Fri May 17 08:47:05 UTC 2024 I: starting to build pinfish/trixie/i386 on jenkins on '2024-05-17 08:46' Fri May 17 08:47:05 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_12/11483/console.log Fri May 17 08:47:05 UTC 2024 I: Downloading source for trixie/pinfish=0.1.0+ds-4 --2024-05-17 08:47:05-- http://deb.debian.org/debian/pool/main/p/pinfish/pinfish_0.1.0%2bds-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2529 (2.5K) [text/prs.lines.tag] Saving to: ‘pinfish_0.1.0+ds-4.dsc’ 0K .. 100% 289M=0s 2024-05-17 08:47:05 (289 MB/s) - ‘pinfish_0.1.0+ds-4.dsc’ saved [2529/2529] Fri May 17 08:47:05 UTC 2024 I: pinfish_0.1.0+ds-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pinfish Binary: pinfish, pinfish-examples Architecture: any all Version: 0.1.0+ds-4 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra Homepage: https://github.com/nanoporetech/pinfish Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/pinfish Vcs-Git: https://salsa.debian.org/med-team/pinfish.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-google-uuid-dev, samtools Package-List: pinfish deb science optional arch=any pinfish-examples deb science optional arch=all Checksums-Sha1: 72cd9579ffc7d2edd6ad5429c3e934fbe3302746 68559048 pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz f60646b7255e280e7c3c5487f29707c8de208970 5054956 pinfish_0.1.0+ds.orig.tar.xz bbecc63cd114aa32541947d5c24458adc07b30fb 6600 pinfish_0.1.0+ds-4.debian.tar.xz Checksums-Sha256: 40957e398ab9bebdc89fe69dbef1c816da544e69a6aeed9c04371430f61f53bb 68559048 pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz c8213acc3f88d9e1294b9f9014a28b8fd410ebe0aab4793c7bb7263e7e465e4d 5054956 pinfish_0.1.0+ds.orig.tar.xz 244fe376c04deed5bbf98824576c5cfc7d2b819e1a7a595bf90207573681312d 6600 pinfish_0.1.0+ds-4.debian.tar.xz Files: f76133bed3fba383e81cc39b73cccdb1 68559048 pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz 70d87d84ead55e6112f068425ba60c56 5054956 pinfish_0.1.0+ds.orig.tar.xz 001d865b95bc9df10f0a0b25e5bda457 6600 pinfish_0.1.0+ds-4.debian.tar.xz Go-Import-Path: github.com/nanoporetech/pinfish -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWg8XkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHtyQ//bm6KvCO0/OxjjN4EE1tiUEJRQgj4p8TL WAI4JLFdz35OP8eopj4ABpao7I9ZCguAIwqXSRVkBw9XvwyUeK230J/+OlX9C674 ViHVFEjxzH0y2rEiKn2T8P4A/esuU5GE8p8hP2okqVwc4+T/hbYEqV5N6KfEopYs nI+WC/3cqTWSKxe/0UnmpNUqUe2FCdRQrj05ZfR6nIvtUghlZNKWIh7Jouk5heKp I5hXk3Vlm0pL+LvqaMjyWfLB8DUGp1l7kunqGKp0fp0pEm4Rvl93Spzrfdi7FRJv OCYV4a0VtTiWH+b3Ic7487dDy0Ibp+4f+kviCTp/lc5DlSNoXFzWzkYBvFZT1j5y gN2X0wV3kN0WHTJ5FEtvhBLCRS0T1Mjzdr5gmg/nrKnbUdEpQmSAuv7Z5i+Tlfqn 60POIAp5MPbuorpxNWI1y6v1nR/8wdVIIMHZTHeedHv8hDaY2EY62G7Cw3t0sJH8 lh6xgC+WpclzvAyCUwxL3hB8XXlAMp6OJ/QCsy2c7ozdMR0IK7aB/L4XX6MMaQHh 4gO6SBzUC50PAUkwHx3/UioBf8yq6O3wgwfNB7z4uqBKLo4P1ZFl7rvKAXsoOwo5 2cjKfoT0S5YZqtZsJcfhiop5j4wFkQbsRCjfih9jbjT5nO+xRnXeoWq/kC+Pc/4O LxWkiVagcFc= =HpBN -----END PGP SIGNATURE----- Fri May 17 08:47:05 UTC 2024 I: Checking whether the package is not for us Fri May 17 08:47:05 UTC 2024 I: Starting 1st build on remote node ionos12-i386.debian.net. Fri May 17 08:47:05 UTC 2024 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Fri May 17 08:50:11 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu May 16 20:47:09 -12 2024 I: pbuilder-time-stamp: 1715935629 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [pinfish_0.1.0+ds-4.dsc] I: copying [./pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz] I: copying [./pinfish_0.1.0+ds.orig.tar.xz] I: copying [./pinfish_0.1.0+ds-4.