Tue Apr 2 14:30:10 UTC 2024 I: starting to build python-cutadapt/trixie/i386 on jenkins on '2024-04-02 14:29' Tue Apr 2 14:30:10 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_7/20806/console.log Tue Apr 2 14:30:10 UTC 2024 I: Downloading source for trixie/python-cutadapt=4.7-2 --2024-04-02 14:30:10-- http://deb.debian.org/debian/pool/main/p/python-cutadapt/python-cutadapt_4.7-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2484 (2.4K) [text/prs.lines.tag] Saving to: ‘python-cutadapt_4.7-2.dsc’ 0K .. 100% 389M=0s 2024-04-02 14:30:10 (389 MB/s) - ‘python-cutadapt_4.7-2.dsc’ saved [2484/2484] Tue Apr 2 14:30:10 UTC 2024 I: python-cutadapt_4.7-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-cutadapt Binary: python3-cutadapt, cutadapt Architecture: any all Version: 4.7-2 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille , Kevin Murray , Steffen Moeller , Homepage: https://cutadapt.readthedocs.io/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/python-cutadapt Vcs-Git: https://salsa.debian.org/med-team/python-cutadapt.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libpython3-all-dev, python3-all-dev:any, pybuild-plugin-pyproject, python3-setuptools, python3-setuptools-scm:native, python3-pytest , python3-pytest-mock , python3-pytest-timeout , python3-xopen , python3-dnaio (>= 1.2.0) , cython3:native Package-List: cutadapt deb science optional arch=all python3-cutadapt deb python optional arch=any Checksums-Sha1: 68caaa5b5f0d2c96ce2ff738e6f00bb00710fae4 243405 python-cutadapt_4.7.orig.tar.gz 6dfbb1bbee6e2c416c4d2af28a38e5c015d5b875 8856 python-cutadapt_4.7-2.debian.tar.xz Checksums-Sha256: 1428d60b8bda27910172119a337e954d4f44550dd28688af139c734b6d479ecb 243405 python-cutadapt_4.7.orig.tar.gz 4e3292a2df91f2fe2a2362770aa59d002367a46c8c00e738007fdcc7b8e7182f 8856 python-cutadapt_4.7-2.debian.tar.xz Files: 94eeeb9c6c4703113e92ef4ffa6f0036 243405 python-cutadapt_4.7.orig.tar.gz 319e2e4e605f89de482c2ed8707f1304 8856 python-cutadapt_4.7-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmYD4JIACgkQPCZ2P2xn 5uJWuA//RVzIp8i7PqkltA9hYh70/A1tmFCXTb7tWmosxhPbyO4H/dNXlNj/uHBG 1enUCqKVoyZb2t7hk/cP9B5WcwYhZVHl4o2IG/HGyFHvhCK8bLONsvVTfVAC5fyS ryxGE9bSiQUb4AH12h0BTRx6eSwVAmHdP8ICiD+NQszfnGoDksbKGjFV7GevJxl5 vIbvBYukKY4+ZnYVS9g7C680kIksQUDOZ509mBgQgSbvcTwr9JtK6nmHzlDAr7Jj +4FoWYp3v+ehe5niODlRgWp2YTBWl343iq1Mb1SCrV+B4vDcBDQ/55foOhrTIVp4 G9XZ28aEu/rl6p5eY80vzVYJqwh4GAu7sQUzSzQPBwbRlUU6xS8DGu85N/pkBGkt 9o7QSwtjhA2sWQADkg8XSQc/kJuIr8s7EeZUIptlnwdAue3xJ0cfjpLXJaisrvdK NXYZLRTryBNaHkpMg2uo9GmkoPSp7Dt/V4i8cRC5CE5NKGdbnElbLcJZ0Jk9OWIV 2euOFgdi/qXSwnBBfyR9Kc3wQ9vTLMgj/u711fnMS2LStM95qJAdABnWpXSNbbaQ +NNcLspLCANTkT8aPZqKZWF5Nk5Xyq1w82/VZZ+J8/DCer5aM3GoGk62TW7sc1Sf qmPSo62y/j7qEZg52oVdVeQ2noZPO61Tg0o7vVrZ9hS/MW2NvWQ= =chBJ -----END PGP SIGNATURE----- Tue Apr 2 14:30:10 UTC 2024 I: Checking whether the package is not for us Tue Apr 2 14:30:10 UTC 2024 I: Starting 1st build on remote node ionos12-i386.debian.net. Tue Apr 2 14:30:10 UTC 2024 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Tue Apr 2 14:33:27 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Apr 2 02:30:13 -12 2024 I: pbuilder-time-stamp: 1712068213 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-cutadapt_4.7-2.dsc] I: copying [./python-cutadapt_4.7.orig.tar.gz] I: copying [./python-cutadapt_4.7-2.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Mar 27 09:02:10 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-cutadapt_4.7-2.dsc: no acceptable signature found dpkg-source: info: extracting python-cutadapt in python-cutadapt-4.7 dpkg-source: info: unpacking python-cutadapt_4.7.orig.tar.gz dpkg-source: info: unpacking python-cutadapt_4.7-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/26068/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='8c1788050be94781bdb1ffc733818e66' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='26068' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4PQG3BZE/pbuilderrc_yl4g --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4PQG3BZE/b1 --logfile b1/build.log python-cutadapt_4.7-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos12-i386 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 1 11:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/26068/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, libpython3-all-dev, python3-all-dev:any, pybuild-plugin-pyproject, python3-setuptools, python3-setuptools-scm:native, python3-pytest, python3-pytest-mock, python3-pytest-timeout, python3-xopen, python3-dnaio (>= 1.2.0), cython3:native dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19876 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libpython3-all-dev; however: Package libpython3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev:any. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm:native. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-timeout; however: Package python3-pytest-timeout is not installed. pbuilder-satisfydepends-dummy depends on python3-xopen; however: Package python3-xopen is not installed. pbuilder-satisfydepends-dummy depends on python3-dnaio (>= 1.2.0); however: Package python3-dnaio is not installed. pbuilder-satisfydepends-dummy depends on cython3:native. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} pigz{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-all-dev{a} python3-build{a} python3-dev{a} python3-distutils{a} python3-dnaio{a} python3-iniconfig{a} python3-installer{a} python3-lib2to3{a} python3-minimal{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytest-mock{a} python3-pytest-timeout{a} python3-setuptools{a} python3-setuptools-scm{a} python3-toml{a} python3-typing-extensions{a} python3-wheel{a} python3-xopen{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pygments wget 0 packages upgraded, 86 newly installed, 0 to remove and 0 not upgraded. Need to get 55.8 MB of archives. After unpacking 219 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 pigz i386 2.8-1 [63.3 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libpython3.11-minimal i386 3.11.8-1 [817 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.5.0-2+b2 [104 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 python3.11-minimal i386 3.11.8-1 [2087 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.11.6-1 [26.2 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 tzdata all 2024a-1 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-3 [69.1 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libreadline8 i386 8.2-3+b1 [171 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpython3.11-stdlib i386 3.11.8-1 [1821 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 python3.11 i386 3.11.8-1 [597 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.11.6-1 [9224 B] Get: 14 http://deb.debian.org/debian trixie/main i386 python3 i386 3.11.6-1 [26.2 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.2-1 [807 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.2-1 [2244 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-2+b1 [314 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libmagic1 i386 1:5.45-2+b1 [114 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-2+b1 [43.0 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-3 [1195 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.39.3-6 [93.3 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-1+b2 [39.6 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.0-3 [1413 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 cython3 i386 3.0.8-1 [6323 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 40 http://deb.debian.org/debian trixie/main i386 libelf1 i386 0.190-1+b1 [182 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1 [118 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b2 [727 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 python3-lib2to3 all 3.11.5-1 [77.5 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 python3-distutils all 3.11.5-1 [131 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 68.1.2-2 [468 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20240310 [106 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 libexpat1-dev i386 2.5.0-2+b2 [159 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libpython3.11 i386 3.11.8-1 [2009 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg-3+b1 [915 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libpython3.11-dev i386 3.11.8-1 [4726 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libpython3-dev i386 3.11.6-1 [9496 B] Get: 61 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.2-1 [1927 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libpython3.12 i386 3.12.2-1 [2156 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libpython3.12-dev i386 3.12.2-1 [5108 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libpython3-all-dev i386 3.11.6-1 [1072 B] Get: 65 http://deb.debian.org/debian trixie/main i386 python3-packaging all 23.2-1 [44.8 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 python3-pyproject-hooks all 1.0.0-2 [10.6 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 python3-toml all 0.10.2-1 [16.2 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 python3-wheel all 0.43.0-1 [52.5 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 python3-build all 1.1.1-1 [32.5 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 pybuild-plugin-pyproject all 6.20240310 [10.9 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.2-1 [653 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.11.6-1 [1060 B] Get: 74 http://deb.debian.org/debian trixie/main i386 python3.11-dev i386 3.11.8-1 [509 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 python3-dev i386 3.11.6-1 [26.1 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 python3.12-dev i386 3.12.2-1 [507 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 python3-all-dev i386 3.11.6-1 [1080 B] Get: 78 http://deb.debian.org/debian trixie/main i386 python3-typing-extensions all 4.10.0-1 [66.2 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 python3-xopen all 1.7.0-2 [16.9 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 python3-dnaio i386 1.2.0-2 [116 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 82 http://deb.debian.org/debian trixie/main i386 python3-pluggy all 1.4.0-1 [26.2 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 python3-pytest all 7.4.4-3 [239 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 python3-pytest-mock all 3.12.0-1.1 [17.6 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 python3-pytest-timeout all 2.3.1-1 [21.9 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 python3-setuptools-scm all 8.0.4-2 [39.5 kB] Fetched 55.8 MB in 2s (32.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package pigz. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19876 files and directories currently installed.) Preparing to unpack .../archives/pigz_2.8-1_i386.deb ... Unpacking pigz (2.8-1) ... Selecting previously unselected package libpython3.11-minimal:i386. Preparing to unpack .../libpython3.11-minimal_3.11.8-1_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.8-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.5.0-2+b2_i386.deb ... 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Not building database; man-db/auto-update is not 'true'. Setting up libpython3.12:i386 (3.12.2-1) ... Setting up libpython3-stdlib:i386 (3.11.6-1) ... Setting up python3.11 (3.11.8-1) ... Setting up libpython3.11:i386 (3.11.8-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.6-1) ... Setting up libpython3.12-dev:i386 (3.12.2-1) ... Setting up python3-wheel (0.43.0-1) ... Setting up python3-packaging (23.2-1) ... Setting up python3-pyproject-hooks (1.0.0-2) ... Setting up libpython3.11-dev:i386 (3.11.8-1) ... Setting up python3.12-dev (3.12.2-1) ... Setting up cython3 (3.0.8-1) ... Setting up python3-typing-extensions (4.10.0-1) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up python3-pluggy (1.4.0-1) ... Setting up python3-build (1.1.1-1) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up python3-iniconfig (1.1.1-2) ... Setting up libpython3-dev:i386 (3.11.6-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3.11-dev (3.11.8-1) ... Setting up python3-pytest (7.4.4-3) ... Setting up python3-all (3.11.6-1) ... Setting up python3-setuptools-scm (8.0.4-2) ... Setting up python3-xopen (1.7.0-2) ... Setting up libpython3-all-dev:i386 (3.11.6-1) ... Setting up python3-dev (3.11.6-1) ... Setting up python3-pytest-mock (3.12.0-1.1) ... Setting up python3-dnaio (1.2.0-2) ... Setting up dh-python (6.20240310) ... Setting up python3-all-dev (3.11.6-1) ... Setting up python3-pytest-timeout (2.3.1-1) ... Setting up pybuild-plugin-pyproject (6.20240310) ... Processing triggers for libc-bin (2.37-15) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-cutadapt-4.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cutadapt_4.7-2_source.changes dpkg-buildpackage: info: source package python-cutadapt dpkg-buildpackage: info: source version 4.7-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:305: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.12_cutadapt * Building wheel... running bdist_wheel running build running build_py creating build creating build/lib.linux-i686-cpython-312 creating build/lib.linux-i686-cpython-312/cutadapt copying src/cutadapt/modifiers.py -> build/lib.linux-i686-cpython-312/cutadapt copying src/cutadapt/adapters.py -> build/lib.linux-i686-cpython-312/cutadapt copying src/cutadapt/align.py -> build/lib.linux-i686-cpython-312/cutadapt copying src/cutadapt/runners.py -> build/lib.linux-i686-cpython-312/cutadapt copying src/cutadapt/pipeline.py -> build/lib.linux-i686-cpython-312/cutadapt copying src/cutadapt/kmer_heuristic.py -> build/lib.linux-i686-cpython-312/cutadapt copying src/cutadapt/cli.py -> build/lib.linux-i686-cpython-312/cutadapt copying src/cutadapt/parser.py -> build/lib.linux-i686-cpython-312/cutadapt copying src/cutadapt/_version.py -> build/lib.linux-i686-cpython-312/cutadapt copying src/cutadapt/predicates.py -> build/lib.linux-i686-cpython-312/cutadapt copying src/cutadapt/log.py -> build/lib.linux-i686-cpython-312/cutadapt