Fri Nov 8 22:08:33 UTC 2024 I: starting to build python-cobra/trixie/i386 on jenkins on '2024-11-08 22:08' Fri Nov 8 22:08:33 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_12/27526/console.log Fri Nov 8 22:08:33 UTC 2024 I: Downloading source for trixie/python-cobra=0.29.1-1 --2024-11-08 22:08:33-- http://deb.debian.org/debian/pool/main/p/python-cobra/python-cobra_0.29.1-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3106 (3.0K) [text/prs.lines.tag] Saving to: ‘python-cobra_0.29.1-1.dsc’ 0K ... 100% 342M=0s 2024-11-08 22:08:33 (342 MB/s) - ‘python-cobra_0.29.1-1.dsc’ saved [3106/3106] Fri Nov 8 22:08:33 UTC 2024 I: python-cobra_0.29.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-cobra Binary: python3-cobra, python-cobra-data Architecture: any-amd64 any-i386 arm64 armel armhf mips mips64el mipsel ppc64el alpha hppa m68k powerpc powerpcspe ppc64 sh4 sparc64 all Version: 0.29.1-1 Maintainer: Debian Med Packaging Team Uploaders: Afif Elghraoui Homepage: https://opencobra.github.io/cobrapy/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-cobra Vcs-Git: https://salsa.debian.org/med-team/python-cobra.git Testsuite: autopkgtest Testsuite-Triggers: python3-jsonschema, python3-pytest, python3-pytest-benchmark, python3-pytest-mock, python3-sbml5, python3-scipy, quilt Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-importlib-resources, python3-numpy, python3-optlang (>= 1.7.0-1~), python3-ruamel.yaml, python3-pandas, python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 5.0.8-1~), python3-tabulate, python3-sbml5, cython3, python3-pytest , python3-pytest-benchmark , python3-pytest-mock , python3-jsonschema , libsbml5-dev , python3-matplotlib , python3-platformdirs , python3-diskcache , python3-httpx , python3-pydantic , python3-rich Package-List: python-cobra-data deb python optional arch=all python3-cobra deb python optional arch=any-amd64,arm64,armel,armhf,any-i386,mips,mips64el,mipsel,ppc64el,alpha,hppa,m68k,powerpc,powerpcspe,ppc64,sh4,sparc64,x32 Checksums-Sha1: 3c26cc11421692c1d151377cffe83b23eac4a1a7 3651233 python-cobra_0.29.1.orig.tar.gz 3d5c6f3ccf5a6849d89cf45da24dd1538c2a6c43 9084 python-cobra_0.29.1-1.debian.tar.xz Checksums-Sha256: 2c60269959e212525ca79e85d990dba48c92e30db5795446f48e777912fc92a2 3651233 python-cobra_0.29.1.orig.tar.gz 480a90c0ea433963093b5c4c6a15e689812d8026000cc84d085b98f8c3f8308e 9084 python-cobra_0.29.1-1.debian.tar.xz Files: 2100d8959c33d2f04185dfcaab39c9e0 3651233 python-cobra_0.29.1.orig.tar.gz 9ad74c2e4d07b753324a3d57bb16cc56 9084 python-cobra_0.29.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmbwGoIRHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBrIhQ//Ysswf4d6YoOHW5Fdokqr1D01yR3x9yIq 5LVK81B20K+2pyLDrSFNBHBiSJ4dYXO2CdJOIPrCRu1QEMKSuGvNbrbUP2zu8ADl ar2y7E2Yg5SRHkqs3lfbIuY8o8nDhX5P42BfeSpodQtWPIvxIqOu854AaE2JAK88 PkdeB1BgaEZaii8ov3iaUJGfmgbzeh1sEP+2q90CTLPRpFcAwXPbiPq0O6bcKIzA p3fQPEUAb18IVtOaByNcKzyLHGV9+WLvt/w2qFzTIyE2XvOaTsoWfnIl4IcxXYGS bJBbsQastLfPOw8es9nQj76MC7L6o9EUOrTaG0WyxqiEHE/tkshWKgyGyz5ZJoYr zFLqELAGxwoqlTliNBCfHi3nwQ+2fCzwl3gZF3VW6mmR0YngkHLf3tOt4L+3dqnf iAcI3b5KhcYFrLap/u6EdcxR8tQqGneeh4giK7xfI3JKUGBQesukINqOAes2MG4f rwIESXSz+Cnc/Zb4KiFF3YWBDnxTpIyc0Jq8Qf4hCfmMffv1mPkF3uagz1DsAfGi bJGXWocP4M2dz64XITi3Ba+tT/umcUWBEY8XyVtFkSFR0GjrPyx8qvOefamHQ3J3 uj9sv3q1q6i2I2W+FVSleA21a6Hc/G5uILEyFtaPKnTGxGrnm7DCk/BAa9tGE6mu 3/VRQjiAryc= =3+tc -----END PGP SIGNATURE----- Fri Nov 8 22:08:33 UTC 2024 I: Checking whether the package is not for us Fri Nov 8 22:08:34 UTC 2024 I: Starting 1st build on remote node ionos12-i386.debian.net. Fri Nov 8 22:08:34 UTC 2024 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Fri Nov 8 22:18:32 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Nov 8 10:08:37 -12 2024 I: pbuilder-time-stamp: 1731103717 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-cobra_0.29.1-1.dsc] I: copying [./python-cobra_0.29.1.orig.tar.gz] I: copying [./python-cobra_0.29.1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Sep 22 13:24:18 2024 gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A gpgv: issuer "tchet@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-cobra_0.29.1-1.dsc: no acceptable signature found dpkg-source: info: extracting python-cobra in python-cobra-0.29.1 dpkg-source: info: unpacking python-cobra_0.29.1.orig.tar.gz dpkg-source: info: unpacking python-cobra_0.29.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying mathjax.patch dpkg-source: info: applying xfail_test_show_versions.patch dpkg-source: info: applying ignore_tests.patch dpkg-source: info: applying 32-bit-test.patch dpkg-source: info: applying no_future_dependency.patch dpkg-source: info: applying remove-appdirs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/25245/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='48765ca55dd24a0cbc9ae5f426dd359d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='25245' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.KJc2GHLf/pbuilderrc_4odt --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.KJc2GHLf/b1 --logfile b1/build.log python-cobra_0.29.1-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/25245/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, libglpk-dev, python3-dev, python3-setuptools, python3-depinfo, python3-importlib-resources, python3-numpy, python3-optlang (>= 1.7.0-1~), python3-ruamel.yaml, python3-pandas, python3-pip, python3-pipdeptree, python3-requests, python3-swiglpk (>= 5.0.8-1~), python3-tabulate, python3-sbml5, cython3, python3-pytest, python3-pytest-benchmark, python3-pytest-mock, python3-jsonschema, libsbml5-dev, python3-matplotlib, python3-platformdirs, python3-diskcache, python3-httpx, python3-pydantic, python3-rich dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libglpk-dev; however: Package libglpk-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-depinfo; however: Package python3-depinfo is not installed. pbuilder-satisfydepends-dummy depends on python3-importlib-resources; however: Package python3-importlib-resources is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-optlang (>= 1.7.0-1~); however: Package python3-optlang is not installed. pbuilder-satisfydepends-dummy depends on python3-ruamel.yaml; however: Package python3-ruamel.yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pip; however: Package python3-pip is not installed. pbuilder-satisfydepends-dummy depends on python3-pipdeptree; however: Package python3-pipdeptree is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-swiglpk (>= 5.0.8-1~); however: Package python3-swiglpk is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate; however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-sbml5; however: Package python3-sbml5 is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-benchmark; however: Package python3-pytest-benchmark is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-jsonschema; however: Package python3-jsonschema is not installed. pbuilder-satisfydepends-dummy depends on libsbml5-dev; however: Package libsbml5-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-platformdirs; however: Package python3-platformdirs is not installed. pbuilder-satisfydepends-dummy depends on python3-diskcache; however: Package python3-diskcache is not installed. pbuilder-satisfydepends-dummy depends on python3-httpx; however: Package python3-httpx is not installed. pbuilder-satisfydepends-dummy depends on python3-pydantic; however: Package python3-pydantic is not installed. pbuilder-satisfydepends-dummy depends on python3-rich; however: Package python3-rich