Tue May 14 13:47:42 UTC 2024 I: starting to build pynn/trixie/i386 on jenkins on '2024-05-14 13:47' Tue May 14 13:47:42 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_11/12105/console.log Tue May 14 13:47:42 UTC 2024 I: Downloading source for trixie/pynn=0.10.1-3 --2024-05-14 13:47:42-- http://deb.debian.org/debian/pool/main/p/pynn/pynn_0.10.1-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2409 (2.4K) [text/prs.lines.tag] Saving to: ‘pynn_0.10.1-3.dsc’ 0K .. 100% 352M=0s 2024-05-14 13:47:42 (352 MB/s) - ‘pynn_0.10.1-3.dsc’ saved [2409/2409] Tue May 14 13:47:42 UTC 2024 I: pynn_0.10.1-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pynn Binary: python3-pynn Architecture: all Version: 0.10.1-3 Maintainer: Debian Med Packaging Team Uploaders: Yaroslav Halchenko , Michael Hanke , Étienne Mollier Homepage: https://neuralensemble.org/trac/PyNN Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/pynn Vcs-Git: https://salsa.debian.org/med-team/pynn.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-numpy, python3-nose , python3-mock , python3-cheetah , python3-jinja2 , python3-neuron , python3-quantities , python3-lazyarray , python3-neo Package-List: python3-pynn deb python optional arch=all Checksums-Sha1: 6873d5bffe726f7b201bedd040a459b49b506929 3176116 pynn_0.10.1.orig.tar.gz d260943b5984fe82ff69735f6b05e06e36836282 11792 pynn_0.10.1-3.debian.tar.xz Checksums-Sha256: b11817579915acd7b905f49a37369d0f203f1870267f51d8caa6d78ac35cd5c2 3176116 pynn_0.10.1.orig.tar.gz 73e804ad8a7491b444b409133c13029cafffe795444e28683d1cf0924cf933b0 11792 pynn_0.10.1-3.debian.tar.xz Files: 58281a84331462badcc46f7eaef1d0e7 3176116 pynn_0.10.1.orig.tar.gz b0fca419531828617059e356a286cf8d 11792 pynn_0.10.1-3.debian.tar.xz Dgit: 087c7c2b95672a27257aa38afb4c1834f8426f3a debian archive/debian/0.10.1-3 https://git.dgit.debian.org/pynn -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmV8KXkUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpxnQ//S2I/obcJY0t2p74d2SzI/uQUErOa hLWMz/apOk1lHLAmokLpM9XvzIJvAf063wVOSioQ0DPcEnWmhYvtGbFO6WpBlNgn faz/UD84Yel6V3FQceYGQNp1ik6fnPx7KTCFDx1uTxWnWUi3dZiIXogNh8KkYKaU t8vWrboqXi7RGOXFy0QMNDY9bt0plGDjhr2VKZFHCF37oYTzGiVjeGzhftiMlQnO +kGM87TN/AHidaTdorY5gnN4lNmKKuhV04PU5iKxchb3edSHnl7lROuvROAeRA6l 2GAXxMm0g+/G2b1xTwP4VnaUI/CjMlvf7BQeeIymG9voWKW0ZpsX//vQRaGlrKjH 8vj7ijPRst5UeWft22lP9RF3ru0G6dg7V5yW9w5UPwsWjF8HMF6CeqAUDQ2pZHYV DlhTfx2avo7MaC1esFMC0bQ43dxsgO0w2nTZUCSqCGebC21SMQsJfEHQg7Nl4dvs 2geQMIdiJdpb9U1nA1ZPPdTJsi2UU8JVBq6/YYULYBx+ELLOVCPTO4wT8ur4WYMM scuetCg+lgiBd2xzjkzcrt1v2O3vvcDE6p9SgdSMH6lzEYKd5XUkie++UYfRd+Df DsdDvp3v8rl4bdVd6fgxikCNDlBxEs4xHz3IWO6n/G7llHlBpwfmfND6uD1RDNhu hSpU694a39MjhIw= =FUzx -----END PGP SIGNATURE----- Tue May 14 13:47:42 UTC 2024 I: Checking whether the package is not for us Tue May 14 13:47:42 UTC 2024 I: Starting 1st build on remote node ionos6-i386.debian.net. Tue May 14 13:47:42 UTC 2024 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Tue May 14 13:48:45 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jun 16 08:10:46 -12 2025 I: pbuilder-time-stamp: 1750104646 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [pynn_0.10.1-3.dsc] I: copying [./pynn_0.10.1.orig.tar.gz] I: copying [./pynn_0.10.1-3.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Dec 15 10:24:57 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pynn_0.10.1-3.dsc: no acceptable signature found dpkg-source: info: extracting pynn in pynn-0.10.1 dpkg-source: info: unpacking pynn_0.10.1.orig.tar.gz dpkg-source: info: unpacking pynn_0.10.1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying numpy1.24.patch dpkg-source: info: applying python3.12.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/117912/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='c93d59e8d3934f548d6dca68ac60204c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='117912' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NhQSVlQa/pbuilderrc_CwaO --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NhQSVlQa/b1 --logfile b1/build.log pynn_0.10.1-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 16 17:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/117912/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-numpy, python3-nose, python3-mock, python3-cheetah, python3-jinja2, python3-neuron, python3-quantities, python3-lazyarray, python3-neo dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19684 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-nose; however: Package python3-nose is not installed. pbuilder-satisfydepends-dummy depends on python3-mock; however: Package python3-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-cheetah; however: Package python3-cheetah is not installed. pbuilder-satisfydepends-dummy depends on python3-jinja2; however: Package python3-jinja2 is not installed. pbuilder-satisfydepends-dummy depends on python3-neuron; however: Package python3-neuron is not installed. pbuilder-satisfydepends-dummy depends on python3-quantities; however: Package python3-quantities is not installed. pbuilder-satisfydepends-dummy depends on python3-lazyarray; however: Package python3-lazyarray is not installed. pbuilder-satisfydepends-dummy depends on python3-neo; however: Package python3-neo is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libevent-core-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libfabric1{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-hl-100t64{a} libhwloc-plugins{a} libhwloc15{a} libibverbs1{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnl-3-200{a} libnl-route-3-200{a} libopenjp2-7{a} libopenmpi3t64{a} libpciaccess0{a} libpipeline1{a} libpng16-16t64{a} libpsl5t64{a} libpsm-infinipath1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} librdmacm1t64{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libsub-override-perl{a} libsz2{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} m4{a} man-db{a} media-types{a} netbase{a} neuron{a} ocl-icd-libopencl1{a} po-debconf{a} python3{a} python3-all{a} python3-cheetah{a} python3-decorator{a} python3-distutils{a} python3-h5py{a} python3-h5py-serial{a} python3-jinja2{a} python3-lazyarray{a} python3-lib2to3{a} python3-markupsafe{a} python3-minimal{a} python3-mock{a} python3-neo{a} python3-neuron{a} python3-nixio{a} python3-nose{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-quantities{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-zombie-imp{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl ibverbs-providers krb5-locales libarchive-cpio-perl libglib2.0-data libjs-jquery libjs-underscore libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-babel python3-olefile python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 137 newly installed, 0 to remove and 0 not upgraded. Need to get 80.8 MB of archives. After unpacking 349 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.11-minimal i386 3.11.9-1 [817 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.2-1 [107 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 python3.11-minimal i386 3.11.9-1 [1918 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-4 [171 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libpython3.11-stdlib i386 3.11.9-1 [1795 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 python3.11 i386 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.11.8-1 [9336 B] Get: 13 http://deb.debian.org/debian trixie/main i386 python3 i386 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.3-1 [809 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.3-1 [2224 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3 [42.9 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-4 [1194 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40-8 [97.2 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.1-1 [1421 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 38 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-1+b1 [194 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b3 [727 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 python3-distutils all 3.12.3-1 [131 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 68.1.2-2 [468 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20240422 [107 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 libaec0 i386 1.1.3-1 [24.5 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.0-3 [140 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b3 [314 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 libbsd0 i386 0.12.2-1 [134 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.1~rc2-1 [22.8 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.20.1-6+b1 [36.1 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.20.1-6+b1 [83.2 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get: 59 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.20.1-6+b1 [360 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.20.1-6+b1 [145 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-6 [20.5 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-6 [60.6 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.17+dfsg-1 [198 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.61.0-1+b1 [84.0 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.0-4.1+b2 [225 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libcurl4t64 i386 8.7.1-5 [478 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.20-1 [46.9 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libevent-core-2.1-7t64 i386 2.1.12-stable-8.1+b3 [140 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 libevent-pthreads-2.1-7t64 i386 2.1.12-stable-8.1+b3 [54.3 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 libnl-3-200 i386 3.7.0-0.3 [61.8 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libnl-route-3-200 i386 3.7.0-0.3 [193 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 libibverbs1 i386 50.0-2+b1 [66.7 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 libpsm-infinipath1 i386 3.3+20.604758e7-6.3 [177 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 librdmacm1t64 i386 50.0-2+b1 [76.0 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 libfabric1 i386 1.17.0-3+b1 [540 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 libpng16-16t64 i386 1.6.43-5 [286 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 libfreetype6 i386 2.13.2+dfsg-1+b4 [449 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 libfribidi0 i386 1.0.13-3+b1 [71.8 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14-20240330-1 [735 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 libglib2.0-0t64 i386 2.80.2-1 [1555 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 libgraphite2-3 i386 1.3.14-2 [77.7 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 libharfbuzz0b i386 8.3.0-2+b1 [2234 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 libsz2 i386 1.1.3-1 [7824 B] Get: 86 http://deb.debian.org/debian trixie/main i386 libhdf5-103-1t64 i386 1.10.10+repack-3.3 [1178 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 libhdf5-hl-100t64 i386 1.10.10+repack-3.3 [74.4 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 libpciaccess0 i386 0.17-3+b1 [53.8 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 libxau6 i386 1:1.0.9-1+b1 [18.5 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 libxdmcp6 i386 1:1.1.2-3+b1 [24.8 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 libx11-data all 2:1.8.7-1 [328 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 libx11-6 i386 2:1.8.7-1+b1 [822 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 libxnvctrl0 i386 535.171.04-1 [13.7 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 ocl-icd-libopencl1 i386 2.3.2-1+b1 [43.5 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 libhwloc15 i386 2.10.0-1+b1 [175 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 libhwloc-plugins i386 2.10.0-1+b1 [18.4 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 libimagequant0 i386 2.18.0-1+b1 [35.9 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 libjbig0 i386 2.1-6.1+b1 [31.8 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo i386 1:2.1.5-3 [169 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.0-3 [2167 kB] Get: 103 http://deb.debian.org/debian trixie/main i386 liblbfgsb0 i386 3.0+dfsg.4-1+b1 [29.1 kB] Get: 104 http://deb.debian.org/debian trixie/main i386 liblcms2-2 i386 2.14-2+b1 [165 kB] Get: 105 http://deb.debian.org/debian trixie/main i386 liblerc4 i386 4.0.0+ds-4+b1 [180 kB] Get: 106 http://deb.debian.org/debian trixie/main i386 liblzf1 i386 3.6-4+b1 [10.1 kB] Get: 107 http://deb.debian.org/debian trixie/main i386 libopenjp2-7 i386 2.5.0-2+b3 [197 kB] Get: 108 http://deb.debian.org/debian trixie/main i386 libopenmpi3t64 i386 4.1.6-13.3 [2626 kB] Get: 109 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.3-1 [1945 kB] Get: 110 http://deb.debian.org/debian trixie/main i386 libraqm0 i386 0.10.1-1+b1 [14.7 kB] Get: 111 http://deb.debian.org/debian trixie/main i386 libsharpyuv0 i386 1.4.0-0.1 [113 kB] Get: 112 http://deb.debian.org/debian trixie/main i386 libwebp7 i386 1.4.0-0.1 [318 kB] Get: 113 http://deb.debian.org/debian trixie/main i386 libtiff6 i386 4.5.1+git230720-4 [338 kB] Get: 114 http://deb.debian.org/debian trixie/main i386 libwebpdemux2 i386 1.4.0-0.1 [111 kB] Get: 115 http://deb.debian.org/debian trixie/main i386 libwebpmux3 i386 1.4.0-0.1 [125 kB] Get: 116 http://deb.debian.org/debian trixie/main i386 neuron i386 8.2.2-6+b1 [2085 kB] Get: 117 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.3-1 [659 kB] Get: 118 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.11.8-1 [1056 B] Get: 119 http://deb.debian.org/debian trixie/main i386 python3-cheetah i386 3.3.3-1 [138 kB] Get: 120 http://deb.debian.org/debian trixie/main i386 python3-decorator all 5.1.1-5 [15.1 kB] Get: 121 http://deb.debian.org/debian trixie/main i386 python3-numpy i386 1:1.26.4+ds-8 [5469 kB] Get: 122 http://deb.debian.org/debian trixie/main i386 python3-h5py-serial i386 3.10.0-1+b3 [1397 kB] Get: 123 http://deb.debian.org/debian trixie/main i386 python3-h5py all 3.10.0-1 [14.4 kB] Get: 124 http://deb.debian.org/debian trixie/main i386 python3-markupsafe i386 2.1.5-1 [14.4 kB] Get: 125 http://deb.debian.org/debian trixie/main i386 python3-jinja2 all 3.1.3-1 [119 kB] Get: 126 http://deb.debian.org/debian trixie/main i386 python3-scipy i386 1.11.4-6 [19.0 MB] Get: 127 http://deb.debian.org/debian trixie/main i386 python3-lazyarray all 0.5.0-1 [11.3 kB] Get: 128 http://deb.debian.org/debian trixie/main i386 python3-mock all 5.1.0-1 [70.2 kB] Get: 129 http://deb.debian.org/debian trixie/main i386 python3-packaging all 24.0-1 [45.5 kB] Get: 130 http://deb.debian.org/debian trixie/main i386 python3-quantities all 0.15.0-1 [66.5 kB] Get: 131 http://deb.debian.org/debian trixie/main i386 python3-six all 1.16.0-6 [16.3 kB] Get: 132 http://deb.debian.org/debian trixie/main i386 python3-nixio all 1.5.3+dfsg-1 [112 kB] Get: 133 http://deb.debian.org/debian trixie/main i386 python3-pil i386 10.3.0-2 [566 kB] Get: 134 http://deb.debian.org/debian trixie/main i386 python3-neo all 0.13.0-1 [388 kB] Get: 135 http://deb.debian.org/debian trixie/main i386 python3-neuron i386 8.2.2-6+b1 [526 kB] Get: 136 http://deb.debian.org/debian trixie/main i386 python3-zombie-imp all 0.0.2-2 [11.7 kB] Get: 137 http://deb.debian.org/debian trixie/main i386 python3-nose all 1.3.7-12 [130 kB] Fetched 80.8 MB in 1s (62.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19684 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.9-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.2-1_i386.deb ... Unpacking libexpat1:i386 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_i386.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:i386 (3.11.9-1) ... Setting up libexpat1:i386 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20000 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_i386.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../5-libreadline8t64_8.2-4_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:i386. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_i386.deb ... Unpacking libpython3.11-stdlib:i386 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_i386.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20992 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_i386.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:i386. Preparing to unpack .../001-libpython3.12-minimal_3.12.3-1_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../002-python3.12-minimal_3.12.3-1_i386.deb ... Unpacking python3.12-minimal (3.12.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../008-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-4_i386.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40-8_i386.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../011-libpipeline1_1.5.7-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.12.1-1_i386.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../014-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../015-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../016-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../017-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../018-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../019-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../020-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../021-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../022-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../023-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../024-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../025-libelf1t64_0.191-1+b1_i386.deb ... Unpacking libelf1t64:i386 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../026-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../027-libicu72_72.1-4+b1_i386.deb ... Unpacking libicu72:i386 (72.1-4+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../028-libxml2_2.9.14+dfsg-1.3+b3_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../029-gettext_0.21-14+b1_i386.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../030-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../031-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../032-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../033-python3-pkg-resources_68.1.2-2_all.deb ... Unpacking python3-pkg-resources (68.1.2-2) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../034-python3-lib2to3_3.12.3-1_all.deb ... Unpacking python3-lib2to3 (3.12.3-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../035-python3-distutils_3.12.3-1_all.deb ... Unpacking python3-distutils (3.12.3-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../036-python3-setuptools_68.1.2-2_all.deb ... Unpacking python3-setuptools (68.1.