Tue Apr 16 21:05:37 UTC 2024 I: starting to build plast/trixie/i386 on jenkins on '2024-04-16 21:05' Tue Apr 16 21:05:37 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_12/7667/console.log Tue Apr 16 21:05:37 UTC 2024 I: Downloading source for trixie/plast=2.3.2+dfsg-10 --2024-04-16 21:05:38-- http://deb.debian.org/debian/pool/main/p/plast/plast_2.3.2%2bdfsg-10.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2072 (2.0K) [text/prs.lines.tag] Saving to: ‘plast_2.3.2+dfsg-10.dsc’ 0K .. 100% 266M=0s 2024-04-16 21:05:38 (266 MB/s) - ‘plast_2.3.2+dfsg-10.dsc’ saved [2072/2072] Tue Apr 16 21:05:38 UTC 2024 I: plast_2.3.2+dfsg-10.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: plast Binary: plast, plast-example Architecture: any all Version: 2.3.2+dfsg-10 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://plast.inria.fr/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/plast Vcs-Git: https://salsa.debian.org/med-team/plast.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libpcre2-dev, default-jdk, libsimde-dev Package-List: plast deb science optional arch=any plast-example deb science optional arch=all Checksums-Sha1: 693e7fd60cb7cd41a9843320e1349a7a23d61671 5726436 plast_2.3.2+dfsg.orig.tar.xz e8ce02a1753cc87595f9e55e6976761ce12755e8 21100 plast_2.3.2+dfsg-10.debian.tar.xz Checksums-Sha256: db8bcabc66ecc2555d1aeeba68dfc459dd7977251274c1f793e78da092ee9ff1 5726436 plast_2.3.2+dfsg.orig.tar.xz 111b31c54c0b30d50de0c3d56c441f3a4ce16bab9964e7cdbe822d69eaf39b46 21100 plast_2.3.2+dfsg-10.debian.tar.xz Files: db86adecf11d4eb4e75280a4da50ce13 5726436 plast_2.3.2+dfsg.orig.tar.xz 4a5ea81dd68b36ea95c7247ce11d8cd0 21100 plast_2.3.2+dfsg-10.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOOOhQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEuWQ/8DxgRClqvEeEuDG2GDJqnmI1BNjxkZxFy 4cPK7fK9eLRpmybgiCoRd9BoA4BsaT4ZNyRTV/y9YCCTRaOPCGTFkyvBF5opNH7Y AGZ/Fy+N8Dl3h5AjfXFCsQgU9s/vUvUGxPtDgYFr3jy4TFyyXWPCZnOvsrbI6/2k tsW39EIEi8IjGCdZrpUJCyTjO5HGst/xjA5UfW/c4KB3JaP0ws1JhH7MYGH5LO4P 8/anOMMOgdKdB2VeLsZ33TyFko+Wvdim7dDZ9mr4zYxLeXgzTtw+QycY9EsgPp2K 4q9s3/DYKRz/SjOmNsljbwqB2ArROLb+ACPbjYLXVbER6lWx+YQ8qM4Mh0jcXHjt zSLtaMvDgm4MUtRC4ilZuBIMdbKqD6/83cLT95Gh9NkV2Yx4MKcrQZpJeLDPdeMG KFiY5rXvLhZfe+zS69vgdfLMVvJk/PsHzgqWU8MVw67UF8dPHJby2lvyqdIv8k8F H92BmIydpLb3q4s/pm0NnN2jb9hA8KMHHSF5N2Yl9yUE3gopQade11EqrweYrUIv eP2qYPYQVGTw8uVZQPhc2VoNdik/ogypeUQZY0R3Y8g5ODijF9VmVNPfytj0UQOv PIDZGTtMUA+yT4cnwNgOSQn214ZXyrqfvrakyQPiXbGRq3wzlc5yWsn8LcxS497p vG0pXYyXiHM= =GDeF -----END PGP SIGNATURE----- Tue Apr 16 21:05:38 UTC 2024 I: Checking whether the package is not for us Tue Apr 16 21:05:38 UTC 2024 I: Starting 1st build on remote node ionos12-i386.debian.net. Tue Apr 16 21:05:38 UTC 2024 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Tue Apr 16 21:14:25 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Apr 16 09:05:40 -12 2024 I: pbuilder-time-stamp: 1713301540 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [plast_2.3.2+dfsg-10.dsc] I: copying [./plast_2.3.2+dfsg.orig.tar.xz] I: copying [./plast_2.3.2+dfsg-10.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 5 18:36:04 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./plast_2.3.2+dfsg-10.dsc: no acceptable signature found dpkg-source: info: extracting plast in plast-2.3.2+dfsg dpkg-source: info: unpacking plast_2.3.2+dfsg.orig.tar.xz dpkg-source: info: unpacking plast_2.3.2+dfsg-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying adapt_auto_test_script.sh dpkg-source: info: applying no_msse3.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying simde.patch dpkg-source: info: applying pcre.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/22391/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='6fefdee94a844f5aa4df0b96d86ba2be' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='22391' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZXiXogRN/pbuilderrc_BYzq --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZXiXogRN/b1 --logfile b1/build.log plast_2.3.2+dfsg-10.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos12-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 16 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/22391/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libpcre2-dev, default-jdk, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19874 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libpcre2-dev; however: Package libpcre2-dev is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} cmake{a} cmake-data{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} java-common{a} libarchive-zip-perl{a} libarchive13{a} libasound2{a} libasound2-data{a} libatk1.0-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcups2{a} libcurl4{a} libdatrie1{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgtk2.0-0{a} libgtk2.0-common{a} libharfbuzz0b{a} libicu72{a} libjbig0{a} libjpeg62-turbo{a} libjsoncpp25{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libllvm17{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libnspr4{a} libnss3{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpciaccess0{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libproc2-0{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv0{a} libsimde-dev{a} libssh2-1{a} libsub-override-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libuv1{a} libvulkan1{a} libwebp7{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxml2{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} openjdk-17-jdk{a} openjdk-17-jdk-headless{a} openjdk-17-jre{a} openjdk-17-jre-headless{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} shared-mime-info{a} x11-common{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf curl dbus fonts-dejavu-extra libarchive-cpio-perl libatk-wrapper-java-jni libgail-common libgdk-pixbuf2.0-bin libglib2.0-data libgtk2.0-bin libldap-common libltdl-dev libmail-sendmail-perl librsvg2-common libsasl2-modules libxt-dev lynx mesa-vulkan-drivers psmisc publicsuffix wget xdg-user-dirs 0 packages upgraded, 161 newly installed, 0 to remove and 0 not upgraded. Need to get 227 MB of archives. After unpacking 708 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libproc2-0 i386 2:4.0.4-4 [65.4 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 procps i386 2:4.0.4-4 [876 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 openssl i386 3.1.5-1 [1246 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-2+b1 [314 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 libmagic1 i386 1:5.45-2+b1 [114 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-2+b1 [43.0 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-3 [1195 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.39.3-6 [93.3 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.0-3 [1413 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [307 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libglib2.0-0 i386 2.78.4-1 [1520 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b2 [727 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 shared-mime-info i386 2.4-1 [752 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo i386 1:2.1.5-2+b2 [169 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libpng16-16 i386 1.6.43-1 [285 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.20-1 [46.9 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libjbig0 i386 2.1-6.1+b1 [31.8 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 liblerc4 i386 4.0.0+ds-4+b1 [180 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libsharpyuv0 i386 1.3.2-0.4 [107 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libwebp7 i386 1.3.2-0.4 [314 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libtiff6 i386 4.5.1+git230720-4 [338 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libgdk-pixbuf-2.0-0 i386 2.42.10+dfsg-3+b1 [147 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 gtk-update-icon-cache i386 3.24.41-1 [46.0 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 hicolor-icon-theme all 0.17-2 [11.4 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 adwaita-icon-theme all 46.0-1 [614 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 at-spi2-common all 2.50.0-1 [163 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 ca-certificates-java all 20240118 [11.6 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libarchive13 i386 3.7.2-1 [386 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b3 [314 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-4+b1 [20.7 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-4+b1 [60.7 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5+b3 [196 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.59.0-1 [82.5 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libpsl5 i386 0.21.2-1+b1 [59.7 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libssh2-1 i386 1.11.0-4 [224 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 libcurl4 i386 8.5.0-2 [463 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.5.0-2+b2 [104 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libjsoncpp25 i386 1.9.5-6+b2 [89.2 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 librhash0 i386 1.4.3-3+b1 [143 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libuv1 i386 1.48.0-1 [156 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 cmake-data all 3.28.3-1 [2128 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 cmake i386 3.28.3-1 [11.7 MB] Get: 55 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 62 http://deb.debian.org/debian trixie/main i386 libelf1 i386 0.190-1+b1 [182 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1 [118 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 java-common all 0.75 [6640 B] Get: 69 http://deb.debian.org/debian trixie/main i386 libavahi-common-data i386 0.8-13+b1 [111 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libavahi-common3 i386 0.8-13+b1 [45.3 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 libdbus-1-3 i386 1.14.10-4 [216 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 libavahi-client3 i386 0.8-13+b1 [49.2 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libcups2 i386 2.4.7-1+b1 [263 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 liblcms2-2 i386 2.14-2+b1 [165 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 libfreetype6 i386 2.13.2+dfsg-1+b1 [449 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-core all 2.37-8 [840 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 fontconfig-config i386 2.15.0-1.1 [317 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 libfontconfig1 i386 2.15.0-1.1 [401 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 libnspr4 i386 2:4.35-1.1+b1 [118 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 libnss3 i386 2:3.99-1 [1523 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 libasound2-data all 1.2.10-3 [20.7 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 libasound2 i386 1.2.10-3 [394 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 libgraphite2-3 i386 1.3.14-2 [77.7 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 libharfbuzz0b i386 8.3.0-2 [2234 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 libpcsclite1 i386 2.0.1-1+b1 [52.2 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 openjdk-17-jre-headless i386 17.0.10+7-1 [42.7 MB] Get: 88 http://deb.debian.org/debian trixie/main i386 default-jre-headless i386 2:1.17-75 [3068 B] Get: 89 http://deb.debian.org/debian trixie/main i386 libgtk2.0-common all 2.24.33-3 [2659 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 libatk1.0-0 i386 2.50.0-1+b1 [49.7 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 libpixman-1-0 i386 0.42.2-1+b1 [555 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 libbsd0 i386 0.12.2-1 [134 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 libx11-data all 2:1.8.7-1 [328 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 libx11-6 i386 2:1.8.7-1 [822 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 libxcb-render0 i386 1.15-1 [116 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 libxcb-shm0 i386 1.15-1 [106 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 libxrender1 i386 1:0.9.10-1.1 [34.1 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 libcairo2 i386 1.18.0-1+b1 [587 kB] Get: 103 http://deb.debian.org/debian trixie/main i386 fontconfig i386 2.15.0-1.1 [462 kB] Get: 104 http://deb.debian.org/debian trixie/main i386 libfribidi0 i386 1.0.13-3+b1 [71.8 kB] Get: 105 http://deb.debian.org/debian trixie/main i386 libthai-data all 0.1.29-2 [168 kB] Get: 106 http://deb.debian.org/debian trixie/main i386 libdatrie1 i386 0.2.13-3 [39.5 kB] Get: 107 http://deb.debian.org/debian trixie/main i386 libthai0 i386 0.1.29-2 [50.1 kB] Get: 108 http://deb.debian.org/debian trixie/main i386 libpango-1.0-0 i386 1.52.0+ds-1 [224 kB] Get: 109 http://deb.debian.org/debian trixie/main i386 libpangoft2-1.0-0 i386 1.52.0+ds-1 [51.0 kB] Get: 110 http://deb.debian.org/debian trixie/main i386 libpangocairo-1.0-0 i386 1.52.0+ds-1 [35.9 kB] Get: 111 http://deb.debian.org/debian trixie/main i386 libxcomposite1 i386 1:0.4.5-1 [16.9 kB] Get: 112 http://deb.debian.org/debian trixie/main i386 libxfixes3 i386 1:6.0.0-2 [23.0 kB] Get: 113 http://deb.debian.org/debian trixie/main i386 libxcursor1 i386 1:1.2.1-1 [42.4 kB] Get: 114 http://deb.debian.org/debian trixie/main i386 libxdamage1 i386 1:1.1.6-1 [15.3 kB] Get: 115 http://deb.debian.org/debian trixie/main i386 libxi6 i386 2:1.8.1-1 [81.0 kB] Get: 116 http://deb.debian.org/debian trixie/main i386 libxinerama1 i386 2:1.1.4-3 [18.1 kB] Get: 117 http://deb.debian.org/debian trixie/main i386 libxrandr2 i386 2:1.5.4-1 [37.7 kB] Get: 118 http://deb.debian.org/debian trixie/main i386 libgtk2.0-0 i386 2.24.33-3 [1938 kB] Get: 119 http://deb.debian.org/debian trixie/main i386 libglvnd0 i386 1.7.0-1 [43.7 kB] Get: 120 http://deb.debian.org/debian trixie/main i386 libdrm-common all 2.4.120-2 [7688 B] Get: 121 http://deb.debian.org/debian trixie/main i386 libdrm2 i386 2.4.120-2 [41.4 kB] Get: 122 http://deb.debian.org/debian trixie/main i386 libglapi-mesa i386 23.3.5-1 [35.4 kB] Get: 123 http://deb.debian.org/debian trixie/main i386 libx11-xcb1 i386 2:1.8.7-1 [232 kB] Get: 124 http://deb.debian.org/debian trixie/main i386 libxcb-dri2-0 i386 1.15-1 [107 kB] Get: 125 http://deb.debian.org/debian trixie/main i386 libxcb-dri3-0 i386 1.15-1 [107 kB] Get: 126 http://deb.debian.org/debian trixie/main i386 libxcb-glx0 i386 1.15-1 [124 kB] Get: 127 http://deb.debian.org/debian trixie/main i386 libxcb-present0 i386 1.15-1 [106 kB] Get: 128 http://deb.debian.org/debian trixie/main i386 libxcb-randr0 i386 1.15-1 [118 kB] Get: 129 http://deb.debian.org/debian trixie/main i386 libxcb-sync1 i386 1.15-1 [109 kB] Get: 130 http://deb.debian.org/debian trixie/main i386 libxcb-xfixes0 i386 1.15-1 [110 kB] Get: 131 http://deb.debian.org/debian trixie/main i386 libxshmfence1 i386 1.3-1 [8976 B] Get: 132 http://deb.debian.org/debian trixie/main i386 libxxf86vm1 i386 1:1.1.4-1+b2 [21.7 kB] Get: 133 http://deb.debian.org/debian trixie/main i386 libvulkan1 i386 1.3.275.0-1 [141 kB] Get: 134 http://deb.debian.org/debian trixie/main i386 libdrm-amdgpu1 i386 2.4.120-2 [24.4 kB] Get: 135 http://deb.debian.org/debian trixie/main i386 libpciaccess0 i386 0.17-3 [53.6 kB] Get: 136 http://deb.debian.org/debian trixie/main i386 libdrm-intel1 i386 2.4.120-2 [66.5 kB] Get: 137 http://deb.debian.org/debian trixie/main i386 libdrm-nouveau2 i386 2.4.120-2 [20.8 kB] Get: 138 http://deb.debian.org/debian trixie/main i386 libdrm-radeon1 i386 2.4.120-2 [23.0 kB] Get: 139 http://deb.debian.org/debian trixie/main i386 libedit2 i386 3.1-20230828-1 [97.5 kB] Get: 140 http://deb.debian.org/debian trixie/main i386 libz3-4 i386 4.8.12-3.1+b2 [7989 kB] Get: 141 http://deb.debian.org/debian trixie/main i386 libllvm17 i386 1:17.0.6-5 [27.7 MB] Get: 142 http://deb.debian.org/debian trixie/main i386 libsensors-config all 1:3.6.0-9 [14.6 kB] Get: 143 http://deb.debian.org/debian trixie/main i386 libsensors5 i386 1:3.6.0-9 [35.4 kB] Get: 144 http://deb.debian.org/debian trixie/main i386 libgl1-mesa-dri i386 23.3.5-1 [8327 kB] Get: 145 http://deb.debian.org/debian trixie/main i386 libglx-mesa0 i386 23.3.5-1 [157 kB] Get: 146 http://deb.debian.org/debian trixie/main i386 libglx0 i386 1.7.0-1 [37.8 kB] Get: 147 http://deb.debian.org/debian trixie/main i386 libgl1 i386 1.7.0-1 [82.0 kB] Get: 148 http://deb.debian.org/debian trixie/main i386 libgif7 i386 5.2.2-1 [45.3 kB] Get: 149 http://deb.debian.org/debian trixie/main i386 x11-common all 1:7.7+23 [252 kB] Get: 150 http://deb.debian.org/debian trixie/main i386 libxtst6 i386 2:1.2.3-1.1 [28.6 kB] Get: 151 http://deb.debian.org/debian trixie/main i386 openjdk-17-jre i386 17.0.10+7-1 [184 kB] Get: 152 http://deb.debian.org/debian trixie/main i386 default-jre i386 2:1.17-75 [1056 B] Get: 153 http://deb.debian.org/debian trixie/main i386 openjdk-17-jdk-headless i386 17.0.10+7-1 [74.0 MB] Get: 154 http://deb.debian.org/debian trixie/main i386 default-jdk-headless i386 2:1.17-75 [1108 B] Get: 155 http://deb.debian.org/debian trixie/main i386 openjdk-17-jdk i386 17.0.10+7-1 [2829 kB] Get: 156 http://deb.debian.org/debian trixie/main i386 default-jdk i386 2:1.17-75 [1068 B] Get: 157 http://deb.debian.org/debian trixie/main i386 libpcre2-16-0 i386 10.42-4+b1 [244 kB] Get: 158 http://deb.debian.org/debian trixie/main i386 libpcre2-32-0 i386 10.42-4+b1 [233 kB] Get: 159 http://deb.debian.org/debian trixie/main i386 libpcre2-posix3 i386 10.42-4+b1 [55.8 kB] Get: 160 http://deb.debian.org/debian trixie/main i386 libpcre2-dev i386 10.42-4+b1 [759 kB] Get: 161 http://deb.debian.org/debian trixie/main i386 libsimde-dev all 0.8.0-1 [458 kB] Fetched 227 MB in 4s (53.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19874 files and directories currently installed.) Preparing to unpack .../000-libproc2-0_2%3a4.0.4-4_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../001-procps_2%3a4.0.4-4_i386.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.1.5-1_i386.deb ... Unpacking openssl (3.1.5-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../006-libmagic1_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic1:i386 (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-2+b1_i386.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../009-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-3_i386.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.39.3-6_i386.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../012-libpipeline1_1.5.7-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.12.0-3_i386.