is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libamd3{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbtf2{a} libcamd3{a} libccolamd3{a} libcholmod5{a} libcolamd3{a} libcom-err2{a} libcxsparse4{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libglpk-dev{a} libglpk40{a} libgmp-dev{a} libgmpxx4ldbl{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libklu2{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldl3{a} liblerc4{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libparu1{a} libpipeline1{a} libpng16-16t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libraqm0{a} librbio4{a} libreadline8t64{a} libsbml5-dev{a} libsbml5t64{a} libsharpyuv0{a} libspex3{a} libspqr4{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libumfpack6{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-annotated-types{a} python3-anyio{a} python3-appdirs{a} python3-attr{a} python3-autocommand{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-contourpy{a} python3-cpuinfo{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-depinfo{a} python3-dev{a} python3-diskcache{a} python3-dnspython{a} python3-email-validator{a} python3-fonttools{a} python3-fs{a} python3-h11{a} python3-httpcore{a} python3-httpx{a} python3-idna{a} python3-importlib-resources{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-markdown-it{a} python3-matplotlib{a} python3-mdurl{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-optlang{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pip{a} python3-pipdeptree{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pydantic{a} python3-pydantic-core{a} python3-pygments{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-benchmark{a} python3-pytest-mock{a} python3-referencing{a} python3-requests{a} python3-rich{a} python3-rpds-py{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-sbml5{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sniffio{a} python3-swiglpk{a} python3-sympy{a} python3-tabulate{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-unicodedata2{a} python3-urllib3{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.12-tk{a} python3.13-tk{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgraphblas-dev libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-cryptography python3-cssselect python3-elasticsearch python3-freezegun python3-graphviz python3-h2 python3-html5lib python3-jinja2 python3-json-pointer python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pygal python3-rfc3987 python3-tables python3-uritemplate python3-webcolors shared-mime-info wget xdg-user-dirs 0 packages upgraded, 224 newly installed, 0 to remove and 0 not upgraded. Need to get 144 MB of archives. After unpacking 634 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.7-2 [814 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.3-2 [107 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.7-2 [2236 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.1-1+b1 [23.4 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 12 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 libtirpc3t64 i386 1.3.4+ds-1.3+b1 [90.5 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libnsl2 i386 1.3.0-3+b3 [42.7 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-5 [173 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.7-2 [1966 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.7-2 [671 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main i386 python3 i386 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 openssl i386 3.3.2-2 [1387 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20240203 [158 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-9 [102 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libtcl8.6 i386 8.6.15+dfsg-2 [1103 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b5 [298 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libpng16-16t64 i386 1.6.44-2 [288 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libfreetype6 i386 2.13.3+dfsg-1 [464 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-core all 2.37-8 [840 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 fontconfig-config i386 2.15.0-1.1+b1 [318 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libfontconfig1 i386 2.15.0-1.1+b1 [402 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 libxau6 i386 1:1.0.11-1 [20.7 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 libxdmcp6 i386 1:1.1.2-3+b2 [24.9 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libxcb1 i386 1.17.0-2+b1 [148 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 libx11-data all 2:1.8.7-1 [328 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libx11-6 i386 2:1.8.7-1+b2 [823 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 libxrender1 i386 1:0.9.10-1.1+b2 [28.9 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 libxft2 i386 2.3.6-1+b2 [55.3 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libxext6 i386 2:1.3.4-1+b2 [52.6 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 x11-common all 1:7.7+23.1 [216 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libxss1 i386 1:1.2.3-1+b2 [17.3 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libtk8.6 i386 8.6.15-1 [833 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 tk8.6-blt2.5 i386 2.5.3+dfsg-7 [616 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 blt i386 2.5.3+dfsg-7 [6024 B] Get: 61 http://deb.debian.org/debian trixie/main i386 cython3 i386 3.0.11+dfsg-1 [2429 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-8 [517 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 68 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5+b1 [9583 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.1 [733 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 python3-zipp all 3.20.2-1 [10.3 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 python3-importlib-resources all 6.0.1-1 [21.7 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 84 http://deb.debian.org/debian trixie/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 74.1.2-2 [736 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20241024 [109 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 fonts-lyx all 2.4.2.1-1 [190 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 libsuitesparseconfig7 i386 1:7.8.3+dfsg-2 [24.0 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 libamd3 i386 1:7.8.3+dfsg-2 [43.5 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.0-3+b1 [143 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 libblas-dev i386 3.12.0-3+b1 [155 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 libbtf2 i386 1:7.8.3+dfsg-2 [25.8 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 libcamd3 i386 1:7.8.3+dfsg-2 [41.1 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 libccolamd3 i386 1:7.8.3+dfsg-2 [43.2 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 libcolamd3 i386 1:7.8.3+dfsg-2 [35.6 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14.2.0-6 [735 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.0-3+b1 [2196 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 libcholmod5 i386 1:7.8.3+dfsg-2 [733 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 libcxsparse4 i386 1:7.8.3+dfsg-2 [102 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.22-1 [48.1 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 libexpat1-dev i386 2.6.3-2 [165 kB] Get: 103 http://deb.debian.org/debian trixie/main i386 libfribidi0 i386 1.0.15-1 [72.4 kB] Get: 104 http://deb.debian.org/debian trixie/main i386 libglib2.0-0t64 i386 2.82.2-2 [1570 kB] Get: 105 http://deb.debian.org/debian trixie/main i386 libltdl7 i386 2.4.7-8 [395 kB] Get: 106 http://deb.debian.org/debian trixie/main i386 libglpk40 i386 5.0-1+b2 [422 kB] Get: 107 http://deb.debian.org/debian trixie/main i386 libgmpxx4ldbl i386 2:6.3.0+dfsg-2+b2 [330 kB] Get: 108 http://deb.debian.org/debian trixie/main i386 libgmp-dev i386 2:6.3.0+dfsg-2+b2 [661 kB] Get: 109 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Get: 110 http://deb.debian.org/debian trixie/main i386 libklu2 i386 1:7.8.3+dfsg-2 [95.5 kB] Get: 111 http://deb.debian.org/debian trixie/main i386 libldl3 i386 1:7.8.3+dfsg-2 [25.1 kB] Get: 112 http://deb.debian.org/debian trixie/main i386 libsuitesparse-mongoose3 i386 1:7.8.3+dfsg-2 [55.0 kB] Get: 113 http://deb.debian.org/debian trixie/main i386 libumfpack6 i386 1:7.8.3+dfsg-2 [323 kB] Get: 114 http://deb.debian.org/debian trixie/main i386 librbio4 i386 1:7.8.3+dfsg-2 [45.4 kB] Get: 115 http://deb.debian.org/debian trixie/main i386 libspqr4 i386 1:7.8.3+dfsg-2 [167 kB] Get: 116 http://deb.debian.org/debian trixie/main i386 libspex3 i386 1:7.8.3+dfsg-2 [70.1 kB] Get: 117 http://deb.debian.org/debian trixie/main i386 libparu1 i386 1:7.8.3+dfsg-2 [82.2 kB] Get: 118 http://deb.debian.org/debian trixie/main i386 