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Jan 12 07:59:53 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pinfish_0.1.0+ds-4.dsc: no acceptable signature found dpkg-source: info: extracting pinfish in pinfish-0.1.0+ds dpkg-source: info: unpacking pinfish_0.1.0+ds.orig.tar.xz dpkg-source: info: unpacking pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz dpkg-source: info: unpacking pinfish_0.1.0+ds-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-gonum-stat-usage.patch dpkg-source: info: applying do-not-overflow-int.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/60953/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='46bd7b1bb9f74ac7acb0564e6ca9342a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='60953' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gwjzkalh/pbuilderrc_Sref --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gwjzkalh/b1 --logfile b1/build.log pinfish_0.1.0+ds-4.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 16 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/60953/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-google-uuid-dev, samtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19684 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-golang; however: Package dh-golang is not installed. pbuilder-satisfydepends-dummy depends on golang-any; however: Package golang-any is not installed. pbuilder-satisfydepends-dummy depends on golang-github-biogo-biogo-dev; however: Package golang-github-biogo-biogo-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-github-biogo-hts-dev; however: Package golang-github-biogo-hts-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-github-google-uuid-dev; however: Package golang-github-google-uuid-dev is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-golang{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} golang-1.22-go{a} golang-1.22-src{a} golang-any{a} golang-github-biogo-biogo-dev{a} golang-github-biogo-hts-dev{a} golang-github-creack-pty-dev{a} golang-github-google-uuid-dev{a} golang-github-kr-pretty-dev{a} golang-github-kr-text-dev{a} golang-github-rogpeppe-go-internal-dev{a} golang-github-ulikunitz-xz-dev{a} golang-github-yuin-goldmark-dev{a} golang-go{a} golang-golang-x-crypto-dev{a} golang-golang-x-mod-dev{a} golang-golang-x-net-dev{a} golang-golang-x-sync-dev{a} golang-golang-x-sys-dev{a} golang-golang-x-term-dev{a} golang-golang-x-text-dev{a} golang-golang-x-tools-dev{a} golang-gopkg-check.v1-dev{a} golang-src{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpsl5t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} samtools{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx pkg-config pkgconf publicsuffix wget 0 packages upgraded, 74 newly installed, 0 to remove and 0 not upgraded. Need to get 74.4 MB of archives. After unpacking 383 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3 [42.9 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-4 [1194 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40-8 [97.2 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.1-1 [1421 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-1+b1 [194 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b3 [727 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 dh-golang all 1.62 [24.7 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 golang-1.22-src all 1.22.3-1 [18.8 MB] Get: 33 http://deb.debian.org/debian trixie/main i386 golang-1.22-go i386 1.22.3-1 [22.8 MB] Get: 34 http://deb.debian.org/debian trixie/main i386 golang-src all 2:1.22~3 [5020 B] Get: 35 http://deb.debian.org/debian trixie/main i386 golang-go i386 2:1.22~3 [44.2 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 golang-any i386 2:1.22~3 [5104 B] Get: 37 http://deb.debian.org/debian trixie/main i386 golang-github-ulikunitz-xz-dev all 0.5.6-2 [352 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 golang-github-biogo-hts-dev