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package libgdk-pixbuf2.0-common. Preparing to unpack .../014-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../015-libglib2.0-0_2.78.4-1_i386.deb ... Unpacking libglib2.0-0:i386 (2.78.4-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../016-libicu72_72.1-4+b1_i386.deb ... Unpacking libicu72:i386 (72.1-4+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../017-libxml2_2.9.14+dfsg-1.3+b2_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../018-shared-mime-info_2.4-1_i386.deb ... Unpacking shared-mime-info (2.4-1) ... Selecting previously unselected package libjpeg62-turbo:i386. Preparing to unpack .../019-libjpeg62-turbo_1%3a2.1.5-2+b2_i386.deb ... Unpacking libjpeg62-turbo:i386 (1:2.1.5-2+b2) ... Selecting previously unselected package libpng16-16:i386. Preparing to unpack .../020-libpng16-16_1.6.43-1_i386.deb ... Unpacking libpng16-16:i386 (1.6.43-1) ... Selecting previously unselected package libdeflate0:i386. Preparing to unpack .../021-libdeflate0_1.20-1_i386.deb ... Unpacking libdeflate0:i386 (1.20-1) ... Selecting previously unselected package libjbig0:i386. Preparing to unpack .../022-libjbig0_2.1-6.1+b1_i386.deb ... Unpacking libjbig0:i386 (2.1-6.1+b1) ... Selecting previously unselected package liblerc4:i386. Preparing to unpack .../023-liblerc4_4.0.0+ds-4+b1_i386.deb ... Unpacking liblerc4:i386 (4.0.0+ds-4+b1) ... Selecting previously unselected package libsharpyuv0:i386. Preparing to unpack .../024-libsharpyuv0_1.3.2-0.4_i386.deb ... Unpacking libsharpyuv0:i386 (1.3.2-0.4) ... Selecting previously unselected package libwebp7:i386. Preparing to unpack .../025-libwebp7_1.3.2-0.4_i386.deb ... Unpacking libwebp7:i386 (1.3.2-0.4) ... Selecting previously unselected package libtiff6:i386. Preparing to unpack .../026-libtiff6_4.5.1+git230720-4_i386.deb ... Unpacking libtiff6:i386 (4.5.1+git230720-4) ... Selecting previously unselected package libgdk-pixbuf-2.0-0:i386. Preparing to unpack .../027-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3+b1_i386.deb ... Unpacking libgdk-pixbuf-2.0-0:i386 (2.42.10+dfsg-3+b1) ... Selecting previously unselected package gtk-update-icon-cache. Preparing to unpack .../028-gtk-update-icon-cache_3.24.41-1_i386.deb ... Unpacking gtk-update-icon-cache (3.24.41-1) ... Selecting previously unselected package hicolor-icon-theme. Preparing to unpack .../029-hicolor-icon-theme_0.17-2_all.deb ... Unpacking hicolor-icon-theme (0.17-2) ... Selecting previously unselected package adwaita-icon-theme. Preparing to unpack .../030-adwaita-icon-theme_46.0-1_all.deb ... Unpacking adwaita-icon-theme (46.0-1) ... Selecting previously unselected package at-spi2-common. Preparing to unpack .../031-at-spi2-common_2.50.0-1_all.deb ... Unpacking at-spi2-common (2.50.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../032-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../033-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../034-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../035-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../036-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../037-ca-certificates-java_20240118_all.deb ... Unpacking ca-certificates-java (20240118) ... Selecting previously unselected package libarchive13:i386. Preparing to unpack .../038-libarchive13_3.7.2-1_i386.deb ... Unpacking libarchive13:i386 (3.7.2-1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../039-libbrotli1_1.1.0-2+b3_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b3) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../040-libsasl2-modules-db_2.1.28+dfsg1-4+b1_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../041-libsasl2-2_2.1.28+dfsg1-4+b1_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../042-libldap-2.5-0_2.5.13+dfsg-5+b3_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.13+dfsg-5+b3) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../043-libnghttp2-14_1.59.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.59.0-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../044-libpsl5_0.21.2-1+b1_i386.deb ... Unpacking libpsl5:i386 (0.21.2-1+b1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../045-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../046-libssh2-1_1.11.0-4_i386.deb ... Unpacking libssh2-1:i386 (1.11.0-4) ... Selecting previously unselected package libcurl4:i386. Preparing to unpack .../047-libcurl4_8.5.0-2_i386.deb ... Unpacking libcurl4:i386 (8.5.0-2) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../048-libexpat1_2.5.0-2+b2_i386.deb ... Unpacking libexpat1:i386 (2.5.0-2+b2) ... Selecting previously unselected package libjsoncpp25:i386. Preparing to unpack .../049-libjsoncpp25_1.9.5-6+b2_i386.deb ... Unpacking libjsoncpp25:i386 (1.9.5-6+b2) ... Selecting previously unselected package librhash0:i386. 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Preparing to unpack .../157-libpcre2-32-0_10.42-4+b1_i386.deb ... Unpacking libpcre2-32-0:i386 (10.42-4+b1) ... Selecting previously unselected package libpcre2-posix3:i386. Preparing to unpack .../158-libpcre2-posix3_10.42-4+b1_i386.deb ... Unpacking libpcre2-posix3:i386 (10.42-4+b1) ... Selecting previously unselected package libpcre2-dev:i386. Preparing to unpack .../159-libpcre2-dev_10.42-4+b1_i386.deb ... Unpacking libpcre2-dev:i386 (10.42-4+b1) ... Selecting previously unselected package libsimde-dev. Preparing to unpack .../160-libsimde-dev_0.8.0-1_all.deb ... Unpacking libsimde-dev (0.8.0-1) ... Setting up libexpat1:i386 (2.5.0-2+b2) ... Setting up libpipeline1:i386 (1.5.7-2) ... Setting up libgraphite2-3:i386 (1.3.14-2) ... Setting up libsimde-dev (0.8.0-1) ... Setting up liblcms2-2:i386 (2.14-2+b1) ... Setting up libpixman-1-0:i386 (0.42.2-1+b1) ... Setting up libsharpyuv0:i386 (1.3.2-0.4) ... Setting up libpciaccess0:i386 (0.17-3) ... Setting up libxau6:i386 (1:1.0.9-1) ... Setting up libpsl5:i386 (0.21.2-1+b1) ... Setting up libicu72:i386 (72.1-4+b1) ... Setting up liblerc4:i386 (4.0.0+ds-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up java-common (0.75) ... Setting up libdatrie1:i386 (0.2.13-3) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:i386 (2.78.4-1) ... No schema files found: doing nothing. Setting up libglvnd0:i386 (1.7.0-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:i386 (1.1.0-2+b3) ... Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libsensors-config (1:3.6.0-9) ... Setting up libnghttp2-14:i386 (1.59.0-1) ... Setting up libmagic1:i386 (1:5.45-2+b1) ... Setting up libdeflate0:i386 (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up libjbig0:i386 (2.1-6.1+b1) ... Setting up libpcre2-16-0:i386 (10.42-4+b1) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-4+b1) ... Setting up libasound2-data (1.2.10-3) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:i386 (4.8.12-3.1+b2) ... Setting up libpcre2-32-0:i386 (10.42-4+b1) ... Setting up libuv1:i386 (1.48.0-1) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-2+b2) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libnspr4:i386 (2:4.35-1.1+b1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libavahi-common-data:i386 (0.8-13+b1) ... Setting up libdbus-1-3:i386 (1.14.10-4) ... Setting up libfribidi0:i386 (1.0.13-3+b1) ... Setting up libproc2-0:i386 (2:4.0.4-4) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16:i386 (1.6.43-1) ... Setting up autopoint (0.21-14) ... Setting up libjsoncpp25:i386 (1.9.5-6+b2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libpcsclite1:i386 (2.0.1-1+b1) ... Setting up libsensors5:i386 (1:3.6.0-9) ... Setting up libglapi-mesa:i386 (23.3.5-1) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-4+b1) ... Setting up libvulkan1:i386 (1.3.275.0-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:i386 (1.3.2-0.4) ... Setting up libgif7:i386 (5.2.2-1) ... Setting up libpcre2-posix3:i386 (10.42-4+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libxshmfence1:i386 (1.3-1) ... Setting up at-spi2-common (2.50.0-1) ... Setting up librhash0:i386 (1.4.3-3+b1) ... Setting up libtiff6:i386 (4.5.1+git230720-4) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-4) ... Setting up libasound2:i386 (1.2.10-3) ... Setting up libsub-override-perl (0.10-1) ... Setting up libthai-data (0.1.29-2) ... Setting up libssh2-1:i386 (1.11.0-4) ... Setting up libgtk2.0-common (2.24.33-3) ... Setting up cmake-data (3.28.3-1) ... Setting up libatk1.0-0:i386 (2.50.0-1+b1) ... Setting up openssl (3.1.5-1) ... Setting up libbsd0:i386 (0.12.2-1) ... Setting up libdrm-common (2.4.120-2) ... Setting up libelf1:i386 (0.190-1+b1) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up libxcb1:i386 (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libxcb-xfixes0:i386 (1.15-1) ... Setting up libpcre2-dev:i386 (10.42-4+b1) ... Setting up libtool (2.4.7-7) ... Setting up libarchive13:i386 (3.7.2-1) ... Setting up libxcb-render0:i386 (1.15-1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libxcb-glx0:i386 (1.15-1) ... Setting up libedit2:i386 (3.1-20230828-1) ... Setting up libavahi-common3:i386 (0.8-13+b1) ... Setting up libnss3:i386 (2:3.99-1) ... Setting up libxcb-shm0:i386 (1.15-1) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libxcb-present0:i386 (1.15-1) ... Setting up dh-autoreconf (20) ... Setting up libthai0:i386 (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libfreetype6:i386 (2.13.2+dfsg-1+b1) ... Setting up libxcb-sync1:i386 (1.15-1) ... Setting up shared-mime-info (2.4-1) ... Setting up libxcb-dri2-0:i386 (1.15-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libdrm2:i386 (2.4.120-2) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libxcb-randr0:i386 (1.15-1) ... Setting up libcurl4:i386 (8.5.0-2) ... Setting up libx11-6:i386 (2:1.8.7-1) ... Setting up libharfbuzz0b:i386 (8.3.0-2) ... Setting up libgdk-pixbuf-2.0-0:i386 (2.42.10+dfsg-3+b1) ... Setting up libfontconfig1:i386 (2.15.0-1.1) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libllvm17:i386 (1:17.0.6-5) ... Setting up libxcomposite1:i386 (1:0.4.5-1) ... Setting up libavahi-client3:i386 (0.8-13+b1) ... Setting up libdrm-amdgpu1:i386 (2.4.120-2) ... Setting up libxcb-dri3-0:i386 (1.15-1) ... Setting up gtk-update-icon-cache (3.24.41-1) ... Setting up libx11-xcb1:i386 (2:1.8.7-1) ... Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:i386 (2.4.120-2) ... Setting up libxdamage1:i386 (1:1.1.6-1) ... Setting up libxrender1:i386 (1:0.9.10-1.1) ... Setting up libdrm-radeon1:i386 (2.4.120-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpango-1.0-0:i386 (1.52.0+ds-1) ... Setting up libdrm-intel1:i386 (2.4.120-2) ... Setting up libgl1-mesa-dri:i386 (23.3.5-1) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:i386 (1.18.0-1+b1) ... Setting up libxxf86vm1:i386 (1:1.1.4-1+b2) ... Setting up adwaita-icon-theme (46.0-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libxfixes3:i386 (1:6.0.0-2) ... Setting up libxinerama1:i386 (2:1.1.4-3) ... Setting up libxrandr2:i386 (2:1.5.4-1) ... Setting up libcups2:i386 (2.4.7-1+b1) ... Setting up cmake (3.28.3-1) ... Setting up libpangoft2-1.0-0:i386 (1.52.0+ds-1) ... Setting up libpangocairo-1.0-0:i386 (1.52.0+ds-1) ... Setting up libglx-mesa0:i386 (23.3.5-1) ... Setting up libxi6:i386 (2:1.8.1-1) ... Setting up libglx0:i386 (1.7.0-1) ... Setting up libxtst6:i386 (2:1.2.3-1.1) ... Setting up libxcursor1:i386 (1:1.2.1-1) ... Setting up debhelper (13.15.3) ... Setting up libgl1:i386 (1.7.0-1) ... Setting up openjdk-17-jre-headless:i386 (17.0.10+7-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libgtk2.0-0:i386 (2.24.33-3) ... Processing triggers for libc-bin (2.37-15) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up openjdk-17-jdk-headless:i386 (17.0.10+7-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre-headless (2:1.17-75) ... Setting up openjdk-17-jre:i386 (17.0.10+7-1) ... Setting up default-jre (2:1.17-75) ... Setting up openjdk-17-jdk:i386 (17.0.10+7-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-i386/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up default-jdk-headless (2:1.17-75) ... Setting up default-jdk (2:1.17-75) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/plast-2.3.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../plast_2.3.2+dfsg-10_source.changes dpkg-buildpackage: info: source package plast dpkg-buildpackage: info: source version 2.3.2+dfsg-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg' set -e ; for SIMD in sse3 ; do \ export CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && export CFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && \ dh_auto_configure --builddirectory=obj-${SIMD} ; \ done cd obj-sse3 && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu .. CMake Warning (dev) at CMakeLists.txt:1 (project): cmake_minimum_required() should be called prior to this top-level project() call. Please see the cmake-commands(7) manual for usage documentation of both commands. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:6 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found JNI: /usr/lib/jvm/default-java/include found components: AWT JVM -- Configuring done (1.1s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/plast-2.3.2+dfsg/obj-sse3 set -e ; for SIMD in sse2 sse ; do \ export CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && export CFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && \ dh_auto_configure --builddirectory=obj-${SIMD} ; \ done cd obj-sse2 && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu .. CMake Warning (dev) at CMakeLists.txt:1 (project): cmake_minimum_required() should be called prior to this top-level project() call. Please see the cmake-commands(7) manual for usage documentation of both commands. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:6 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found JNI: /usr/lib/jvm/default-java/include found components: AWT JVM -- Configuring done (1.1s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/plast-2.3.2+dfsg/obj-sse2 cd obj-sse && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu .. CMake Warning (dev) at CMakeLists.txt:1 (project): cmake_minimum_required() should be called prior to this top-level project() call. Please see the cmake-commands(7) manual for usage documentation of both commands. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:6 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found JNI: /usr/lib/jvm/default-java/include found components: AWT JVM -- Configuring done (1.0s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/plast-2.3.2+dfsg/obj-sse dh_auto_configure cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu .. CMake Warning (dev) at CMakeLists.txt:1 (project): cmake_minimum_required() should be called prior to this top-level project() call. Please see the cmake-commands(7) manual for usage documentation of both commands. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:6 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Found JNI: /usr/lib/jvm/default-java/include found components: AWT JVM -- Configuring done (1.0s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu make[1]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg' set -e ; for SIMD in sse3 ; do \ dh_auto_build --builddirectory=obj-${SIMD} ; \ done cd obj-sse3 && make -j11 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3' /usr/bin/cmake -S/build/reproducible-path/plast-2.3.2+dfsg -B/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/CMakeFiles /build/reproducible-path/plast-2.3.2+dfsg/obj-sse3//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3' make -f CMakeFiles/PlastLibrary.dir/build.make CMakeFiles/PlastLibrary.dir/depend make -f CMakeFiles/plast.dir/build.make CMakeFiles/plast.dir/depend make[4]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3' cd /build/reproducible-path/plast-2.3.2+dfsg/obj-sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plast-2.3.2+dfsg /build/reproducible-path/plast-2.3.2+dfsg /build/reproducible-path/plast-2.3.2+dfsg/obj-sse3 /build/reproducible-path/plast-2.3.2+dfsg/obj-sse3 /build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/CMakeFiles/PlastLibrary.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3' cd /build/reproducible-path/plast-2.3.2+dfsg/obj-sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plast-2.3.2+dfsg /build/reproducible-path/plast-2.3.2+dfsg /build/reproducible-path/plast-2.3.2+dfsg/obj-sse3 /build/reproducible-path/plast-2.3.2+dfsg/obj-sse3 /build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/CMakeFiles/plast.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3' make[4]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3' make -f CMakeFiles/PlastLibrary.dir/build.make CMakeFiles/PlastLibrary.dir/build make -f CMakeFiles/plast.dir/build.make CMakeFiles/plast.dir/build make[4]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3' make[4]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3' [ 0%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o [ 1%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o [ 1%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o [ 2%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o [ 2%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/AbstractAlgorithm.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/AlgorithmPlastn.cpp [ 2%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o [ 2%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/AlgorithmPlastn.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/AlgorithmPlastn.cpp [ 2%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o [ 3%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o [ 3%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o [ 3%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/DatabasesProvider.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/AlgoIndexatorNucleotide.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/AlgoIndexatorNucleotide.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/AbstractAlgorithm.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/AbstractAlgorithm.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/DatabasesProvider.cpp /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops 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-D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/DatabasesProvider.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/DatabasesProvider.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/DatabasesProvider.