liblapack-dev i386 3.12.0-3+b1 [4452 kB] Get: 119 http://deb.debian.org/debian trixie/main i386 libsuitesparse-dev i386 1:7.8.3+dfsg-2 [1719 kB] Get: 120 http://deb.debian.org/debian trixie/main i386 libglpk-dev i386 5.0-1+b2 [511 kB] Get: 121 http://deb.debian.org/debian trixie/main i386 libgraphite2-3 i386 1.3.14-2+b1 [77.8 kB] Get: 122 http://deb.debian.org/debian trixie/main i386 libharfbuzz0b i386 10.0.1-1 [503 kB] Get: 123 http://deb.debian.org/debian trixie/main i386 libimagequant0 i386 2.18.0-1+b2 [36.0 kB] Get: 124 http://deb.debian.org/debian trixie/main i386 libjbig0 i386 2.1-6.1+b2 [32.2 kB] Get: 125 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo i386 1:2.1.5-3+b1 [171 kB] Get: 126 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 127 http://deb.debian.org/debian trixie/main i386 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 128 http://deb.debian.org/debian trixie/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 129 http://deb.debian.org/debian trixie/main i386 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 130 http://deb.debian.org/debian trixie/main i386 liblbfgsb0 i386 3.0+dfsg.4-1+b2 [29.5 kB] Get: 131 http://deb.debian.org/debian trixie/main i386 liblcms2-2 i386 2.16-2 [171 kB] Get: 132 http://deb.debian.org/debian trixie/main i386 liblerc4 i386 4.0.0+ds-5 [191 kB] Get: 133 http://deb.debian.org/debian trixie/main i386 libopenjp2-7 i386 2.5.0-2+b4 [210 kB] Get: 134 http://deb.debian.org/debian trixie/main i386 libpython3.12t64 i386 3.12.7-2 [2169 kB] Get: 135 http://deb.debian.org/debian trixie/main i386 libpython3.12-dev i386 3.12.7-2 [5280 kB] Get: 136 http://deb.debian.org/debian trixie/main i386 libpython3-dev i386 3.12.6-1 [9956 B] Get: 137 http://deb.debian.org/debian trixie/main i386 libqhull-r8.0 i386 2020.2-6+b2 [259 kB] Get: 138 http://deb.debian.org/debian trixie/main i386 libraqm0 i386 0.10.1-1+b2 [14.8 kB] Get: 139 http://deb.debian.org/debian trixie/main i386 libsbml5t64 i386 5.20.2+dfsg-8+b1 [2307 kB] Get: 140 http://deb.debian.org/debian trixie/main i386 libsbml5-dev i386 5.20.2+dfsg-8+b1 [3351 kB] Get: 141 http://deb.debian.org/debian trixie/main i386 libsharpyuv0 i386 1.4.0-0.1+b1 [113 kB] Get: 142 http://deb.debian.org/debian trixie/main i386 libwebp7 i386 1.4.0-0.1+b1 [322 kB] Get: 143 http://deb.debian.org/debian trixie/main i386 libtiff6 i386 4.5.1+git230720-5 [339 kB] Get: 144 http://deb.debian.org/debian trixie/main i386 libwebpdemux2 i386 1.4.0-0.1+b1 [111 kB] Get: 145 http://deb.debian.org/debian trixie/main i386 libwebpmux3 i386 1.4.0-0.1+b1 [125 kB] Get: 146 http://deb.debian.org/debian trixie/main i386 libxslt1.1 i386 1.1.35-1.1+b1 [243 kB] Get: 147 http://deb.debian.org/debian trixie/main i386 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 148 http://deb.debian.org/debian trixie/main i386 python3-annotated-types all 0.7.0-1 [18.8 kB] Get: 149 http://deb.debian.org/debian trixie/main i386 python3-idna all 3.8-2 [41.6 kB] Get: 150 http://deb.debian.org/debian trixie/main i386 python3-sniffio all 1.3.1-1 [7120 B] Get: 151 http://deb.debian.org/debian trixie/main i386 python3-anyio all 4.4.0-1 [57.3 kB] Get: 152 http://deb.debian.org/debian trixie/main i386 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 153 http://deb.debian.org/debian trixie/main i386 python3-attr all 23.2.0-2 [65.5 kB] Get: 154 http://deb.debian.org/debian trixie/main i386 python3-brotli i386 1.1.0-2+b5 [319 kB] Get: 155 http://deb.debian.org/debian trixie/main i386 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 156 http://deb.debian.org/debian trixie/main i386 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 157 http://deb.debian.org/debian trixie/main i386 python3-charset-normalizer i386 3.4.0-1 [120 kB] Get: 158 http://deb.debian.org/debian trixie/main i386 python3-colorama all 0.4.6-4 [36.2 kB] Get: 159 http://deb.debian.org/debian trixie/main i386 python3-click all 8.1.7-2 [94.3 kB] Get: 160 http://deb.debian.org/debian trixie/main i386 python3-numpy i386 1:1.26.4+ds-11 [4299 kB] Get: 161 http://deb.debian.org/debian trixie/main i386 python3-contourpy i386 1.3.0-2 [223 kB] Get: 162 http://deb.debian.org/debian trixie/main i386 python3-cpuinfo all 9.0.0+git20221119-2 [23.4 kB] Get: 163 http://deb.debian.org/debian trixie/main i386 python3-cycler all 0.12.1-1 [9496 B] Get: 164 http://deb.debian.org/debian trixie/main i386 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 165 http://deb.debian.org/debian trixie/main i386 python3-decorator all 5.1.1-5 [15.1 kB] Get: 166 http://deb.debian.org/debian trixie/main i386 python3-depinfo i386 2.2.0-2 [11.5 kB] Get: 167 http://deb.debian.org/debian trixie/main i386 python3.12-dev i386 3.12.7-2 [505 kB] Get: 168 http://deb.debian.org/debian trixie/main i386 python3-dev i386 3.12.6-1 [26.1 kB] Get: 169 http://deb.debian.org/debian trixie/main i386 python3-diskcache all 5.6.3-1 [34.4 kB] Get: 170 http://deb.debian.org/debian trixie/main i386 python3-dnspython all 2.6.1-1 [161 kB] Get: 171 http://deb.debian.org/debian trixie/main i386 python3-email-validator all 2.2.0-1 [31.6 kB] Get: 172 http://deb.debian.org/debian trixie/main i386 python3-tz all 2024.1-2 [30.9 kB] Get: 173 http://deb.debian.org/debian trixie/main i386 python3-six all 1.16.0-7 [16.4 kB] Get: 174 http://deb.debian.org/debian trixie/main i386 python3-fs all 2.4.16-4 [95.4 kB] Get: 175 http://deb.debian.org/debian trixie/main i386 python3-lxml i386 5.3.0-1 [1239 kB] Get: 176 http://deb.debian.org/debian trixie/main i386 python3-lz4 i386 4.0.2+dfsg-1+b4 [25.2 kB] Get: 177 http://deb.debian.org/debian trixie/main i386 python3-scipy i386 1.13.1-5 [16.6 MB] Get: 178 http://deb.debian.org/debian trixie/main i386 python3-mpmath all 1.3.0-1 [419 kB] Get: 179 http://deb.debian.org/debian trixie/main i386 python3-sympy all 1.13.3-1 [4147 kB] Get: 180 http://deb.debian.org/debian trixie/main i386 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 181 http://deb.debian.org/debian trixie/main i386 python3-unicodedata2 i386 15.1.0+ds-1+b2 [297 kB] Get: 182 http://deb.debian.org/debian trixie/main i386 unicode-data all 15.1.0-1 [8547 kB] Get: 183 http://deb.debian.org/debian trixie/main i386 python3-fonttools i386 4.54.1-4 [1424 kB] Get: 184 http://deb.debian.org/debian trixie/main i386 python3-h11 all 0.14.0-1 [50.1 kB] Get: 185 http://deb.debian.org/debian trixie/main i386 python3-httpcore all 1.0.4-1 [44.5 kB] Get: 186 http://deb.debian.org/debian trixie/main i386 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get: 187 http://deb.debian.org/debian trixie/main i386 python3-mdurl all 0.1.2-1 [9444 B] Get: 188 http://deb.debian.org/debian trixie/main i386 python3-markdown-it all 3.0.0-2 [62.5 kB] Get: 189 http://deb.debian.org/debian trixie/main i386 python3-rich all 13.7.1-1 [201 kB] Get: 190 http://deb.debian.org/debian trixie/main i386 python3-httpx all 0.27.0-1 [76.8 kB] Get: 191 http://deb.debian.org/debian trixie/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 192 http://deb.debian.org/debian trixie/main i386 python3-rpds-py i386 0.20.1-1 [270 kB] Get: 193 http://deb.debian.org/debian trixie/main i386 python3-referencing all 0.35.1-1 [23.5 kB] Get: 194 http://deb.debian.org/debian trixie/main i386 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get: 195 http://deb.debian.org/debian trixie/main i386 python3-jsonschema all 4.19.2-5 [71.4 kB] Get: 196 http://deb.debian.org/debian trixie/main i386 python3-kiwisolver i386 1.4.7-2 [68.6 kB] Get: 197 http://deb.debian.org/debian trixie/main i386 python3-pil i386 10.4.0-1 [503 kB] Get: 198 http://deb.debian.org/debian trixie/main i386 python3.12-tk i386 3.12.7-2 [113 kB] Get: 199 http://deb.debian.org/debian trixie/main i386 python3.13-tk i386 3.13.0-1 [103 kB] Get: 200 http://deb.debian.org/debian trixie/main i386 python3-tk i386 3.12.6-1 [9428 B] Get: 201 http://deb.debian.org/debian trixie/main i386 python3-pil.imagetk i386 10.4.0-1 [79.6 kB] Get: 202 http://deb.debian.org/debian trixie/main i386 python3-pyparsing all 3.1.2-1 [146 kB] Get: 203 http://deb.debian.org/debian trixie/main i386 python3-packaging all 24.1-1 [45.8 kB] Get: 204 http://deb.debian.org/debian trixie/main i386 python3-matplotlib i386 3.8.3-3 [5569 