Mon May 13 14:43:57 UTC 2024 I: starting to build plink1.9/trixie/i386 on jenkins on '2024-05-13 14:43' Mon May 13 14:43:57 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_8/27599/console.log Mon May 13 14:43:57 UTC 2024 I: Downloading source for trixie/plink1.9=1.90~b7.2-231211-1 --2024-05-13 14:43:58-- http://deb.debian.org/debian/pool/main/p/plink1.9/plink1.9_1.90%7eb7.2-231211-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2180 (2.1K) [text/prs.lines.tag] Saving to: ‘plink1.9_1.90~b7.2-231211-1.dsc’ 0K .. 100% 258M=0s 2024-05-13 14:43:58 (258 MB/s) - ‘plink1.9_1.90~b7.2-231211-1.dsc’ saved [2180/2180] Mon May 13 14:43:58 UTC 2024 I: plink1.9_1.90~b7.2-231211-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: plink1.9 Binary: plink1.9 Architecture: any-amd64 any-i386 armel armhf mipsel Version: 1.90~b7.2-231211-1 Maintainer: Debian Med Packaging Team Uploaders: Dylan Aïssi Homepage: https://www.cog-genomics.org/plink/1.9/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/plink1-9 Vcs-Git: https://salsa.debian.org/med-team/plink1-9.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libblas-dev | libblas.so, liblapack-dev | liblapack.so, zlib1g-dev Package-List: plink1.9 deb science optional arch=any-amd64,any-i386,armel,armhf,mipsel Checksums-Sha1: 8ea5eb08b1a612fdbcdc2deb0371aa9082818b77 737164 plink1.9_1.90~b7.2-231211.orig.tar.xz 57e58e331a4f8ee59347bb2b4d1790f8b893e017 47240 plink1.9_1.90~b7.2-231211-1.debian.tar.xz Checksums-Sha256: 285a3051017bd4dfa1f9cebeb6ef88574653f10151018b19bb83bbc6ba0c62a6 737164 plink1.9_1.90~b7.2-231211.orig.tar.xz 1ef0273f406f9e954c500ae8ce82831d2daf8a0ea268b98a61e70a5ac75fb62d 47240 plink1.9_1.90~b7.2-231211-1.debian.tar.xz Files: ab04af5cce2b27acc1efb29a37e43906 737164 plink1.9_1.90~b7.2-231211.orig.tar.xz 72e3bf452eb669148581fb81991bc93c 47240 plink1.9_1.90~b7.2-231211-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWgEWMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHtEw/6AnCvAsmpLnisbQl0Utc+O0BwqVytASC1 S6z+DXp5bpwqI5tXvm9DBgKMxn8ryVUKqXbq+e11eECrQsIraH4m7K1qJ5jsW8rw qVsRYOwjCJVrnoTFPfc3l3dTd2/r9Ox2wH1+Obi268fToTSC9kYe5ozOmT7qlkCF APvsnrwe+2hq2UAGBy9pbc9WPZDrfYpYv648TnYB+mEwTswnXDdzIOEQoQc1U5AE X1PXNEVy8tzRia+Y9NVc7ak1ayjB0ffHL6JL1/sXCs6OtkGREmMGLfG9XAmcm02C 1urFQ2pZu2E7952Up5QAU9DKIXaWP/ifjhERamwVCQaMcqf8hlcYTzTup4puQCyn xLaMsyKAWBskDbAuzMh+IKDdA4pMNxUgvDZcm90+Vef/6IuHBeZWNpfPCnPMax71 6kLL+husYDnsNI7c4UrFs13DZU94K7WcBV91s/9CowgTWv65a/SKLqGz2ZU1njHI m2NxgKygwem1wQX/DIT35LlraQk4YX68SST+bY5ihQsxZZtOe6IeMlGzy9S0mhD4 KdcpvYM19ngJOmuW/hgaGv79P5iUpbnaC72Yel0CUcMUi6YwkliInSqdV3WGMmhA THdIRewge9AyRF8XMvoN8L0tm2kZgtvKVGKyLgDDOF/eqPC4QefkivEX+w+SWKOD bnXAhLGilnM= =h4YM -----END PGP SIGNATURE----- Mon May 13 14:43:58 UTC 2024 I: Checking whether the package is not for us Mon May 13 14:43:58 UTC 2024 I: Starting 1st build on remote node ionos16-i386.debian.net. Mon May 13 14:43:58 UTC 2024 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Mon May 13 14:45:51 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jun 15 09:07:02 -12 2025 I: pbuilder-time-stamp: 1750021622 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [plink1.9_1.90~b7.2-231211-1.dsc] I: copying [./plink1.9_1.90~b7.2-231211.orig.tar.xz] I: copying [./plink1.9_1.90~b7.2-231211-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Jan 11 16:03:47 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./plink1.9_1.90~b7.2-231211-1.dsc: no acceptable signature found dpkg-source: info: extracting plink1.9 in plink1.9-1.90~b7.2-231211 dpkg-source: info: unpacking plink1.9_1.90~b7.2-231211.orig.tar.xz dpkg-source: info: unpacking plink1.9_1.90~b7.2-231211-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_makefile.patch dpkg-source: info: applying blas.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/77155/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='fa99bdcecdcd448f8d6cac4e6742d927' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='77155' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.KJonkBAA/pbuilderrc_TUP3 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.KJonkBAA/b1 --logfile b1/build.log plink1.9_1.90~b7.2-231211-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos16-i386 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 14 18:01 /bin -> usr/bin I: user script /srv/workspace/pbuilder/77155/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libblas-dev | libblas.so, liblapack-dev | liblapack.so, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19684 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev | libblas.so; however: Package libblas-dev is not installed. Package libblas.so is not installed. pbuilder-satisfydepends-dummy depends on liblapack-dev | liblapack.so; however: Package liblapack-dev is not installed. Package liblapack.so