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/DatabasesProvider.cpp [ 4%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/DefaultAlgoConfig.cpp [ 4%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/DefaultAlgoEnvironment.cpp [ 4%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/PlastnAlgoConfig.cpp [ 4%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o /usr/bin/c++ 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-funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIterator.cpp [ 8%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIteratorNull.cpp [ 9%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/CompositionHitIterator.cpp [ 9%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp [ 9%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/FullGapHitIterator.cpp [ 10%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp [ 11%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIterator.cpp [ 11%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/hsp/HspExtensionCmd.cpp [ 11%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/hsp/HspGeneratorCmd.cpp [ 12%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIterator.cpp [ 12%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIteratorCached.cpp [ 12%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIteratorNull.cpp [ 12%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp [ 13%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp [ 13%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapExtendHitIterator.cpp [ 13%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/hsp/HspExtensionCmd.cpp [ 13%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/hsp/HspGeneratorCmd.cpp [ 14%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIterator.cpp [ 14%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorNull.cpp [ 15%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIterator.cpp [ 15%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp [ 16%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp [ 16%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o [ 16%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIteratorCached.cpp /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/Statistics.cpp [ 16%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapExtendHitIterator.cpp [ 17%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp [ 18%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIterator.cpp [ 18%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsSpouge.cpp [ 18%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorNull.cpp [ 18%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp: In member function 'double statistics::impl::GlobalParametersPlastn::karlinLHtoK(Blast_ScoreFreq*, double, double)': /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 415 | register double innerSum; | ^~~~~~~~ [ 19%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp [ 19%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/AbstractAlignmentContainer.cpp [ 19%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/Statistics.cpp [ 20%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/Alignment.cpp [ 21%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp [ 21%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsSpouge.cpp [ 21%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/AlignmentContainerFactory.cpp [ 21%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/AbstractAlignmentContainer.cpp [ 21%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 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-I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbFileIndexReader.cpp [ 44%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp [ 44%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbSequenceIterator.cpp [ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BufferedCachedSequenceDatabase.cpp [ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BufferedSequenceDatabase.cpp [ 45%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbFileIndexReader.cpp [ 45%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbSequenceIterator.cpp [ 46%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BufferedCachedSequenceDatabase.cpp [ 46%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BufferedSequenceDatabase.cpp [ 46%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp [ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/DefaultAlphabet.cpp [ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp [ 48%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp [ 48%] Building CXX object CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp [ 49%] Building CXX object CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/DefaultAlphabet.cpp [ 49%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const std::string&)': /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function 'static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const std::string&)': /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp [ 50%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp [ 50%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 50%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp [ 51%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp [ 51%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o [ 51%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/Sequence.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const std::string&)': /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function 'static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const std::string&)': /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/SequenceTokenizer.cpp [ 52%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/StringSequenceIterator.cpp [ 52%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 52%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/CommandDispatcher.cpp [ 53%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/ConfigFileProperties.cpp [ 54%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp [ 54%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/DirectoryIterator.cpp [ 54%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/FileLineIterator.cpp [ 54%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp [ 54%] Building CXX object CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/Sequence.cpp [ 55%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/Observer.cpp [ 56%] Building CXX object CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/SequenceTokenizer.cpp [ 56%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/Property.cpp [ 57%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp [ 57%] Building CXX object CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/StringSequenceIterator.cpp [ 57%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c 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CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/CommandDispatcher.cpp [ 58%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include 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CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/DirectoryIterator.cpp [ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/AbstractDatabaseIndex.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor 'dp::impl::SystemCommand::~SystemCommand()': /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ [ 59%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/FileLineIterator.cpp [ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseIndex.cpp [ 60%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -c 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CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/TokenizerIterator.cpp [ 62%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndexOptim.cpp [ 62%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/WrapperIterator.cpp [ 63%] Building C object CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/retrievall.c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:16: warning: 'get_bits_value' is static but used in inline function 'get_packed_value' which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor 'dp::impl::SystemCommand::~SystemCommand()': /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ [ 64%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/XmlReader.cpp [ 64%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/core/PlastCmd.cpp [ 64%] Building CXX object CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/AbstractDatabaseIndex.cpp [ 64%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o /usr/bin/c++ -D__LINUX__ 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-Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseIndexHash.cpp [ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp [ 66%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/Helper.cpp [ 66%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndex.cpp [ 66%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/Wrapper.cpp [ 66%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndexOptim.cpp [ 67%] Building C object CMakeFiles/plast.dir/src/index/impl/retrievall.c.o /usr/bin/cc -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/plast.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/retrievall.c [ 68%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:16: warning: 'get_bits_value' is static but used in inline function 'get_packed_value' which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ [ 68%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp [ 68%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o [ 68%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/core/PlastCmd.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 69%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 69%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp [ 69%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp [ 69%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 70%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp [ 71%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/Helper.cpp [ 71%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp [ 71%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/Wrapper.cpp [ 71%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp [ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp [ 73%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:50: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp [ 73%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp [ 73%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 74%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp: In member function 'void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:33: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:39: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp [ 75%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp [ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp [ 75%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 76%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp [ 77%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In destructor 'virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", | ~~^ | | | long int | %d 163 | i, | ~ | | | size_t {aka unsigned int} /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In member function 'virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~^ | | | long int | %d 257 | _currentAlgo, | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} [ 77%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp [ 77%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp [ 77%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp [ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp [ 78%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp [ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:50: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 79%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp [ 79%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp [ 79%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp [ 80%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp [ 81%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsMemory.cpp [ 81%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsMemoryFile.cpp [ 81%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsThread.cpp [ 82%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsTime.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()': /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp [ 83%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsMemory.cpp [ 83%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsMemoryFile.cpp [ 83%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsThread.cpp [ 83%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp [ 84%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsTime.cpp [ 84%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o [ 84%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedIterator.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/ZlibFile.cpp [ 84%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp [ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedModel.cpp [ 86%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o [ 86%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/BasicSeedModel.cpp [ 86%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp [ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp: In member function 'void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:33: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:39: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 87%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp [ 88%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In destructor 'virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", | ~~^ | | | long int | %d 163 | i, | ~ | | | size_t {aka unsigned int} /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In member function 'virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~^ | | | long int | %d 257 | _currentAlgo, | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} [ 88%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/dust.c [ 88%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/genwin.c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp: In member function 'void seed::impl::SubSeedModel::dump()': /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:21: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~~~~~ | | | | long int size_t {aka unsigned int} | %d /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:248:25: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 248 | printf ("[%ld->%d] ", j, _equivalenceTable[i][j] ); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d [ 89%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/seg.c [ 89%] Building CXX object CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp [ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp [ 89%] Building CXX object CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp [ 90%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp [ 90%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp [ 90%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsMemory.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsMemoryFile.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsThread.cpp [ 93%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o [ 93%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsTime.cpp /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp [ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsMemory.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp: In function 'int main(int, char**)': /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp:120:104: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld cores available\n\n", | ~~^ | | | long int | %d ...... 126 | os::impl::DefaultFactory::thread().getNbCores() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | size_t {aka unsigned int} /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()': /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsThread.cpp [ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsMemoryFile.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsTime.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/ZlibFile.cpp [ 95%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c 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-Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp [ 97%] Building CXX object CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -MF 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CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp: In member function 'void seed::impl::SubSeedModel::dump()': /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:21: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~~~~~ | | | | long int size_t {aka unsigned int} | %d /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:248:25: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 248 | printf ("[%ld->%d] ", j, _equivalenceTable[i][j] ); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d make[4]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-sse3' [ 99%] Built target PlastLibrary /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp: In function 'int main(int, char**)': /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp:120:104: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld cores available\n\n", | ~~^ | | | long int | %d ...... 126 | os::impl::DefaultFactory::thread().getNbCores() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | size_t {aka unsigned int} [100%] Linking CXX executable bin/None/plast /usr/bin/cmake -E cmake_link_script CMakeFiles/plast.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 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CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o 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-ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/PlastnAlgoConfig.cpp [ 4%] Building CXX object CMakeFiles/plast.dir/src/algo/core/impl/ScoreMatrix.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 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CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/BasicAlgoIndexator.cpp [ 4%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/common/AbstractHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/common/AbstractHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/common/AbstractHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/common/AbstractHitIterator.cpp.o -c 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CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/DatabasesProvider.cpp [ 5%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ 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CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIteratorNull.cpp [ 7%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o -c 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/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp [ 8%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoEnvironment.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include 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CMakeFiles/plast.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/hsp/HspGeneratorCmd.cpp [ 9%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIterator.cpp [ 9%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIteratorCached.cpp [ 9%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ 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-ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapExtendHitIterator.cpp [ 10%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIterator.cpp [ 10%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorNull.cpp [ 10%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -c 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/usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/Statistics.cpp [ 12%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 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CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/AbstractAlignmentContainer.cpp [ 13%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/Alignment.cpp [ 13%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/AlignmentContainerFactory.