copying src/cutadapt/__init__.py -> build/lib.linux-i686-cpython-312/cutadapt copying src/cutadapt/__main__.py -> build/lib.linux-i686-cpython-312/cutadapt copying src/cutadapt/tokenizer.py -> build/lib.linux-i686-cpython-312/cutadapt copying src/cutadapt/report.py -> build/lib.linux-i686-cpython-312/cutadapt copying src/cutadapt/statistics.py -> build/lib.linux-i686-cpython-312/cutadapt copying src/cutadapt/utils.py -> build/lib.linux-i686-cpython-312/cutadapt copying src/cutadapt/steps.py -> build/lib.linux-i686-cpython-312/cutadapt copying src/cutadapt/json.py -> build/lib.linux-i686-cpython-312/cutadapt copying src/cutadapt/_match_tables.py -> build/lib.linux-i686-cpython-312/cutadapt copying src/cutadapt/files.py -> build/lib.linux-i686-cpython-312/cutadapt running egg_info creating src/cutadapt.egg-info writing src/cutadapt.egg-info/PKG-INFO writing dependency_links to src/cutadapt.egg-info/dependency_links.txt writing entry points to src/cutadapt.egg-info/entry_points.txt writing requirements to src/cutadapt.egg-info/requires.txt writing top-level names to src/cutadapt.egg-info/top_level.txt writing manifest file 'src/cutadapt.egg-info/SOURCES.txt' reading manifest file 'src/cutadapt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'CITATION' warning: no files found matching 'src/cutadapt/*.c' adding license file 'LICENSE' writing manifest file 'src/cutadapt.egg-info/SOURCES.txt' running build_ext Compiling src/cutadapt/_align.pyx because it changed. [1/1] Cythonizing src/cutadapt/_align.pyx building 'cutadapt._align' extension creating build/temp.linux-i686-cpython-312 creating build/temp.linux-i686-cpython-312/src creating build/temp.linux-i686-cpython-312/src/cutadapt i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c src/cutadapt/_align.c -o build/temp.linux-i686-cpython-312/src/cutadapt/_align.o In function '__pyx_pf_8cutadapt_6_align_7Aligner_12locate', inlined from '__pyx_pw_8cutadapt_6_align_7Aligner_13locate' at src/cutadapt/_align.c:6582:13: src/cutadapt/_align.c:7553:10: warning: '__pyx_v_origin' may be used uninitialized [-Wmaybe-uninitialized] 7553 | if (!__pyx_t_13) { | ^ src/cutadapt/_align.c: In function '__pyx_pw_8cutadapt_6_align_7Aligner_13locate': src/cutadapt/_align.c:6619:7: note: '__pyx_v_origin' was declared here 6619 | int __pyx_v_origin; | ^~~~~~~~~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/src/cutadapt/_align.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-312/cutadapt/_align.cpython-312-i386-linux-gnu.so Compiling src/cutadapt/qualtrim.pyx because it changed. [1/1] Cythonizing src/cutadapt/qualtrim.pyx building 'cutadapt.qualtrim' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c src/cutadapt/qualtrim.c -o build/temp.linux-i686-cpython-312/src/cutadapt/qualtrim.o i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/src/cutadapt/qualtrim.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-312/cutadapt/qualtrim.cpython-312-i386-linux-gnu.so /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-cutadapt-4.7/src/cutadapt/info.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling src/cutadapt/info.pyx because it changed. [1/1] Cythonizing src/cutadapt/info.pyx building 'cutadapt.info' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c src/cutadapt/info.c -o build/temp.linux-i686-cpython-312/src/cutadapt/info.o i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/src/cutadapt/info.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-312/cutadapt/info.cpython-312-i386-linux-gnu.so Compiling src/cutadapt/_kmer_finder.pyx because it changed. [1/1] Cythonizing src/cutadapt/_kmer_finder.pyx building 'cutadapt._kmer_finder' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c src/cutadapt/_kmer_finder.c -o build/temp.linux-i686-cpython-312/src/cutadapt/_kmer_finder.o i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/src/cutadapt/_kmer_finder.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-312/cutadapt/_kmer_finder.cpython-312-i386-linux-gnu.so installing to build/bdist.linux-i686/wheel running install running install_lib creating build/bdist.linux-i686 creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/modifiers.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/adapters.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/align.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/runners.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/pipeline.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/kmer_heuristic.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/_align.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/cli.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/parser.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/_version.