is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} liblapack-dev{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 27.8 MB of archives. After unpacking 109 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3 [42.9 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-4 [1194 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40-8 [97.2 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.1-1 [1421 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-1+b1 [194 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b3 [727 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.0-3 [140 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 libblas-dev i386 3.12.0-3 [152 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14-20240330-1 [735 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.0-3 [2167 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 liblapack-dev i386 3.12.0-3 [4400 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg-3.1 [915 kB] Fetched 27.8 MB in 1s (51.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19684 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-4_i386.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40-8_i386.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.7-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-1_i386.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../22-libelf1t64_0.191-1+b1_i386.deb ... Unpacking libelf1t64:i386 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../24-libicu72_72.1-4+b1_i386.deb ... Unpacking libicu72:i386 (72.1-4+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b3_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_i386.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../30-libblas3_3.12.0-3_i386.deb ... Unpacking libblas3:i386 (3.12.0-3) ... Selecting previously unselected package libblas-dev:i386. Preparing to unpack .../31-libblas-dev_3.12.0-3_i386.deb ... Unpacking libblas-dev:i386 (3.12.0-3) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../32-libgfortran5_14-20240330-1_i386.deb ... Unpacking libgfortran5:i386 (14-20240330-1) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../33-liblapack3_3.12.0-3_i386.deb ... Unpacking liblapack3:i386 (3.12.0-3) ... Selecting previously unselected package liblapack-dev:i386. Preparing to unpack .../34-liblapack-dev_3.12.0-3_i386.deb ... Unpacking liblapack-dev:i386 (3.12.0-3) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../35-zlib1g-dev_1%3a1.3.dfsg-3.1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.3.dfsg-3.1) ... Setting up libpipeline1:i386 (1.5.7-2) ... Setting up libicu72:i386 (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:i386 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up autopoint (0.21-14) ... Setting up libgfortran5:i386 (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b3) ... Setting up libblas-dev:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblapack3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up liblapack-dev:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/plink1.9-1.90~b7.2-231211/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../plink1.9_1.90~b7.2-231211-1_source.changes dpkg-buildpackage: info: source package plink1.9 dpkg-buildpackage: info: source version 1.90~b7.2-231211-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.2-231211' dh_auto_clean make -j22 clean make[2]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.2-231211' rm -f plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o plink plinkw make[2]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.2-231211' rm -f plink1.9 rm -f plink1.9.1 make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.2-231211' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.2-231211' dh_auto_build make -j22 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.2-231211' g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink.c -o plink.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_assoc.c -o plink_assoc.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_calc.c -o plink_calc.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_cluster.c -o plink_cluster.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_cnv.c -o plink_cnv.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_common.c -o plink_common.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_data.c -o plink_data.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_dosage.c -o plink_dosage.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_family.c -o plink_family.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_filter.c -o plink_filter.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_glm.c -o plink_glm.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_help.c -o plink_help.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_homozyg.c -o plink_homozyg.