kB] Get: 205 http://deb.debian.org/debian trixie/main i386 python3-swiglpk i386 5.0.10-2 [64.9 kB] Get: 206 http://deb.debian.org/debian trixie/main i386 python3-optlang all 1.8.2-2 [5375 kB] Get: 207 http://deb.debian.org/debian trixie/main i386 python3-pandas-lib i386 2.2.3+dfsg-5 [4263 kB] Get: 208 http://deb.debian.org/debian trixie/main i386 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 209 http://deb.debian.org/debian trixie/main i386 python3-wheel all 0.44.0-2 [53.4 kB] Get: 210 http://deb.debian.org/debian trixie/main i386 python3-pip all 24.3.1+dfsg-1 [1441 kB] Get: 211 http://deb.debian.org/debian trixie/main i386 python3-pipdeptree i386 2.2.0-3 [20.6 kB] Get: 212 http://deb.debian.org/debian trixie/main i386 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 213 http://deb.debian.org/debian trixie/main i386 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 214 http://deb.debian.org/debian trixie/main i386 python3-pydantic-core i386 2.23.4-2+b1 [1398 kB] Get: 215 http://deb.debian.org/debian trixie/main i386 python3-pydantic i386 2.9.2-2 [343 kB] Get: 216 http://deb.debian.org/debian trixie/main i386 python3-pytest all 8.3.3-1 [249 kB] Get: 217 http://deb.debian.org/debian trixie/main i386 python3-pytest-benchmark all 4.0.0-4 [43.5 kB] Get: 218 http://deb.debian.org/debian trixie/main i386 python3-pytest-mock all 3.14.0-2 [18.3 kB] Get: 219 http://deb.debian.org/debian trixie/main i386 python3-urllib3 all 2.0.7-2 [111 kB] Get: 220 http://deb.debian.org/debian trixie/main i386 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 221 http://deb.debian.org/debian trixie/main i386 python3-ruamel.yaml.clib i386 0.2.8+ds-2 [133 kB] Get: 222 http://deb.debian.org/debian trixie/main i386 python3-ruamel.yaml all 0.18.6+ds-3 [145 kB] Get: 223 http://deb.debian.org/debian trixie/main i386 python3-sbml5 i386 5.20.2+dfsg-8+b1 [3550 kB] Get: 224 http://deb.debian.org/debian trixie/main i386 python3-tabulate all 0.9.0-1 [45.9 kB] Fetched 144 MB in 6s (25.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-2_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.7-2) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.3-2_i386.deb ... Unpacking libexpat1:i386 (2.6.3-2) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-2_i386.deb ... Unpacking python3.12-minimal (3.12.7-2) ... Setting up libpython3.12-minimal:i386 (3.12.7-2) ... Setting up libexpat1:i386 (2.6.3-2) ... Setting up python3.12-minimal (3.12.7-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20276 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_i386.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../04-libkrb5support0_1.21.3-3_i386.deb ... Unpacking libkrb5support0:i386 (1.21.3-3) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../06-libk5crypto3_1.21.3-3_i386.deb ... Unpacking libk5crypto3:i386 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../07-libkeyutils1_1.6.3-4_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../08-libkrb5-3_1.21.3-3_i386.deb ... Unpacking libkrb5-3:i386 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:i386. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3 to /lib/i386-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3.0.0 to /lib/i386-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:i386. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_i386.deb ... Unpacking libnsl2:i386 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../14-libreadline8t64_8.2-5_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:i386. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-2_i386.deb ... Unpacking libpython3.12-stdlib:i386 (3.12.7-2) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-2_i386.deb ... Unpacking python3.12 (3.12.7-2) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21350 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_i386.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sensible-utils. 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Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.2-9_i386.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../011-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. 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Selecting previously unselected package libxau6:i386. Preparing to unpack .../026-libxau6_1%3a1.0.11-1_i386.deb ... Unpacking libxau6:i386 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../027-libxdmcp6_1%3a1.1.2-3+b2_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.2-3+b2) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../028-libxcb1_1.17.0-2+b1_i386.deb ... Unpacking libxcb1:i386 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../029-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) ... Selecting previously unselected package libx11-6:i386. Preparing to unpack .../030-libx11-6_2%3a1.8.7-1+b2_i386.deb ... Unpacking libx11-6:i386 (2:1.8.7-1+b2) ... Selecting previously unselected package libxrender1:i386. Preparing to unpack .../031-libxrender1_1%3a0.9.10-1.1+b2_i386.deb ... Unpacking libxrender1:i386 (1:0.9.10-1.1+b2) ... Selecting previously unselected package libxft2:i386. Preparing to unpack .../032-libxft2_2.3.6-1+b2_i386.deb ... Unpacking libxft2:i386 (2.3.6-1+b2) ... Selecting previously unselected package libxext6:i386. Preparing to unpack .../033-libxext6_2%3a1.3.4-1+b2_i386.deb ... Unpacking libxext6:i386 (2:1.3.4-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../034-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package libxss1:i386. Preparing to unpack .../035-libxss1_1%3a1.2.3-1+b2_i386.deb ... Unpacking libxss1:i386 (1:1.2.3-1+b2) ... Selecting previously unselected package libtk8.6:i386. Preparing to unpack .../036-libtk8.6_8.6.15-1_i386.deb ... Unpacking libtk8.6:i386 (8.6.15-1) ... Selecting previously unselected package tk8.6-blt2.5. Preparing to unpack .../037-tk8.6-blt2.5_2.5.3+dfsg-7_i386.deb ... Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ... Selecting previously unselected package blt. 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Selecting previously unselected package gettext. Preparing to unpack .../050-gettext_0.22.5-2_i386.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../051-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../052-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../053-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../054-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../055-python3-zipp_3.20.2-1_all.deb ... Unpacking python3-zipp (3.20.2-1) ... 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Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.8.3-3) ... Setting up openssl (3.3.2-2) ... Setting up libwebpmux3:i386 (1.4.0-0.1+b1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up libblas-dev:i386 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:i386 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... 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Setting up libglpk40:i386 (5.0-1+b2) ... Setting up librbio4:i386 (1:7.8.3+dfsg-2) ... Setting up liblapack-dev:i386 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up libccolamd3:i386 (1:7.8.3+dfsg-2) ... Setting up libreadline8t64:i386 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libxslt1.1:i386 (1.1.35-1.1+b1) ... Setting up libharfbuzz0b:i386 (10.0.1-1) ... Setting up libxss1:i386 (1:1.2.3-1+b2) ... Setting up libfontconfig1:i386 (2.15.0-1.1+b1) ... Setting up liblbfgsb0:i386 (3.0+dfsg.4-1+b2) ... Setting up libcholmod5:i386 (1:7.8.3+dfsg-2) ... Setting up libxft2:i386 (2.3.6-1+b2) ... Setting up libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Setting up libspqr4:i386 (1:7.8.3+dfsg-2) ... 