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/info.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/predicates.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/log.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/qualtrim.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/__init__.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/__main__.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/tokenizer.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/report.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/statistics.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/utils.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/steps.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/json.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/_kmer_finder.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/_match_tables.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-312/cutadapt/files.py -> build/bdist.linux-i686/wheel/cutadapt running install_egg_info Copying src/cutadapt.egg-info to build/bdist.linux-i686/wheel/cutadapt-4.7.egg-info running install_scripts creating build/bdist.linux-i686/wheel/cutadapt-4.7.dist-info/WHEEL creating '/build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.12_cutadapt/.tmp-3w0pja28/cutadapt-4.7-cp312-cp312-linux_i686.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'cutadapt/__init__.py' adding 'cutadapt/__main__.py' adding 'cutadapt/_align.cpython-312-i386-linux-gnu.so' adding 'cutadapt/_kmer_finder.cpython-312-i386-linux-gnu.so' adding 'cutadapt/_match_tables.py' adding 'cutadapt/_version.py' adding 'cutadapt/adapters.py' adding 'cutadapt/align.py' adding 'cutadapt/cli.py' adding 'cutadapt/files.py' adding 'cutadapt/info.cpython-312-i386-linux-gnu.so' adding 'cutadapt/json.py' adding 'cutadapt/kmer_heuristic.py' adding 'cutadapt/log.py' adding 'cutadapt/modifiers.py' adding 'cutadapt/parser.py' adding 'cutadapt/pipeline.py' adding 'cutadapt/predicates.py' adding 'cutadapt/qualtrim.cpython-312-i386-linux-gnu.so' adding 'cutadapt/report.py' adding 'cutadapt/runners.py' adding 'cutadapt/statistics.py' adding 'cutadapt/steps.py' adding 'cutadapt/tokenizer.py' adding 'cutadapt/utils.py' adding 'cutadapt-4.7.dist-info/LICENSE' adding 'cutadapt-4.7.dist-info/METADATA' adding 'cutadapt-4.7.dist-info/WHEEL' adding 'cutadapt-4.7.dist-info/entry_points.txt' adding 'cutadapt-4.7.dist-info/top_level.txt' adding 'cutadapt-4.7.dist-info/RECORD' removing build/bdist.linux-i686/wheel Successfully built cutadapt-4.7-cp312-cp312-linux_i686.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module I: pybuild plugin_pyproject:129: Building wheel for python3.11 with "build" module I: pybuild base:305: python3.11 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.11_cutadapt * Building wheel... running bdist_wheel running build running build_py creating build/lib.linux-i686-cpython-311 creating build/lib.linux-i686-cpython-311/cutadapt copying src/cutadapt/modifiers.py -> build/lib.linux-i686-cpython-311/cutadapt copying src/cutadapt/adapters.py -> build/lib.linux-i686-cpython-311/cutadapt copying src/cutadapt/align.py -> build/lib.linux-i686-cpython-311/cutadapt copying src/cutadapt/runners.py -> build/lib.linux-i686-cpython-311/cutadapt copying src/cutadapt/pipeline.py -> build/lib.linux-i686-cpython-311/cutadapt copying src/cutadapt/kmer_heuristic.py -> build/lib.linux-i686-cpython-311/cutadapt copying src/cutadapt/cli.py -> build/lib.linux-i686-cpython-311/cutadapt copying src/cutadapt/parser.py -> build/lib.linux-i686-cpython-311/cutadapt copying src/cutadapt/_version.py -> build/lib.linux-i686-cpython-311/cutadapt copying src/cutadapt/predicates.py -> build/lib.linux-i686-cpython-311/cutadapt copying src/cutadapt/log.py -> build/lib.linux-i686-cpython-311/cutadapt copying src/cutadapt/__init__.py -> build/lib.linux-i686-cpython-311/cutadapt copying src/cutadapt/__main__.py -> build/lib.linux-i686-cpython-311/cutadapt copying src/cutadapt/tokenizer.py -> build/lib.linux-i686-cpython-311/cutadapt copying src/cutadapt/report.py -> build/lib.linux-i686-cpython-311/cutadapt copying src/cutadapt/statistics.py -> build/lib.linux-i686-cpython-311/cutadapt copying src/cutadapt/utils.py -> build/lib.linux-i686-cpython-311/cutadapt copying src/cutadapt/steps.py -> build/lib.linux-i686-cpython-311/cutadapt copying src/cutadapt/json.py -> build/lib.linux-i686-cpython-311/cutadapt copying src/cutadapt/_match_tables.py -> build/lib.linux-i686-cpython-311/cutadapt copying src/cutadapt/files.py -> build/lib.linux-i686-cpython-311/cutadapt running egg_info writing src/cutadapt.egg-info/PKG-INFO writing dependency_links to src/cutadapt.egg-info/dependency_links.txt writing entry