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp: In member function 'double statistics::impl::GlobalParametersPlastn::karlinLHtoK(Blast_ScoreFreq*, double, double)': /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 415 | register double innerSum; | ^~~~~~~~ [ 14%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/ScoreMatrix.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT 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CMakeFiles/plast.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/SortContainerVisitor.cpp [ 26%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp [ 26%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -MF CMakeFiles/plast.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/XmlOutputVisitor.cpp [ 27%] Building CXX object CMakeFiles/plast.dir/src/database/impl/AbstractSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/AbstractSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/AbstractSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/AbstractSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/AbstractSequenceIterator.cpp [ 27%] 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CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIteratorCached.cpp [ 29%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp [ 29%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbFileIndexReader.cpp [ 29%] Building 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BufferedSequenceDatabase.cpp [ 30%] Building CXX object CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops 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CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapExtendHitIterator.cpp [ 31%] Building CXX object CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/DefaultAlphabet.cpp [ 32%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIterator.cpp [ 32%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp [ 33%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp [ 33%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorNull.cpp [ 33%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp [ 33%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 34%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp [ 34%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const std::string&)': /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function 'static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const std::string&)': /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp [ 35%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/Statistics.cpp [ 35%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp [ 35%] Building CXX object CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/Sequence.cpp [ 36%] Building CXX object CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/SequenceTokenizer.cpp [ 36%] Building CXX object CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/StringSequenceIterator.cpp [ 36%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/CommandDispatcher.cpp [ 37%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/ConfigFileProperties.cpp [ 37%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/DirectoryIterator.cpp [ 37%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/FileLineIterator.cpp [ 38%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/Observer.cpp [ 38%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/Property.cpp [ 39%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp [ 40%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o /usr/bin/c++ -D__LINUX__ 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-Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsSpouge.cpp [ 41%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/XmlReader.cpp [ 41%] Building CXX object CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c 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-I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/AbstractAlignmentContainer.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor 'dp::impl::SystemCommand::~SystemCommand()': /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ [ 42%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseIndexHash.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp: In member function 'double statistics::impl::GlobalParametersPlastn::karlinLHtoK(Blast_ScoreFreq*, double, double)': /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 415 | register double innerSum; | ^~~~~~~~ [ 42%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -MF 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/build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndexOptim.cpp [ 43%] Building C object CMakeFiles/plast.dir/src/index/impl/retrievall.c.o /usr/bin/cc -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/plast.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/retrievall.c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:16: warning: 'get_bits_value' is static but used in inline function 'get_packed_value' which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/Alignment.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/Alignment.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/Alignment.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/Alignment.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/Alignment.cpp [ 44%] Building CXX object 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-ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/BasicAlignmentContainer.cpp [ 44%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp [ 45%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/Helper.cpp [ 45%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/Wrapper.cpp [ 46%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/HspContainer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/HspContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/HspContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/HspContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/HspContainer.cpp [ 47%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp [ 47%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include 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-I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 48%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 48%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 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-Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp [ 48%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP 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-D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/UngapAlignmentContainer.cpp [ 49%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp [ 49%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/filter/impl/AlignmentFilterFactory.cpp [ 50%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp [ 50%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp [ 50%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c 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/build/reproducible-path/plast-2.3.2+dfsg/src/alignment/filter/impl/AlignmentFilterOperator.cpp [ 51%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AlignmentFilterXML.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/filter/impl/AlignmentFilterXML.cpp [ 52%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ [ 52%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:50: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 52%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp [ 52%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/tools/impl/AlignmentContainerShrinkCmd.cpp [ 53%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp: In member function 'void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:33: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:39: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 53%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp [ 54%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In destructor 'virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", | ~~^ | | | long int | %d 163 | i, | ~ | | | size_t {aka unsigned int} /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In member function 'virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~^ | | | long int | %d 257 | _currentAlgo, | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} [ 54%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp [ 54%] Building CXX object CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp [ 55%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentOverlapCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/tools/impl/AlignmentOverlapCmd.cpp [ 56%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp [ 56%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o [ 56%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitter.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/tools/impl/AlignmentSplitter.cpp [ 56%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp [ 57%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp [ 57%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp [ 57%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp [ 58%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsMemory.cpp [ 58%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsMemoryFile.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 58%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsThread.cpp [ 59%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsTime.cpp [ 59%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp [ 60%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsMemory.cpp [ 60%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsMemoryFile.cpp [ 60%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsThread.cpp [ 60%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitterBanded.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitterBanded.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitterBanded.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/AlignmentSplitterBanded.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/tools/impl/AlignmentSplitterBanded.cpp [ 61%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsTime.cpp [ 61%] Building CXX object CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/ZlibFile.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()': /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedIterator.cpp [ 62%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedModel.cpp [ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/SemiGappedAlign.cpp.o [ 63%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops 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/build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/BasicSeedModel.cpp [ 63%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp [ 64%] Building CXX object CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -MF CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o.d -o CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp [ 64%] Building C object CMakeFiles/plast.dir/src/seg/impl/dust.c.o /usr/bin/cc -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/dust.c.o -MF CMakeFiles/plast.dir/src/seg/impl/dust.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/dust.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/dust.c [ 64%] Building C object CMakeFiles/plast.dir/src/seg/impl/genwin.c.o /usr/bin/cc -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -MF CMakeFiles/plast.dir/src/seg/impl/genwin.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/genwin.c [ 65%] Building C object CMakeFiles/plast.dir/src/seg/impl/seg.c.o /usr/bin/cc -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/seg.c.o -MF CMakeFiles/plast.dir/src/seg/impl/seg.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/seg.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/seg.c [ 65%] Building CXX object CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -MF CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o.d -o CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp [ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/tools/impl/SemiGappedAlignTraceback.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp: In member function 'void seed::impl::SubSeedModel::dump()': /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:21: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~~~~~ | | | | long int size_t {aka unsigned int} | %d /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:248:25: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 248 | printf ("[%ld->%d] ", j, _equivalenceTable[i][j] ); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d [ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareContainerVisitor.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareContainerVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareContainerVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareContainerVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/CompareContainerVisitor.cpp [ 66%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareResultVisitor.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareResultVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareResultVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/CompareResultVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/CompareResultVisitor.cpp [ 66%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/FilterContainerVisitor.cpp [ 66%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp [ 67%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ModelBuilderVisitor.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ModelBuilderVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ModelBuilderVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ModelBuilderVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/ModelBuilderVisitor.cpp [ 67%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp [ 67%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/QueryReorderVisitor.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp: In function 'int main(int, char**)': /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp:120:104: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld cores available\n\n", | ~~^ | | | long int | %d ...... 126 | os::impl::DefaultFactory::thread().getNbCores() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | size_t {aka unsigned int} [ 68%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include 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CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o CMakeFiles/plast.dir/src/database/impl/BufferedSequenceDatabase.cpp.o CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o CMakeFiles/plast.dir/src/index/impl/retrievall.c.o CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o CMakeFiles/plast.dir/src/seg/impl/dust.c.o CMakeFiles/plast.dir/src/seg/impl/genwin.c.o CMakeFiles/plast.dir/src/seg/impl/seg.c.o CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -o bin/None/plast -lpthread -lpcre2-8 [ 71%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BasicSequenceBuilder.cpp [ 71%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbAsn1HeaderDecoder.cpp [ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp [ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbFileIndexReader.cpp [ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbSequenceIterator.cpp make[4]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2' [ 72%] Built target plast [ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BufferedCachedSequenceDatabase.cpp [ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BufferedSequenceDatabase.cpp [ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp [ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/DefaultAlphabet.cpp [ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp [ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp [ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp [ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const std::string&)': /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function 'static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const std::string&)': /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp [ 76%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp [ 76%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/Sequence.cpp [ 77%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/SequenceTokenizer.cpp [ 77%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/StringSequenceIterator.cpp [ 77%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/CommandDispatcher.cpp [ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/ConfigFileProperties.cpp [ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/DirectoryIterator.cpp [ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/FileLineIterator.cpp [ 79%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/Observer.cpp [ 79%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/Property.cpp [ 80%] Building CXX object 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-I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/TokenizerIterator.cpp [ 80%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/WrapperIterator.cpp [ 81%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong 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CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseIndex.cpp [ 82%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseIndexHash.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor 'dp::impl::SystemCommand::~SystemCommand()': /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ [ 82%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT 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CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndexOptim.cpp [ 83%] Building C object CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/retrievall.c [ 83%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/core/PlastCmd.cpp [ 83%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:16: warning: 'get_bits_value' is static but used in inline function 'get_packed_value' which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ [ 84%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/Helper.cpp [ 84%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/Wrapper.cpp [ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp [ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp [ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 86%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 86%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp [ 86%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp [ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp [ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp [ 88%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp [ 88%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:50: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 88%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp [ 89%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp: In member function 'void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:33: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:39: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 89%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp [ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp [ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp [ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp [ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp [ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In destructor 'virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", | ~~^ | | | long int | %d 163 | i, | ~ | | | size_t {aka unsigned int} /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In member function 'virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~^ | | | long int | %d 257 | _currentAlgo, | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} [ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp [ 92%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp [ 92%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()': /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 93%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsMemory.cpp [ 93%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsMemoryFile.cpp [ 93%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsThread.cpp [ 94%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsTime.cpp [ 94%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp [ 95%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsMemory.cpp [ 95%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsMemoryFile.cpp [ 95%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsThread.cpp [ 96%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsTime.cpp [ 96%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/ZlibFile.cpp [ 96%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedIterator.cpp [ 97%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedModel.cpp [ 97%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/BasicSeedModel.cpp [ 97%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp [ 98%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp [ 98%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o [ 98%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/genwin.c /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/dust.c [ 99%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/seg.c [ 99%] Building CXX object CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp: In member function 'void seed::impl::SubSeedModel::dump()': /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:21: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~~~~~ | | | | long int size_t {aka unsigned int} | %d /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:248:25: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 248 | printf ("[%ld->%d] ", j, _equivalenceTable[i][j] ); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp: In function 'int main(int, char**)': /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp:120:104: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld cores available\n\n", | ~~^ | | | long int | %d ...... 126 | os::impl::DefaultFactory::thread().getNbCores() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | size_t {aka unsigned int} [100%] Linking CXX 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CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o make[4]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2' [100%] Built target PlastLibrary make[3]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/plast-2.3.2+dfsg/obj-sse2/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-sse2' cd obj-sse && make -j11 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-sse' /usr/bin/cmake -S/build/reproducible-path/plast-2.3.2+dfsg -B/build/reproducible-path/plast-2.3.2+dfsg/obj-sse --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/plast-2.3.2+dfsg/obj-sse/CMakeFiles /build/reproducible-path/plast-2.3.2+dfsg/obj-sse//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-sse' make -f CMakeFiles/PlastLibrary.dir/build.make CMakeFiles/PlastLibrary.dir/depend make -f CMakeFiles/plast.dir/build.make CMakeFiles/plast.dir/depend make[4]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-sse' cd /build/reproducible-path/plast-2.3.2+dfsg/obj-sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plast-2.3.2+dfsg /build/reproducible-path/plast-2.3.2+dfsg /build/reproducible-path/plast-2.3.2+dfsg/obj-sse /build/reproducible-path/plast-2.3.2+dfsg/obj-sse /build/reproducible-path/plast-2.3.2+dfsg/obj-sse/CMakeFiles/PlastLibrary.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-sse' cd /build/reproducible-path/plast-2.3.2+dfsg/obj-sse && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/plast-2.3.2+dfsg /build/reproducible-path/plast-2.3.2+dfsg /build/reproducible-path/plast-2.3.2+dfsg/obj-sse 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CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/PlastnAlgoConfig.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/PlastnAlgoConfig.cpp [ 5%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/ScoreMatrix.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/ScoreMatrix.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/ScoreMatrix.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/ScoreMatrix.cpp.o -c 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CMakeFiles/plast.dir/src/algo/core/impl/ScoreMatrix.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/core/impl/ScoreMatrix.cpp.o -MF CMakeFiles/plast.dir/src/algo/core/impl/ScoreMatrix.cpp.o.d -o CMakeFiles/plast.dir/src/algo/core/impl/ScoreMatrix.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/ScoreMatrix.cpp [ 6%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/common/AbstractHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/common/AbstractHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/common/AbstractHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/common/AbstractHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/common/AbstractHitIterator.cpp [ 6%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP 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CMakeFiles/plast.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/common/AbstractPipeHitIterator.cpp [ 7%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/CompositionHitIterator.cpp [ 7%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/FullGapHitIterator.cpp [ 8%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIterator.cpp [ 9%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/CompositionHitIterator.cpp [ 9%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/FullGapHitIterator.cpp [ 9%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIteratorNull.cpp [ 10%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIterator.cpp [ 10%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp [ 11%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp [ 11%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/hsp/HspExtensionCmd.cpp [ 11%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/hsp/HspGeneratorCmd.cpp [ 12%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIterator.cpp [ 12%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include 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-fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIteratorCached.cpp [ 12%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp [ 13%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp [ 13%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/hsp/HspExtensionCmd.cpp [ 13%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapExtendHitIterator.cpp [ 13%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/hsp/HspGeneratorCmd.cpp [ 14%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIterator.cpp [ 15%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIterator.cpp [ 15%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorNull.cpp [ 15%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIteratorCached.cpp [ 15%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp [ 15%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapExtendHitIterator.cpp [ 16%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp [ 16%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux 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-Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp [ 17%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsSpouge.cpp [ 18%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIterator.cpp [ 18%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/AbstractAlignmentContainer.cpp [ 18%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorNull.cpp [ 18%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp: In member function 'double statistics::impl::GlobalParametersPlastn::karlinLHtoK(Blast_ScoreFreq*, double, double)': /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 415 | register double innerSum; | ^~~~~~~~ [ 19%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -c 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CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/ReaderAlignmentContainer.cpp [ 23%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/Alignment.cpp [ 23%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/UngapAlignmentContainer.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp: In member function 'double statistics::impl::GlobalParametersPlastn::karlinLHtoK(Blast_ScoreFreq*, double, double)': /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 415 | register double innerSum; | ^~~~~~~~ [ 24%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/filter/impl/AbstractAlignmentFilterFactory.cpp [ 24%] Building CXX object 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CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/XmlOutputVisitor.cpp [ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/AbstractSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/AbstractSequenceIterator.cpp [ 42%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BasicSequenceBuilder.cpp [ 42%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbAsn1HeaderDecoder.cpp [ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BasicSequenceBuilder.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ 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-ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp [ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbAsn1HeaderDecoder.cpp [ 43%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbFileIndexReader.cpp [ 44%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbDatabaseQuickReader.cpp [ 44%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbSequenceIterator.cpp [ 45%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BufferedCachedSequenceDatabase.cpp [ 45%] Building CXX object 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-I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbFileIndexReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbFileIndexReader.cpp [ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbSequenceIterator.cpp [ 46%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BufferedCachedSequenceDatabase.cpp [ 46%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BufferedSequenceDatabase.cpp [ 46%] Building CXX object CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp [ 47%] Building CXX object CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/DefaultAlphabet.cpp [ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp [ 47%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp [ 48%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp [ 48%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp [ 49%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/DefaultAlphabet.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const std::string&)': /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function 'static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const std::string&)': /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp [ 50%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp [ 50%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 50%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp [ 51%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const std::string&)': /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function 'static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const std::string&)': /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp [ 51%] Building CXX object CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/Sequence.cpp [ 51%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 52%] Building CXX object CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/SequenceTokenizer.cpp [ 53%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp [ 53%] Building CXX object CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/StringSequenceIterator.cpp [ 53%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp [ 53%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o -MF 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-I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/Property.cpp [ 60%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseIndex.cpp [ 61%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp [ 62%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseIndexHash.cpp [ 62%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndex.cpp [ 62%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/TokenizerIterator.cpp [ 62%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/WrapperIterator.cpp [ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/XmlReader.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor 'dp::impl::SystemCommand::~SystemCommand()': /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ [ 63%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndexOptim.cpp [ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/AbstractDatabaseIndex.cpp [ 64%] Building C object CMakeFiles/plast.dir/src/index/impl/retrievall.c.o /usr/bin/cc -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/plast.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/retrievall.c [ 64%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseIndex.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:16: warning: 'get_bits_value' is static but used in inline function 'get_packed_value' which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseIndexHash.cpp [ 65%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/core/PlastCmd.cpp [ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndex.cpp [ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndexOptim.cpp [ 65%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp [ 66%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/Helper.cpp [ 67%] Building C object CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/retrievall.c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:16: warning: 'get_bits_value' is static but used in inline function 'get_packed_value' which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/Wrapper.cpp [ 68%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp [ 68%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp [ 68%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/core/PlastCmd.cpp [ 68%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 68%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp [ 69%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 69%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp [ 70%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/Helper.cpp [ 70%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/Wrapper.cpp [ 70%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 71%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp [ 71%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp [ 71%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 72%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ [ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 73%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp [ 73%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp [ 74%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp [ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp [ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:50: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 75%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp [ 75%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp [ 76%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp [ 76%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp [ 76%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ [ 77%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:50: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp: In member function 'void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:33: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:39: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In destructor 'virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", | ~~^ | | | long int | %d 163 | i, | ~ | | | size_t {aka unsigned int} /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In member function 'virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~^ | | | long int | %d 257 | _currentAlgo, | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} [ 77%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp [ 77%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp [ 78%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp [ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp [ 78%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp [ 78%] Building CXX object CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp: In member function 'void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:33: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:39: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 79%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp [ 79%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o [ 80%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp [ 80%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp [ 81%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In destructor 'virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", | ~~^ | | | long int | %d 163 | i, | ~ | | | size_t {aka unsigned int} /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In member function 'virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~^ | | | long int | %d 257 | _currentAlgo, | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} [ 81%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp [ 82%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 82%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()': /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp [ 83%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsMemory.cpp [ 83%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsMemoryFile.cpp [ 83%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsThread.cpp [ 84%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o [ 84%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsTime.cpp /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp [ 85%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsMemory.cpp [ 85%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsMemoryFile.cpp [ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp [ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o [ 85%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsThread.cpp [ 86%] Building CXX object CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o [ 86%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsTime.cpp /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/ZlibFile.cpp [ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp [ 87%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o [ 88%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedIterator.cpp /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedModel.cpp [ 88%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/BasicSeedModel.cpp [ 88%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp [ 88%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp [ 88%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp [ 89%] Building CXX object CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -MF CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o.d -o CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp [ 89%] Building C object CMakeFiles/plast.dir/src/seg/impl/dust.c.o /usr/bin/cc -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/dust.c.o -MF CMakeFiles/plast.dir/src/seg/impl/dust.