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Setting up python3-wheel (0.44.0-2) ... Setting up python3-annotated-types (0.7.0-1) ... Setting up python3-sbml5 (5.20.2+dfsg-8+b1) ... Setting up python3-platformdirs (4.3.6-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-7) ... Setting up python3-pil:i386 (10.4.0-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.1-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up libglpk-dev:i386 (5.0-1+b2) ... Setting up python3-brotli (1.1.0-2+b5) ... Setting up python3-mdurl (0.1.2-1) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-2) ... Setting up python3-idna (3.8-2) ... Setting up python3.12-dev (3.12.7-2) ... Setting up cython3 (3.0.11+dfsg-1) ... Setting up python3-h11 (0.14.0-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pip (24.3.1+dfsg-1) ... Setting up python3-cpuinfo (9.0.0+git20221119-2) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-markdown-it (3.0.0-2) ... Setting up python3-rpds-py (0.20.1-1) ... Setting up python3-lxml:i386 (5.3.0-1) ... Setting up python3-dnspython (2.6.1-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-email-validator (2.2.0-1) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-diskcache (5.6.3-1) ... Setting up python3-pipdeptree (2.2.0-3) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-swiglpk (5.0.10-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-httpcore (1.0.4-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sniffio (1.3.1-1) ... Setting up python3-sympy (1.13.3-1) ... Setting up python3-attr (23.2.0-2) ... Setting up libpython3-dev:i386 (3.12.6-1) ... Setting up python3-pydantic-core (2.23.4-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-anyio (4.4.0-1) ... Setting up python3-importlib-resources (6.0.1-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-lz4 (4.0.2+dfsg-1+b4) ... Setting up python3-charset-normalizer (3.4.0-1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-unicodedata2 (15.1.0+ds-1+b2) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-ruamel.yaml.clib:i386 (0.2.8+ds-2) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-tk:i386 (3.12.6-1) ... Setting up python3-click (8.1.7-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pil.imagetk:i386 (10.4.0-1) ... Setting up python3-pydantic (2.9.2-2) ... Setting up python3-dev (3.12.6-1) ... Setting up python3-ruamel.yaml (0.18.6+ds-3) ... Setting up python3-pytest-mock (3.14.0-2) ... Setting up python3-referencing (0.35.1-1) ... Setting up python3-optlang (1.8.2-2) ... /usr/lib/python3/dist-packages/optlang/matrix_interface.py:60: SyntaxWarning: invalid escape sequence '\m' """A representation of the convex optimizatgion problem in standard form. /usr/lib/python3/dist-packages/optlang/tests/data/parse_the_final_netlib_results.py:34: SyntaxWarning: invalid escape sequence '\*' OBJ_REGEX = re.compile('\* Objvalue : -?\d+/\d+') /usr/lib/python3/dist-packages/optlang/tests/test_cplex_interface.py:222: SyntaxWarning: invalid escape sequence '\s' self.assertRegexpMatches(str(self.model), '\s*Dummy_\d+:\s*y \+ z \+ 2\.333 x - .* = -300') Setting up python3-pytest-benchmark (4.0.0-4) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-depinfo (2.2.0-2) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up python3-contourpy (1.3.0-2) ... Setting up python3-jsonschema-specifications (2023.12.1-2) ... Setting up dh-python (6.20241024) ... Setting up python3-scipy (1.13.1-5) ... Setting up python3-rich (13.7.1-1) ... Setting up python3-pandas-lib:i386 (2.2.3+dfsg-5) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up python3-httpx (0.27.0-1) ... Setting up python3-jsonschema (4.19.2-5) ... Setting up python3-fonttools (4.54.1-4) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.8.3-3) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-cobra-0.29.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cobra_0.29.1-1_source.changes dpkg-buildpackage: info: source package python-cobra dpkg-buildpackage: info: source version 0.29.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-cobra-0.29.1' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -f cobra/solvers/cglpk.c rm -rf .pytest_cache make[1]: Leaving directory '/build/reproducible-path/python-cobra-0.29.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra copying src/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra copying src/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation copying src/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation copying src/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation copying src/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation copying src/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation copying src/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium copying src/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium copying src/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium copying src/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium copying src/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary copying src/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary copying src/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary copying src/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary copying src/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary copying src/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling copying src/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling copying src/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling copying src/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling copying src/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling copying src/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling copying src/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core copying src/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io copying src/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io copying src/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io copying src/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io copying src/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io copying src/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io copying src/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis copying src/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util copying src/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util copying src/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util copying src/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util copying src/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util copying src/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util copying src/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web copying src/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data copying src/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.7+, pytest-8.3.3, pluggy-1.5.0 benchmark: 4.0.0 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000) rootdir: /build/reproducible-path/python-cobra-0.29.1 configfile: tox.ini plugins: anyio-4.4.0, typeguard-4.4.1, benchmark-4.0.0, mock-3.14.0 collected 553 items tests/test_core/test_configuration.py ...... [ 1%] tests/test_core/test_core_reaction.py ..........ss...................... [ 7%] ...................x....... [ 12%] tests/test_core/test_dictlist.py ...................... [ 16%] tests/test_core/test_formula.py ..... [ 16%] tests/test_core/test_gene.py . [ 17%] tests/test_core/test_gpr.py .....................x..x................... [ 25%] .......................... [ 29%] tests/test_core/test_group.py .. [ 30%] tests/test_core/test_metabolite.py ...ss.ss. [ 31%] tests/test_core/test_model.py .......................................... [ 39%] ...........s..s.ss. [ 42%] tests/test_core/test_solution.py .ss [ 43%] tests/test_flux_analysis/test_deletion.py ....s..... [ 45%] tests/test_flux_analysis/test_fastcc.py .... [ 45%] tests/test_flux_analysis/test_geometric.py .. [ 46%] tests/test_flux_analysis/test_moma.py . [ 46%] tests/test_flux_analysis/test_parsimonious.py .. [ 46%] tests/test_flux_analysis/test_reaction.py . [ 47%] tests/test_flux_analysis/test_room.py .... [ 47%] tests/test_flux_analysis/test_variability.py ....... [ 49%] tests/test_flux_analysis/test_deletion.py sss [ 49%] tests/test_flux_analysis/test_moma.py s [ 49%] tests/test_flux_analysis/test_deletion.py ...... [ 50%] tests/test_flux_analysis/test_gapfilling.py . [ 50%] tests/test_flux_analysis/test_helpers.py ... [ 51%] tests/test_flux_analysis/test_loopless.py ..... [ 52%] tests/test_flux_analysis/test_phenotype_phase_plane.py ...... [ 53%] tests/test_flux_analysis/test_variability.py ....... [ 54%] tests/test_io/test_annotation.py .. [ 55%] tests/test_io/test_annotation_format.py .. [ 55%] tests/test_io/test_io_order.py ........................... [ 60%] tests/test_io/test_json.py .... [ 61%] tests/test_io/test_mat.py .......ssss.... [ 63%] tests/test_io/test_notes.py . [ 64%] tests/test_io/test_pickle.py .. [ 64%] tests/test_io/test_sbml.py .ssss............xxxx.x.x..s............. [ 71%] tests/test_io/test_web/test_load.py ..ssss. [ 73%] tests/test_io/test_yaml.py .x [ 73%] tests/test_manipulation/test_annotate.py . [ 73%] tests/test_manipulation/test_delete.py ....... [ 74%] tests/test_manipulation/test_modify.py ... [ 75%] tests/test_manipulation/test_validate.py .. [ 75%] tests/test_medium/test_boundary_types.py ........... [ 77%] tests/test_medium/test_minimal_medium.py .......... [ 79%] tests/test_sampling/test_achr.py ...... [ 80%] tests/test_sampling/test_optgp.py ...... [ 81%] tests/test_sampling/test_sampling.py .......... [ 83%] tests/test_summary/test_metabolite_summary.py ................. [ 86%] tests/test_summary/test_model_summary.py ............... [ 89%] tests/test_summary/test_reaction_summary.py .................... [ 92%] tests/test_util/test_array.py .. [ 93%] tests/test_util/test_context.py ... [ 93%] tests/test_util/test_process_pool.py ............... [ 96%] tests/test_util/test_solver.py ..............s [ 99%] tests/test_util/test_util.py ...x [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_and_gpr[a AND b-2-gpr_genes2-a and b] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_and_b_strs] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a AND b'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_or_gpr[a OR b-2-gpr_genes2-a or b] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_as_symbolic_boolean[a OR b-symbolic_gpr2] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_or_b_strs] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_from_symbolic[a OR b-symbolic_gpr5] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a OR b'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_complicated_gpr[(a OR b) AND c] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_as_symbolic_boolean[(a OR b) AND c-symbolic_gpr6] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_or_and_strs] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists8] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists9] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_from_symbolic[(a OR b) AND c-symbolic_gpr9] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule '(a OR b) AND c'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_that_needs_two_replacements /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule '(591001.3.peg.1891 AND 591001.3.peg.1892 AND 591001.3.peg.1893)'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_and_b_strs] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists3] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'b AND a'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_or_b_strs] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists0] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists6] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'b OR a'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_or_strs] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists1] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists4] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists7] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists8] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a OR b or c'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_equality_with_bolean_logic[a_b_c_and_strs] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists2] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists5] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists7] .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_gpr.py::test_gpr_inequality_boolean[gpr_lists9] /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py:358: SyntaxWarning: Uppercase AND/OR found in rule 'a AND b and c'. warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_model.py::test_reaction_delete .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_model.py::test_reaction_delete /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/reaction.py:879: DeprecationWarning: delete is deprecated. Use reaction.remove_from_model instead warn( .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_model.py::test_group_loss_of_elements .pybuild/cpython3_3.12_cobra/build/tests/test_flux_analysis/test_gapfilling.py::test_gapfilling /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/group.py:147: UserWarning: need to pass in a list warn("need to pass in a list") .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_model.py::test_change_objective .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_model.py::test_change_objective .pybuild/cpython3_3.12_cobra/build/tests/test_core/test_model.py::test_change_objective /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/reaction.py:761: DeprecationWarning: Please use reaction.flux instead. warn("Please use reaction.flux instead.", DeprecationWarning) .pybuild/cpython3_3.12_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion .pybuild/cpython3_3.12_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/tests/test_flux_analysis/test_deletion.py:437: FutureWarning: Calling float on a single element Series is deprecated and will raise a TypeError in the future. Use float(ser.iloc[0]) instead assert math.isnan(sol.growth) .pybuild/cpython3_3.12_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion .pybuild/cpython3_3.12_cobra/build/tests/test_flux_analysis/test_deletion.py::test_double_reaction_deletion /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/tests/test_flux_analysis/test_deletion.py:438: FutureWarning: Calling float on a single element Series is deprecated and will raise a TypeError in the future. Use float(ser.iloc[0]) instead assert math.isnan(sol_one.growth) .pybuild/cpython3_3.12_cobra/build/tests/test_io/test_json.py: 1 warning .pybuild/cpython3_3.12_cobra/build/tests/test_io/test_mat.py: 3 warnings .pybuild/cpython3_3.12_cobra/build/tests/test_io/test_pickle.py: 1 warning .pybuild/cpython3_3.12_cobra/build/tests/test_io/test_sbml.py: 9 warnings .pybuild/cpython3_3.12_cobra/build/tests/test_io/test_yaml.py: 1 warning /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/solver.py:554: UserWarning: Solver status is 'infeasible'. warn(f"Solver status is '{status}'.", UserWarning) .pybuild/cpython3_3.12_cobra/build/tests/test_io/test_yaml.py::test_save_yaml_model /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/tests/test_io/test_yaml.py:29: PendingDeprecationWarning: you should no longer specify 'unsafe'. For **dumping only** use yaml=YAML(typ='full') yaml = YAML(typ="unsafe") .pybuild/cpython3_3.12_cobra/build/tests/test_medium/test_boundary_types.py::test_find_external_compartment_multi .pybuild/cpython3_3.12_cobra/build/tests/test_medium/test_boundary_types.py::test_find_external_compartment_multi .pybuild/cpython3_3.12_cobra/build/tests/test_medium/test_boundary_types.py::test_find_external_compartment_multi /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/boundary_types.py:74: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` compartment = most[matches[most]][0] .pybuild/cpython3_3.12_cobra/build/tests/test_util/test_process_pool.py::test_with_context /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/process_pool.py:71: PytestMockWarning: Mocks returned by pytest-mock do not need to be used as context managers. The mocker fixture automatically undoes mocking at the end of a test. This warning can be ignored if it was triggered by mocking a context manager. https://pytest-mock.readthedocs.io/en/latest/remarks.html#usage-as-context-manager self._pool.