points to src/cutadapt.egg-info/entry_points.txt writing requirements to src/cutadapt.egg-info/requires.txt writing top-level names to src/cutadapt.egg-info/top_level.txt reading manifest file 'src/cutadapt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'CITATION' adding license file 'LICENSE' writing manifest file 'src/cutadapt.egg-info/SOURCES.txt' running build_ext building 'cutadapt._align' extension creating build/temp.linux-i686-cpython-311 creating build/temp.linux-i686-cpython-311/src creating build/temp.linux-i686-cpython-311/src/cutadapt i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c src/cutadapt/_align.c -o build/temp.linux-i686-cpython-311/src/cutadapt/_align.o In function '__pyx_pf_8cutadapt_6_align_7Aligner_12locate', inlined from '__pyx_pw_8cutadapt_6_align_7Aligner_13locate' at src/cutadapt/_align.c:6582:13: src/cutadapt/_align.c:7553:10: warning: '__pyx_v_origin' may be used uninitialized [-Wmaybe-uninitialized] 7553 | if (!__pyx_t_13) { | ^ src/cutadapt/_align.c: In function '__pyx_pw_8cutadapt_6_align_7Aligner_13locate': src/cutadapt/_align.c:6619:7: note: '__pyx_v_origin' was declared here 6619 | int __pyx_v_origin; | ^~~~~~~~~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/src/cutadapt/_align.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-311/cutadapt/_align.cpython-311-i386-linux-gnu.so building 'cutadapt.qualtrim' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c src/cutadapt/qualtrim.c -o build/temp.linux-i686-cpython-311/src/cutadapt/qualtrim.o i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/src/cutadapt/qualtrim.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-311/cutadapt/qualtrim.cpython-311-i386-linux-gnu.so building 'cutadapt.info' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c src/cutadapt/info.c -o build/temp.linux-i686-cpython-311/src/cutadapt/info.o i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/src/cutadapt/info.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-311/cutadapt/info.cpython-311-i386-linux-gnu.so building 'cutadapt._kmer_finder' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c src/cutadapt/_kmer_finder.c -o build/temp.linux-i686-cpython-311/src/cutadapt/_kmer_finder.o i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/src/cutadapt/_kmer_finder.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-311/cutadapt/_kmer_finder.cpython-311-i386-linux-gnu.so installing to build/bdist.linux-i686/wheel running install running install_lib creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/modifiers.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/_align.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/adapters.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/align.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/runners.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/pipeline.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/kmer_heuristic.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/cli.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/_kmer_finder.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/parser.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/_version.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/predicates.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/log.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/__init__.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/__main__.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/tokenizer.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/info.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/report.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/statistics.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/utils.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/steps.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/json.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/qualtrim.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/_match_tables.py -> build/bdist.linux-i686/wheel/cutadapt copying build/lib.linux-i686-cpython-311/cutadapt/files.py -> build/bdist.linux-i686/wheel/cutadapt running install_egg_info Copying src/cutadapt.egg-info to build/bdist.linux-i686/wheel/cutadapt-4.7.egg-info running install_scripts creating build/bdist.linux-i686/wheel/cutadapt-4.7.dist-info/WHEEL creating '/build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.11_cutadapt/.tmp-ek21urnx/cutadapt-4.7-cp311-cp311-linux_i686.