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/dust.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/dust.c [ 89%] Building C object CMakeFiles/plast.dir/src/seg/impl/genwin.c.o /usr/bin/cc -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -MF CMakeFiles/plast.dir/src/seg/impl/genwin.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/genwin.c [ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp: In member function 'void seed::impl::SubSeedModel::dump()': /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:21: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~~~~~ | | | | long int size_t {aka unsigned int} | %d /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:248:25: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 248 | printf ("[%ld->%d] ", j, _equivalenceTable[i][j] ); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()': /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 91%] Building C object CMakeFiles/plast.dir/src/seg/impl/seg.c.o /usr/bin/cc -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/seg.c.o -MF CMakeFiles/plast.dir/src/seg/impl/seg.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/seg.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/seg.c [ 91%] Building CXX object CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -MF CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o.d -o CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp [ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp [ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp [ 92%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsMemory.cpp [ 92%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsMemoryFile.cpp [ 92%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsThread.cpp [ 93%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsTime.cpp [ 93%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp [ 94%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o [ 94%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsMemory.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsMemoryFile.cpp [ 94%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o [ 94%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o [ 95%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsThread.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsTime.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/ZlibFile.cpp [ 95%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedIterator.cpp [ 96%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedModel.cpp [ 96%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/BasicSeedModel.cpp [ 96%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp [ 97%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp [ 97%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o [ 97%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/dust.c /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/genwin.c [ 98%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/seg.c [ 98%] Building CXX object CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-sse/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp: In function 'int main(int, char**)': /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp:120:104: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld cores available\n\n", | ~~^ | | | long int | %d ...... 126 | os::impl::DefaultFactory::thread().getNbCores() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | size_t {aka unsigned int} /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp: In member function 'void seed::impl::SubSeedModel::dump()': /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:21: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~~~~~ | | | | long int size_t {aka unsigned int} | %d /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:248:25: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 248 | printf ("[%ld->%d] ", j, _equivalenceTable[i][j] ); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp: In function 'int main(int, char**)': /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp:120:104: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld cores available\n\n", | ~~^ | | | long int | %d ...... 126 | os::impl::DefaultFactory::thread().getNbCores() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | size_t {aka unsigned int} [ 99%] Linking CXX executable bin/None/plast /usr/bin/cmake -E cmake_link_script CMakeFiles/plast.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro 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CMakeFiles/plast.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp [ 7%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o -c 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-I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIterator.cpp [ 8%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/BasicAlgoIndexator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/BasicAlgoIndexator.cpp [ 8%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIteratorCached.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp: In member function 'void algo::hits::gapped::SmallGapHitIteratorSSE8::computeScores(size_t, const database::LETTER*, const database::LETTER*, int*)': /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:302:17: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 302 | vgap_extend = _mm_set1_epi16 (-_parameters->extendGapCost); | ^ [ 8%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapExtendHitIterator.cpp [ 9%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIterator.cpp [ 9%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 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CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp [ 10%] Building CXX object CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -MF CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o.d -o CMakeFiles/plast.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp [ 10%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DatabasesProvider.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/DatabasesProvider.cpp [ 10%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/Statistics.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/Statistics.cpp [ 11%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/DefaultAlgoConfig.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/core/impl/DefaultAlgoConfig.cpp [ 12%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp [ 12%] Building CXX object CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -MF CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o.d -o CMakeFiles/plast.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsSpouge.cpp [ 12%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/AbstractAlignmentContainer.cpp [ 13%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/Alignment.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/Alignment.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp: In member function 'virtual void algo::hits::ungapped::UngapHitIteratorSSE8::iterateMethod(algo::hits::Hit*)': /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp:166:23: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 166 | vMaxScore = _mm_setzero_si128 (); | ^ /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp: In member function 'virtual void algo::hits::ungapped::UngapHitIteratorSSE16::iterateMethod(algo::hits::Hit*)': /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp:179:23: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 179 | vMaxScore = _mm_set1_epi8 (0); | ^ [ 13%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/AlignmentContainerFactory.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp: In member function 'double statistics::impl::GlobalParametersPlastn::karlinLHtoK(Blast_ScoreFreq*, double, double)': /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 415 | register double innerSum; | ^~~~~~~~ [ 13%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o -MF CMakeFiles/plast.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o.d -o CMakeFiles/plast.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/BasicAlignmentContainer.cpp [ 14%] Building CXX object CMakeFiles/plast.dir/src/alignment/core/impl/HspContainer.cpp.o /usr/bin/c++ -D__LINUX__ 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CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp [ 28%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/common/AbstractPipeHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/common/AbstractPipeHitIterator.cpp [ 29%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/CompositionHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/CompositionHitIterator.cpp [ 29%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 30%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp [ 30%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const std::string&)': /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function 'static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const std::string&)': /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 30%] Building CXX object CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/Sequence.cpp [ 31%] Building CXX object CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/SequenceTokenizer.cpp [ 31%] Building CXX object CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o -MF CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o.d -o CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/StringSequenceIterator.cpp [ 31%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/FullGapHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/FullGapHitIterator.cpp [ 31%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/CommandDispatcher.cpp [ 32%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/ConfigFileProperties.cpp [ 32%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/DirectoryIterator.cpp [ 32%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/FileLineIterator.cpp [ 33%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIterator.cpp [ 34%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/Observer.cpp [ 34%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/Property.cpp [ 35%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp [ 35%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/TokenizerIterator.cpp [ 35%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/WrapperIterator.cpp [ 36%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -MF CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o.d -o CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/XmlReader.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor 'dp::impl::SystemCommand::~SystemCommand()': /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ [ 36%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorNull.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIteratorNull.cpp [ 36%] Building CXX object CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/AbstractDatabaseIndex.cpp [ 36%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseIndex.cpp [ 37%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseIndexHash.cpp [ 37%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndex.cpp [ 37%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -MF CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o.d -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndexOptim.cpp [ 37%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp [ 38%] Building C object CMakeFiles/plast.dir/src/index/impl/retrievall.c.o /usr/bin/cc -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/plast.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/retrievall.c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:16: warning: 'get_bits_value' is static but used in inline function 'get_packed_value' which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ [ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/hsp/AlignmentGeneratorCmd.cpp [ 39%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspExtensionCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/hsp/HspExtensionCmd.cpp [ 39%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/core/PlastCmd.cpp [ 39%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp [ 40%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/Helper.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/Helper.cpp [ 40%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/Wrapper.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/Wrapper.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp: In member function 'void algo::hits::gapped::SmallGapHitIteratorSSE8::computeScores(size_t, const database::LETTER*, const database::LETTER*, int*)': /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/gap/SmallGapHitIteratorSSE8.cpp:302:17: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 302 | vgap_extend = _mm_set1_epi16 (-_parameters->extendGapCost); | ^ [ 41%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp [ 41%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/hsp/HspGeneratorCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/hsp/HspGeneratorCmd.cpp [ 41%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp [ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIterator.cpp [ 42%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 42%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/seed/SeedHitIteratorCached.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/seed/SeedHitIteratorCached.cpp [ 43%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 43%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp [ 43%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 44%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp [ 44%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp [ 44%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapExtendHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapExtendHitIterator.cpp [ 44%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:50: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 45%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp [ 45%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ [ 46%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIterator.cpp [ 46%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp [ 47%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp [ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorNull.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorNull.cpp [ 47%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp: In member function 'void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:33: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:39: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 48%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp [ 48%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp [ 48%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp [ 48%] Building CXX object CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp [ 49%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp [ 50%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp [ 50%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/Statistics.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/Statistics.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In destructor 'virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", | ~~^ | | | long int | %d 163 | i, | ~ | | | size_t {aka unsigned int} /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In member function 'virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~^ | | | long int | %d 257 | _currentAlgo, | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} [ 50%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp [ 50%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp [ 51%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp [ 51%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp [ 52%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsMemory.cpp [ 52%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsMemoryFile.cpp [ 52%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp: In member function 'virtual void algo::hits::ungapped::UngapHitIteratorSSE16::iterateMethod(algo::hits::Hit*)': /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE16.cpp:179:23: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 179 | vMaxScore = _mm_set1_epi8 (0); | ^ /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsThread.cpp [ 53%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsTime.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()': /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp [ 54%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsMemory.cpp [ 54%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsMemoryFile.cpp [ 54%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsThread.cpp [ 55%] Building CXX object CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsTime.cpp [ 55%] Building CXX object CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o [ 55%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -MF CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o.d -o CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/ZlibFile.cpp /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedIterator.cpp [ 56%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedModel.cpp [ 56%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/BasicSeedModel.