__enter__() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ------------------------------------------------------------------------------------------------------------------------ benchmark: 31 tests ------------------------------------------------------------------------------------------------------------------------ Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- test_subtract_metabolite_benchmark[glpk] 11.5638 (1.0) 1,907.5549 (3.67) 18.0216 (1.03) 43.8577 (3.28) 16.3401 (1.00) 2.6855 (1.12) 8;32 55,488.8872 (0.97) 1882 1 test_subtract_metabolite_benchmark[cplex] 11.9079 (1.03) 1,606.4821 (3.09) 17.8673 (1.02) 37.1476 (2.78) 16.3126 (1.0) 2.4014 (1.0) 11;32 55,968.2351 (0.98) 1858 1 test_subtract_metabolite_benchmark[gurobi] 11.9610 (1.03) 519.2421 (1.0) 17.4481 (1.0) 13.3573 (1.0) 16.6646 (1.02) 2.6019 (1.08) 9;24 57,312.9626 (1.0) 1555 1 test_change_objective_benchmark[optlang-glpk] 620.8173 (53.69) 3,006.9109 (5.79) 804.0156 (46.08) 95.7250 (7.17) 794.2319 (48.69) 105.0399 (43.74) 167;13 1,243.7570 (0.02) 1617 1 test_achr_sample_benchmark 622.3349 (53.82) 9,242.3740 (17.80) 1,388.7193 (79.59) 2,333.6183 (174.71) 718.5000 (44.05) 91.0345 (37.91) 2;2 720.0879 (0.01) 25 1 test_optgp_sample_benchmark 857.2866 (74.14) 17,646.0021 (33.98) 2,061.5719 (118.15) 2,224.6646 (166.55) 1,116.8458 (68.47) 274.5815 (114.34) 93;139 485.0668 (0.01) 681 1 test_loopless_benchmark_after 2,867.4831 (247.97) 3,830.7281 (7.38) 3,410.0166 (195.44) 240.2347 (17.99) 3,495.8550 (214.30) 231.9259 (96.58) 35;11 293.2537 (0.01) 116 1 test_loopless_benchmark_before 16,647.2299 (>1000.0) 19,733.0131 (38.00) 18,982.9665 (>1000.0) 978.9162 (73.29) 19,368.5242 (>1000.0) 371.9099 (154.87) 4;4 52.6788 (0.00) 25 1 test_minimal_medium_mip_benchmark 17,267.7971 (>1000.0) 21,301.4060 (41.02) 18,959.5968 (>1000.0) 1,304.0082 (97.62) 19,693.4401 (>1000.0) 2,457.4683 (>1000.0) 11;0 52.7437 (0.00) 30 1 test_minimal_medium_linear_benchmark 20,077.9657 (>1000.0) 21,133.2133 (40.70) 20,489.0540 (>1000.0) 264.1214 (19.77) 20,484.7478 (>1000.0) 364.6314 (151.84) 7;0 48.8065 (0.00) 26 1 test_copy_benchmark[optlang-glpk] 50,389.8053 (>1000.0) 62,047.9584 (119.50) 56,148.5321 (>1000.0) 2,595.5638 (194.32) 56,075.9250 (>1000.0) 3,655.2500 (>1000.0) 4;0 17.8099 (0.00) 19 1 test_gpr_equality_benchmark 77,612.7991 (>1000.0) 86,609.3310 (166.80) 82,159.3844 (>1000.0) 2,586.2804 (193.62) 81,687.4160 (>1000.0) 3,308.0871 (>1000.0) 4;0 12.1715 (0.00) 11 1 test_single_reaction_deletion_benchmark[glpk] 78,643.2037 (>1000.0) 84,589.4883 (162.91) 80,418.7144 (>1000.0) 1,653.5921 (123.80) 80,072.1487 (>1000.0) 1,829.6973 (761.92) 2;1 12.4349 (0.00) 12 1 test_deepcopy_benchmark 80,964.6007 (>1000.0) 98,340.2040 (189.39) 84,851.4597 (>1000.0) 4,983.4384 (373.09) 83,645.5682 (>1000.0) 4,258.0485 (>1000.0) 1;1 11.7853 (0.00) 11 1 test_fastcc_benchmark[glpk] 213,530.3956 (>1000.0) 221,789.9850 (427.14) 217,056.9346 (>1000.0) 3,748.1170 (280.60) 215,644.1957 (>1000.0) 6,729.1722 (>1000.0) 1;0 4.6071 (0.00) 5 1 test_add_metabolite_benchmark[gurobi] 266,499.8397 (>1000.0) 282,614.1450 (544.28) 273,451.0359 (>1000.0) 5,911.7966 (442.59) 272,344.5483 (>1000.0) 6,556.5017 (>1000.0) 2;0 3.6570 (0.00) 5 1 test_achr_init_benchmark 275,429.2497 (>1000.0) 298,967.1850 (575.78) 286,941.3112 (>1000.0) 9,437.9642 (706.58) 285,672.1701 (>1000.0) 15,207.1676 (>1000.0) 2;0 3.4850 (0.00) 5 1 test_add_metabolite_benchmark[cplex] 279,727.3183 (>1000.0) 299,893.9133 (577.56) 289,456.1171 (>1000.0) 7,597.0084 (568.75) 288,044.9379 (>1000.0) 10,347.3963 (>1000.0) 2;0 3.4548 (0.00) 5 1 test_add_metabolite_benchmark[glpk] 283,780.7918 (>1000.0) 297,398.5560 (572.76) 289,001.8704 (>1000.0) 5,253.2805 (393.29) 286,990.5680 (>1000.0) 6,385.7628 (>1000.0) 1;0 3.4602 (0.00) 5 1 test_single_gene_deletion_fba_benchmark[glpk] 356,728.8178 (>1000.0) 408,685.7503 (787.08) 380,462.9222 (>1000.0) 20,661.8756 (>1000.0) 378,288.4753 (>1000.0) 32,558.6437 (>1000.0) 2;0 2.6284 (0.00) 5 1 test_flux_variability_loopless_benchmark[glpk] 433,262.7743 (>1000.0) 591,088.5232 (>1000.0) 510,925.6825 (>1000.0) 62,255.2907 (>1000.0) 531,963.6590 (>1000.0) 90,606.9158 (>1000.0) 2;0 1.9572 (0.00) 5 1 test_gpr_symbolism_benchmark 526,310.3563 (>1000.0) 559,111.0680 (>1000.0) 546,676.4029 (>1000.0) 13,410.5106 (>1000.0) 547,193.5072 (>1000.0) 19,925.9802 (>1000.0) 1;0 1.8292 (0.00) 5 1 test_optgp_init_benchmark 625,892.4487 (>1000.0) 848,892.1272 (>1000.0) 681,178.8799 (>1000.0) 94,548.8168 (>1000.0) 637,324.7351 (>1000.0) 74,099.6666 (>1000.0) 1;1 1.4680 (0.00) 5 1 test_double_gene_deletion_benchmark 655,005.1360 (>1000.0) 740,292.5240 (>1000.0) 702,259.8752 (>1000.0) 31,087.8711 (>1000.0) 703,523.7411 (>1000.0) 34,444.3248 (>1000.0) 2;0 1.4240 (0.00) 5 1 test_single_gene_deletion_linear_moma_benchmark[glpk] 719,142.3750 (>1000.0) 748,991.9779 (>1000.0) 735,613.4340 (>1000.0) 11,050.5027 (827.30) 736,268.1082 (>1000.0) 13,716.9772 (>1000.0) 2;0 1.3594 (0.00) 5 1 test_pfba_benchmark[glpk] 870,394.4851 (>1000.0) 1,210,404.1544 (>1000.0) 950,702.9146 (>1000.0) 145,684.6602 (>1000.0) 887,842.4647 (>1000.0) 102,123.8320 (>1000.0) 1;1 1.0519 (0.00) 5 1 test_flux_variability_benchmark[glpk] 925,796.6271 (>1000.0) 1,205,470.9750 (>1000.0) 1,074,110.4230 (>1000.0) 100,537.1436 (>1000.0) 1,087,979.0941 (>1000.0) 103,142.7402 (>1000.0) 2;0 0.9310 (0.00) 5 1 test_single_gene_deletion_linear_room_benchmark[glpk] 1,059,955.2421 (>1000.0) 1,864,380.2530 (>1000.0) 1,224,422.6936 (>1000.0) 357,781.5043 (>1000.0) 1,064,999.6670 (>1000.0) 209,999.2184 (>1000.0) 1;1 0.8167 (0.00) 5 1 test_copy_benchmark_large_model[optlang-glpk] 1,195,157.1796 (>1000.0) 1,771,456.4689 (>1000.0) 1,441,981.4734 (>1000.0) 297,385.3577 (>1000.0) 1,275,503.2317 (>1000.0) 559,018.9443 (>1000.0) 2;0 0.6935 (0.00) 5 1 test_geometric_fba_benchmark[glpk] 1,446,478.0604 (>1000.0) 1,671,022.7113 (>1000.0) 1,507,387.9176 (>1000.0) 92,912.1409 (>1000.0) 1,471,564.0238 (>1000.0) 80,394.4868 (>1000.0) 1;1 0.6634 (0.00) 5 1 test_double_reaction_deletion_benchmark 1,861,590.2397 (>1000.0) 2,132,668.4379 (>1000.0) 1,972,985.3927 (>1000.0) 121,042.4010 (>1000.0) 1,920,377.7872 (>1000.0) 209,757.8658 (>1000.0) 1;0 0.5068 (0.00) 5 1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Legend: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile. OPS: Operations Per Second, computed as 1 / Mean ===== 511 passed, 31 skipped, 11 xfailed, 74 warnings in 327.64s (0:05:27) ===== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12 creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/validate.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/modify.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/delete.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/medium/__pycache__/annotations.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__pycache__ creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__pycache__/summary.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__pycache__/model_summary.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/optgp.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/achr.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/core.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/sampling/__pycache__/sampling.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__pycache__ creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/__pycache__/exceptions.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/__pycache__ creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/group.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/dictlist.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/model.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/solution.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/gene.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/metabolite.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/object.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/species.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/configuration.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/reaction.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/formula.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/__pycache__/singleton.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/cobrapy_repository.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/load.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/json.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/yaml.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/dict.