exists. Tue Apr 2 14:23:04 UTC 2024 I: python-pauvre from trixie built successfully and reproducibly on i386. Tue Apr 2 14:23:05 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Apr 2 14:23:05 UTC 2024 I: Submitting 12K b1/python-pauvre_0.2.3-3_i386.buildinfo.asc Tue Apr 2 14:23:06 UTC 2024 I: Submitting 12K b2/python-pauvre_0.2.3-3_i386.buildinfo.asc Tue Apr 2 14:23:07 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Apr 2 14:23:07 UTC 2024 I: Done submitting .buildinfo files. Tue Apr 2 14:23:07 UTC 2024 I: Removing signed python-pauvre_0.2.3-3_i386.buildinfo.asc files: removed './b1/python-pauvre_0.2.3-3_i386.buildinfo.asc' removed './b2/python-pauvre_0.2.3-3_i386.buildinfo.asc'