all 1.4.4+dfsg1-1 [319 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 golang-github-creack-pty-dev all 1.1.21-1 [13.0 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 golang-github-kr-text-dev all 0.2.0-2 [10.2 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 golang-golang-x-mod-dev all 0.17.0-1 [103 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 golang-golang-x-sys-dev all 0.19.0-1 [402 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 golang-github-yuin-goldmark-dev all 1.7.1-1 [113 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 golang-golang-x-term-dev all 0.19.0-1 [14.7 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 golang-golang-x-text-dev all 0.14.0-2 [4001 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 golang-golang-x-crypto-dev all 1:0.22.0-1 [1672 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 golang-golang-x-net-dev all 1:0.24.0+dfsg-1 [895 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 golang-golang-x-sync-dev all 0.7.0-1 [19.0 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 golang-golang-x-tools-dev all 1:0.19.0+ds-1 [1566 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 golang-github-rogpeppe-go-internal-dev all 1.12.0-3 [103 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 golang-github-kr-pretty-dev all 0.3.1-1 [11.9 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 golang-gopkg-check.v1-dev all 0.0+git20200902.038fdea-1 [32.1 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 golang-github-biogo-biogo-dev all 1.0.4-1 [189 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 golang-github-google-uuid-dev all 1.6.0-1 [20.6 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b3 [314 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.1~rc2-1 [22.8 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.20.1-6+b1 [36.1 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.20.1-6+b1 [83.2 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get: 60 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.20.1-6+b1 [360 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.20.1-6+b1 [145 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-6 [20.5 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-6 [60.6 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.17+dfsg-1 [198 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.61.0-1+b1 [84.0 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.0-4.1+b2 [225 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libcurl3t64-gnutls i386 8.7.1-5 [468 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.20-1 [46.9 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 libhtscodecs2 i386 1.6.0-1+b1 [68.5 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 libhts3t64 i386 1.19+ds-1.1+b1 [491 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libncurses6 i386 6.5-2 [111 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 samtools i386 1.19.2-1+b1 [682 kB] Fetched 74.4 MB in 1s (63.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19684 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-4_i386.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40-8_i386.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.7-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-1_i386.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../22-libelf1t64_0.191-1+b1_i386.deb ... Unpacking libelf1t64:i386 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../24-libicu72_72.1-4+b1_i386.deb ... Unpacking libicu72:i386 (72.1-4+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b3_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_i386.