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../037-dh-python_6.20240422_all.deb ... Unpacking dh-python (6.20240422) ... Selecting previously unselected package libaec0:i386. Preparing to unpack .../038-libaec0_1.1.3-1_i386.deb ... Unpacking libaec0:i386 (1.1.3-1) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../039-libblas3_3.12.0-3_i386.deb ... Unpacking libblas3:i386 (3.12.0-3) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../040-libbrotli1_1.1.0-2+b3_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b3) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../041-libbsd0_0.12.2-1_i386.deb ... Unpacking libbsd0:i386 (0.12.2-1) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../042-libcom-err2_1.47.1~rc2-1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1~rc2-1) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../043-libkrb5support0_1.20.1-6+b1_i386.deb ... Unpacking libkrb5support0:i386 (1.20.1-6+b1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../044-libk5crypto3_1.20.1-6+b1_i386.deb ... Unpacking libk5crypto3:i386 (1.20.1-6+b1) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../045-libkeyutils1_1.6.3-3_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../046-libkrb5-3_1.20.1-6+b1_i386.deb ... Unpacking libkrb5-3:i386 (1.20.1-6+b1) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../047-libgssapi-krb5-2_1.20.1-6+b1_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.20.1-6+b1) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../048-libsasl2-modules-db_2.1.28+dfsg1-6_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-6) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../049-libsasl2-2_2.1.28+dfsg1-6_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg1-6) ... 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Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up liblzf1:i386 (3.6-4+b1) ... Setting up libfribidi0:i386 (1.0.13-3+b1) ... Setting up libimagequant0:i386 (2.18.0-1+b1) ... Setting up libpng16-16t64:i386 (1.6.43-5) ... Setting up libhwloc15:i386 (2.10.0-1+b1) ... Setting up autopoint (0.21-14) ... Setting up libk5crypto3:i386 (1.20.1-6+b1) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-6) ... Setting up libgfortran5:i386 (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:i386 (1.4.0-0.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up ocl-icd-libopencl1:i386 (2.3.2-1+b1) ... Setting up libtiff6:i386 (4.5.1+git230720-4) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up libnl-3-200:i386 (3.7.0-0.3) ... Setting up libopenjp2-7:i386 (2.5.0-2+b3) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up libkrb5-3:i386 (1.20.1-6+b1) ... Setting up libevent-core-2.1-7t64:i386 (2.1.12-stable-8.1+b3) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/i386-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libssh2-1t64:i386 (1.11.0-4.1+b2) ... Setting up libwebpmux3:i386 (1.4.0-0.1) ... Setting up libbsd0:i386 (0.12.2-1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b3) ... Setting up libsz2:i386 (1.1.3-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.3-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3+b1) ... Setting up liblapack3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libxcb1:i386 (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libevent-pthreads-2.1-7t64:i386 (2.1.12-stable-8.1+b3) ... Setting up libwebpdemux2:i386 (1.4.0-0.1) ... Setting up libldap-2.5-0:i386 (2.5.17+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnl-route-3-200:i386 (3.7.0-0.3) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:i386 (2.13.2+dfsg-1+b4) ... Setting up libgssapi-krb5-2:i386 (1.20.1-6+b1) ... Setting up libreadline8t64:i386 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up libx11-6:i386 (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:i386 (8.3.0-2+b1) ... Setting up liblbfgsb0:i386 (3.0+dfsg.4-1+b1) ... Setting up libibverbs1:i386 (50.0-2+b1) ... Setting up libpython3.12-stdlib:i386 (3.12.3-1) ... Setting up libcurl4t64:i386 (8.7.1-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:i386 (3.11.9-1) ... Setting up python3.12 (3.12.3-1) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxnvctrl0:i386 (535.171.04-1) ... Setting up libraqm0:i386 (0.10.1-1+b1) ... Setting up librdmacm1t64:i386 (50.0-2+b1) ... Setting up libhdf5-103-1t64:i386 (1.10.10+repack-3.3) ... Setting up libpython3-stdlib:i386 (3.11.8-1) ... Setting up libfabric1:i386 (1.17.0-3+b1) ... Setting up libhdf5-hl-100t64:i386 (1.10.10+repack-3.3) ... Setting up python3.11 (3.11.9-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up libhwloc-plugins:i386 (2.10.0-1+b1) ... Setting up python3-markupsafe (2.1.5-1) ... Setting up python3-mock (5.1.0-1) ... Setting up python3-six (1.16.0-6) ... Setting up python3-pil:i386 (10.3.0-2) ... Setting up python3-cheetah (3.3.3-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.0-1) ... Setting up libopenmpi3t64:i386 (4.1.6-13.3) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... python3.12: can't get files for byte-compilation Setting up python3-zombie-imp (0.0.2-2) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-all (3.11.8-1) ... Setting up python3-nose (1.3.7-12) ... /usr/lib/python3/dist-packages/nose/config.py:142: SyntaxWarning: invalid escape sequence '\.' """nose configuration. /usr/lib/python3/dist-packages/nose/ext/dtcompat.py:686: SyntaxWarning: invalid escape sequence '\S' _INDENT_RE = re.compile('^([ ]*)(?=\S)', re.MULTILINE) /usr/lib/python3/dist-packages/nose/ext/dtcompat.py:1021: SyntaxWarning: invalid escape sequence '\s' pat = re.compile('(^|.*:)\s*\w*("|\')') /usr/lib/python3/dist-packages/nose/ext/dtcompat.py:1430: SyntaxWarning: invalid escape sequence '\s' want = re.sub('(?m)^%s\s*?$' % re.escape(BLANKLINE_MARKER), /usr/lib/python3/dist-packages/nose/ext/dtcompat.py:1434: SyntaxWarning: invalid escape sequence '\s' got = re.sub('(?m)^\s*?$', '', got) /usr/lib/python3/dist-packages/nose/inspector.py:110: SyntaxWarning: invalid escape sequence '\ ' """Find lines in home that are inspectable. Setting up neuron (8.2.2-6+b1) ... Setting up python3-numpy (1:1.26.4+ds-8) ... Setting up python3-quantities (0.15.0-1) ... Setting up dh-python (6.20240422) ... Setting up python3-scipy (1.11.4-6) ... Setting up python3-h5py-serial (3.10.0-1+b3) ... Setting up python3-neuron (8.2.2-6+b1) ... /usr/lib/python3/dist-packages/neuron/rxd/species.py:195: SyntaxWarning: invalid escape sequence '\[' "^\[[a-zA-Z][a-zA-Z0-9_]*:[a-zA-Z0-9_]*\]|[a-zA-Z][a-zA-Z0-9_]*:[a-zA-Z0-9_]*$" Setting up python3-h5py (3.10.0-1) ... Setting up python3-lazyarray (0.5.0-1) ... Setting up python3-nixio (1.5.3+dfsg-1) ... Setting up python3-neo (0.13.0-1) ... Processing triggers for libc-bin (2.38-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pynn-0.10.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pynn_0.10.1-3_source.changes dpkg-buildpackage: info: source package pynn dpkg-buildpackage: info: source version 0.10.1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config I: pybuild base:311: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build running build running build_py creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN copying pyNN/connectors.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN copying pyNN/parameters.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN copying pyNN/core.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN copying pyNN/multisim.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN copying pyNN/random.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN copying pyNN/space.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN copying pyNN/network.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN copying pyNN/models.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN copying pyNN/errors.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN copying pyNN/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest copying pyNN/nest/connectors.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest copying pyNN/nest/simulator.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest copying pyNN/nest/nineml.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest copying pyNN/nest/random.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest copying pyNN/nest/recording.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest copying pyNN/nest/cells.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest copying pyNN/nest/populations.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest copying pyNN/nest/electrodes.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest copying pyNN/nest/projections.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest copying pyNN/nest/conversion.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest copying pyNN/nest/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest copying pyNN/nest/synapses.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron copying pyNN/neuron/connectors.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron copying pyNN/neuron/simulator.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron copying pyNN/neuron/nineml.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron copying pyNN/neuron/random.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron copying pyNN/neuron/recording.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron copying pyNN/neuron/cells.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron copying pyNN/neuron/populations.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron copying pyNN/neuron/projections.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron copying pyNN/neuron/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/brian2 copying pyNN/brian2/simulator.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/brian2 copying pyNN/brian2/recording.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/brian2 copying pyNN/brian2/cells.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/brian2 copying pyNN/brian2/populations.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/brian2 copying pyNN/brian2/projections.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/brian2 copying pyNN/brian2/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/brian2 creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/common copying pyNN/common/procedural_api.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/common copying pyNN/common/control.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/common copying pyNN/common/populations.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/common copying pyNN/common/projections.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/common copying pyNN/common/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/common creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/mock copying pyNN/mock/simulator.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/mock copying pyNN/mock/recording.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/mock copying pyNN/mock/populations.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/mock copying pyNN/mock/projections.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/mock copying pyNN/mock/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/mock copying pyNN/mock/standardmodels.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/mock creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuroml copying pyNN/neuroml/simulator.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuroml copying pyNN/neuroml/recording.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuroml copying pyNN/neuroml/populations.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuroml copying pyNN/neuroml/projections.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuroml copying pyNN/neuroml/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuroml creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/recording copying pyNN/recording/files.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/recording copying pyNN/recording/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/recording creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/standardmodels copying pyNN/standardmodels/cells.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/standardmodels copying pyNN/standardmodels/electrodes.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/standardmodels copying pyNN/standardmodels/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/standardmodels copying pyNN/standardmodels/synapses.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/standardmodels creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions copying pyNN/descriptions/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest/standardmodels copying pyNN/nest/standardmodels/cells.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest/standardmodels copying pyNN/nest/standardmodels/electrodes.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest/standardmodels copying pyNN/nest/standardmodels/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest/standardmodels copying pyNN/nest/standardmodels/synapses.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest/standardmodels creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuroml/standardmodels copying pyNN/neuroml/standardmodels/cells.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuroml/standardmodels copying pyNN/neuroml/standardmodels/electrodes.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuroml/standardmodels copying pyNN/neuroml/standardmodels/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuroml/standardmodels copying pyNN/neuroml/standardmodels/synapses.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuroml/standardmodels creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/standardmodels copying pyNN/neuron/standardmodels/cells.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/standardmodels copying pyNN/neuron/standardmodels/electrodes.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/standardmodels copying pyNN/neuron/standardmodels/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/standardmodels copying pyNN/neuron/standardmodels/synapses.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/standardmodels creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/brian2/standardmodels copying pyNN/brian2/standardmodels/cells.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/brian2/standardmodels copying pyNN/brian2/standardmodels/electrodes.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/brian2/standardmodels copying pyNN/brian2/standardmodels/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/brian2/standardmodels copying pyNN/brian2/standardmodels/synapses.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/brian2/standardmodels creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/utility copying pyNN/utility/plotting.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/utility copying pyNN/utility/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/utility creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nineml copying pyNN/nineml/connectors.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nineml copying pyNN/nineml/read.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nineml copying pyNN/nineml/simulator.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nineml copying pyNN/nineml/recording.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nineml copying pyNN/nineml/cells.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nineml copying pyNN/nineml/utility.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nineml copying pyNN/nineml/populations.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nineml copying pyNN/nineml/projections.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nineml copying pyNN/nineml/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nineml copying pyNN/nineml/standardmodels.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nineml copying pyNN/nineml/synapses.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nineml creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/serialization copying pyNN/serialization/sonata.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/serialization copying pyNN/serialization/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/serialization creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/izhikevich.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/adexp.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/gif.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/tmgsyn.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/expisyn.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/tmisyn.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/stochastic_synapse.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/stdwa_softlimits.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/gsfa_grr.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/alphasyn.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/vecstim.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/gap.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/stdwa_songabbott.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/stdwa_vogels2011.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/alphaisyn.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/netstim2.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/poisson_stim_refractory.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/reset.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/stochastic_tsodyksmarkram.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/tsodyksmarkram.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/hh_traub.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/stdwa_symm.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/quantal_stp.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/stdwa_guetig.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/refrac.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/gammastim.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/neuron/nmodl creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest/extensions copying pyNN/nest/extensions/stochastic_stp_synapse.h -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest/extensions copying pyNN/nest/extensions/stochastic_stp_synapse_impl.h -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest/extensions copying pyNN/nest/extensions/simple_stochastic_synapse.h -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest/extensions copying pyNN/nest/extensions/pynn_extensions.h -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest/extensions copying pyNN/nest/extensions/pynn_extensions.cpp -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest/extensions copying pyNN/nest/extensions/CMakeLists.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest/extensions creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest/extensions/sli copying pyNN/nest/extensions/sli/pynn_extensions-init.sli -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/nest/extensions/sli creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/cheetah copying pyNN/descriptions/templates/cheetah/population_old.