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp: In member function 'virtual void algo::hits::ungapped::UngapHitIteratorSSE8::iterateMethod(algo::hits::Hit*)': /build/reproducible-path/plast-2.3.2+dfsg/src/algo/hits/ungap/UngapHitIteratorSSE8.cpp:166:23: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 166 | vMaxScore = _mm_setzero_si128 (); | ^ [ 56%] Building CXX object CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -MF CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o.d -o CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp [ 57%] Building CXX object CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -MF CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o.d -o CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp [ 57%] Building C object CMakeFiles/plast.dir/src/seg/impl/dust.c.o /usr/bin/cc -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/dust.c.o -MF CMakeFiles/plast.dir/src/seg/impl/dust.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/dust.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/dust.c [ 57%] Building C object CMakeFiles/plast.dir/src/seg/impl/genwin.c.o /usr/bin/cc -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -MF CMakeFiles/plast.dir/src/seg/impl/genwin.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/genwin.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/genwin.c [ 58%] Building C object CMakeFiles/plast.dir/src/seg/impl/seg.c.o /usr/bin/cc -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/seg/impl/seg.c.o -MF CMakeFiles/plast.dir/src/seg/impl/seg.c.o.d -o CMakeFiles/plast.dir/src/seg/impl/seg.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/seg.c [ 58%] Building CXX object CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -MF CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o.d -o CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp [ 58%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsSpouge.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsSpouge.cpp [ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/algo/stats/impl/StatisticsPlastn.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp [ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AbstractAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/AbstractAlignmentContainer.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp: In member function 'void seed::impl::SubSeedModel::dump()': /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:21: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~~~~~ | | | | long int size_t {aka unsigned int} | %d /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:248:25: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 248 | printf ("[%ld->%d] ", j, _equivalenceTable[i][j] ); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d [ 60%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/Alignment.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/Alignment.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/Alignment.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/Alignment.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/Alignment.cpp [ 60%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/AlignmentContainerFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/AlignmentContainerFactory.cpp [ 60%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/BasicAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/BasicAlignmentContainer.cpp [ 61%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/HspContainer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/HspContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/HspContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/HspContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/HspContainer.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp: In function 'int main(int, char**)': /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp:120:104: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld cores available\n\n", | ~~^ | | | long int | %d ...... 126 | os::impl::DefaultFactory::thread().getNbCores() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | size_t {aka unsigned int} /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp: In member function 'double statistics::impl::GlobalParametersPlastn::karlinLHtoK(Blast_ScoreFreq*, double, double)': /build/reproducible-path/plast-2.3.2+dfsg/src/algo/stats/impl/StatisticsPlastn.cpp:415:25: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 415 | register double innerSum; | ^~~~~~~~ [ 61%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/ReaderAlignmentContainer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/core/impl/ReaderAlignmentContainer.cpp [ 61%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/core/impl/UngapAlignmentContainer.cpp.o.d -o 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CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/alignment/visitors/impl/FilterContainerVisitor.cpp make[4]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu' [ 67%] Building CXX object CMakeFiles/PlastLibrary.dir/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops 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-ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BlastdbSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BlastdbSequenceIterator.cpp [ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BufferedCachedSequenceDatabase.cpp [ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/BufferedSequenceDatabase.cpp [ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp [ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/DefaultAlphabet.cpp [ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp [ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const std::string&)': /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 200 | fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 211 | fread (&len, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 215 | fread (buffer, sizeof(char), len, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 231 | fread (&_totalSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 234 | fread (&_dataSize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 237 | fread (&_nbSequences, sizeof(u_int32_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 240 | fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 243 | fread (&_maxblocksize, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 247 | fread (&nbOffsets, sizeof(size_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 253 | fread (&offset, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function 'static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const std::string&)': /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 373 | u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp [ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 76%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp [ 76%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp [ 76%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/Sequence.cpp [ 77%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/SequenceTokenizer.cpp [ 77%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/database/impl/StringSequenceIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/database/impl/StringSequenceIterator.cpp [ 77%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/CommandDispatcher.cpp [ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/ConfigFileProperties.cpp [ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/DirectoryIterator.cpp [ 78%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/FileLineIterator.cpp [ 79%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Observer.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/Observer.cpp [ 79%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/Property.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/Property.cpp [ 80%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/SystemCommand.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp [ 80%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/TokenizerIterator.cpp [ 80%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/WrapperIterator.cpp [ 81%] Building CXX object CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/XmlReader.cpp [ 81%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/AbstractDatabaseIndex.cpp [ 81%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseIndex.cpp [ 82%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseIndexHash.cpp [ 82%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndex.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor 'dp::impl::SystemCommand::~SystemCommand()': /build/reproducible-path/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 119 | system (tmp); | ~~~~~~~^~~~~ [ 82%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndexOptim.cpp [ 83%] Building C object CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o [ 83%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -MF CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o.d -o CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/retrievall.c /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/core/PlastCmd.cpp [ 83%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp [ 84%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/Helper.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:16: warning: 'get_bits_value' is static but used in inline function 'get_packed_value' which is not static 1075 | return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); | ^~~~~~~~~~~~~~ [ 84%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include 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-Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp [ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp [ 85%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 86%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 86%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp [ 86%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp [ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp [ 87%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp [ 88%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp [ 88%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp [ 88%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] 316 | } | ^ [ 89%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp [ 89%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp: In member function 'std::string launcher::observers::AbstractProgressionObserver::getTimeString(u_int32_t)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp:201:50: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 201 | snprintf (buffer, sizeof(buffer), "%02ld:%02ld:%2.2f", h, m, (float)s/1000.0); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp: In member function 'void launcher::observers::BargraphObserver::fillTimeBuffer(u_int32_t, char*)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:27: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:33: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp:151:39: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 151 | sprintf (buffer, "%02ld:%02ld:%02ld", h, m, s); | ~~~~^ ~ | | | | long int size_t {aka unsigned int} | %02d [ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp [ 90%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp [ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp [ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp [ 91%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In destructor 'virtual launcher::observers::AlignmentProgressionObserver::~AlignmentProgressionObserver()': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:162:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 162 | fprintf (_file, "%ld %.3f %.6f %d %d %.6f %.6f %.6f\n", | ~~^ | | | long int | %d 163 | i, | ~ | | | size_t {aka unsigned int} /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In member function 'virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)': /build/reproducible-path/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:32: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 256 | fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", | ~~^ | | | long int | %d 257 | _currentAlgo, | ~~~~~~~~~~~~ | | | size_t {aka unsigned int} /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()': /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fgets (buffer, sizeof(buffer), file); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp [ 92%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp [ 92%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 42 | system (ss.str().c_str()); | ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 93%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsMemory.cpp [ 93%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsMemoryFile.cpp [ 93%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsThread.cpp [ 94%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/MacOsTime.cpp [ 94%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsFile.cpp [ 95%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsMemory.cpp [ 95%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsMemoryFile.cpp [ 95%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsThread.cpp [ 96%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o [ 96%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/WindowsTime.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/os/impl/ZlibFile.cpp [ 96%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedIterator.cpp [ 97%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/AbstractSeedModel.cpp [ 97%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/BasicSeedModel.cpp [ 97%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp [ 98%] Building CXX object CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/DustMasker.cpp [ 98%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/dust.c [ 98%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/genwin.c [ 99%] Building C object CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o /usr/bin/cc -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -MF CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o.d -o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/seg/impl/seg.c [ 99%] Building CXX object CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/reproducible-path/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -MD -MT CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -MF CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o.d -o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -c /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp: In member function 'void seed::impl::SubSeedModel::dump()': /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:21: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:243:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 243 | printf ("[%ld/%ld] ", i, _span); | ~~^ ~~~~~ | | | | long int size_t {aka unsigned int} | %d /build/reproducible-path/plast-2.3.2+dfsg/src/seed/impl/SubSeedModel.cpp:248:25: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 248 | printf ("[%ld->%d] ", j, _equivalenceTable[i][j] ); | ~~^ ~ | | | | long int size_t {aka unsigned int} | %d /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp: In function 'int main(int, char**)': /build/reproducible-path/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp:120:104: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 120 | fprintf (stdout, "%s %s\n - Build date: %s\n - OS: %s\n - Compiler: %s\n - Host CPU: %ld cores available\n\n", | ~~^ | | | long int | %d ...... 126 | os::impl::DefaultFactory::thread().getNbCores() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | size_t {aka unsigned int} [100%] Linking CXX shared library lib/None/libPlastLibrary.so /usr/bin/cmake -E cmake_link_script CMakeFiles/PlastLibrary.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 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CMakeFiles/PlastLibrary.dir/src/designpattern/impl/WrapperIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/XmlReader.cpp.o CMakeFiles/PlastLibrary.dir/src/index/impl/AbstractDatabaseIndex.cpp.o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndex.cpp.o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o CMakeFiles/PlastLibrary.dir/src/index/impl/retrievall.c.o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemoryFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsThread.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsTime.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemory.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsMemoryFile.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsThread.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/WindowsTime.cpp.o CMakeFiles/PlastLibrary.dir/src/os/impl/ZlibFile.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedIterator.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/AbstractSeedModel.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/BasicSeedModel.cpp.o CMakeFiles/PlastLibrary.dir/src/seed/impl/SubSeedModel.cpp.o CMakeFiles/PlastLibrary.dir/src/seg/impl/DustMasker.cpp.o CMakeFiles/PlastLibrary.dir/src/seg/impl/dust.c.o CMakeFiles/PlastLibrary.dir/src/seg/impl/genwin.c.o CMakeFiles/PlastLibrary.dir/src/seg/impl/seg.c.o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o make[4]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu' [100%] Built target PlastLibrary make[3]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg' set -e ; for SIMD in sse3 ; do \ if lscpu | grep -q ${SIMD} ; then \ scripts/test-plast.sh obj-${SIMD} ; fi ; \ done Start PLAST... obj-sse3/bin/None/plast -p plastp -i /build/reproducible-path/plast-2.3.2+dfsg/db/query.fa -d /build/reproducible-path/plast-2.3.2+dfsg/db/tursiops.fa -o obj-sse3/bin/None/out.txt *** SUCCESS: result file is: obj-sse3/bin/None/out.txt set -e ; for SIMD in sse2 sse ; do \ if lscpu | grep -q ${SIMD} ; then \ scripts/test-plast.sh obj-${SIMD} ; fi ; \ done Start PLAST... obj-sse2/bin/None/plast -p plastp -i /build/reproducible-path/plast-2.3.2+dfsg/db/query.fa -d /build/reproducible-path/plast-2.3.2+dfsg/db/tursiops.fa -o obj-sse2/bin/None/out.txt *** SUCCESS: result file is: obj-sse2/bin/None/out.txt Start PLAST... obj-sse/bin/None/plast -p plastp -i /build/reproducible-path/plast-2.3.2+dfsg/db/query.fa -d /build/reproducible-path/plast-2.3.2+dfsg/db/tursiops.fa -o obj-sse/bin/None/out.txt *** SUCCESS: result file is: obj-sse/bin/None/out.txt scripts/test-plast.sh Start PLAST... obj-i686-linux-gnu/bin/None/plast -p plastp -i /build/reproducible-path/plast-2.3.2+dfsg/db/query.fa -d /build/reproducible-path/plast-2.3.2+dfsg/db/tursiops.fa -o obj-i686-linux-gnu/bin/None/out.txt *** SUCCESS: result file is: obj-i686-linux-gnu/bin/None/out.txt make[1]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_installdirs -O--buildsystem=cmake debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg' echo "I: Nothing to do for arch:indep binary" I: Nothing to do for arch:indep binary make[1]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg' dh_auto_install -O--buildsystem=cmake -Nplast-example cd obj-i686-linux-gnu && make -j11 install DESTDIR=/build/reproducible-path/plast-2.3.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/plast-2.3.2+dfsg -B/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/TokenizerIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/DirectoryIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/IteratorGet.