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/mat.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/__pycache__/sbml.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/reaction.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/context.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/util.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/array.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/solver.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/__pycache__/process_pool.cpython-312.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.12_cobra/build/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/.benchmarks byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/validate.py to validate.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/modify.py to modify.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/manipulation/delete.py to delete.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/annotations.py to annotations.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/data/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/summary.py to summary.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/summary/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/exceptions.py to exceptions.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/achr.py to achr.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/sampling.py to sampling.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/core.py to core.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/sampling/optgp.py to optgp.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/metabolite.py to metabolite.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/solution.py to solution.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/singleton.py to singleton.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/object.py to object.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/dictlist.py to dictlist.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/formula.py to formula.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/species.py to species.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/group.py to group.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/configuration.py to configuration.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/reaction.py to reaction.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/model.py to model.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/core/gene.py to gene.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/cobrapy_repository.py to cobrapy_repository.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/load.py to load.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/mat.py to mat.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/yaml.py to yaml.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/json.py to json.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/dict.py to dict.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/io/sbml.py to sbml.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/room.py to room.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/process_pool.py to process_pool.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/solver.py to solver.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/array.py to array.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/context.py to context.cpython-312.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra/util/util.py to util.cpython-312.pyc running install_egg_info running egg_info creating src/cobra.egg-info writing src/cobra.egg-info/PKG-INFO writing dependency_links to src/cobra.egg-info/dependency_links.txt writing requirements to src/cobra.egg-info/requires.txt writing top-level names to src/cobra.egg-info/top_level.txt writing manifest file 'src/cobra.egg-info/SOURCES.txt' reading manifest file 'src/cobra.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'src/cobra.egg-info/SOURCES.txt' Copying src/cobra.egg-info to /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.12/dist-packages/cobra-0.29.1.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/python-cobra-0.29.1' dh_install -X update_pickles.py --package=python-cobra-data dh_install --remaining-packages find debian -name __pycache__ | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/python-cobra-0.29.1' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:316: Cannot find package that provides python_libsbml. Please add package that provides it to Build-Depends or add "python_libsbml python3-libsbml" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.29.1-1_i386.deb'. dpkg-deb: building package 'python-cobra-data' in '../python-cobra-data_0.29.1-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-cobra_0.29.1-1_i386.buildinfo dpkg-genchanges --build=binary -O../python-cobra_0.29.1-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/25245 and its subdirectories I: Current time: Fri Nov 8 10:18:29 -12 2024 I: pbuilder-time-stamp: 1731104309 Fri Nov 8 22:18:33 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Fri Nov 8 22:18:33 UTC 2024 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Fri Nov 8 22:21:59 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. Fri Nov 8 22:21:59 UTC 2024 I: python-cobra_0.29.1-1_i386.changes: Format: 1.8 Date: Sun, 22 Sep 2024 14:54:56 +0200 Source: python-cobra Binary: python-cobra-data python3-cobra Architecture: all i386 Version: 0.29.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-based modeling of biological networks with Python 3 Closes: 1067989 Changes: python-cobra (0.29.1-1) unstable; urgency=medium . * Team upload. * New upstream version 0.29.1 * Add a patch to replace appdirs with platformdirs (Closes: #1067989) Checksums-Sha1: 8f371718329e41e49c4b2c249c9ad5dcf0ebbaeb 1436992 python-cobra-data_0.29.1-1_all.deb a89e1aa8d5f5a5a2c49f48d772b9089cf1257633 11290 python-cobra_0.29.1-1_i386.buildinfo e46ff1fc05e9c47406c4e9f2ca1226f914258d39 1119244 python3-cobra_0.29.1-1_i386.deb Checksums-Sha256: ce2b19fef8a9e804ceaf9bdf64085fb589fde5b610eed8113212d29c20ac447a 1436992 python-cobra-data_0.29.1-1_all.deb 98f1131746afa1982950d0d1d24fc54b123429e4496df78bf57f76315b7bf165 11290 python-cobra_0.29.1-1_i386.buildinfo f4157966c713d531eebdd7f9e250cf623e20a6da2cb5adfb2ac459d457e5b564 1119244 python3-cobra_0.29.1-1_i386.deb Files: 8007c5a8dccaf1d14c00c56aeaf4feb0 1436992 python optional python-cobra-data_0.29.1-1_all.deb a1d91f3e2653ced0083fd7987168add2 11290 python optional python-cobra_0.29.1-1_i386.buildinfo e461e967a832fb340449a05e14b57f27 1119244 python optional python3-cobra_0.29.1-1_i386.deb Fri Nov 8 22:22:01 UTC 2024 I: diffoscope 282 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_12-27526.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.KJc2GHLf/python-cobra_0.29.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.KJc2GHLf/python-cobra_0.29.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.KJc2GHLf/python-cobra_0.29.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.KJc2GHLf/b1/python-cobra_0.29.1-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.KJc2GHLf/b2/python-cobra_0.29.1-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.418s) 0.418s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.045s) 0.045s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 761ms CPU time consumed: 763ms Fri Nov 8 22:22:02 UTC 2024 I: diffoscope 282 found no differences in the changes files, and a .buildinfo file also exists. Fri Nov 8 22:22:02 UTC 2024 I: python-cobra from trixie built successfully and reproducibly on i386. Fri Nov 8 22:22:03 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Nov 8 22:22:03 UTC 2024 I: Submitting 12K b1/python-cobra_0.29.1-1_i386.buildinfo.asc Fri Nov 8 22:22:04 UTC 2024 I: Submitting 12K b2/python-cobra_0.29.1-1_i386.buildinfo.asc Fri Nov 8 22:22:05 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Nov 8 22:22:05 UTC 2024 I: Done submitting .buildinfo files. Fri Nov 8 22:22:05 UTC 2024 I: Removing signed python-cobra_0.29.1-1_i386.buildinfo.asc files: removed './b1/python-cobra_0.29.1-1_i386.buildinfo.asc' removed './b2/python-cobra_0.29.1-1_i386.buildinfo.asc'