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package dh-golang. Preparing to unpack .../30-dh-golang_1.62_all.deb ... Unpacking dh-golang (1.62) ... Selecting previously unselected package golang-1.22-src. Preparing to unpack .../31-golang-1.22-src_1.22.3-1_all.deb ... Unpacking golang-1.22-src (1.22.3-1) ... Selecting previously unselected package golang-1.22-go. Preparing to unpack .../32-golang-1.22-go_1.22.3-1_i386.deb ... Unpacking golang-1.22-go (1.22.3-1) ... Selecting previously unselected package golang-src. Preparing to unpack .../33-golang-src_2%3a1.22~3_all.deb ... Unpacking golang-src (2:1.22~3) ... Selecting previously unselected package golang-go:i386. Preparing to unpack .../34-golang-go_2%3a1.22~3_i386.deb ... Unpacking golang-go:i386 (2:1.22~3) ... Selecting previously unselected package golang-any:i386. Preparing to unpack .../35-golang-any_2%3a1.22~3_i386.deb ... Unpacking golang-any:i386 (2:1.22~3) ... Selecting previously unselected package golang-github-ulikunitz-xz-dev. Preparing to unpack .../36-golang-github-ulikunitz-xz-dev_0.5.6-2_all.deb ... Unpacking golang-github-ulikunitz-xz-dev (0.5.6-2) ... Selecting previously unselected package golang-github-biogo-hts-dev. Preparing to unpack .../37-golang-github-biogo-hts-dev_1.4.4+dfsg1-1_all.deb ... Unpacking golang-github-biogo-hts-dev (1.4.4+dfsg1-1) ... Selecting previously unselected package golang-github-creack-pty-dev. Preparing to unpack .../38-golang-github-creack-pty-dev_1.1.21-1_all.deb ... Unpacking golang-github-creack-pty-dev (1.1.21-1) ... Selecting previously unselected package golang-github-kr-text-dev. Preparing to unpack .../39-golang-github-kr-text-dev_0.2.0-2_all.deb ... Unpacking golang-github-kr-text-dev (0.2.0-2) ... Selecting previously unselected package golang-golang-x-mod-dev. Preparing to unpack .../40-golang-golang-x-mod-dev_0.17.0-1_all.deb ... Unpacking golang-golang-x-mod-dev (0.17.0-1) ... Selecting previously unselected package golang-golang-x-sys-dev. Preparing to unpack .../41-golang-golang-x-sys-dev_0.19.0-1_all.deb ... Unpacking golang-golang-x-sys-dev (0.19.0-1) ... Selecting previously unselected package golang-github-yuin-goldmark-dev. Preparing to unpack .../42-golang-github-yuin-goldmark-dev_1.7.1-1_all.deb ... Unpacking golang-github-yuin-goldmark-dev (1.7.1-1) ... Selecting previously unselected package golang-golang-x-term-dev. Preparing to unpack .../43-golang-golang-x-term-dev_0.19.0-1_all.deb ... Unpacking golang-golang-x-term-dev (0.19.0-1) ... Selecting previously unselected package golang-golang-x-text-dev. Preparing to unpack .../44-golang-golang-x-text-dev_0.14.0-2_all.deb ... Unpacking golang-golang-x-text-dev (0.14.0-2) ... Selecting previously unselected package golang-golang-x-crypto-dev. Preparing to unpack .../45-golang-golang-x-crypto-dev_1%3a0.22.0-1_all.deb ... Unpacking golang-golang-x-crypto-dev (1:0.22.0-1) ... Selecting previously unselected package golang-golang-x-net-dev. Preparing to unpack .../46-golang-golang-x-net-dev_1%3a0.24.0+dfsg-1_all.deb ... Unpacking golang-golang-x-net-dev (1:0.24.0+dfsg-1) ... Selecting previously unselected package golang-golang-x-sync-dev. Preparing to unpack .../47-golang-golang-x-sync-dev_0.7.0-1_all.deb ... Unpacking golang-golang-x-sync-dev (0.7.0-1) ... Selecting previously unselected package golang-golang-x-tools-dev. Preparing to unpack .../48-golang-golang-x-tools-dev_1%3a0.19.0+ds-1_all.deb ... Unpacking golang-golang-x-tools-dev (1:0.19.0+ds-1) ... Selecting previously unselected package golang-github-rogpeppe-go-internal-dev. Preparing to unpack .../49-golang-github-rogpeppe-go-internal-dev_1.12.0-3_all.deb ... Unpacking golang-github-rogpeppe-go-internal-dev (1.12.0-3) ... Selecting previously unselected package golang-github-kr-pretty-dev. Preparing to unpack .../50-golang-github-kr-pretty-dev_0.3.1-1_all.deb ... Unpacking golang-github-kr-pretty-dev (0.3.1-1) ... Selecting previously unselected package golang-gopkg-check.v1-dev. Preparing to unpack .../51-golang-gopkg-check.v1-dev_0.0+git20200902.038fdea-1_all.deb ... Unpacking golang-gopkg-check.v1-dev (0.0+git20200902.038fdea-1) ... Selecting previously unselected package golang-github-biogo-biogo-dev. Preparing to unpack .../52-golang-github-biogo-biogo-dev_1.0.4-1_all.deb ... Unpacking golang-github-biogo-biogo-dev (1.0.4-1) ... Selecting previously unselected package golang-github-google-uuid-dev. Preparing to unpack .../53-golang-github-google-uuid-dev_1.6.0-1_all.deb ... Unpacking golang-github-google-uuid-dev (1.6.0-1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../54-libbrotli1_1.1.0-2+b3_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b3) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../55-libcom-err2_1.47.1~rc2-1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1~rc2-1) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../56-libkrb5support0_1.20.1-6+b1_i386.deb ... Unpacking libkrb5support0:i386 (1.20.1-6+b1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../57-libk5crypto3_1.20.1-6+b1_i386.deb ... Unpacking libk5crypto3:i386 (1.20.1-6+b1) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../58-libkeyutils1_1.6.3-3_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../59-libkrb5-3_1.20.1-6+b1_i386.deb ... Unpacking libkrb5-3:i386 (1.20.1-6+b1) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../60-libgssapi-krb5-2_1.20.1-6+b1_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.20.1-6+b1) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../61-libsasl2-modules-db_2.1.28+dfsg1-6_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-6) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../62-libsasl2-2_2.1.28+dfsg1-6_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg1-6) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../63-libldap-2.5-0_2.5.17+dfsg-1_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.17+dfsg-1) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../64-libnghttp2-14_1.61.0-1+b1_i386.deb ... Unpacking libnghttp2-14:i386 (1.61.0-1+b1) ... Selecting previously unselected package libpsl5t64:i386. Preparing to unpack .../65-libpsl5t64_0.21.2-1.1_i386.deb ... Unpacking libpsl5t64:i386 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../66-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:i386. Preparing to unpack .../67-libssh2-1t64_1.11.0-4.1+b2_i386.deb ... Unpacking libssh2-1t64:i386 (1.11.0-4.1+b2) ... Selecting previously unselected package libcurl3t64-gnutls:i386. Preparing to unpack .../68-libcurl3t64-gnutls_8.7.1-5_i386.deb ... Unpacking libcurl3t64-gnutls:i386 (8.7.1-5) ... Selecting previously unselected package libdeflate0:i386. Preparing to unpack .../69-libdeflate0_1.20-1_i386.deb ... Unpacking libdeflate0:i386 (1.20-1) ... Selecting previously unselected package libhtscodecs2:i386. Preparing to unpack .../70-libhtscodecs2_1.6.0-1+b1_i386.deb ... Unpacking libhtscodecs2:i386 (1.6.0-1+b1) ... Selecting previously unselected package libhts3t64:i386. Preparing to unpack .../71-libhts3t64_1.19+ds-1.1+b1_i386.deb ... Unpacking libhts3t64:i386 (1.19+ds-1.1+b1) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../72-libncurses6_6.5-2_i386.deb ... Unpacking libncurses6:i386 (6.5-2) ... Selecting previously unselected package samtools. Preparing to unpack .../73-samtools_1.19.2-1+b1_i386.deb ... Unpacking samtools (1.19.2-1+b1) ... Setting up libhtscodecs2:i386 (1.6.0-1+b1) ... Setting up libpipeline1:i386 (1.5.7-2) ... Setting up libkeyutils1:i386 (1.6.3-3) ... Setting up libicu72:i386 (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up golang-github-creack-pty-dev (1.1.21-1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:i386 (1.1.0-2+b3) ... Setting up golang-golang-x-sys-dev (0.19.0-1) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up libpsl5t64:i386 (0.21.2-1.1) ... Setting up libnghttp2-14:i386 (1.61.0-1+b1) ... Setting up libdeflate0:i386 (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up golang-golang-x-term-dev (0.19.0-1) ... Setting up libcom-err2:i386 (1.47.1~rc2-1) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:i386 (0.191-1+b1) ... Setting up libkrb5support0:i386 (1.20.1-6+b1) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-6) ... Setting up autotools-dev (20220109.1) ... Setting up golang-github-kr-text-dev (0.2.0-2) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up golang-github-yuin-goldmark-dev (1.7.1-1) ... Setting up libncurses6:i386 (6.5-2) ... Setting up golang-1.22-src (1.22.3-1) ... Setting up golang-golang-x-sync-dev (0.7.0-1) ... Setting up golang-golang-x-mod-dev (0.17.0-1) ... Setting up autopoint (0.21-14) ... Setting up libk5crypto3:i386 (1.20.1-6+b1) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-6) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up golang-golang-x-text-dev (0.14.0-2) ... Setting up golang-github-google-uuid-dev (1.6.0-1) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up golang-golang-x-crypto-dev (1:0.22.0-1) ... Setting up libkrb5-3:i386 (1.20.1-6+b1) ... Setting up libssh2-1t64:i386 (1.11.0-4.1+b2) ... Setting up golang-src (2:1.22~3) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b3) ... Setting up golang-github-ulikunitz-xz-dev (0.5.6-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up golang-1.22-go (1.22.3-1) ... Setting up libldap-2.5-0:i386 (2.5.17+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:i386 (1.20.1-6+b1) ... Setting up golang-github-biogo-hts-dev (1.4.4+dfsg1-1) ... Setting up golang-golang-x-net-dev (1:0.24.0+dfsg-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up golang-go:i386 (2:1.22~3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3t64-gnutls:i386 (8.7.1-5) ... Setting up golang-golang-x-tools-dev (1:0.19.0+ds-1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up golang-any:i386 (2:1.22~3) ... Setting up libhts3t64:i386 (1.19+ds-1.1+b1) ... Setting up golang-github-rogpeppe-go-internal-dev (1.12.0-3) ... Setting up golang-github-kr-pretty-dev (0.3.1-1) ... Setting up debhelper (13.15.3) ... Setting up golang-gopkg-check.v1-dev (0.0+git20200902.038fdea-1) ... Setting up samtools (1.19.2-1+b1) ... Setting up golang-github-biogo-biogo-dev (1.0.4-1) ... Setting up dh-golang (1.62) ... Processing triggers for libc-bin (2.38-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pinfish-0.1.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pinfish_0.1.0+ds-4_source.changes dpkg-buildpackage: info: source package pinfish dpkg-buildpackage: info: source version 0.1.0+ds-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --builddirectory=_build --buildsystem=golang --with=golang debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pinfish-0.1.0+ds' dh_auto_clean find . -name "*.bam" -delete make[1]: Leaving directory '/build/reproducible-path/pinfish-0.1.0+ds' dh_autoreconf_clean -O--builddirectory=_build -O--buildsystem=golang dh_clean -O--builddirectory=_build -O--buildsystem=golang debian/rules binary dh binary --builddirectory=_build --buildsystem=golang --with=golang dh_update_autotools_config -O--builddirectory=_build -O--buildsystem=golang dh_autoreconf -O--builddirectory=_build -O--buildsystem=golang dh_auto_configure -O--builddirectory=_build -O--buildsystem=golang dh_auto_build -O--builddirectory=_build -O--buildsystem=golang cd _build && go install -trimpath -v -p 11 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff internal/coverage/rtcov internal/godebugs internal/goarch internal/unsafeheader internal/goexperiment internal/cpu runtime/internal/syscall internal/race internal/goos runtime/internal/atomic sync/atomic unicode/utf8 unicode internal/chacha8rand internal/abi runtime/internal/math encoding runtime/internal/sys internal/itoa math/bits cmp crypto/internal/alias crypto/internal/boring/sig unicode/utf16 internal/nettrace log/internal internal/bytealg slices math runtime internal/reflectlite crypto/subtle sync internal/testlog internal/singleflight internal/bisect runtime/cgo errors sort internal/godebug internal/safefilepath io internal/oserror vendor/golang.org/x/net/dns/dnsmessage path strconv syscall math/rand internal/intern bytes strings crypto/internal/randutil hash text/tabwriter hash/crc32 container/heap crypto reflect net/netip github.com/biogo/biogo/feat bufio github.com/biogo/biogo/io/featio github.com/biogo/biogo/feat/gene internal/syscall/unix internal/syscall/execenv time internal/fmtsort encoding/binary context io/fs internal/poll crypto/md5 encoding/base64 crypto/cipher os crypto/internal/boring crypto/sha1 io/ioutil fmt path/filepath net os/exec database/sql/driver github.com/biogo/biogo/alphabet encoding/csv flag log net/url encoding/hex compress/flate encoding/json math/big github.com/biogo/biogo/seq github.com/biogo/biogo/feat/genome github.com/biogo/biogo/io/seqio github.com/biogo/biogo/seq/linear compress/gzip github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/io/seqio/fastq github.com/biogo/hts/bgzf runtime/pprof github.com/biogo/biogo/io/featio/gff github.com/biogo/hts/bgzf/index github.com/biogo/hts/internal github.com/biogo/hts/sam crypto/rand github.com/biogo/hts/bam github.com/nanoporetech/pinfish/spliced_bam2gff github.com/nanoporetech/pinfish/polish_clusters github.com/google/uuid github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pinfish-0.1.0+ds' dh_auto_test cd _build && go test -vet=off -v -p 11 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff ? github.com/nanoporetech/pinfish/cluster_gff [no test files] ? github.com/nanoporetech/pinfish/collapse_partials [no test files] ? github.com/nanoporetech/pinfish/polish_clusters [no test files] ? github.com/nanoporetech/pinfish/spliced_bam2gff [no test files] cat debian-tests-data/sirv_e0_sorted.sam| samtools view -Sb - > polish_clusters/test_data/sirv_e0_sorted.bam cat debian-tests-data/sirv_errors_gmap.sam| samtools view -Sb - > spliced_bam2gff/test_data/sirv_errors_gmap.bam cat debian-tests-data/sirv_no_errors_gmap.sam| samtools view -Sb - > spliced_bam2gff/test_data/sirv_no_errors_gmap.bam cat debian-tests-data/sirv_simulated.sam| samtools view -Sb - > spliced_bam2gff/test_data/sirv_simulated.bam make[1]: Leaving directory '/build/reproducible-path/pinfish-0.1.0+ds' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=_build -O--buildsystem=golang dh_prep -O--builddirectory=_build -O--buildsystem=golang debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/pinfish-0.1.0+ds' dh_auto_install -- --no-source cd _build && mkdir -p /build/reproducible-path/pinfish-0.1.0\+ds/debian/tmp/usr cd _build && cp -r bin /build/reproducible-path/pinfish-0.1.0\+ds/debian/tmp/usr make[1]: Leaving directory '/build/reproducible-path/pinfish-0.1.0+ds' dh_install -O--builddirectory=_build -O--buildsystem=golang dh_installdocs -O--builddirectory=_build -O--buildsystem=golang dh_installchangelogs -O--builddirectory=_build -O--buildsystem=golang dh_installman -O--builddirectory=_build -O--buildsystem=golang dh_installsystemduser -O--builddirectory=_build -O--buildsystem=golang