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Vectorterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Property.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/SystemCommand.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/CommandDispatcher.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/WrapperIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/EventCatch.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Observer.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ProductIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ListIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/XmlReader.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ConfigFileProperties.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/RangeIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/FileLineIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/IObserver.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/ICommand.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/Iterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/SmartPointer.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/IProperty.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/Option.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/OptionsParser.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/ObsfucatedString.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/PlastStringsRepository.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/obsfucation.h -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/CompleteSubjectDatabaseStats.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/Vector.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/types.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/PlastStrings.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/RangeTree.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/version.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/macros.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/AminoAcidDatabaseQuickReader.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/TruncatedSequenceIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReverseStrandSequenceIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/AbstractSequenceIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/DatabaseVisitorComment.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BufferedSequenceDatabase.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaSequenceOutput.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaDatabaseQuickReader.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaSequenceIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/StringSequenceIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BasicSequenceBuilder.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/SequenceTokenizer.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/CompositeSequenceDatabase.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbSequenceIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReadingFrameSequenceDatabase.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbFileIndexReader.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbAsn1HeaderDecoder.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BufferedCachedSequenceDatabase.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/DatabaseUtility.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReadingFrameSequenceIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbDatabaseQuickReader.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceBuilder.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IDatabaseQuickReader.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IWord.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceCache.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceDatabase.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IAlphabet.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequence.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/PlastnAlgoConfig.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DefaultAlgoEnvironment.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/BasicAlgoIndexator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DatabasesProvider.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/ScoreMatrix.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AbstractAlgorithm.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AlgorithmPlastn.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DefaultAlgoConfig.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AlgoIndexatorNucleotide.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoIndexator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoEvents.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IScoreMatrix.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IDatabasesProvider.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoParameters.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoEnvironment.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgorithm.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoConfig.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common/AbstractHitIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common/AbstractPipeHitIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorSSE8.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorNull.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/FullGapHitIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/CompositionHitIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorNull.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorSSE16.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorSSE8.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapExtendHitIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed/SeedHitIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed/SeedHitIteratorCached.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/api -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/api/IHitIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/HspGeneratorCmd.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/AlignmentGeneratorCmd.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/HspExtensionCmd.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/StatisticsPlastn.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/Statistics.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/StatisticsSpouge.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/api -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/api/IStatistics.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/tools -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.h -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.h -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/Helper.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.h -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.h -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/JniObsfucation.h -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.h -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.h -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/Wrapper.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoExecutionObserver.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/FileProgressionObserver.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoResultObserver.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AbstractProgressionObserver.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AbstractObserver.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoHitsResultObserver.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/BargraphObserver.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core/PlastOptionsParser.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core/PlastCmd.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxMemoryFile.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/CommonOsImpl.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxThread.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxTime.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsMemoryFile.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsTime.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsMemory.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/ZlibFile.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsFile.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxMemory.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsMemory.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsTime.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsFile.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsMemoryFile.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/LinuxFile.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/WindowsThread.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/TimeTools.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/DefaultOsFactory.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/impl/MacOsThread.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IResource.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/ITime.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IOsFactory.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IMemory.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IThread.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IMemoryFile.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/os/api/IFile.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seg -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl/DustMasker.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl/lnfac.pri -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api/genwin.h -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api/seg.h -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentOverlapCmd.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentSplitterBanded.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentSplitter.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/SemiGappedAlign.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentContainerShrinkCmd.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/SemiGappedAlignTraceback.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api/IAlignmentSplitter.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api/ISemiGappedAlign.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/MaxHitsPerQueryVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ReverseStrandVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/XmlOutputVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ShrinkContainerVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/RawOutputVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/OstreamVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/NucleotidConversionVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareContainerVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/HierarchyAlignmentVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/AdapterAlignmentVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/FilterContainerVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareResultVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/QueryReorderVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareResultQryVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/SortContainerVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ProxyVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/TabulatedOutputVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ModelBuilderVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ModifierContainerVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/AlignmentContainerFactory.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/UngapAlignmentContainer.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/BasicAlignmentContainer.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/ReaderAlignmentContainer.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/HspContainer.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/NullAlignmentContainer.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/AbstractAlignmentContainer.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainer.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IHspContainer.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerModel.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerVisitor.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerFactory.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/Alignment.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterOperator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterFactory.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AbstractAlignmentFilterFactory.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterXML.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/api -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/api/IAlignmentFilter.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/BasicSeedModel.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/AbstractSeedIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/AbstractSeedModel.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/impl/SubSeedModel.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeed.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeedModel.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/seed/api/ISeedIterator.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/retrievall.h -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/AbstractDatabaseIndex.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseNucleotidIndex.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseIndexHash.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseIndex.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseNucleotidIndexOptim.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api/IDatabaseIndex.hpp -- Installing: /build/reproducible-path/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api/IOccurrenceIterator.hpp make[1]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg/obj-i686-linux-gnu' debian/rules override_dh_install-arch make[1]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg' dh_install -a # install binary cp -a obj-i686-linux-gnu/bin/*/plast debian/plast/usr/lib/plast/bin/ set -e ; for SIMD in sse3 ; do \ cp -a obj-${SIMD}/bin/*/plast debian/plast/usr/lib/plast/bin/plast-${SIMD} ; \ done set -e ; for SIMD in sse2 sse ; do \ cp -a obj-${SIMD}/bin/*/plast debian/plast/usr/lib/plast/bin/plast-${SIMD} ; \ done # no need for the includes rm -rf debian/*/usr/include make[1]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg' dh_install -O--buildsystem=cmake -Nplast dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake debian/rules override_dh_gencontrol-arch make[1]: Entering directory '/build/reproducible-path/plast-2.3.2+dfsg' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.8.0-1), " dpkg-gencontrol: warning: Depends field of package plast: substitution variable ${java:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package plast: substitution variable ${java:Depends} used, but is not defined make[1]: Leaving directory '/build/reproducible-path/plast-2.3.2+dfsg' dh_gencontrol -O--buildsystem=cmake -Nplast dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'plast' in '../plast_2.3.2+dfsg-10_i386.deb'. dpkg-deb: building package 'plast-example' in '../plast-example_2.3.2+dfsg-10_all.deb'. dpkg-deb: building package 'plast-dbgsym' in '../plast-dbgsym_2.3.2+dfsg-10_i386.deb'. dpkg-genbuildinfo --build=binary -O../plast_2.3.2+dfsg-10_i386.buildinfo dpkg-genchanges --build=binary -O../plast_2.3.2+dfsg-10_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/22391 and its subdirectories I: Current time: Tue Apr 16 09:14:24 -12 2024 I: pbuilder-time-stamp: 1713302064 Tue Apr 16 21:14:26 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Tue Apr 16 21:14:26 UTC 2024 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Tue Apr 16 21:18:16 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. Tue Apr 16 21:18:17 UTC 2024 I: plast_2.3.2+dfsg-10_i386.changes: Format: 1.8 Date: Mon, 05 Dec 2022 18:19:37 +0100 Source: plast Binary: plast plast-dbgsym plast-example Architecture: i386 all Version: 2.3.2+dfsg-10 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: plast - Parallel Local Sequence Alignment Search Tool plast-example - Parallel Local Sequence Alignment Search Tool (example data) Changes: plast (2.3.2+dfsg-10) unstable; urgency=medium . * Fix watch file Checksums-Sha1: 9bb3ef3abba9ae468cb7ef68bfd362789ffe8837 19325856 plast-dbgsym_2.3.2+dfsg-10_i386.deb 437ee6d4a5a813964cfcc0030bf8bbc728f92691 6364244 plast-example_2.3.2+dfsg-10_all.deb 596f221e067d78be95d6bf9f18257fc2f4592be2 9800 plast_2.3.2+dfsg-10_i386.buildinfo 31f9b44019afa408080dabecf3a107af57149a89 1033200 plast_2.3.2+dfsg-10_i386.deb Checksums-Sha256: 7f7bb6283cd631f1bc7864525db2bed4932c884da16e17b0da49a3d8d450ac09 19325856 plast-dbgsym_2.3.2+dfsg-10_i386.deb 0db1d0f925f3b9005a6c1a453393840b4f0c383917e2e74df6fffcf96969f2ae 6364244 plast-example_2.3.2+dfsg-10_all.deb 87fcf1dac532e4e7b867ae42f05cce403dafc5ca34a46beb47f625648081a5c2 9800 plast_2.3.2+dfsg-10_i386.buildinfo 3c9fbab103c140b951007fefdb5cf73a12653395c719d382ace81606296e7fd4 1033200 plast_2.3.2+dfsg-10_i386.deb Files: 05c8471ba125fda8ef300739a12fb53f 19325856 debug optional plast-dbgsym_2.3.2+dfsg-10_i386.deb 324d1c0d5a4d00adcb560fafbb982f15 6364244 science optional plast-example_2.3.2+dfsg-10_all.deb 8b668f33c438d8414cb28166acc01a50 9800 science optional plast_2.3.2+dfsg-10_i386.buildinfo c73e8544903547fffb99555661544e45 1033200 science optional plast_2.3.2+dfsg-10_i386.deb Tue Apr 16 21:18:18 UTC 2024 I: diffoscope 264 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_12-7667.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ZXiXogRN/plast_2.3.2+dfsg-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ZXiXogRN/plast_2.3.2+dfsg-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ZXiXogRN/plast_2.3.2+dfsg-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ZXiXogRN/b1/plast_2.3.2+dfsg-10_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.ZXiXogRN/b2/plast_2.3.2+dfsg-10_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.618s) 0.617s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.290s) 0.290s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 917ms CPU time consumed: 917ms Tue Apr 16 21:18:20 UTC 2024 I: diffoscope 264 found no differences in the changes files, and a .buildinfo file also exists. Tue Apr 16 21:18:20 UTC 2024 I: plast from trixie built successfully and reproducibly on i386. Tue Apr 16 21:18:21 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Apr 16 21:18:21 UTC 2024 I: Submitting 12K b1/plast_2.3.2+dfsg-10_i386.buildinfo.asc Tue Apr 16 21:18:22 UTC 2024 I: Submitting 12K b2/plast_2.3.2+dfsg-10_i386.buildinfo.asc Tue Apr 16 21:18:24 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Apr 16 21:18:24 UTC 2024 I: Done submitting .buildinfo files. Tue Apr 16 21:18:24 UTC 2024 I: Removing signed plast_2.3.2+dfsg-10_i386.buildinfo.asc files: removed './b1/plast_2.3.2+dfsg-10_i386.buildinfo.asc' removed './b2/plast_2.3.2+dfsg-10_i386.buildinfo.asc'