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'cutadapt/__init__.py' adding 'cutadapt/__main__.py' adding 'cutadapt/_align.cpython-311-i386-linux-gnu.so' adding 'cutadapt/_kmer_finder.cpython-311-i386-linux-gnu.so' adding 'cutadapt/_match_tables.py' adding 'cutadapt/_version.py' adding 'cutadapt/adapters.py' adding 'cutadapt/align.py' adding 'cutadapt/cli.py' adding 'cutadapt/files.py' adding 'cutadapt/info.cpython-311-i386-linux-gnu.so' adding 'cutadapt/json.py' adding 'cutadapt/kmer_heuristic.py' adding 'cutadapt/log.py' adding 'cutadapt/modifiers.py' adding 'cutadapt/parser.py' adding 'cutadapt/pipeline.py' adding 'cutadapt/predicates.py' adding 'cutadapt/qualtrim.cpython-311-i386-linux-gnu.so' adding 'cutadapt/report.py' adding 'cutadapt/runners.py' adding 'cutadapt/statistics.py' adding 'cutadapt/steps.py' adding 'cutadapt/tokenizer.py' adding 'cutadapt/utils.py' adding 'cutadapt-4.7.dist-info/LICENSE' adding 'cutadapt-4.7.dist-info/METADATA' adding 'cutadapt-4.7.dist-info/WHEEL' adding 'cutadapt-4.7.dist-info/entry_points.txt' adding 'cutadapt-4.7.dist-info/top_level.txt' adding 'cutadapt-4.7.dist-info/RECORD' removing build/bdist.linux-i686/wheel Successfully built cutadapt-4.7-cp311-cp311-linux_i686.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.11 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:305: cd /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.12_cutadapt/build; python3.12 -m pytest -k 'not test_run_cutadapt_process' ============================= test session starts ============================== platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 rootdir: /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.12_cutadapt/build configfile: pyproject.toml testpaths: tests plugins: timeout-2.3.1, mock-3.12.0 collected 669 items / 1 deselected / 668 selected tests/test_adapters.py ......................................... [ 6%] tests/test_align.py .................................................... [ 13%] ... [ 14%] tests/test_api.py ...... [ 15%] tests/test_command.py ........... [ 16%] tests/test_commandline.py .............................................. [ 23%] ........................................................................ [ 34%] .............................................................. [ 43%] tests/test_files.py ......... [ 45%] tests/test_kmer_finder.py .................... [ 48%] tests/test_kmer_heuristic.py ............... [ 50%] tests/test_main.py .... [ 51%] tests/test_modifiers.py ....................................... [ 56%] tests/test_paired.py ................................................... [ 64%] ........................................................................ [ 75%] ....................................................... [ 83%] tests/test_parser.py ................................................. [ 90%] tests/test_predicates.py ................. [ 93%] tests/test_qualtrim.py ............................ [ 97%] tests/test_report.py .. [ 97%] tests/test_stats.py ... [ 98%] tests/test_testutils.py .. [ 98%] tests/test_tokenizer.py .. [ 98%] tests/test_trim.py ... [ 99%] tests/test_utils.py .... [100%] ====================== 668 passed, 1 deselected in 31.42s ====================== I: pybuild base:305: cd /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.11_cutadapt/build; python3.11 -m pytest -k 'not test_run_cutadapt_process' ============================= test session starts ============================== platform linux -- Python 3.11.8, pytest-7.4.4, pluggy-1.4.0 rootdir: /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.11_cutadapt/build configfile: pyproject.toml testpaths: tests plugins: timeout-2.3.1, mock-3.12.0 collected 669 items / 1 deselected / 668 selected tests/test_adapters.py ......................................... [ 6%] tests/test_align.py .................................................... [ 13%] ... [ 14%] tests/test_api.py ...... [ 15%] tests/test_command.py ........... [ 16%] tests/test_commandline.py .............................................. [ 23%] ........................................................................ [ 34%] .............................................................. [ 43%] tests/test_files.py ......... [ 45%] tests/test_kmer_finder.py .................... [ 48%] tests/test_kmer_heuristic.py ............... [ 50%] tests/test_main.py .... [ 51%] tests/test_modifiers.py ....................................... [ 56%] tests/test_paired.py ................................................... [ 64%] ........................................................................ [ 75%] ....................................................... [ 83%] tests/test_parser.py ................................................. [ 90%] tests/test_predicates.py ................. [ 93%] tests/test_qualtrim.py ............................ [ 97%] tests/test_report.py .. [ 97%] tests/test_stats.py ... [ 98%] tests/test_testutils.py .. [ 98%] tests/test_tokenizer.py .. [ 98%] tests/test_trim.py ... [ 99%] tests/test_utils.py .... [100%] ====================== 668 passed, 1 deselected in 29.97s ====================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir I: pybuild plugin_pyproject:178: Copying package built for python3.11 to destdir debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/python-cutadapt-4.7' mkdir -p debian/cutadapt/usr/bin mv debian/python3-cutadapt/usr/bin/cutadapt debian/cutadapt/usr/bin/ make[1]: Leaving directory '/build/reproducible-path/python-cutadapt-4.7' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package cutadapt: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-cutadapt' in '../python3-cutadapt_4.7-2_i386.deb'. dpkg-deb: building package 'cutadapt' in '../cutadapt_4.7-2_all.deb'. dpkg-deb: building package 'python3-cutadapt-dbgsym' in '../python3-cutadapt-dbgsym_4.7-2_i386.deb'. dpkg-genbuildinfo --build=binary -O../python-cutadapt_4.7-2_i386.buildinfo dpkg-genchanges --build=binary -O../python-cutadapt_4.7-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/26068 and its subdirectories I: Current time: Tue Apr 2 02:33:27 -12 2024 I: pbuilder-time-stamp: 1712068407 Tue Apr 2 14:33:28 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Tue Apr 2 14:33:28 UTC 2024 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Tue Apr 2 14:35:32 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. Tue Apr 2 14:35:32 UTC 2024 I: python-cutadapt_4.7-2_i386.changes: Format: 1.8 Date: Wed, 27 Mar 2024 10:00:57 +0100 Source: python-cutadapt Binary: cutadapt python3-cutadapt python3-cutadapt-dbgsym Architecture: all i386 Version: 4.7-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: cutadapt - Clean biological sequences from high-throughput sequencing reads python3-cutadapt - Clean biological sequences from high-throughput sequencing reads Changes: python-cutadapt (4.7-2) unstable; urgency=medium . * Team upload. * d/control: need python3-dnaio of at least version 1.2. * Allow autopkgtests to be skipped if their dependencies are installable. Checksums-Sha1: d7beec18ff0268e30ae5b4c2dcd6dd91d1716af2 25132 cutadapt_4.7-2_all.deb 2090d74069320fd8e27992c79ebd43d04f67252e 7526 python-cutadapt_4.7-2_i386.buildinfo b7dbe0c405406f934f700bd804060b60461417b9 1241552 python3-cutadapt-dbgsym_4.7-2_i386.deb 8c0c48714b5f7f3df60190645c7c6d02bbb240b4 270540 python3-cutadapt_4.7-2_i386.deb Checksums-Sha256: b1b61bfcebb069c1a4d741f2e57883178ac57f878be94d59fa24566a27d362c5 25132 cutadapt_4.7-2_all.deb 5918028041c29426b46c23b97f179f5c8d4f7700e5a2f4c0f8f58f2b1e862050 7526 python-cutadapt_4.7-2_i386.buildinfo ef72877810623b96bc300958e7c2ed51fff0ba7fd4a6b9b9efce302eed959c5b 1241552 python3-cutadapt-dbgsym_4.7-2_i386.deb 856e3aef4a38713193b61c745ba7fbfea747043c6ab048fba2068c5e5f9b3db7 270540 python3-cutadapt_4.7-2_i386.deb Files: 9c325f7d6eb1f3eece3d034363c26486 25132 science optional cutadapt_4.7-2_all.deb ea323ba693741548b0dc8627d804398d 7526 python optional python-cutadapt_4.7-2_i386.buildinfo 40b602c7b9cd76271b06fe50db626a7c 1241552 debug optional python3-cutadapt-dbgsym_4.7-2_i386.deb c2d057138e6eb90bb29629eeb44b4553 270540 python optional python3-cutadapt_4.7-2_i386.deb Tue Apr 2 14:35:33 UTC 2024 I: diffoscope 262 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_7-20806.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.4PQG3BZE/python-cutadapt_4.7-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.4PQG3BZE/python-cutadapt_4.7-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.4PQG3BZE/python-cutadapt_4.7-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.4PQG3BZE/b1/python-cutadapt_4.7-2_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.4PQG3BZE/b2/python-cutadapt_4.7-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.342s) 0.342s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.031s) 0.031s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 635ms CPU time consumed: 635ms Tue Apr 2 14:35:34 UTC 2024 I: diffoscope 262 found no differences in the changes files, and a .buildinfo file also exists. Tue Apr 2 14:35:34 UTC 2024 I: python-cutadapt from trixie built successfully and reproducibly on i386. Tue Apr 2 14:35:36 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Apr 2 14:35:36 UTC 2024 I: Submitting 12K b1/python-cutadapt_4.7-2_i386.buildinfo.asc Tue Apr 2 14:35:38 UTC 2024 I: Submitting 12K b2/python-cutadapt_4.7-2_i386.buildinfo.asc Tue Apr 2 14:35:38 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Apr 2 14:35:38 UTC 2024 I: Done submitting .buildinfo files. Tue Apr 2 14:35:38 UTC 2024 I: Removing signed python-cutadapt_4.7-2_i386.buildinfo.asc files: removed './b1/python-cutadapt_4.7-2_i386.buildinfo.asc' removed './b2/python-cutadapt_4.7-2_i386.buildinfo.asc'