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/cheetah copying pyNN/descriptions/templates/cheetah/modeltype_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/cheetah copying pyNN/descriptions/templates/cheetah/population_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/cheetah copying pyNN/descriptions/templates/cheetah/synapsedynamics_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/cheetah copying pyNN/descriptions/templates/cheetah/projection_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/cheetah copying pyNN/descriptions/templates/cheetah/populationview_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/cheetah copying pyNN/descriptions/templates/cheetah/assembly_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/cheetah creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/string copying pyNN/descriptions/templates/string/modeltype_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/string copying pyNN/descriptions/templates/string/population_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/string copying pyNN/descriptions/templates/string/synapsedynamics_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/string copying pyNN/descriptions/templates/string/projection_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/string copying pyNN/descriptions/templates/string/populationview_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/string copying pyNN/descriptions/templates/string/assembly_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/string creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/jinja2 copying pyNN/descriptions/templates/jinja2/population_old.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/jinja2 copying pyNN/descriptions/templates/jinja2/modeltype_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/jinja2 copying pyNN/descriptions/templates/jinja2/population_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/jinja2 copying pyNN/descriptions/templates/jinja2/synapsedynamics_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/jinja2 copying pyNN/descriptions/templates/jinja2/projection_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/jinja2 copying pyNN/descriptions/templates/jinja2/populationview_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/jinja2 copying pyNN/descriptions/templates/jinja2/assembly_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/descriptions/templates/jinja2 Unable to find nrnivmodl. It will not be possible to use the pyNN.neuron module. I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN copying pyNN/connectors.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN copying pyNN/parameters.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN copying pyNN/core.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN copying pyNN/multisim.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN copying pyNN/random.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN copying pyNN/space.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN copying pyNN/network.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN copying pyNN/models.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN copying pyNN/errors.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN copying pyNN/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest copying pyNN/nest/connectors.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest copying pyNN/nest/simulator.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest copying pyNN/nest/nineml.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest copying pyNN/nest/random.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest copying pyNN/nest/recording.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest copying pyNN/nest/cells.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest copying pyNN/nest/populations.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest copying pyNN/nest/electrodes.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest copying pyNN/nest/projections.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest copying pyNN/nest/conversion.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest copying pyNN/nest/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest copying pyNN/nest/synapses.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron copying pyNN/neuron/connectors.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron copying pyNN/neuron/simulator.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron copying pyNN/neuron/nineml.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron copying pyNN/neuron/random.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron copying pyNN/neuron/recording.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron copying pyNN/neuron/cells.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron copying pyNN/neuron/populations.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron copying pyNN/neuron/projections.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron copying pyNN/neuron/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/brian2 copying pyNN/brian2/simulator.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/brian2 copying pyNN/brian2/recording.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/brian2 copying pyNN/brian2/cells.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/brian2 copying pyNN/brian2/populations.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/brian2 copying pyNN/brian2/projections.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/brian2 copying pyNN/brian2/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/brian2 creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/common copying pyNN/common/procedural_api.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/common copying pyNN/common/control.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/common copying pyNN/common/populations.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/common copying pyNN/common/projections.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/common copying pyNN/common/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/common creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/mock copying pyNN/mock/simulator.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/mock copying pyNN/mock/recording.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/mock copying pyNN/mock/populations.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/mock copying pyNN/mock/projections.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/mock copying pyNN/mock/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/mock copying pyNN/mock/standardmodels.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/mock creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuroml copying pyNN/neuroml/simulator.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuroml copying pyNN/neuroml/recording.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuroml copying pyNN/neuroml/populations.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuroml copying pyNN/neuroml/projections.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuroml copying pyNN/neuroml/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuroml creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/recording copying pyNN/recording/files.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/recording copying pyNN/recording/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/recording creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/standardmodels copying pyNN/standardmodels/cells.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/standardmodels copying pyNN/standardmodels/electrodes.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/standardmodels copying pyNN/standardmodels/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/standardmodels copying pyNN/standardmodels/synapses.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/standardmodels creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions copying pyNN/descriptions/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest/standardmodels copying pyNN/nest/standardmodels/cells.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest/standardmodels copying pyNN/nest/standardmodels/electrodes.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest/standardmodels copying pyNN/nest/standardmodels/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest/standardmodels copying pyNN/nest/standardmodels/synapses.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest/standardmodels creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuroml/standardmodels copying pyNN/neuroml/standardmodels/cells.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuroml/standardmodels copying pyNN/neuroml/standardmodels/electrodes.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuroml/standardmodels copying pyNN/neuroml/standardmodels/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuroml/standardmodels copying pyNN/neuroml/standardmodels/synapses.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuroml/standardmodels creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/standardmodels copying pyNN/neuron/standardmodels/cells.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/standardmodels copying pyNN/neuron/standardmodels/electrodes.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/standardmodels copying pyNN/neuron/standardmodels/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/standardmodels copying pyNN/neuron/standardmodels/synapses.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/standardmodels creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/brian2/standardmodels copying pyNN/brian2/standardmodels/cells.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/brian2/standardmodels copying pyNN/brian2/standardmodels/electrodes.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/brian2/standardmodels copying pyNN/brian2/standardmodels/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/brian2/standardmodels copying pyNN/brian2/standardmodels/synapses.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/brian2/standardmodels creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/utility copying pyNN/utility/plotting.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/utility copying pyNN/utility/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/utility creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nineml copying pyNN/nineml/connectors.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nineml copying pyNN/nineml/read.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nineml copying pyNN/nineml/simulator.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nineml copying pyNN/nineml/recording.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nineml copying pyNN/nineml/cells.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nineml copying pyNN/nineml/utility.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nineml copying pyNN/nineml/populations.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nineml copying pyNN/nineml/projections.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nineml copying pyNN/nineml/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nineml copying pyNN/nineml/standardmodels.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nineml copying pyNN/nineml/synapses.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nineml creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/serialization copying pyNN/serialization/sonata.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/serialization copying pyNN/serialization/__init__.py -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/serialization creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/izhikevich.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/adexp.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/gif.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/tmgsyn.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/expisyn.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/tmisyn.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/stochastic_synapse.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/stdwa_softlimits.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/gsfa_grr.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/alphasyn.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/vecstim.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/gap.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/stdwa_songabbott.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/stdwa_vogels2011.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/alphaisyn.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/netstim2.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/poisson_stim_refractory.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/reset.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/stochastic_tsodyksmarkram.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/tsodyksmarkram.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/hh_traub.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/stdwa_symm.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/quantal_stp.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/stdwa_guetig.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/refrac.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl copying pyNN/neuron/nmodl/gammastim.mod -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/neuron/nmodl creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest/extensions copying pyNN/nest/extensions/stochastic_stp_synapse.h -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest/extensions copying pyNN/nest/extensions/stochastic_stp_synapse_impl.h -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest/extensions copying pyNN/nest/extensions/simple_stochastic_synapse.h -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest/extensions copying pyNN/nest/extensions/pynn_extensions.h -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest/extensions copying pyNN/nest/extensions/pynn_extensions.cpp -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest/extensions copying pyNN/nest/extensions/CMakeLists.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest/extensions creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest/extensions/sli copying pyNN/nest/extensions/sli/pynn_extensions-init.sli -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/nest/extensions/sli creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/cheetah copying pyNN/descriptions/templates/cheetah/population_old.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/cheetah copying pyNN/descriptions/templates/cheetah/modeltype_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/cheetah copying pyNN/descriptions/templates/cheetah/population_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/cheetah copying pyNN/descriptions/templates/cheetah/synapsedynamics_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/cheetah copying pyNN/descriptions/templates/cheetah/projection_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/cheetah copying pyNN/descriptions/templates/cheetah/populationview_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/cheetah copying pyNN/descriptions/templates/cheetah/assembly_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/cheetah creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/string copying pyNN/descriptions/templates/string/modeltype_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/string copying pyNN/descriptions/templates/string/population_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/string copying pyNN/descriptions/templates/string/synapsedynamics_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/string copying pyNN/descriptions/templates/string/projection_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/string copying pyNN/descriptions/templates/string/populationview_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/string copying pyNN/descriptions/templates/string/assembly_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/string creating /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/jinja2 copying pyNN/descriptions/templates/jinja2/population_old.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/jinja2 copying pyNN/descriptions/templates/jinja2/modeltype_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/jinja2 copying pyNN/descriptions/templates/jinja2/population_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/jinja2 copying pyNN/descriptions/templates/jinja2/synapsedynamics_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/jinja2 copying pyNN/descriptions/templates/jinja2/projection_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/jinja2 copying pyNN/descriptions/templates/jinja2/populationview_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/jinja2 copying pyNN/descriptions/templates/jinja2/assembly_default.txt -> /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/descriptions/templates/jinja2 Unable to find nrnivmodl. It will not be possible to use the pyNN.neuron module. debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pynn-0.10.1' cp -a test test_save rm -f \ test/system/scenarios/__init__.py \ test/unittests/test_brian.py \ test/system/test_brian.py \ test/system/test_brian2.py \ test/system/test_hardware_brainscales.py \ test/system/test_moose.py \ test/system/scenarios/registry.py \ test/system/test_serialization.py \ test/system/test_nest.py \ test/system/test_neuroml.py \ test/system/test_neuron.py \ test/unittests/test_random.py \ test/unittests/test_neuron.py dh_auto_test I: pybuild base:311: cd /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build; python3.12 -m nose -v test test__add__assembly (unittests.test_assembly.AssemblyTest.test__add__assembly) ... /usr/lib/python3.12/unittest/case.py:580: RuntimeWarning: TestResult has no addDuration method warnings.warn("TestResult has no addDuration method", ok test__add__population (unittests.test_assembly.AssemblyTest.test__add__population) ... ok test__homogeneous_synapses (unittests.test_assembly.AssemblyTest.test__homogeneous_synapses) ... ok test__len__ (unittests.test_assembly.AssemblyTest.test__len__) ... ok test__non_homogeneous_synapses (unittests.test_assembly.AssemblyTest.test__non_homogeneous_synapses) ... ok test_add_inplace_assembly (unittests.test_assembly.AssemblyTest.test_add_inplace_assembly) ... ok test_add_inplace_population (unittests.test_assembly.AssemblyTest.test_add_inplace_population) ... ok test_add_invalid_object (unittests.test_assembly.AssemblyTest.test_add_invalid_object) ... ok test_all_cells (unittests.test_assembly.AssemblyTest.test_all_cells) ... ok test_all_iterator (unittests.test_assembly.AssemblyTest.test_all_iterator) ... ok test_conductance_based (unittests.test_assembly.AssemblyTest.test_conductance_based) ... ok test_create_with_non_population_should_raise_Exception (unittests.test_assembly.AssemblyTest.test_create_with_non_population_should_raise_Exception) ... ok test_create_with_one_population (unittests.test_assembly.AssemblyTest.test_create_with_one_population) ... ok test_create_with_two_populations (unittests.test_assembly.AssemblyTest.test_create_with_two_populations) ... ok test_create_with_zero_populations (unittests.test_assembly.AssemblyTest.test_create_with_zero_populations) ... ok test_describe (unittests.test_assembly.AssemblyTest.test_describe) ... ok