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_lasso.c -o plink_lasso.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_ld.c -o plink_ld.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_matrix.c -o plink_matrix.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_misc.c -o plink_misc.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_perm.c -o plink_perm.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_rserve.c -o plink_rserve.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_set.c -o plink_set.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_stats.c -o plink_stats.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security SFMT.c -o SFMT.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security dcdflib.c -o dcdflib.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security pigz.c -o pigz.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security yarn.c -o yarn.o g++ -x c++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security Rconnection.cc -o Rconnection.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security hfile.c -o hfile.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security bgzf.c -o bgzf.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from plink_data.c:18: plink_data.c: In function 'int32_t ped_to_bed(char*, char*, char*, char*, uint32_t, uint64_t, int32_t, Chrom_info*)': plink_data.c:5832:24: warning: '%s' directive output may be truncated writing between 9 and 2147483645 bytes into a region of size 262122 [-Wformat-truncation=] 5832 | LOGERRPRINTFWW("Error: Failed to open %s. (--file expects a filename *prefix*; '.ped' and '.map' are automatically appended.)\n", mapname); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ plink_common.h:1001:59: note: in definition of macro 'LOGERRPRINTFWW' 1001 | #define LOGERRPRINTFWW(...) snprintf(g_logbuf, LOGBUFLEN, __VA_ARGS__); wordwrapb(0); logerrprintb(); | ^~~~~~~~~~~ plink_data.c:5832:47: note: format string is defined here 5832 | LOGERRPRINTFWW("Error: Failed to open %s. (--file expects a filename *prefix*; '.ped' and '.map' are automatically appended.)\n", mapname); | ^~ In file included from /usr/include/stdio.h:964, from plink_common.h:25: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'int32_t ped_to_bed(char*, char*, char*, char*, uint32_t, uint64_t, int32_t, Chrom_info*)' at plink_data.c:5832:2: /usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 118 and 2147483754 bytes into a destination of size 262144 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ plink_data.c: In function 'int32_t vcf_to_bed(char*, char*, char*, int32_t, uint64_t, char*, char, char, double, char*, double, double, uint32_t, Chrom_info*)': plink_data.c:8040:24: warning: '%s' directive output may be truncated writing between 5 and 2147483645 bytes into a region of size 262122 [-Wformat-truncation=] 8040 | LOGERRPRINTFWW("Error: Failed to open %s.\n", vcfname); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ plink_common.h:1001:59: note: in definition of macro 'LOGERRPRINTFWW' 1001 | #define LOGERRPRINTFWW(...) snprintf(g_logbuf, LOGBUFLEN, __VA_ARGS__); wordwrapb(0); logerrprintb(); | ^~~~~~~~~~~ plink_data.c:8040:47: note: format string is defined here 8040 | LOGERRPRINTFWW("Error: Failed to open %s.\n", vcfname); | ^~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'int32_t vcf_to_bed(char*, char*, char*, int32_t, uint64_t, char*, char, char, double, char*, double, double, uint32_t, Chrom_info*)' at plink_data.c:8040:2: /usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 30 and 2147483670 bytes into a destination of size 262144 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ plink_data.c: In function 'int32_t merge_fam_id_scan(char*, char*, uint32_t, uintptr_t*, uint32_t*, uint32_t*, Ll_fam**, uint64_t*, uint32_t*, uint32_t*, uint32_t*)': plink_data.c:14584:22: warning: '%s' directive output may be truncated writing between 9 and 2147483645 bytes into a region of size 262122 [-Wformat-truncation=] 14584 | LOGERRPRINTFWW("Error: Failed to open %s. (--bfile expects a filename *prefix*; '.bed', '.bim', and '.fam' are automatically appended.)\n", famname); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ plink_common.h:1001:59: note: in definition of macro 'LOGERRPRINTFWW' 1001 | #define LOGERRPRINTFWW(...) snprintf(g_logbuf, LOGBUFLEN, __VA_ARGS__); wordwrapb(0); logerrprintb(); | ^~~~~~~~~~~ plink_data.c:14584:45: note: format string is defined here 14584 | LOGERRPRINTFWW("Error: Failed to open %s. (--bfile expects a filename *prefix*; '.bed', '.bim', and '.fam' are automatically appended.)\n", famname); | ^~ In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'int32_t merge_fam_id_scan(char*, char*, uint32_t, uintptr_t*, uint32_t*, uint32_t*, Ll_fam**, uint64_t*, uint32_t*, uint32_t*, uint32_t*)' at plink_data.c:14584:7: /usr/include/i386-linux-gnu/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 128 and 2147483764 bytes into a destination of size 262144 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o -llapack -lblas -lm -lpthread -ldl `dpkg-buildflags --get LDFLAGS` -lz -o plink make[2]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.2-231211' mv plink plink1.9 make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.2-231211' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_install dh_installdocs debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.2-231211' dh_installchangelogs debian/upstream.docs/upstream.changelog make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.2-231211' dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.2-231211' dh_installman debian/plink1.9.1 make[1]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.2-231211' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'plink1.9' in '../plink1.9_1.90~b7.2-231211-1_i386.deb'. dpkg-deb: building package 'plink1.9-dbgsym' in '../plink1.9-dbgsym_1.90~b7.2-231211-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../plink1.9_1.90~b7.2-231211-1_i386.buildinfo dpkg-genchanges --build=binary -O../plink1.9_1.90~b7.2-231211-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/77155 and its subdirectories I: Current time: Sun Jun 15 09:08:49 -12 2025 I: pbuilder-time-stamp: 1750021729 Mon May 13 14:45:52 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos12-i386.debian.net. Mon May 13 14:45:52 UTC 2024 I: Preparing to do remote build '2' on ionos12-i386.debian.net. Mon May 13 14:47:09 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. Mon May 13 14:47:10 UTC 2024 I: plink1.9_1.90~b7.2-231211-1_i386.changes: Format: 1.8 Date: Thu, 11 Jan 2024 16:57:57 +0100 Source: plink1.9 Binary: plink1.9 plink1.9-dbgsym Architecture: i386 Version: 1.90~b7.2-231211-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: plink1.9 - whole-genome association analysis toolset Closes: 1056682 Changes: plink1.9 (1.90~b7.2-231211-1) unstable; urgency=medium . * Team upload. * New upstream version * Do not Build-Depends on atlas Closes: #1056682 * Fix debian/get-orig-source * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 100e2218adfd6dc3f3a04c8093f49115a8814c6d 2610380 plink1.9-dbgsym_1.90~b7.2-231211-1_i386.deb c50fab8e2a9d6b355bce2a0dc40541476a875373 5321 plink1.9_1.90~b7.2-231211-1_i386.buildinfo 5c42b8cdda59661b2713ca2c3e92f70e6ab3828c 903176 plink1.9_1.90~b7.2-231211-1_i386.deb Checksums-Sha256: c7a8f120f20c3c81c026c1ad1d8eb55cfbf226f75fdb4d186f30c26f6864f083 2610380 plink1.9-dbgsym_1.90~b7.2-231211-1_i386.deb b501dab946c1809e656bf72d1ae334ae466cd7249d8372c8605f33e558c59df4 5321 plink1.9_1.90~b7.2-231211-1_i386.buildinfo c25b9228e2daddd7e471de959e4ed667a4704a1211599e4a3ed158b8a2e02f45 903176 plink1.9_1.90~b7.2-231211-1_i386.deb Files: 19d2059836163cde3a82ee864f7f90c1 2610380 debug optional plink1.9-dbgsym_1.90~b7.2-231211-1_i386.deb 303a0cc3cb06de4d40ecf9becb26ce58 5321 science optional plink1.9_1.90~b7.2-231211-1_i386.buildinfo ed31ea4f75d988cc07c46eee4f1d9293 903176 science optional plink1.9_1.90~b7.2-231211-1_i386.deb Mon May 13 14:47:11 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_8-27599.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.KJonkBAA/plink1.9_1.90~b7.2-231211-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.KJonkBAA/plink1.9_1.90~b7.2-231211-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.KJonkBAA/plink1.9_1.90~b7.2-231211-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.KJonkBAA/b1/plink1.9_1.90~b7.2-231211-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.KJonkBAA/b2/plink1.9_1.90~b7.2-231211-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.425s) 0.425s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.054s) 0.054s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 800ms CPU time consumed: 797ms Mon May 13 14:47:12 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Mon May 13 14:47:12 UTC 2024 I: plink1.9 from trixie built successfully and reproducibly on i386. Mon May 13 14:47:14 UTC 2024 I: Submitting .buildinfo files to external archives: Mon May 13 14:47:14 UTC 2024 I: Submitting 8.0K b1/plink1.9_1.90~b7.2-231211-1_i386.buildinfo.asc Mon May 13 14:47:15 UTC 2024 I: Submitting 8.0K b2/plink1.9_1.90~b7.2-231211-1_i386.buildinfo.asc Mon May 13 14:47:16 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon May 13 14:47:16 UTC 2024 I: Done submitting .buildinfo files. Mon May 13 14:47:16 UTC 2024 I: Removing signed plink1.9_1.90~b7.2-231211-1_i386.buildinfo.asc files: removed './b1/plink1.9_1.90~b7.2-231211-1_i386.buildinfo.asc' removed './b2/plink1.9_1.90~b7.2-231211-1_i386.buildinfo.asc'