test_first_and_last_id (unittests.test_assembly.AssemblyTest.test_first_and_last_id) ... ok test_getSpikes (unittests.test_assembly.AssemblyTest.test_getSpikes) ... ok test_get_data_with_gather (unittests.test_assembly.AssemblyTest.test_get_data_with_gather) ... ERROR test_get_gsyn (unittests.test_assembly.AssemblyTest.test_get_gsyn) ... ok test_get_multiple_homogeneous_params_with_gather (unittests.test_assembly.AssemblyTest.test_get_multiple_homogeneous_params_with_gather) ... ok test_get_multiple_inhomogeneous_params_with_gather (unittests.test_assembly.AssemblyTest.test_get_multiple_inhomogeneous_params_with_gather) ... ok test_get_multiple_params_no_gather (unittests.test_assembly.AssemblyTest.test_get_multiple_params_no_gather) ... ok test_get_population (unittests.test_assembly.AssemblyTest.test_get_population) ... ok test_get_sequence_param (unittests.test_assembly.AssemblyTest.test_get_sequence_param) ... ok test_get_single_param_with_gather (unittests.test_assembly.AssemblyTest.test_get_single_param_with_gather) ... ok test_get_v (unittests.test_assembly.AssemblyTest.test_get_v) ... ok test_getitem_array (unittests.test_assembly.AssemblyTest.test_getitem_array) ... ok test_getitem_int (unittests.test_assembly.AssemblyTest.test_getitem_int) ... ok test_getitem_slice (unittests.test_assembly.AssemblyTest.test_getitem_slice) ... ok test_id_to_index (unittests.test_assembly.AssemblyTest.test_id_to_index) ... ok test_id_to_index_with_nonexistent_id (unittests.test_assembly.AssemblyTest.test_id_to_index_with_nonexistent_id) ... ok test_ids_should_not_be_counted_twice (unittests.test_assembly.AssemblyTest.test_ids_should_not_be_counted_twice) ... ok test_initialize (unittests.test_assembly.AssemblyTest.test_initialize) ... ok test_inject (unittests.test_assembly.AssemblyTest.test_inject) ... ok test_iter (unittests.test_assembly.AssemblyTest.test_iter) ... ok test_local_cells (unittests.test_assembly.AssemblyTest.test_local_cells) ... ok test_mask_local (unittests.test_assembly.AssemblyTest.test_mask_local) ... ok test_mean_spike_count (unittests.test_assembly.AssemblyTest.test_mean_spike_count) ... ok test_not_conductance_based (unittests.test_assembly.AssemblyTest.test_not_conductance_based) ... ok test_positions_property (unittests.test_assembly.AssemblyTest.test_positions_property) ... ok test_printSpikes (unittests.test_assembly.AssemblyTest.test_printSpikes) ... ok test_print_gsyn (unittests.test_assembly.AssemblyTest.test_print_gsyn) ... ok test_print_v (unittests.test_assembly.AssemblyTest.test_print_v) ... ok test_repr (unittests.test_assembly.AssemblyTest.test_repr) ... ok test_sample (unittests.test_assembly.AssemblyTest.test_sample) ... ok test_save_positions (unittests.test_assembly.AssemblyTest.test_save_positions) ... ok test_size_property (unittests.test_assembly.AssemblyTest.test_size_property) ... ok test_connect_with_array_weights (unittests.test_connectors_parallel.TestAllToAllConnector.test_connect_with_array_weights) ... ok test_connect_with_delays_None (unittests.test_connectors_parallel.TestAllToAllConnector.test_connect_with_delays_None) ... ok test_connect_with_delays_too_small (unittests.test_connectors_parallel.TestAllToAllConnector.test_connect_with_delays_too_small) ... SKIP: skipping this test until refactoring of delay checks is complete test_connect_with_distance_dependent_weights (unittests.test_connectors_parallel.TestAllToAllConnector.test_connect_with_distance_dependent_weights) ... ok test_connect_with_distance_dependent_weights_and_delays (unittests.test_connectors_parallel.TestAllToAllConnector.test_connect_with_distance_dependent_weights_and_delays) ... ok test_connect_with_list_delays_too_small (unittests.test_connectors_parallel.TestAllToAllConnector.test_connect_with_list_delays_too_small) ... SKIP: skipping this tests until refactoring of delay checks is complete test_connect_with_random_weights_parallel_safe (unittests.test_connectors_parallel.TestAllToAllConnector.test_connect_with_random_weights_parallel_safe) ... ok test_connect_with_scalar_weights_and_delays (unittests.test_connectors_parallel.TestAllToAllConnector.test_connect_with_scalar_weights_and_delays) ... ok test_connect_with_random_weights_parallel_safe (unittests.test_connectors_parallel.TestArrayConnector.test_connect_with_random_weights_parallel_safe) ... ok test_connect_with_scalar_weights_and_delays (unittests.test_connectors_parallel.TestArrayConnector.test_connect_with_scalar_weights_and_delays) ... ok test_connect (unittests.test_connectors_parallel.TestCloneConnector.test_connect) ... ok test_connect_with_pre_post_mismatch (unittests.test_connectors_parallel.TestCloneConnector.test_connect_with_pre_post_mismatch) ... ok test_connect (unittests.test_connectors_parallel.TestDisplacementDependentProbabilityConnector.test_connect) ... ok test_connect_with_default_args (unittests.test_connectors_parallel.TestDistanceDependentProbabilityConnector.test_connect_with_default_args) ... ok test_with_n_larger_than_population_size (unittests.test_connectors_parallel.TestFixedNumberPostConnector.test_with_n_larger_than_population_size) ... ok test_with_n_larger_than_population_size_no_self_connections (unittests.test_connectors_parallel.TestFixedNumberPostConnector.test_with_n_larger_than_population_size_no_self_connections) ... ok test_with_n_smaller_than_population_size (unittests.test_connectors_parallel.TestFixedNumberPostConnector.test_with_n_smaller_than_population_size) ... ok test_with_replacement (unittests.test_connectors_parallel.TestFixedNumberPostConnector.test_with_replacement) ... ok test_with_replacement_no_self_connections (unittests.test_connectors_parallel.TestFixedNumberPostConnector.test_with_replacement_no_self_connections) ... ok test_with_replacement_with_variable_n (unittests.test_connectors_parallel.TestFixedNumberPostConnector.test_with_replacement_with_variable_n) ... ok test_no_replacement_no_self_connections (unittests.test_connectors_parallel.TestFixedNumberPreConnector.test_no_replacement_no_self_connections) ... ok test_no_replacement_parallel_unsafe (unittests.test_connectors_parallel.TestFixedNumberPreConnector.test_no_replacement_parallel_unsafe) ... ok test_with_n_larger_than_population_size (unittests.test_connectors_parallel.TestFixedNumberPreConnector.test_with_n_larger_than_population_size) ... ok test_with_n_larger_than_population_size_no_self_connections (unittests.test_connectors_parallel.TestFixedNumberPreConnector.test_with_n_larger_than_population_size_no_self_connections) ... ok test_with_n_smaller_than_population_size (unittests.test_connectors_parallel.TestFixedNumberPreConnector.test_with_n_smaller_than_population_size) ... ok test_with_replacement (unittests.test_connectors_parallel.TestFixedNumberPreConnector.test_with_replacement) ... ok test_with_replacement_no_self_connections (unittests.test_connectors_parallel.TestFixedNumberPreConnector.test_with_replacement_no_self_connections) ... ok test_with_replacement_parallel_unsafe (unittests.test_connectors_parallel.TestFixedNumberPreConnector.test_with_replacement_parallel_unsafe) ... ok test_with_replacement_with_variable_n (unittests.test_connectors_parallel.TestFixedNumberPreConnector.test_with_replacement_with_variable_n) ... ok test_connect_with_default_args (unittests.test_connectors_parallel.TestFixedProbabilityConnector.test_connect_with_default_args) ... ok test_connect_with_default_args_again (unittests.test_connectors_parallel.TestFixedProbabilityConnector.test_connect_with_default_args_again) ... ok test_connect_with_probability_1 (unittests.test_connectors_parallel.TestFixedProbabilityConnector.test_connect_with_probability_1) ... ok test_connect_with_random_delays_parallel_safe (unittests.test_connectors_parallel.TestFixedProbabilityConnector.test_connect_with_random_delays_parallel_safe) ... ok test_connect_with_weight_function (unittests.test_connectors_parallel.TestFixedProbabilityConnector.test_connect_with_weight_function) ... ok test_1 (unittests.test_connectors_parallel.TestFixedTotalNumberConnector.test_1) ... ok test_connect_with_standard_text_file_distributed (unittests.test_connectors_parallel.TestFromFileConnector.test_connect_with_standard_text_file_distributed) ... ok test_connect_with_standard_text_file_not_distributed (unittests.test_connectors_parallel.TestFromFileConnector.test_connect_with_standard_text_file_not_distributed) ... ok test_with_plastic_synapses_not_distributed (unittests.test_connectors_parallel.TestFromFileConnector.test_with_plastic_synapses_not_distributed) ... ok test_connect_with_out_of_range_index (unittests.test_connectors_parallel.TestFromListConnector.test_connect_with_out_of_range_index) ... ok test_connect_with_valid_list (unittests.test_connectors_parallel.TestFromListConnector.test_connect_with_valid_list) ... ok test_with_plastic_synapse (unittests.test_connectors_parallel.TestFromListConnector.test_with_plastic_synapse) ... ok test_with_stdp_synapse (unittests.test_connectors_parallel.TestFromListConnector.test_with_stdp_synapse) ... ok test_connect_with_index_based_delays (unittests.test_connectors_parallel.TestIndexBasedProbabilityConnector.test_connect_with_index_based_delays) ... ok test_connect_with_index_based_weights (unittests.test_connectors_parallel.TestIndexBasedProbabilityConnector.test_connect_with_index_based_weights) ... ok test_connect_with_scalar_weights_and_delays (unittests.test_connectors_parallel.TestIndexBasedProbabilityConnector.test_connect_with_scalar_weights_and_delays) ... ok test_connect_with_random_weights (unittests.test_connectors_parallel.TestOneToOneConnector.test_connect_with_random_weights) ... ok test_connect_with_scalar_weights_and_delays (unittests.test_connectors_parallel.TestOneToOneConnector.test_connect_with_scalar_weights_and_delays) ... ok test_connect_with_array_weights (unittests.test_connectors_serial.TestAllToAllConnector.test_connect_with_array_weights) ... ok test_connect_with_delays_None (unittests.test_connectors_serial.TestAllToAllConnector.test_connect_with_delays_None) ... ok test_connect_with_delays_too_small (unittests.test_connectors_serial.TestAllToAllConnector.test_connect_with_delays_too_small) ... SKIP: skipping this tests until I figure out how I want to refactor checks test_connect_with_distance_dependent_weights (unittests.test_connectors_serial.TestAllToAllConnector.test_connect_with_distance_dependent_weights) ... ok test_connect_with_distance_dependent_weights_and_delays (unittests.test_connectors_serial.TestAllToAllConnector.test_connect_with_distance_dependent_weights_and_delays) ... ok test_connect_with_list_delays_too_small (unittests.test_connectors_serial.TestAllToAllConnector.test_connect_with_list_delays_too_small) ... SKIP: skipping this tests until I figure out how I want to refactor checks test_connect_with_random_weights_parallel_safe (unittests.test_connectors_serial.TestAllToAllConnector.test_connect_with_random_weights_parallel_safe) ... ok test_connect_with_scalar_weights_and_delays (unittests.test_connectors_serial.TestAllToAllConnector.test_connect_with_scalar_weights_and_delays) ... ok test_connect_with_random_weights_parallel_safe (unittests.test_connectors_serial.TestArrayConnector.test_connect_with_random_weights_parallel_safe) ... ok test_connect_with_scalar_weights_and_delays (unittests.test_connectors_serial.TestArrayConnector.test_connect_with_scalar_weights_and_delays) ... ok test_connect (unittests.test_connectors_serial.TestCloneConnector.test_connect) ... ok test_connect_with_pre_post_mismatch (unittests.test_connectors_serial.TestCloneConnector.test_connect_with_pre_post_mismatch) ... ok test_connect_with_default_args (unittests.test_connectors_serial.TestDistanceDependentProbabilityConnector.test_connect_with_default_args) ... ok test_no_replacement_no_self_connections (unittests.test_connectors_serial.TestFixedNumberPreConnector.test_no_replacement_no_self_connections) ... ok test_no_replacement_parallel_unsafe (unittests.test_connectors_serial.TestFixedNumberPreConnector.test_no_replacement_parallel_unsafe) ... ok test_with_n_larger_than_population_size (unittests.test_connectors_serial.TestFixedNumberPreConnector.test_with_n_larger_than_population_size) ... ok test_with_n_larger_than_population_size_no_self_connections (unittests.test_connectors_serial.TestFixedNumberPreConnector.test_with_n_larger_than_population_size_no_self_connections) ... ok test_with_n_smaller_than_population_size (unittests.test_connectors_serial.TestFixedNumberPreConnector.test_with_n_smaller_than_population_size) ... ok test_with_replacement (unittests.test_connectors_serial.TestFixedNumberPreConnector.test_with_replacement) ... ok test_with_replacement_no_self_connections (unittests.test_connectors_serial.TestFixedNumberPreConnector.test_with_replacement_no_self_connections) ... ok test_with_replacement_parallel_unsafe (unittests.test_connectors_serial.TestFixedNumberPreConnector.test_with_replacement_parallel_unsafe) ... ok test_with_replacement_with_neuron_0_connecting_neuron_0 (unittests.test_connectors_serial.TestFixedNumberPreConnector.test_with_replacement_with_neuron_0_connecting_neuron_0) ... ok test_with_replacement_with_variable_n (unittests.test_connectors_serial.TestFixedNumberPreConnector.test_with_replacement_with_variable_n) ... ok test_connect_weight_function_and_one_post_synaptic_neuron_not_connected (unittests.test_connectors_serial.TestFixedProbabilityConnector.test_connect_weight_function_and_one_post_synaptic_neuron_not_connected) ... ok test_connect_with_default_args (unittests.test_connectors_serial.TestFixedProbabilityConnector.test_connect_with_default_args) ... ok test_connect_with_default_args_again (unittests.test_connectors_serial.TestFixedProbabilityConnector.test_connect_with_default_args_again) ... ok test_connect_with_probability_one (unittests.test_connectors_serial.TestFixedProbabilityConnector.test_connect_with_probability_one) ... ok test_connect_with_random_delays_parallel_safe (unittests.test_connectors_serial.TestFixedProbabilityConnector.test_connect_with_random_delays_parallel_safe) ... ok test_connect_with_weight_function (unittests.test_connectors_serial.TestFixedProbabilityConnector.test_connect_with_weight_function) ... ok test_1 (unittests.test_connectors_serial.TestFixedTotalNumberConnector.test_1) ... ok test_connect_with_standard_text_file_not_distributed (unittests.test_connectors_serial.TestFromFileConnector.test_connect_with_standard_text_file_not_distributed) ... ok test_with_plastic_synapses_not_distributed (unittests.test_connectors_serial.TestFromFileConnector.test_with_plastic_synapses_not_distributed) ... ok test_connect_unique_connection_neuron_0_to_neuron_0 (unittests.test_connectors_serial.TestFromListConnector.test_connect_unique_connection_neuron_0_to_neuron_0) ... ok test_connect_with_empty_list (unittests.test_connectors_serial.TestFromListConnector.test_connect_with_empty_list) ... ok test_connect_with_out_of_range_index (unittests.test_connectors_serial.TestFromListConnector.test_connect_with_out_of_range_index) ... ok test_connect_with_valid_list (unittests.test_connectors_serial.TestFromListConnector.test_connect_with_valid_list) ... ok test_with_plastic_synapse (unittests.test_connectors_serial.TestFromListConnector.test_with_plastic_synapse) ... ok test_connect_with_index_based_delays (unittests.test_connectors_serial.TestIndexBasedProbabilityConnector.test_connect_with_index_based_delays) ... ok test_connect_with_index_based_weights (unittests.test_connectors_serial.TestIndexBasedProbabilityConnector.test_connect_with_index_based_weights) ... ok test_connect_with_scalar_weights_and_delays (unittests.test_connectors_serial.TestIndexBasedProbabilityConnector.test_connect_with_scalar_weights_and_delays) ... ok test_connect_with_random_weights (unittests.test_connectors_serial.TestOneToOneConnector.test_connect_with_random_weights) ... ok test_connect_with_scalar_weights_and_delays (unittests.test_connectors_serial.TestOneToOneConnector.test_connect_with_scalar_weights_and_delays) ... ok unittests.test_core.test_is_list_like_with_tuple ... ok unittests.test_core.test_is_list_like_with_list ... ok unittests.test_core.test_is_list_like_with_iterator ... ok unittests.test_core.test_is_list_like_with_set ... ok unittests.test_core.test_is_list_like_with_numpy_array ... ok unittests.test_core.test_is_list_like_with_string ... ok test_CheetahTE_get_template_from_file (unittests.test_descriptions.DescriptionTest.test_CheetahTE_get_template_from_file) ... ok test_CheetahTE_render (unittests.test_descriptions.DescriptionTest.test_CheetahTE_render) ... ok test_Jinja2TE_get_template_from_file (unittests.test_descriptions.DescriptionTest.test_Jinja2TE_get_template_from_file) ... ok test_Jinja2TE_render (unittests.test_descriptions.DescriptionTest.test_Jinja2TE_render) ... ok test_StringTE_get_template (unittests.test_descriptions.DescriptionTest.test_StringTE_get_template) ... ok test_StringTE_get_template_from_file (unittests.test_descriptions.DescriptionTest.test_StringTE_get_template_from_file) ... ok test_StringTE_render (unittests.test_descriptions.DescriptionTest.test_StringTE_render) ... ok test_get_default_template_engine (unittests.test_descriptions.DescriptionTest.test_get_default_template_engine) ... ok test_render_with_no_template (unittests.test_descriptions.DescriptionTest.test_render_with_no_template) ... ok test_render_with_template (unittests.test_descriptions.DescriptionTest.test_render_with_template) ... ok unittests.test_files.test__savetxt ... ok unittests.test_files.test_create_BaseFile ... ok unittests.test_files.test_del ... ok unittests.test_files.test_close ... ok unittests.test_files.test_StandardTextFile_read ... ok unittests.test_files.test_PickleFile ... ok unittests.test_files.test_HDF5ArrayFile ... ok unittests.test_idmixin.Test_IDMixin.test_celltype_property ... ok unittests.test_idmixin.Test_IDMixin.test_get_initial_value ... ok unittests.test_idmixin.Test_IDMixin.test_getattr_with_nonparameter_attr ... ok unittests.test_idmixin.Test_IDMixin.test_getattr_with_parent_not_set ... ok unittests.test_idmixin.Test_IDMixin.test_inject ... ok unittests.test_idmixin.Test_IDMixin.test_is_standard_cell ... ok unittests.test_idmixin.Test_IDMixin.test_local_property ... ok unittests.test_idmixin.Test_IDMixin.test_position_property ... ok unittests.test_idmixin.Test_IDMixin.test_set_initial_value ... ok unittests.test_lowlevelapi.test_build_create ... ok unittests.test_lowlevelapi.test_build_connect ... ok unittests.test_lowlevelapi.test_set ... ok unittests.test_lowlevelapi.test_build_record ... ok unittests.test_lowlevelapi.test_build_record_with_assembly ... ok test_list_standard_models (unittests.test_nest.TestFunctions.test_list_standard_models) ... SKIP: Requires NEST test_run_0 (unittests.test_nest.TestFunctions.test_run_0) ... SKIP: Requires NEST test_setup (unittests.test_nest.TestFunctions.test_setup) ... SKIP: Requires NEST test__get_parameters (unittests.test_nest.TestPopulation.test__get_parameters) ... SKIP: Requires NEST test_create_native (unittests.test_nest.TestPopulation.test_create_native) ... SKIP: Requires NEST test_set_parameters (unittests.test_nest.TestPopulation.test_set_parameters) ... SKIP: Requires NEST test_set_parameters_scalar (unittests.test_nest.TestPopulation.test_set_parameters_scalar) ... SKIP: Requires NEST test_set_parameters_singular (unittests.test_nest.TestPopulation.test_set_parameters_singular) ... SKIP: Requires NEST test_create_simple (unittests.test_nest.TestProjection.test_create_simple) ... SKIP: Requires NEST test_create_with_homogeneous_common_properties (unittests.test_nest.TestProjection.test_create_with_homogeneous_common_properties) ... SKIP: Requires NEST Native synapse with array-like parameters and CommonProperties. ... SKIP: Requires NEST test_create_with_synapse_dynamics (unittests.test_nest.TestProjection.test_create_with_synapse_dynamics) ... SKIP: Requires NEST test_inhibitory_weight (unittests.test_nest.TestProjection.test_inhibitory_weight) ... SKIP: Requires NEST test_set_array (unittests.test_nest.TestProjection.test_set_array) ... SKIP: Requires NEST test_single_postsynaptic_neuron (unittests.test_nest.TestProjection.test_single_postsynaptic_neuron) ... SKIP: Requires NEST test_single_presynaptic_and_single_postsynaptic_neuron (unittests.test_nest.TestProjection.test_single_presynaptic_and_single_postsynaptic_neuron) ... SKIP: Requires NEST test_single_presynaptic_neuron (unittests.test_nest.TestProjection.test_single_presynaptic_neuron) ... SKIP: Requires NEST cf https://github.com/NeuralEnsemble/PyNN/issues/423 ... SKIP: Requires NEST test_columnwise_iteration (unittests.test_parameters.ParameterSpaceTest.test_columnwise_iteration) ... ok test_columnwise_iteration_single_column (unittests.test_parameters.ParameterSpaceTest.test_columnwise_iteration_single_column) ... ok test_create_with_array_of_sequences (unittests.test_parameters.ParameterSpaceTest.test_create_with_array_of_sequences) ... ok test_create_with_list_of_lists (unittests.test_parameters.ParameterSpaceTest.test_create_with_list_of_lists) ... ok test_create_with_list_of_sequences (unittests.test_parameters.ParameterSpaceTest.test_create_with_list_of_sequences) ... ok test_create_with_sequence (unittests.test_parameters.ParameterSpaceTest.test_create_with_sequence) ... ok test_create_with_tuple (unittests.test_parameters.ParameterSpaceTest.test_create_with_tuple) ... ok test_evaluate (unittests.test_parameters.ParameterSpaceTest.test_evaluate) ... ok test_evaluate_with_mask (unittests.test_parameters.ParameterSpaceTest.test_evaluate_with_mask) ... ok test_evaluate_with_mask_2D (unittests.test_parameters.ParameterSpaceTest.test_evaluate_with_mask_2D) ... ok test_iteration (unittests.test_parameters.ParameterSpaceTest.test_iteration) ... ok test_iteration_items (unittests.test_parameters.ParameterSpaceTest.test_iteration_items) ... ok unittests.test_parameters.test_create_with_int ... ok unittests.test_parameters.test_create_with_float ... ok unittests.test_parameters.test_create_with_list ... ok unittests.test_parameters.test_create_with_array ... ok unittests.test_parameters.test_create_inconsistent ... ok unittests.test_parameters.test_create_with_invalid_string ... ok unittests.test_parameters.test_setitem_nonexpanded_same_value ... ok unittests.test_parameters.test_setitem_invalid_value ... ok unittests.test_parameters.test_setitem_nonexpanded_different_value ... ok unittests.test_parameters.test_columnwise_iteration_with_flat_array ... ok unittests.test_parameters.test_columnwise_iteration_with_structured_array ... ok unittests.test_parameters.test_columnwise_iteration_with_random_array_parallel_safe_no_mask ... ok unittests.test_parameters.test_columnwise_iteration_with_function ... ok unittests.test_parameters.test_columnwise_iteration_with_flat_array_and_mask ... ok unittests.test_parameters.test_columnwise_iteration_with_structured_array_and_mask ... ok unittests.test_parameters.test_columnwise_iteration_with_random_array_parallel_safe_with_mask ... ok unittests.test_parameters.test_evaluate_with_flat_array ... ok unittests.test_parameters.test_evaluate_with_structured_array ... ok unittests.test_parameters.test_evaluate_with_functional_array ... ok unittests.test_parameters.test_iadd_with_flat_array ... ok unittests.test_parameters.test_add_with_flat_array ... ok unittests.test_parameters.test_lt_with_flat_array ... ok unittests.test_parameters.test_lt_with_structured_array ... ok unittests.test_parameters.test_structured_array_lt_array ... ok unittests.test_parameters.test_multiple_operations_with_structured_array ... ok unittests.test_parameters.test_apply_function_to_constant_array ... ok unittests.test_parameters.test_apply_function_to_structured_array ... ok unittests.test_parameters.test_apply_function_to_functional_array ... ok unittests.test_parameters.test_add_two_constant_arrays ... ok unittests.test_parameters.test_add_incommensurate_arrays ... ok unittests.test_parameters.test_getitem_from_constant_array ... ok test___add__three (unittests.test_population.PopulationTest.test___add__three) ... ok test___add__two (unittests.test_population.PopulationTest.test___add__two) ... ok test__getitem__int (unittests.test_population.PopulationTest.test__getitem__int) ... ok test__getitem__invalid (unittests.test_population.PopulationTest.test__getitem__invalid) ... ok test__getitem__list (unittests.test_population.PopulationTest.test__getitem__list) ... ok test__getitem__slice (unittests.test_population.PopulationTest.test__getitem__slice) ... ok test__getitem__tuple (unittests.test_population.PopulationTest.test__getitem__tuple) ... ok test__len__ (unittests.test_population.PopulationTest.test__len__) ... ok test_can_record (unittests.test_population.PopulationTest.test_can_record) ... ok test_create_with_empty_spike_source_array (unittests.test_population.PopulationTest.test_create_with_empty_spike_source_array) ... ok test_create_with_implicit_grid (unittests.test_population.PopulationTest.test_create_with_implicit_grid) ... ok test_create_with_parameters (unittests.test_population.PopulationTest.test_create_with_parameters) ... ok test_create_with_standard_cell_simple (unittests.test_population.PopulationTest.test_create_with_standard_cell_simple) ... ok test_describe (unittests.test_population.PopulationTest.test_describe) ... ok test_getSpikes (unittests.test_population.PopulationTest.test_getSpikes) ... ok test_get_data_with_gather (unittests.test_population.PopulationTest.test_get_data_with_gather) ... ok test_get_gsyn (unittests.test_population.PopulationTest.test_get_gsyn) ... ok test_get_multiple_homogeneous_params_with_gather (unittests.test_population.PopulationTest.test_get_multiple_homogeneous_params_with_gather) ... ok test_get_multiple_inhomogeneous_params_with_gather (unittests.test_population.PopulationTest.test_get_multiple_inhomogeneous_params_with_gather) ... ok test_get_multiple_params_no_gather (unittests.test_population.PopulationTest.test_get_multiple_params_no_gather) ... ok test_get_positions (unittests.test_population.PopulationTest.test_get_positions) ... ok test_get_sequence_param (unittests.test_population.PopulationTest.test_get_sequence_param) ... ok test_get_single_param_with_gather (unittests.test_population.PopulationTest.test_get_single_param_with_gather) ... ok test_get_spike_counts (unittests.test_population.PopulationTest.test_get_spike_counts) ... ok test_get_spikes_with_gather (unittests.test_population.PopulationTest.test_get_spikes_with_gather) ... ok test_get_v (unittests.test_population.PopulationTest.test_get_v) ... ok test_id_to_index (unittests.test_population.PopulationTest.test_id_to_index) ... ok test_id_to_index_with_array (unittests.test_population.PopulationTest.test_id_to_index_with_array) ... ok test_id_to_index_with_invalid_id (unittests.test_population.PopulationTest.test_id_to_index_with_invalid_id) ... ok test_id_to_index_with_invalid_ids (unittests.test_population.PopulationTest.test_id_to_index_with_invalid_ids) ... ok test_id_to_index_with_populationview (unittests.test_population.PopulationTest.test_id_to_index_with_populationview) ... ok test_initialize (unittests.test_population.PopulationTest.test_initialize) ... ok test_inject (unittests.test_population.PopulationTest.test_inject) ... ok test_inject_into_invalid_celltype (unittests.test_population.PopulationTest.test_inject_into_invalid_celltype) ... ok test_iter (unittests.test_population.PopulationTest.test_iter) ... ok test_meanSpikeCount (unittests.test_population.PopulationTest.test_meanSpikeCount) ... ok test_mean_spike_count (unittests.test_population.PopulationTest.test_mean_spike_count) ... ok test_nearest (unittests.test_population.PopulationTest.test_nearest) ... ok test_position_generator (unittests.test_population.PopulationTest.test_position_generator) ... ok test_printSpikes (unittests.test_population.PopulationTest.test_printSpikes) ... ok test_print_gsyn (unittests.test_population.PopulationTest.test_print_gsyn) ... ok test_print_v (unittests.test_population.PopulationTest.test_print_v) ... ok test_record_gsyn (unittests.test_population.PopulationTest.test_record_gsyn) ... ok test_record_invalid_variable (unittests.test_population.PopulationTest.test_record_invalid_variable) ... ok test_record_v (unittests.test_population.PopulationTest.test_record_v) ... ok test_record_with_multiple_variables (unittests.test_population.PopulationTest.test_record_with_multiple_variables) ... ok test_record_with_single_variable (unittests.test_population.PopulationTest.test_record_with_single_variable) ... ok test_record_with_v_and_spikes (unittests.test_population.PopulationTest.test_record_with_v_and_spikes) ... ok test_rset (unittests.test_population.PopulationTest.test_rset) ... ok test_sample (unittests.test_population.PopulationTest.test_sample) ... ok test_save_positions (unittests.test_population.PopulationTest.test_save_positions) ... ok test_set (unittests.test_population.PopulationTest.test_set) ... ok test_set_array (unittests.test_population.PopulationTest.test_set_array) ... ok test_set_invalid_name (unittests.test_population.PopulationTest.test_set_invalid_name) ... ok test_set_invalid_type (unittests.test_population.PopulationTest.test_set_invalid_type) ... ok test_set_positions (unittests.test_population.PopulationTest.test_set_positions) ... ok test_set_random_distribution_parallel_safe (unittests.test_population.PopulationTest.test_set_random_distribution_parallel_safe) ... ok test_set_random_distribution_parallel_unsafe (unittests.test_population.PopulationTest.test_set_random_distribution_parallel_unsafe) ... ok test_set_sequence (unittests.test_population.PopulationTest.test_set_sequence) ... ok test_set_structure (unittests.test_population.PopulationTest.test_set_structure) ... ok test_tset (unittests.test_population.PopulationTest.test_tset) ... ok test___add__three (unittests.test_populationview.PopulationViewTest.test___add__three) ... ok test___add__two (unittests.test_populationview.PopulationViewTest.test___add__two) ... ok test__getitem__int (unittests.test_populationview.PopulationViewTest.test__getitem__int) ... ok test__getitem__invalid (unittests.test_populationview.PopulationViewTest.test__getitem__invalid) ... ok test__getitem__list (unittests.test_populationview.PopulationViewTest.test__getitem__list) ... ok test__getitem__slice (unittests.test_populationview.PopulationViewTest.test__getitem__slice) ... ok test__getitem__tuple (unittests.test_populationview.PopulationViewTest.test__getitem__tuple) ... ok test__len__ (unittests.test_populationview.PopulationViewTest.test__len__) ... ok test_can_record (unittests.test_populationview.PopulationViewTest.test_can_record) ... ok test_create_with_boolean_array_selector (unittests.test_populationview.PopulationViewTest.test_create_with_boolean_array_selector) ... ok test_create_with_index_array_selector (unittests.test_populationview.PopulationViewTest.test_create_with_index_array_selector) ... ok test_create_with_slice_selector (unittests.test_populationview.PopulationViewTest.test_create_with_slice_selector) ... ok test_describe (unittests.test_populationview.PopulationViewTest.test_describe) ... ok test_get_data_with_gather (unittests.test_populationview.PopulationViewTest.test_get_data_with_gather) ... ok test_get_multiple_homogeneous_params_with_gather (unittests.test_populationview.PopulationViewTest.test_get_multiple_homogeneous_params_with_gather) ... ok test_get_multiple_inhomogeneous_params_with_gather (unittests.test_populationview.PopulationViewTest.test_get_multiple_inhomogeneous_params_with_gather) ... ok test_get_positions (unittests.test_populationview.PopulationViewTest.test_get_positions) ... ok test_get_sequence_param (unittests.test_populationview.PopulationViewTest.test_get_sequence_param) ... ok test_get_single_homogeneous_param_with_gather (unittests.test_populationview.PopulationViewTest.test_get_single_homogeneous_param_with_gather) ... ok test_get_spike_counts (unittests.test_populationview.PopulationViewTest.test_get_spike_counts) ... ok test_id_to_index (unittests.test_populationview.PopulationViewTest.test_id_to_index) ... ok test_id_to_index_with_array (unittests.test_populationview.PopulationViewTest.test_id_to_index_with_array) ... ok test_id_to_index_with_invalid_id (unittests.test_populationview.PopulationViewTest.test_id_to_index_with_invalid_id) ... ok test_index_from_parent_index (unittests.test_populationview.PopulationViewTest.test_index_from_parent_index) ... ok test_index_in_grandparent (unittests.test_populationview.PopulationViewTest.test_index_in_grandparent) ... ok test_inject (unittests.test_populationview.PopulationViewTest.test_inject) ... ok test_inject_into_invalid_celltype (unittests.test_populationview.PopulationViewTest.test_inject_into_invalid_celltype) ... ok test_iter (unittests.test_populationview.PopulationViewTest.test_iter) ... ok test_mean_spike_count (unittests.test_populationview.PopulationViewTest.test_mean_spike_count) ... ok test_nearest (unittests.test_populationview.PopulationViewTest.test_nearest) ... ok test_position_generator (unittests.test_populationview.PopulationViewTest.test_position_generator) ... ok test_record_gsyn (unittests.test_populationview.PopulationViewTest.test_record_gsyn) ... ok test_record_invalid_variable (unittests.test_populationview.PopulationViewTest.test_record_invalid_variable) ... ok test_record_v (unittests.test_populationview.PopulationViewTest.test_record_v) ... ok test_record_with_multiple_variables (unittests.test_populationview.PopulationViewTest.test_record_with_multiple_variables) ... ok test_record_with_single_variable (unittests.test_populationview.PopulationViewTest.test_record_with_single_variable) ... ok test_record_with_v_spikes (unittests.test_populationview.PopulationViewTest.test_record_with_v_spikes) ... ok test_rset (unittests.test_populationview.PopulationViewTest.test_rset) ... ok test_sample (unittests.test_populationview.PopulationViewTest.test_sample) ... ok test_save_positions (unittests.test_populationview.PopulationViewTest.test_save_positions) ... ok test_set (unittests.test_populationview.PopulationViewTest.test_set) ... ok test_set_array (unittests.test_populationview.PopulationViewTest.test_set_array) ... ok test_set_invalid_name (unittests.test_populationview.PopulationViewTest.test_set_invalid_name) ... ok test_set_invalid_type (unittests.test_populationview.PopulationViewTest.test_set_invalid_type) ... ok test_set_sequence (unittests.test_populationview.PopulationViewTest.test_set_sequence) ... ok test_set_structure (unittests.test_populationview.PopulationViewTest.test_set_structure) ... ok test_structure_property (unittests.test_populationview.PopulationViewTest.test_structure_property) ... ok test_tset (unittests.test_populationview.PopulationViewTest.test_tset) ... ok test_check_weights_with_array (unittests.test_projection.CheckTest.test_check_weights_with_array) ... ok test_check_weights_with_invalid_value (unittests.test_projection.CheckTest.test_check_weights_with_invalid_value) ... ok test_check_weights_with_scalar (unittests.test_projection.CheckTest.test_check_weights_with_scalar) ... ok test_create_simple (unittests.test_projection.ProjectionTest.test_create_simple) ... ok test_create_with_default_receptor_type (unittests.test_projection.ProjectionTest.test_create_with_default_receptor_type) ... ok test_create_with_fast_synapse_dynamics (unittests.test_projection.ProjectionTest.test_create_with_fast_synapse_dynamics) ... ok test_create_with_homogeneous_postsynaptic_assembly (unittests.test_projection.ProjectionTest.test_create_with_homogeneous_postsynaptic_assembly) ... ok test_create_with_inhomogeneous_postsynaptic_assembly (unittests.test_projection.ProjectionTest.test_create_with_inhomogeneous_postsynaptic_assembly) ... ok test_create_with_invalid_type (unittests.test_projection.ProjectionTest.test_create_with_invalid_type) ... ok test_create_with_presynaptic_assembly (unittests.test_projection.ProjectionTest.test_create_with_presynaptic_assembly) ... ok test_describe (unittests.test_projection.ProjectionTest.test_describe) ... ok test_get_plasticity_attribute_as_list (unittests.test_projection.ProjectionTest.test_get_plasticity_attribute_as_list) ... ok test_get_weights_as_array (unittests.test_projection.ProjectionTest.test_get_weights_as_array) ... ok test_get_weights_as_array_with_multapses (unittests.test_projection.ProjectionTest.test_get_weights_as_array_with_multapses) ... ok test_get_weights_as_array_with_multapses_min (unittests.test_projection.ProjectionTest.test_get_weights_as_array_with_multapses_min) ... ok test_get_weights_as_list (unittests.test_projection.ProjectionTest.test_get_weights_as_list) ... ok test_get_weights_as_list_no_address (unittests.test_projection.ProjectionTest.test_get_weights_as_list_no_address) ... ok test_parameter_StaticSynapse_random_distribution (unittests.test_projection.ProjectionTest.test_parameter_StaticSynapse_random_distribution) ... ok test_parameter_TsodyksMarkramSynapse_random_distribution (unittests.test_projection.ProjectionTest.test_parameter_TsodyksMarkramSynapse_random_distribution) ... ok test_save_connections_with_gather (unittests.test_projection.ProjectionTest.test_save_connections_with_gather) ... ok test_size_with_gather (unittests.test_projection.ProjectionTest.test_size_with_gather) ... ok test_synapse_with_lambda_parameter (unittests.test_projection.ProjectionTest.test_synapse_with_lambda_parameter) ... ok test_weightHistogram (unittests.test_projection.ProjectionTest.test_weightHistogram) ... ok unittests.test_recording.test_Recorder_create ... ok unittests.test_recording.test_Recorder_invalid_variable ... ok unittests.test_recording.test_record ... ok unittests.test_recording.test_filter_recorded ... ok unittests.test_recording.test_get ... ERROR unittests.test_recording.test_metadata_property ... ok test_callbacks (unittests.test_simulation_control.TestSimulationControl.test_callbacks) ... ok test_current_time (unittests.test_simulation_control.TestSimulationControl.test_current_time) ... ok test_current_time_two_runs (unittests.test_simulation_control.TestSimulationControl.test_current_time_two_runs) ... ok test_end (unittests.test_simulation_control.TestSimulationControl.test_end) ... ok test_max_delay (unittests.test_simulation_control.TestSimulationControl.test_max_delay) ... ok test_min_delay (unittests.test_simulation_control.TestSimulationControl.test_min_delay) ... ok test_num_processes (unittests.test_simulation_control.TestSimulationControl.test_num_processes) ... SKIP: test requires mpi4py test_rank (unittests.test_simulation_control.TestSimulationControl.test_rank) ... SKIP: test requires mpi4py test_reset (unittests.test_simulation_control.TestSimulationControl.test_reset) ... ok test_run (unittests.test_simulation_control.TestSimulationControl.test_run) ... ok test_run_twice (unittests.test_simulation_control.TestSimulationControl.test_run_twice) ... ok test_setup (unittests.test_simulation_control.TestSimulationControl.test_setup) ... ok test_time_step (unittests.test_simulation_control.TestSimulationControl.test_time_step) ... ok unittests.test_space.Grid2D_Test.test_calculate_size ... ok unittests.test_space.Grid2D_Test.test_generate_positions ... ok unittests.test_space.Grid3D_Test.test_calculate_size ... ok unittests.test_space.Grid3D_Test.test_generate_positions ... ok test__eq__ (unittests.test_space.LineTest.test__eq__) ... ok test_generate_positions (unittests.test_space.LineTest.test_generate_positions) ... ok test_generate_positions_default_parameters (unittests.test_space.LineTest.test_generate_positions_default_parameters) ... ok test_get_parameters (unittests.test_space.LineTest.test_get_parameters) ... ok test_cylindrical_space (unittests.test_space.SpaceTest.test_cylindrical_space) ... ok test_generator_for_infinite_space_with_3D_distances (unittests.test_space.SpaceTest.test_generator_for_infinite_space_with_3D_distances) ... ok test_infinite_space_with_3D_distances (unittests.test_space.SpaceTest.test_infinite_space_with_3D_distances) ... ok test_infinite_space_with_collapsed_axes (unittests.test_space.SpaceTest.test_infinite_space_with_collapsed_axes) ... ok test_infinite_space_with_scale_and_offset (unittests.test_space.SpaceTest.test_infinite_space_with_scale_and_offset) ... ok unittests.test_space.TestCuboid.test_sample ... ok unittests.test_space.TestRandomStructure.test_generate_positions ... ok unittests.test_space.TestSphere.test__create ... ok unittests.test_space.TestSphere.test_sample ... ok unittests.test_space.test_distance ... ok unittests.test_standardmodels.test_build_translations ... ok unittests.test_standardmodels.test_has_parameter ... ok unittests.test_standardmodels.test_get_parameter_names ... ok Instantiating a StandardModelType should set self.parameter_space to a ... ok unittests.test_standardmodels.test_translate ... ok unittests.test_standardmodels.test_translate_with_invalid_transformation ... ok unittests.test_standardmodels.test_translate_with_divide_by_zero_error ... ok unittests.test_standardmodels.test_reverse_translate ... ok unittests.test_standardmodels.test_reverse_translate_with_invalid_transformation ... ok unittests.test_standardmodels.test_simple_parameters ... ok unittests.test_standardmodels.test_scaled_parameters ... ok unittests.test_standardmodels.test_computed_parameters ... ok unittests.test_standardmodels.test_describe ... ok unittests.test_standardmodels.test_describe_synapse_type ... ok unittests.test_standardmodels.test_STDPMechanism_create ... ok unittests.test_standardmodels.test_STDPMechanism_create_invalid_types ... ok test_get_script_args (unittests.test_utility_functions.GetArgTests.test_get_script_args) ... ok test_notify (unittests.test_utility_functions.NotifyTests.test_notify) ... ok test_dynamic (unittests.test_utility_functions.ProgressBarTest.test_dynamic) ... ok test_fixed (unittests.test_utility_functions.ProgressBarTest.test_fixed) ... ok test_diff (unittests.test_utility_functions.TimerTest.test_diff) ... ok test_timer (unittests.test_utility_functions.TimerTest.test_timer) ... ok ====================================================================== ERROR: test_get_data_with_gather (unittests.test_assembly.AssemblyTest.test_get_data_with_gather) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/test/unittests/test_assembly.py", line 358, in test_get_data_with_gather data = a.get_data(gather=True) ^^^^^^^^^^^^^^^^^^^^^^^ File "/build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/common/populations.py", line 1412, in get_data merged_block.merge(block) File "/usr/lib/python3/dist-packages/neo/core/container.py", line 525, in merge lookup[obj.name].merge(obj) File "/usr/lib/python3/dist-packages/neo/core/container.py", line 542, in merge newobj = getattr(self, container)[ind].merge(obj) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/neo/core/basesignal.py", line 243, in merge raise MergeError("Cannot merge these two signals as they belong to different segments.") neo.core.baseneo.MergeError: Cannot merge these two signals as they belong to different segments. -------------------- >> begin captured logging << -------------------- PyNN: DEBUG: In Population 'population36', initialising v to -65.0 PyNN: DEBUG: In Population 'population36', initialising gsyn_exc to 0.0 PyNN: DEBUG: In Population 'population36', initialising gsyn_inh to 0.0 PyNN: DEBUG: In Population 'population37', initialising v to -65.0 PyNN: DEBUG: In Population 'population37', initialising gsyn_exc to 0.0 PyNN: DEBUG: In Population 'population37', initialising gsyn_inh to 0.0 PyNN: DEBUG: In Population 'population38', initialising v to -70.6 PyNN: DEBUG: In Population 'population38', initialising w to 0.0 PyNN: DEBUG: In Population 'population38', initialising gsyn_exc to 0.0 PyNN: DEBUG: In Population 'population38', initialising gsyn_inh to 0.0 PyNN: DEBUG: population38.record('v') PyNN: DEBUG: Recorder.record(<3 cells>) PyNN: DEBUG: population36.record('v') PyNN: DEBUG: Recorder.record(<11 cells>) PyNN: DEBUG: population37.record('v') PyNN: DEBUG: Recorder.record(<6 cells>) PyNN: DEBUG: 0 **** ids=[42 43 44 45 46 47 48 49 50 51 52], channels=[ 0 1 2 3 4 5 6 7 8 9 10] PyNN: DEBUG: Adding to cache PyNN: DEBUG: 0 **** ids=[59 60 61], channels=[0 1 2] PyNN: DEBUG: Adding to cache PyNN: DEBUG: 0 **** ids=[53 54 55 56 57 58], channels=[0 1 2 3 4 5] PyNN: DEBUG: Adding to cache PyNN: DEBUG: population38.record('spikes') PyNN: DEBUG: Recorder.record(<3 cells>) PyNN: DEBUG: population36.record('spikes') PyNN: DEBUG: Recorder.record(<11 cells>) PyNN: DEBUG: population37.record('spikes') PyNN: DEBUG: Recorder.record(<6 cells>) PyNN: DEBUG: population38.record('w') PyNN: DEBUG: Recorder.record(<3 cells>) PyNN: DEBUG: 0 **** ids=[59 60 61], channels=[0 1 2] PyNN: DEBUG: 0 **** ids=[59 60 61], channels=[0 1 2] PyNN: DEBUG: 0 **** ids=[42 43 44 45 46 47 48 49 50 51 52], channels=[ 0 1 2 3 4 5 6 7 8 9 10] PyNN: DEBUG: 0 **** ids=[53 54 55 56 57 58], channels=[0 1 2 3 4 5] PyNN: DEBUG: 0: population38 PyNN: DEBUG: 0: segment000 PyNN: DEBUG: (258, 3) v PyNN: DEBUG: 1: segment001 PyNN: DEBUG: (146, 3) w PyNN: DEBUG: (146, 3) v PyNN: DEBUG: 1: population36 PyNN: DEBUG: 0: segment000 PyNN: DEBUG: (258, 11) v PyNN: DEBUG: 1: segment001 PyNN: DEBUG: (146, 11) v PyNN: DEBUG: 2: population37 PyNN: DEBUG: 0: segment000 PyNN: DEBUG: (258, 6) v PyNN: DEBUG: 1: segment001 PyNN: DEBUG: (146, 6) v --------------------- >> end captured logging << --------------------- ====================================================================== ERROR: unittests.test_recording.test_get ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/test/unittests/test_recording.py", line 167, in test_get data = r.get('spikes') ^^^^^^^^^^^^^^^ File "/build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build/pyNN/recording/__init__.py", line 375, in get data.segments.append(self._get_current_segment( File "/usr/lib/python3/dist-packages/neo/core/objectlist.py", line 86, in append self._handle_append(obj) File "/usr/lib/python3/dist-packages/neo/core/objectlist.py", line 34, in _handle_append raise TypeError(f"Object is a {type(obj)}. It should be one of {self.allowed_contents}.") TypeError: Object is a . It should be one of (,). ---------------------------------------------------------------------- Ran 426 tests in 2.102s FAILED (SKIP=24, errors=2) E: pybuild pybuild:389: test: plugin distutils failed with: exit code=1: cd /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.12_pynn/build; python3.12 -m nose -v test I: pybuild base:311: cd /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build; python3.11 -m nose -v test test__add__assembly (unittests.test_assembly.AssemblyTest.test__add__assembly) ... ok test__add__population (unittests.test_assembly.AssemblyTest.test__add__population) ... ok test__homogeneous_synapses (unittests.test_assembly.AssemblyTest.test__homogeneous_synapses) ... ok test__len__ (unittests.test_assembly.AssemblyTest.test__len__) ... ok test__non_homogeneous_synapses (unittests.test_assembly.AssemblyTest.test__non_homogeneous_synapses) ... ok test_add_inplace_assembly (unittests.test_assembly.AssemblyTest.test_add_inplace_assembly) ... ok test_add_inplace_population (unittests.test_assembly.AssemblyTest.test_add_inplace_population) ... ok test_add_invalid_object (unittests.test_assembly.AssemblyTest.test_add_invalid_object) ... ok test_all_cells (unittests.test_assembly.AssemblyTest.test_all_cells) ... ok test_all_iterator (unittests.test_assembly.AssemblyTest.test_all_iterator) ... ok test_conductance_based (unittests.test_assembly.AssemblyTest.test_conductance_based) ... ok test_create_with_non_population_should_raise_Exception (unittests.test_assembly.AssemblyTest.test_create_with_non_population_should_raise_Exception) ... ok test_create_with_one_population (unittests.test_assembly.AssemblyTest.test_create_with_one_population) ... ok test_create_with_two_populations (unittests.test_assembly.AssemblyTest.test_create_with_two_populations) ... ok test_create_with_zero_populations (unittests.test_assembly.AssemblyTest.test_create_with_zero_populations) ... ok test_describe (unittests.test_assembly.AssemblyTest.test_describe) ... ok test_first_and_last_id (unittests.test_assembly.AssemblyTest.test_first_and_last_id) ... ok test_getSpikes (unittests.test_assembly.AssemblyTest.test_getSpikes) ... ok test_get_data_with_gather (unittests.test_assembly.AssemblyTest.test_get_data_with_gather) ... ERROR test_get_gsyn (unittests.test_assembly.AssemblyTest.test_get_gsyn) ... ok test_get_multiple_homogeneous_params_with_gather (unittests.test_assembly.AssemblyTest.test_get_multiple_homogeneous_params_with_gather) ... ok test_get_multiple_inhomogeneous_params_with_gather (unittests.test_assembly.AssemblyTest.test_get_multiple_inhomogeneous_params_with_gather) ... ok test_get_multiple_params_no_gather (unittests.test_assembly.AssemblyTest.test_get_multiple_params_no_gather) ... ok test_get_population (unittests.test_assembly.AssemblyTest.test_get_population) ... ok test_get_sequence_param (unittests.test_assembly.AssemblyTest.test_get_sequence_param) ... ok test_get_single_param_with_gather (unittests.test_assembly.AssemblyTest.test_get_single_param_with_gather) ... ok test_get_v (unittests.test_assembly.AssemblyTest.test_get_v) ... ok test_getitem_array (unittests.test_assembly.AssemblyTest.test_getitem_array) ... ok test_getitem_int (unittests.test_assembly.AssemblyTest.test_getitem_int) ... ok test_getitem_slice (unittests.test_assembly.AssemblyTest.test_getitem_slice) ... ok test_id_to_index (unittests.test_assembly.AssemblyTest.test_id_to_index) ... ok test_id_to_index_with_nonexistent_id (unittests.test_assembly.AssemblyTest.test_id_to_index_with_nonexistent_id) ... ok test_ids_should_not_be_counted_twice (unittests.test_assembly.AssemblyTest.test_ids_should_not_be_counted_twice) ... ok test_initialize (unittests.test_assembly.AssemblyTest.test_initialize) ... ok test_inject (unittests.test_assembly.AssemblyTest.test_inject) ... ok test_iter (unittests.test_assembly.AssemblyTest.test_iter) ... ok test_local_cells (unittests.test_assembly.AssemblyTest.test_local_cells) ... ok test_mask_local (unittests.test_assembly.AssemblyTest.test_mask_local) ... ok test_mean_spike_count (unittests.test_assembly.AssemblyTest.test_mean_spike_count) ... ok test_not_conductance_based (unittests.test_assembly.AssemblyTest.test_not_conductance_based) ... ok test_positions_property (unittests.test_assembly.AssemblyTest.test_positions_property) ... ok test_printSpikes (unittests.test_assembly.AssemblyTest.test_printSpikes) ... ok test_print_gsyn (unittests.test_assembly.AssemblyTest.test_print_gsyn) ... ok test_print_v (unittests.test_assembly.AssemblyTest.test_print_v) ... ok test_repr (unittests.test_assembly.AssemblyTest.test_repr) ... ok test_sample (unittests.test_assembly.AssemblyTest.test_sample) ... ok test_save_positions (unittests.test_assembly.AssemblyTest.test_save_positions) ... ok test_size_property (unittests.test_assembly.AssemblyTest.test_size_property) ... ok test_connect_with_array_weights (unittests.test_connectors_parallel.TestAllToAllConnector.test_connect_with_array_weights) ... ok test_connect_with_delays_None (unittests.test_connectors_parallel.TestAllToAllConnector.test_connect_with_delays_None) ... ok test_connect_with_delays_too_small (unittests.test_connectors_parallel.TestAllToAllConnector.test_connect_with_delays_too_small) ... SKIP: skipping this test until refactoring of delay checks is complete test_connect_with_distance_dependent_weights (unittests.test_connectors_parallel.TestAllToAllConnector.test_connect_with_distance_dependent_weights) ... ok test_connect_with_distance_dependent_weights_and_delays (unittests.test_connectors_parallel.TestAllToAllConnector.test_connect_with_distance_dependent_weights_and_delays) ... ok test_connect_with_list_delays_too_small (unittests.test_connectors_parallel.TestAllToAllConnector.test_connect_with_list_delays_too_small) ... SKIP: skipping this tests until refactoring of delay checks is complete test_connect_with_random_weights_parallel_safe (unittests.test_connectors_parallel.TestAllToAllConnector.test_connect_with_random_weights_parallel_safe) ... ok test_connect_with_scalar_weights_and_delays (unittests.test_connectors_parallel.TestAllToAllConnector.test_connect_with_scalar_weights_and_delays) ... ok test_connect_with_random_weights_parallel_safe (unittests.test_connectors_parallel.TestArrayConnector.test_connect_with_random_weights_parallel_safe) ... ok test_connect_with_scalar_weights_and_delays (unittests.test_connectors_parallel.TestArrayConnector.test_connect_with_scalar_weights_and_delays) ... ok test_connect (unittests.test_connectors_parallel.TestCloneConnector.test_connect) ... ok test_connect_with_pre_post_mismatch (unittests.test_connectors_parallel.TestCloneConnector.test_connect_with_pre_post_mismatch) ... ok test_connect (unittests.test_connectors_parallel.TestDisplacementDependentProbabilityConnector.test_connect) ... ok test_connect_with_default_args (unittests.test_connectors_parallel.TestDistanceDependentProbabilityConnector.test_connect_with_default_args) ... ok test_with_n_larger_than_population_size (unittests.test_connectors_parallel.TestFixedNumberPostConnector.test_with_n_larger_than_population_size) ... ok test_with_n_larger_than_population_size_no_self_connections (unittests.test_connectors_parallel.TestFixedNumberPostConnector.test_with_n_larger_than_population_size_no_self_connections) ... ok test_with_n_smaller_than_population_size (unittests.test_connectors_parallel.TestFixedNumberPostConnector.test_with_n_smaller_than_population_size) ... ok test_with_replacement (unittests.test_connectors_parallel.TestFixedNumberPostConnector.test_with_replacement) ... ok test_with_replacement_no_self_connections (unittests.test_connectors_parallel.TestFixedNumberPostConnector.test_with_replacement_no_self_connections) ... ok test_with_replacement_with_variable_n (unittests.test_connectors_parallel.TestFixedNumberPostConnector.test_with_replacement_with_variable_n) ... ok test_no_replacement_no_self_connections (unittests.test_connectors_parallel.TestFixedNumberPreConnector.test_no_replacement_no_self_connections) ... ok test_no_replacement_parallel_unsafe (unittests.test_connectors_parallel.TestFixedNumberPreConnector.test_no_replacement_parallel_unsafe) ... ok test_with_n_larger_than_population_size (unittests.test_connectors_parallel.TestFixedNumberPreConnector.test_with_n_larger_than_population_size) ... ok test_with_n_larger_than_population_size_no_self_connections (unittests.test_connectors_parallel.TestFixedNumberPreConnector.test_with_n_larger_than_population_size_no_self_connections) ... ok test_with_n_smaller_than_population_size (unittests.test_connectors_parallel.TestFixedNumberPreConnector.test_with_n_smaller_than_population_size) ... ok test_with_replacement (unittests.test_connectors_parallel.TestFixedNumberPreConnector.test_with_replacement) ... ok test_with_replacement_no_self_connections (unittests.test_connectors_parallel.TestFixedNumberPreConnector.test_with_replacement_no_self_connections) ... ok test_with_replacement_parallel_unsafe (unittests.test_connectors_parallel.TestFixedNumberPreConnector.test_with_replacement_parallel_unsafe) ... ok test_with_replacement_with_variable_n (unittests.test_connectors_parallel.TestFixedNumberPreConnector.test_with_replacement_with_variable_n) ... ok test_connect_with_default_args (unittests.test_connectors_parallel.TestFixedProbabilityConnector.test_connect_with_default_args) ... ok test_connect_with_default_args_again (unittests.test_connectors_parallel.TestFixedProbabilityConnector.test_connect_with_default_args_again) ... ok test_connect_with_probability_1 (unittests.test_connectors_parallel.TestFixedProbabilityConnector.test_connect_with_probability_1) ... ok test_connect_with_random_delays_parallel_safe (unittests.test_connectors_parallel.TestFixedProbabilityConnector.test_connect_with_random_delays_parallel_safe) ... ok test_connect_with_weight_function (unittests.test_connectors_parallel.TestFixedProbabilityConnector.test_connect_with_weight_function) ... ok test_1 (unittests.test_connectors_parallel.TestFixedTotalNumberConnector.test_1) ... ok test_connect_with_standard_text_file_distributed (unittests.test_connectors_parallel.TestFromFileConnector.test_connect_with_standard_text_file_distributed) ... ok test_connect_with_standard_text_file_not_distributed (unittests.test_connectors_parallel.TestFromFileConnector.test_connect_with_standard_text_file_not_distributed) ... ok test_with_plastic_synapses_not_distributed (unittests.test_connectors_parallel.TestFromFileConnector.test_with_plastic_synapses_not_distributed) ... ok test_connect_with_out_of_range_index (unittests.test_connectors_parallel.TestFromListConnector.test_connect_with_out_of_range_index) ... ok test_connect_with_valid_list (unittests.test_connectors_parallel.TestFromListConnector.test_connect_with_valid_list) ... ok test_with_plastic_synapse (unittests.test_connectors_parallel.TestFromListConnector.test_with_plastic_synapse) ... ok test_with_stdp_synapse (unittests.test_connectors_parallel.TestFromListConnector.test_with_stdp_synapse) ... ok test_connect_with_index_based_delays (unittests.test_connectors_parallel.TestIndexBasedProbabilityConnector.test_connect_with_index_based_delays) ... ok test_connect_with_index_based_weights (unittests.test_connectors_parallel.TestIndexBasedProbabilityConnector.test_connect_with_index_based_weights) ... ok test_connect_with_scalar_weights_and_delays (unittests.test_connectors_parallel.TestIndexBasedProbabilityConnector.test_connect_with_scalar_weights_and_delays) ... ok test_connect_with_random_weights (unittests.test_connectors_parallel.TestOneToOneConnector.test_connect_with_random_weights) ... ok test_connect_with_scalar_weights_and_delays (unittests.test_connectors_parallel.TestOneToOneConnector.test_connect_with_scalar_weights_and_delays) ... ok test_connect_with_array_weights (unittests.test_connectors_serial.TestAllToAllConnector.test_connect_with_array_weights) ... ok test_connect_with_delays_None (unittests.test_connectors_serial.TestAllToAllConnector.test_connect_with_delays_None) ... ok test_connect_with_delays_too_small (unittests.test_connectors_serial.TestAllToAllConnector.test_connect_with_delays_too_small) ... SKIP: skipping this tests until I figure out how I want to refactor checks test_connect_with_distance_dependent_weights (unittests.test_connectors_serial.TestAllToAllConnector.test_connect_with_distance_dependent_weights) ... ok test_connect_with_distance_dependent_weights_and_delays (unittests.test_connectors_serial.TestAllToAllConnector.test_connect_with_distance_dependent_weights_and_delays) ... ok test_connect_with_list_delays_too_small (unittests.test_connectors_serial.TestAllToAllConnector.test_connect_with_list_delays_too_small) ... SKIP: skipping this tests until I figure out how I want to refactor checks test_connect_with_random_weights_parallel_safe (unittests.test_connectors_serial.TestAllToAllConnector.test_connect_with_random_weights_parallel_safe) ... ok test_connect_with_scalar_weights_and_delays (unittests.test_connectors_serial.TestAllToAllConnector.test_connect_with_scalar_weights_and_delays) ... ok test_connect_with_random_weights_parallel_safe (unittests.test_connectors_serial.TestArrayConnector.test_connect_with_random_weights_parallel_safe) ... ok test_connect_with_scalar_weights_and_delays (unittests.test_connectors_serial.TestArrayConnector.test_connect_with_scalar_weights_and_delays) ... ok test_connect (unittests.test_connectors_serial.TestCloneConnector.test_connect) ... ok test_connect_with_pre_post_mismatch (unittests.test_connectors_serial.TestCloneConnector.test_connect_with_pre_post_mismatch) ... ok test_connect_with_default_args (unittests.test_connectors_serial.TestDistanceDependentProbabilityConnector.test_connect_with_default_args) ... ok test_no_replacement_no_self_connections (unittests.test_connectors_serial.TestFixedNumberPreConnector.test_no_replacement_no_self_connections) ... ok test_no_replacement_parallel_unsafe (unittests.test_connectors_serial.TestFixedNumberPreConnector.test_no_replacement_parallel_unsafe) ... ok test_with_n_larger_than_population_size (unittests.test_connectors_serial.TestFixedNumberPreConnector.test_with_n_larger_than_population_size) ... ok test_with_n_larger_than_population_size_no_self_connections (unittests.test_connectors_serial.TestFixedNumberPreConnector.test_with_n_larger_than_population_size_no_self_connections) ... ok test_with_n_smaller_than_population_size (unittests.test_connectors_serial.TestFixedNumberPreConnector.test_with_n_smaller_than_population_size) ... ok test_with_replacement (unittests.test_connectors_serial.TestFixedNumberPreConnector.test_with_replacement) ... ok test_with_replacement_no_self_connections (unittests.test_connectors_serial.TestFixedNumberPreConnector.test_with_replacement_no_self_connections) ... ok test_with_replacement_parallel_unsafe (unittests.test_connectors_serial.TestFixedNumberPreConnector.test_with_replacement_parallel_unsafe) ... ok test_with_replacement_with_neuron_0_connecting_neuron_0 (unittests.test_connectors_serial.TestFixedNumberPreConnector.test_with_replacement_with_neuron_0_connecting_neuron_0) ... ok test_with_replacement_with_variable_n (unittests.test_connectors_serial.TestFixedNumberPreConnector.test_with_replacement_with_variable_n) ... ok test_connect_weight_function_and_one_post_synaptic_neuron_not_connected (unittests.test_connectors_serial.TestFixedProbabilityConnector.test_connect_weight_function_and_one_post_synaptic_neuron_not_connected) ... ok test_connect_with_default_args (unittests.test_connectors_serial.TestFixedProbabilityConnector.test_connect_with_default_args) ... ok test_connect_with_default_args_again (unittests.test_connectors_serial.TestFixedProbabilityConnector.test_connect_with_default_args_again) ... ok test_connect_with_probability_one (unittests.test_connectors_serial.TestFixedProbabilityConnector.test_connect_with_probability_one) ... ok test_connect_with_random_delays_parallel_safe (unittests.test_connectors_serial.TestFixedProbabilityConnector.test_connect_with_random_delays_parallel_safe) ... ok test_connect_with_weight_function (unittests.test_connectors_serial.TestFixedProbabilityConnector.test_connect_with_weight_function) ... ok test_1 (unittests.test_connectors_serial.TestFixedTotalNumberConnector.test_1) ... ok test_connect_with_standard_text_file_not_distributed (unittests.test_connectors_serial.TestFromFileConnector.test_connect_with_standard_text_file_not_distributed) ... ok test_with_plastic_synapses_not_distributed (unittests.test_connectors_serial.TestFromFileConnector.test_with_plastic_synapses_not_distributed) ... ok test_connect_unique_connection_neuron_0_to_neuron_0 (unittests.test_connectors_serial.TestFromListConnector.test_connect_unique_connection_neuron_0_to_neuron_0) ... ok test_connect_with_empty_list (unittests.test_connectors_serial.TestFromListConnector.test_connect_with_empty_list) ... ok test_connect_with_out_of_range_index (unittests.test_connectors_serial.TestFromListConnector.test_connect_with_out_of_range_index) ... ok test_connect_with_valid_list (unittests.test_connectors_serial.TestFromListConnector.test_connect_with_valid_list) ... ok test_with_plastic_synapse (unittests.test_connectors_serial.TestFromListConnector.test_with_plastic_synapse) ... ok test_connect_with_index_based_delays (unittests.test_connectors_serial.TestIndexBasedProbabilityConnector.test_connect_with_index_based_delays) ... ok test_connect_with_index_based_weights (unittests.test_connectors_serial.TestIndexBasedProbabilityConnector.test_connect_with_index_based_weights) ... ok test_connect_with_scalar_weights_and_delays (unittests.test_connectors_serial.TestIndexBasedProbabilityConnector.test_connect_with_scalar_weights_and_delays) ... ok test_connect_with_random_weights (unittests.test_connectors_serial.TestOneToOneConnector.test_connect_with_random_weights) ... ok test_connect_with_scalar_weights_and_delays (unittests.test_connectors_serial.TestOneToOneConnector.test_connect_with_scalar_weights_and_delays) ... ok unittests.test_core.test_is_list_like_with_tuple ... ok unittests.test_core.test_is_list_like_with_list ... ok unittests.test_core.test_is_list_like_with_iterator ... ok unittests.test_core.test_is_list_like_with_set ... ok unittests.test_core.test_is_list_like_with_numpy_array ... ok unittests.test_core.test_is_list_like_with_string ... ok test_CheetahTE_get_template_from_file (unittests.test_descriptions.DescriptionTest.test_CheetahTE_get_template_from_file) ... ok test_CheetahTE_render (unittests.test_descriptions.DescriptionTest.test_CheetahTE_render) ... ok test_Jinja2TE_get_template_from_file (unittests.test_descriptions.DescriptionTest.test_Jinja2TE_get_template_from_file) ... ok test_Jinja2TE_render (unittests.test_descriptions.DescriptionTest.test_Jinja2TE_render) ... ok test_StringTE_get_template (unittests.test_descriptions.DescriptionTest.test_StringTE_get_template) ... ok test_StringTE_get_template_from_file (unittests.test_descriptions.DescriptionTest.test_StringTE_get_template_from_file) ... ok test_StringTE_render (unittests.test_descriptions.DescriptionTest.test_StringTE_render) ... ok test_get_default_template_engine (unittests.test_descriptions.DescriptionTest.test_get_default_template_engine) ... ok test_render_with_no_template (unittests.test_descriptions.DescriptionTest.test_render_with_no_template) ... ok test_render_with_template (unittests.test_descriptions.DescriptionTest.test_render_with_template) ... ok unittests.test_files.test__savetxt ... ok unittests.test_files.test_create_BaseFile ... ok unittests.test_files.test_del ... ok unittests.test_files.test_close ... ok unittests.test_files.test_StandardTextFile_read ... ok unittests.test_files.test_PickleFile ... ok unittests.test_files.test_HDF5ArrayFile ... ok unittests.test_idmixin.Test_IDMixin.test_celltype_property ... ok unittests.test_idmixin.Test_IDMixin.test_get_initial_value ... ok unittests.test_idmixin.Test_IDMixin.test_getattr_with_nonparameter_attr ... ok unittests.test_idmixin.Test_IDMixin.test_getattr_with_parent_not_set ... ok unittests.test_idmixin.Test_IDMixin.test_inject ... ok unittests.test_idmixin.Test_IDMixin.test_is_standard_cell ... ok unittests.test_idmixin.Test_IDMixin.test_local_property ... ok unittests.test_idmixin.Test_IDMixin.test_position_property ... ok unittests.test_idmixin.Test_IDMixin.test_set_initial_value ... ok unittests.test_lowlevelapi.test_build_create ... ok unittests.test_lowlevelapi.test_build_connect ... ok unittests.test_lowlevelapi.test_set ... ok unittests.test_lowlevelapi.test_build_record ... ok unittests.test_lowlevelapi.test_build_record_with_assembly ... ok test_list_standard_models (unittests.test_nest.TestFunctions.test_list_standard_models) ... SKIP: Requires NEST test_run_0 (unittests.test_nest.TestFunctions.test_run_0) ... SKIP: Requires NEST test_setup (unittests.test_nest.TestFunctions.test_setup) ... SKIP: Requires NEST test__get_parameters (unittests.test_nest.TestPopulation.test__get_parameters) ... SKIP: Requires NEST test_create_native (unittests.test_nest.TestPopulation.test_create_native) ... SKIP: Requires NEST test_set_parameters (unittests.test_nest.TestPopulation.test_set_parameters) ... SKIP: Requires NEST test_set_parameters_scalar (unittests.test_nest.TestPopulation.test_set_parameters_scalar) ... SKIP: Requires NEST test_set_parameters_singular (unittests.test_nest.TestPopulation.test_set_parameters_singular) ... SKIP: Requires NEST test_create_simple (unittests.test_nest.TestProjection.test_create_simple) ... SKIP: Requires NEST test_create_with_homogeneous_common_properties (unittests.test_nest.TestProjection.test_create_with_homogeneous_common_properties) ... SKIP: Requires NEST Native synapse with array-like parameters and CommonProperties. ... SKIP: Requires NEST test_create_with_synapse_dynamics (unittests.test_nest.TestProjection.test_create_with_synapse_dynamics) ... SKIP: Requires NEST test_inhibitory_weight (unittests.test_nest.TestProjection.test_inhibitory_weight) ... SKIP: Requires NEST test_set_array (unittests.test_nest.TestProjection.test_set_array) ... SKIP: Requires NEST test_single_postsynaptic_neuron (unittests.test_nest.TestProjection.test_single_postsynaptic_neuron) ... SKIP: Requires NEST test_single_presynaptic_and_single_postsynaptic_neuron (unittests.test_nest.TestProjection.test_single_presynaptic_and_single_postsynaptic_neuron) ... SKIP: Requires NEST test_single_presynaptic_neuron (unittests.test_nest.TestProjection.test_single_presynaptic_neuron) ... SKIP: Requires NEST cf https://github.com/NeuralEnsemble/PyNN/issues/423 ... SKIP: Requires NEST test_columnwise_iteration (unittests.test_parameters.ParameterSpaceTest.test_columnwise_iteration) ... ok test_columnwise_iteration_single_column (unittests.test_parameters.ParameterSpaceTest.test_columnwise_iteration_single_column) ... ok test_create_with_array_of_sequences (unittests.test_parameters.ParameterSpaceTest.test_create_with_array_of_sequences) ... ok test_create_with_list_of_lists (unittests.test_parameters.ParameterSpaceTest.test_create_with_list_of_lists) ... ok test_create_with_list_of_sequences (unittests.test_parameters.ParameterSpaceTest.test_create_with_list_of_sequences) ... ok test_create_with_sequence (unittests.test_parameters.ParameterSpaceTest.test_create_with_sequence) ... ok test_create_with_tuple (unittests.test_parameters.ParameterSpaceTest.test_create_with_tuple) ... ok test_evaluate (unittests.test_parameters.ParameterSpaceTest.test_evaluate) ... ok test_evaluate_with_mask (unittests.test_parameters.ParameterSpaceTest.test_evaluate_with_mask) ... ok test_evaluate_with_mask_2D (unittests.test_parameters.ParameterSpaceTest.test_evaluate_with_mask_2D) ... ok test_iteration (unittests.test_parameters.ParameterSpaceTest.test_iteration) ... ok test_iteration_items (unittests.test_parameters.ParameterSpaceTest.test_iteration_items) ... ok unittests.test_parameters.test_create_with_int ... ok unittests.test_parameters.test_create_with_float ... ok unittests.test_parameters.test_create_with_list ... ok unittests.test_parameters.test_create_with_array ... ok unittests.test_parameters.test_create_inconsistent ... ok unittests.test_parameters.test_create_with_invalid_string ... ok unittests.test_parameters.test_setitem_nonexpanded_same_value ... ok unittests.test_parameters.test_setitem_invalid_value ... ok unittests.test_parameters.test_setitem_nonexpanded_different_value ... ok unittests.test_parameters.test_columnwise_iteration_with_flat_array ... ok unittests.test_parameters.test_columnwise_iteration_with_structured_array ... ok unittests.test_parameters.test_columnwise_iteration_with_random_array_parallel_safe_no_mask ... ok unittests.test_parameters.test_columnwise_iteration_with_function ... ok unittests.test_parameters.test_columnwise_iteration_with_flat_array_and_mask ... ok unittests.test_parameters.test_columnwise_iteration_with_structured_array_and_mask ... ok unittests.test_parameters.test_columnwise_iteration_with_random_array_parallel_safe_with_mask ... ok unittests.test_parameters.test_evaluate_with_flat_array ... ok unittests.test_parameters.test_evaluate_with_structured_array ... ok unittests.test_parameters.test_evaluate_with_functional_array ... ok unittests.test_parameters.test_iadd_with_flat_array ... ok unittests.test_parameters.test_add_with_flat_array ... ok unittests.test_parameters.test_lt_with_flat_array ... ok unittests.test_parameters.test_lt_with_structured_array ... ok unittests.test_parameters.test_structured_array_lt_array ... ok unittests.test_parameters.test_multiple_operations_with_structured_array ... ok unittests.test_parameters.test_apply_function_to_constant_array ... ok unittests.test_parameters.test_apply_function_to_structured_array ... ok unittests.test_parameters.test_apply_function_to_functional_array ... ok unittests.test_parameters.test_add_two_constant_arrays ... ok unittests.test_parameters.test_add_incommensurate_arrays ... ok unittests.test_parameters.test_getitem_from_constant_array ... ok test___add__three (unittests.test_population.PopulationTest.test___add__three) ... ok test___add__two (unittests.test_population.PopulationTest.test___add__two) ... ok test__getitem__int (unittests.test_population.PopulationTest.test__getitem__int) ... ok test__getitem__invalid (unittests.test_population.PopulationTest.test__getitem__invalid) ... ok test__getitem__list (unittests.test_population.PopulationTest.test__getitem__list) ... ok test__getitem__slice (unittests.test_population.PopulationTest.test__getitem__slice) ... ok test__getitem__tuple (unittests.test_population.PopulationTest.test__getitem__tuple) ... ok test__len__ (unittests.test_population.PopulationTest.test__len__) ... ok test_can_record (unittests.test_population.PopulationTest.test_can_record) ... ok test_create_with_empty_spike_source_array (unittests.test_population.PopulationTest.test_create_with_empty_spike_source_array) ... ok test_create_with_implicit_grid (unittests.test_population.PopulationTest.test_create_with_implicit_grid) ... ok test_create_with_parameters (unittests.test_population.PopulationTest.test_create_with_parameters) ... ok test_create_with_standard_cell_simple (unittests.test_population.PopulationTest.test_create_with_standard_cell_simple) ... ok test_describe (unittests.test_population.PopulationTest.test_describe) ... ok test_getSpikes (unittests.test_population.PopulationTest.test_getSpikes) ... ok test_get_data_with_gather (unittests.test_population.PopulationTest.test_get_data_with_gather) ... ok test_get_gsyn (unittests.test_population.PopulationTest.test_get_gsyn) ... ok test_get_multiple_homogeneous_params_with_gather (unittests.test_population.PopulationTest.test_get_multiple_homogeneous_params_with_gather) ... ok test_get_multiple_inhomogeneous_params_with_gather (unittests.test_population.PopulationTest.test_get_multiple_inhomogeneous_params_with_gather) ... ok test_get_multiple_params_no_gather (unittests.test_population.PopulationTest.test_get_multiple_params_no_gather) ... ok test_get_positions (unittests.test_population.PopulationTest.test_get_positions) ... ok test_get_sequence_param (unittests.test_population.PopulationTest.test_get_sequence_param) ... ok test_get_single_param_with_gather (unittests.test_population.PopulationTest.test_get_single_param_with_gather) ... ok test_get_spike_counts (unittests.test_population.PopulationTest.test_get_spike_counts) ... ok test_get_spikes_with_gather (unittests.test_population.PopulationTest.test_get_spikes_with_gather) ... ok test_get_v (unittests.test_population.PopulationTest.test_get_v) ... ok test_id_to_index (unittests.test_population.PopulationTest.test_id_to_index) ... ok test_id_to_index_with_array (unittests.test_population.PopulationTest.test_id_to_index_with_array) ... ok test_id_to_index_with_invalid_id (unittests.test_population.PopulationTest.test_id_to_index_with_invalid_id) ... ok test_id_to_index_with_invalid_ids (unittests.test_population.PopulationTest.test_id_to_index_with_invalid_ids) ... ok test_id_to_index_with_populationview (unittests.test_population.PopulationTest.test_id_to_index_with_populationview) ... ok test_initialize (unittests.test_population.PopulationTest.test_initialize) ... ok test_inject (unittests.test_population.PopulationTest.test_inject) ... ok test_inject_into_invalid_celltype (unittests.test_population.PopulationTest.test_inject_into_invalid_celltype) ... ok test_iter (unittests.test_population.PopulationTest.test_iter) ... ok test_meanSpikeCount (unittests.test_population.PopulationTest.test_meanSpikeCount) ... ok test_mean_spike_count (unittests.test_population.PopulationTest.test_mean_spike_count) ... ok test_nearest (unittests.test_population.PopulationTest.test_nearest) ... ok test_position_generator (unittests.test_population.PopulationTest.test_position_generator) ... ok test_printSpikes (unittests.test_population.PopulationTest.test_printSpikes) ... ok test_print_gsyn (unittests.test_population.PopulationTest.test_print_gsyn) ... ok test_print_v (unittests.test_population.PopulationTest.test_print_v) ... ok test_record_gsyn (unittests.test_population.PopulationTest.test_record_gsyn) ... ok test_record_invalid_variable (unittests.test_population.PopulationTest.test_record_invalid_variable) ... ok test_record_v (unittests.test_population.PopulationTest.test_record_v) ... ok test_record_with_multiple_variables (unittests.test_population.PopulationTest.test_record_with_multiple_variables) ... ok test_record_with_single_variable (unittests.test_population.PopulationTest.test_record_with_single_variable) ... ok test_record_with_v_and_spikes (unittests.test_population.PopulationTest.test_record_with_v_and_spikes) ... ok test_rset (unittests.test_population.PopulationTest.test_rset) ... ok test_sample (unittests.test_population.PopulationTest.test_sample) ... ok test_save_positions (unittests.test_population.PopulationTest.test_save_positions) ... ok test_set (unittests.test_population.PopulationTest.test_set) ... ok test_set_array (unittests.test_population.PopulationTest.test_set_array) ... ok test_set_invalid_name (unittests.test_population.PopulationTest.test_set_invalid_name) ... ok test_set_invalid_type (unittests.test_population.PopulationTest.test_set_invalid_type) ... ok test_set_positions (unittests.test_population.PopulationTest.test_set_positions) ... ok test_set_random_distribution_parallel_safe (unittests.test_population.PopulationTest.test_set_random_distribution_parallel_safe) ... ok test_set_random_distribution_parallel_unsafe (unittests.test_population.PopulationTest.test_set_random_distribution_parallel_unsafe) ... ok test_set_sequence (unittests.test_population.PopulationTest.test_set_sequence) ... ok test_set_structure (unittests.test_population.PopulationTest.test_set_structure) ... ok test_tset (unittests.test_population.PopulationTest.test_tset) ... ok test___add__three (unittests.test_populationview.PopulationViewTest.test___add__three) ... ok test___add__two (unittests.test_populationview.PopulationViewTest.test___add__two) ... ok test__getitem__int (unittests.test_populationview.PopulationViewTest.test__getitem__int) ... ok test__getitem__invalid (unittests.test_populationview.PopulationViewTest.test__getitem__invalid) ... ok test__getitem__list (unittests.test_populationview.PopulationViewTest.test__getitem__list) ... ok test__getitem__slice (unittests.test_populationview.PopulationViewTest.test__getitem__slice) ... ok test__getitem__tuple (unittests.test_populationview.PopulationViewTest.test__getitem__tuple) ... ok test__len__ (unittests.test_populationview.PopulationViewTest.test__len__) ... ok test_can_record (unittests.test_populationview.PopulationViewTest.test_can_record) ... ok test_create_with_boolean_array_selector (unittests.test_populationview.PopulationViewTest.test_create_with_boolean_array_selector) ... ok test_create_with_index_array_selector (unittests.test_populationview.PopulationViewTest.test_create_with_index_array_selector) ... ok test_create_with_slice_selector (unittests.test_populationview.PopulationViewTest.test_create_with_slice_selector) ... ok test_describe (unittests.test_populationview.PopulationViewTest.test_describe) ... ok test_get_data_with_gather (unittests.test_populationview.PopulationViewTest.test_get_data_with_gather) ... ok test_get_multiple_homogeneous_params_with_gather (unittests.test_populationview.PopulationViewTest.test_get_multiple_homogeneous_params_with_gather) ... ok test_get_multiple_inhomogeneous_params_with_gather (unittests.test_populationview.PopulationViewTest.test_get_multiple_inhomogeneous_params_with_gather) ... ok test_get_positions (unittests.test_populationview.PopulationViewTest.test_get_positions) ... ok test_get_sequence_param (unittests.test_populationview.PopulationViewTest.test_get_sequence_param) ... ok test_get_single_homogeneous_param_with_gather (unittests.test_populationview.PopulationViewTest.test_get_single_homogeneous_param_with_gather) ... ok test_get_spike_counts (unittests.test_populationview.PopulationViewTest.test_get_spike_counts) ... ok test_id_to_index (unittests.test_populationview.PopulationViewTest.test_id_to_index) ... ok test_id_to_index_with_array (unittests.test_populationview.PopulationViewTest.test_id_to_index_with_array) ... ok test_id_to_index_with_invalid_id (unittests.test_populationview.PopulationViewTest.test_id_to_index_with_invalid_id) ... ok test_index_from_parent_index (unittests.test_populationview.PopulationViewTest.test_index_from_parent_index) ... ok test_index_in_grandparent (unittests.test_populationview.PopulationViewTest.test_index_in_grandparent) ... ok test_inject (unittests.test_populationview.PopulationViewTest.test_inject) ... ok test_inject_into_invalid_celltype (unittests.test_populationview.PopulationViewTest.test_inject_into_invalid_celltype) ... ok test_iter (unittests.test_populationview.PopulationViewTest.test_iter) ... ok test_mean_spike_count (unittests.test_populationview.PopulationViewTest.test_mean_spike_count) ... ok test_nearest (unittests.test_populationview.PopulationViewTest.test_nearest) ... ok test_position_generator (unittests.test_populationview.PopulationViewTest.test_position_generator) ... ok test_record_gsyn (unittests.test_populationview.PopulationViewTest.test_record_gsyn) ... ok test_record_invalid_variable (unittests.test_populationview.PopulationViewTest.test_record_invalid_variable) ... ok test_record_v (unittests.test_populationview.PopulationViewTest.test_record_v) ... ok test_record_with_multiple_variables (unittests.test_populationview.PopulationViewTest.test_record_with_multiple_variables) ... ok test_record_with_single_variable (unittests.test_populationview.PopulationViewTest.test_record_with_single_variable) ... ok test_record_with_v_spikes (unittests.test_populationview.PopulationViewTest.test_record_with_v_spikes) ... ok test_rset (unittests.test_populationview.PopulationViewTest.test_rset) ... ok test_sample (unittests.test_populationview.PopulationViewTest.test_sample) ... ok test_save_positions (unittests.test_populationview.PopulationViewTest.test_save_positions) ... ok test_set (unittests.test_populationview.PopulationViewTest.test_set) ... ok test_set_array (unittests.test_populationview.PopulationViewTest.test_set_array) ... ok test_set_invalid_name (unittests.test_populationview.PopulationViewTest.test_set_invalid_name) ... ok test_set_invalid_type (unittests.test_populationview.PopulationViewTest.test_set_invalid_type) ... ok test_set_sequence (unittests.test_populationview.PopulationViewTest.test_set_sequence) ... ok test_set_structure (unittests.test_populationview.PopulationViewTest.test_set_structure) ... ok test_structure_property (unittests.test_populationview.PopulationViewTest.test_structure_property) ... ok test_tset (unittests.test_populationview.PopulationViewTest.test_tset) ... ok test_check_weights_with_array (unittests.test_projection.CheckTest.test_check_weights_with_array) ... ok test_check_weights_with_invalid_value (unittests.test_projection.CheckTest.test_check_weights_with_invalid_value) ... ok test_check_weights_with_scalar (unittests.test_projection.CheckTest.test_check_weights_with_scalar) ... ok test_create_simple (unittests.test_projection.ProjectionTest.test_create_simple) ... ok test_create_with_default_receptor_type (unittests.test_projection.ProjectionTest.test_create_with_default_receptor_type) ... ok test_create_with_fast_synapse_dynamics (unittests.test_projection.ProjectionTest.test_create_with_fast_synapse_dynamics) ... ok test_create_with_homogeneous_postsynaptic_assembly (unittests.test_projection.ProjectionTest.test_create_with_homogeneous_postsynaptic_assembly) ... ok test_create_with_inhomogeneous_postsynaptic_assembly (unittests.test_projection.ProjectionTest.test_create_with_inhomogeneous_postsynaptic_assembly) ... ok test_create_with_invalid_type (unittests.test_projection.ProjectionTest.test_create_with_invalid_type) ... ok test_create_with_presynaptic_assembly (unittests.test_projection.ProjectionTest.test_create_with_presynaptic_assembly) ... ok test_describe (unittests.test_projection.ProjectionTest.test_describe) ... ok test_get_plasticity_attribute_as_list (unittests.test_projection.ProjectionTest.test_get_plasticity_attribute_as_list) ... ok test_get_weights_as_array (unittests.test_projection.ProjectionTest.test_get_weights_as_array) ... ok test_get_weights_as_array_with_multapses (unittests.test_projection.ProjectionTest.test_get_weights_as_array_with_multapses) ... ok test_get_weights_as_array_with_multapses_min (unittests.test_projection.ProjectionTest.test_get_weights_as_array_with_multapses_min) ... ok test_get_weights_as_list (unittests.test_projection.ProjectionTest.test_get_weights_as_list) ... ok test_get_weights_as_list_no_address (unittests.test_projection.ProjectionTest.test_get_weights_as_list_no_address) ... ok test_parameter_StaticSynapse_random_distribution (unittests.test_projection.ProjectionTest.test_parameter_StaticSynapse_random_distribution) ... ok test_parameter_TsodyksMarkramSynapse_random_distribution (unittests.test_projection.ProjectionTest.test_parameter_TsodyksMarkramSynapse_random_distribution) ... ok test_save_connections_with_gather (unittests.test_projection.ProjectionTest.test_save_connections_with_gather) ... ok test_size_with_gather (unittests.test_projection.ProjectionTest.test_size_with_gather) ... ok test_synapse_with_lambda_parameter (unittests.test_projection.ProjectionTest.test_synapse_with_lambda_parameter) ... ok test_weightHistogram (unittests.test_projection.ProjectionTest.test_weightHistogram) ... ok unittests.test_recording.test_Recorder_create ... ok unittests.test_recording.test_Recorder_invalid_variable ... ok unittests.test_recording.test_record ... ok unittests.test_recording.test_filter_recorded ... ok unittests.test_recording.test_get ... ERROR unittests.test_recording.test_metadata_property ... ok test_callbacks (unittests.test_simulation_control.TestSimulationControl.test_callbacks) ... ok test_current_time (unittests.test_simulation_control.TestSimulationControl.test_current_time) ... ok test_current_time_two_runs (unittests.test_simulation_control.TestSimulationControl.test_current_time_two_runs) ... ok test_end (unittests.test_simulation_control.TestSimulationControl.test_end) ... ok test_max_delay (unittests.test_simulation_control.TestSimulationControl.test_max_delay) ... ok test_min_delay (unittests.test_simulation_control.TestSimulationControl.test_min_delay) ... ok test_num_processes (unittests.test_simulation_control.TestSimulationControl.test_num_processes) ... SKIP: test requires mpi4py test_rank (unittests.test_simulation_control.TestSimulationControl.test_rank) ... SKIP: test requires mpi4py test_reset (unittests.test_simulation_control.TestSimulationControl.test_reset) ... ok test_run (unittests.test_simulation_control.TestSimulationControl.test_run) ... ok test_run_twice (unittests.test_simulation_control.TestSimulationControl.test_run_twice) ... ok test_setup (unittests.test_simulation_control.TestSimulationControl.test_setup) ... ok test_time_step (unittests.test_simulation_control.TestSimulationControl.test_time_step) ... ok unittests.test_space.Grid2D_Test.test_calculate_size ... ok unittests.test_space.Grid2D_Test.test_generate_positions ... ok unittests.test_space.Grid3D_Test.test_calculate_size ... ok unittests.test_space.Grid3D_Test.test_generate_positions ... ok test__eq__ (unittests.test_space.LineTest.test__eq__) ... ok test_generate_positions (unittests.test_space.LineTest.test_generate_positions) ... ok test_generate_positions_default_parameters (unittests.test_space.LineTest.test_generate_positions_default_parameters) ... ok test_get_parameters (unittests.test_space.LineTest.test_get_parameters) ... ok test_cylindrical_space (unittests.test_space.SpaceTest.test_cylindrical_space) ... ok test_generator_for_infinite_space_with_3D_distances (unittests.test_space.SpaceTest.test_generator_for_infinite_space_with_3D_distances) ... ok test_infinite_space_with_3D_distances (unittests.test_space.SpaceTest.test_infinite_space_with_3D_distances) ... ok test_infinite_space_with_collapsed_axes (unittests.test_space.SpaceTest.test_infinite_space_with_collapsed_axes) ... ok test_infinite_space_with_scale_and_offset (unittests.test_space.SpaceTest.test_infinite_space_with_scale_and_offset) ... ok unittests.test_space.TestCuboid.test_sample ... ok unittests.test_space.TestRandomStructure.test_generate_positions ... ok unittests.test_space.TestSphere.test__create ... ok unittests.test_space.TestSphere.test_sample ... ok unittests.test_space.test_distance ... ok unittests.test_standardmodels.test_build_translations ... ok unittests.test_standardmodels.test_has_parameter ... ok unittests.test_standardmodels.test_get_parameter_names ... ok Instantiating a StandardModelType should set self.parameter_space to a ... ok unittests.test_standardmodels.test_translate ... ok unittests.test_standardmodels.test_translate_with_invalid_transformation ... ok unittests.test_standardmodels.test_translate_with_divide_by_zero_error ... ok unittests.test_standardmodels.test_reverse_translate ... ok unittests.test_standardmodels.test_reverse_translate_with_invalid_transformation ... ok unittests.test_standardmodels.test_simple_parameters ... ok unittests.test_standardmodels.test_scaled_parameters ... ok unittests.test_standardmodels.test_computed_parameters ... ok unittests.test_standardmodels.test_describe ... ok unittests.test_standardmodels.test_describe_synapse_type ... ok unittests.test_standardmodels.test_STDPMechanism_create ... ok unittests.test_standardmodels.test_STDPMechanism_create_invalid_types ... ok test_get_script_args (unittests.test_utility_functions.GetArgTests.test_get_script_args) ... ok test_notify (unittests.test_utility_functions.NotifyTests.test_notify) ... ok test_dynamic (unittests.test_utility_functions.ProgressBarTest.test_dynamic) ... ok test_fixed (unittests.test_utility_functions.ProgressBarTest.test_fixed) ... ok test_diff (unittests.test_utility_functions.TimerTest.test_diff) ... ok test_timer (unittests.test_utility_functions.TimerTest.test_timer) ... ok ====================================================================== ERROR: test_get_data_with_gather (unittests.test_assembly.AssemblyTest.test_get_data_with_gather) ---------------------------------------------------------------------- Traceback (most recent call last): File "/build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/test/unittests/test_assembly.py", line 358, in test_get_data_with_gather data = a.get_data(gather=True) ^^^^^^^^^^^^^^^^^^^^^^^ File "/build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/common/populations.py", line 1412, in get_data merged_block.merge(block) File "/usr/lib/python3/dist-packages/neo/core/container.py", line 525, in merge lookup[obj.name].merge(obj) File "/usr/lib/python3/dist-packages/neo/core/container.py", line 542, in merge newobj = getattr(self, container)[ind].merge(obj) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/neo/core/basesignal.py", line 243, in merge raise MergeError("Cannot merge these two signals as they belong to different segments.") neo.core.baseneo.MergeError: Cannot merge these two signals as they belong to different segments. -------------------- >> begin captured logging << -------------------- PyNN: DEBUG: In Population 'population36', initialising v to -65.0 PyNN: DEBUG: In Population 'population36', initialising gsyn_exc to 0.0 PyNN: DEBUG: In Population 'population36', initialising gsyn_inh to 0.0 PyNN: DEBUG: In Population 'population37', initialising v to -65.0 PyNN: DEBUG: In Population 'population37', initialising gsyn_exc to 0.0 PyNN: DEBUG: In Population 'population37', initialising gsyn_inh to 0.0 PyNN: DEBUG: In Population 'population38', initialising v to -70.6 PyNN: DEBUG: In Population 'population38', initialising w to 0.0 PyNN: DEBUG: In Population 'population38', initialising gsyn_exc to 0.0 PyNN: DEBUG: In Population 'population38', initialising gsyn_inh to 0.0 PyNN: DEBUG: population38.record('v') PyNN: DEBUG: Recorder.record(<3 cells>) PyNN: DEBUG: population36.record('v') PyNN: DEBUG: Recorder.record(<11 cells>) PyNN: DEBUG: population37.record('v') PyNN: DEBUG: Recorder.record(<6 cells>) PyNN: DEBUG: 0 **** ids=[59 60 61], channels=[0 1 2] PyNN: DEBUG: Adding to cache PyNN: DEBUG: 0 **** ids=[42 43 44 45 46 47 48 49 50 51 52], channels=[ 0 1 2 3 4 5 6 7 8 9 10] PyNN: DEBUG: Adding to cache PyNN: DEBUG: 0 **** ids=[53 54 55 56 57 58], channels=[0 1 2 3 4 5] PyNN: DEBUG: Adding to cache PyNN: DEBUG: population38.record('spikes') PyNN: DEBUG: Recorder.record(<3 cells>) PyNN: DEBUG: population36.record('spikes') PyNN: DEBUG: Recorder.record(<11 cells>) PyNN: DEBUG: population37.record('spikes') PyNN: DEBUG: Recorder.record(<6 cells>) PyNN: DEBUG: population38.record('w') PyNN: DEBUG: Recorder.record(<3 cells>) PyNN: DEBUG: 0 **** ids=[59 60 61], channels=[0 1 2] PyNN: DEBUG: 0 **** ids=[59 60 61], channels=[0 1 2] PyNN: DEBUG: 0 **** ids=[42 43 44 45 46 47 48 49 50 51 52], channels=[ 0 1 2 3 4 5 6 7 8 9 10] PyNN: DEBUG: 0 **** ids=[53 54 55 56 57 58], channels=[0 1 2 3 4 5] PyNN: DEBUG: 0: population38 PyNN: DEBUG: 0: segment000 PyNN: DEBUG: (258, 3) v PyNN: DEBUG: 1: segment001 PyNN: DEBUG: (146, 3) v PyNN: DEBUG: (146, 3) w PyNN: DEBUG: 1: population36 PyNN: DEBUG: 0: segment000 PyNN: DEBUG: (258, 11) v PyNN: DEBUG: 1: segment001 PyNN: DEBUG: (146, 11) v PyNN: DEBUG: 2: population37 PyNN: DEBUG: 0: segment000 PyNN: DEBUG: (258, 6) v PyNN: DEBUG: 1: segment001 PyNN: DEBUG: (146, 6) v --------------------- >> end captured logging << --------------------- ====================================================================== ERROR: unittests.test_recording.test_get ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/test/unittests/test_recording.py", line 167, in test_get data = r.get('spikes') ^^^^^^^^^^^^^^^ File "/build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build/pyNN/recording/__init__.py", line 375, in get data.segments.append(self._get_current_segment( File "/usr/lib/python3/dist-packages/neo/core/objectlist.py", line 86, in append self._handle_append(obj) File "/usr/lib/python3/dist-packages/neo/core/objectlist.py", line 34, in _handle_append raise TypeError(f"Object is a {type(obj)}. It should be one of {self.allowed_contents}.") TypeError: Object is a . It should be one of (,). ---------------------------------------------------------------------- Ran 426 tests in 2.126s FAILED (SKIP=24, errors=2) E: pybuild pybuild:389: test: plugin distutils failed with: exit code=1: cd /build/reproducible-path/pynn-0.10.1/.pybuild/cpython3_3.11_pynn/build; python3.11 -m nose -v test dh_auto_test: error: pybuild --test --test-nose -i python{version} -p "3.12 3.11" returned exit code 13 make[1]: *** [debian/rules:18: override_dh_auto_test] Error 25 make[1]: Leaving directory '/build/reproducible-path/pynn-0.10.1' make: *** [debian/rules:8: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/117912 and its subdirectories Tue May 14 13:48:46 UTC 2024 W: No second build log, what happened?