dh_perl -O--builddirectory=_build -O--buildsystem=golang dh_link -O--builddirectory=_build -O--buildsystem=golang dh_strip_nondeterminism -O--builddirectory=_build -O--buildsystem=golang dh_compress -O--builddirectory=_build -O--buildsystem=golang dh_fixperms -O--builddirectory=_build -O--buildsystem=golang dh_missing -O--builddirectory=_build -O--buildsystem=golang dh_strip -a -O--builddirectory=_build -O--buildsystem=golang dh_strip: warning: Could not find the BuildID in debian/pinfish/usr/bin/spliced_bam2gff dh_strip: warning: Could not find the BuildID in debian/pinfish/usr/bin/cluster_gff dh_strip: warning: Could not find the BuildID in debian/pinfish/usr/bin/collapse_partials dh_strip: warning: Could not find the BuildID in debian/pinfish/usr/bin/polish_clusters dh_makeshlibs -a -O--builddirectory=_build -O--buildsystem=golang dh_shlibdeps -a -O--builddirectory=_build -O--buildsystem=golang dh_installdeb -O--builddirectory=_build -O--buildsystem=golang dh_golang -O--builddirectory=_build -O--buildsystem=golang dh_gencontrol -O--builddirectory=_build -O--buildsystem=golang dpkg-gencontrol: warning: Depends field of package pinfish-examples: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package pinfish: substitution variable ${misc:Static-Built-Using} unused, but is defined dh_md5sums -O--builddirectory=_build -O--buildsystem=golang dh_builddeb -O--builddirectory=_build -O--buildsystem=golang dpkg-deb: building package 'pinfish-examples' in '../pinfish-examples_0.1.0+ds-4_all.deb'. dpkg-deb: building package 'pinfish' in '../pinfish_0.1.0+ds-4_i386.deb'. dpkg-genbuildinfo --build=binary -O../pinfish_0.1.0+ds-4_i386.buildinfo dpkg-genchanges --build=binary -O../pinfish_0.1.0+ds-4_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/60953 and its subdirectories I: Current time: Thu May 16 20:50:08 -12 2024 I: pbuilder-time-stamp: 1715935808 Fri May 17 08:50:12 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Fri May 17 08:50:12 UTC 2024 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Fri May 17 08:52:21 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. Fri May 17 08:52:21 UTC 2024 I: pinfish_0.1.0+ds-4_i386.changes: Format: 1.8 Date: Fri, 12 Jan 2024 07:23:48 +0100 Source: pinfish Binary: pinfish pinfish-examples Architecture: all i386 Version: 0.1.0+ds-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: pinfish - Collection of tools to annotate genomes using long read transcrip pinfish-examples - Examples and test data for pinfish Closes: 1048260 Changes: pinfish (0.1.0+ds-4) unstable; urgency=medium . * Team upload. * Cleanup bam files from dh_auto_test Closes: #1048260 * Standards-Version: 4.6.2 (routine-update) * Remove trailing whitespace in debian/copyright (routine-update) * Remove trailing whitespace in debian/rules (routine-update) * No tab in license text (routine-update) Add missing ${misc:Built-Using} to Built-Using on pinfish. Apply multi-arch hints. . + pinfish-examples: Add Multi-Arch: foreign. Checksums-Sha1: f8588d74b950f035eb33d631f19ea50780fe0318 179449492 pinfish-examples_0.1.0+ds-4_all.deb 747cad034ae53d26b334642b0408318174cfd082 6848 pinfish_0.1.0+ds-4_i386.buildinfo a1939ababcb375a74c9956e8f26f26e722112d42 1288592 pinfish_0.1.0+ds-4_i386.deb Checksums-Sha256: d337febf1b15667e1f34a390304bf244e0ac1955956270481234dcb223b60fa2 179449492 pinfish-examples_0.1.0+ds-4_all.deb fdf6f1afcbdef87f1c047b4a29af4f8e34eaa6b8ee4e332c6b3a6d7d896b4603 6848 pinfish_0.1.0+ds-4_i386.buildinfo 70f55b47a9c30bc91e06c1483cc2181ba74b452efedd4f6c78fa4865d252e987 1288592 pinfish_0.1.0+ds-4_i386.deb Files: 3b905498c7db26bd9612b2ac011ee56b 179449492 science optional pinfish-examples_0.1.0+ds-4_all.deb 406e54cb1a60d28b5bf5bba40dac0d0c 6848 science optional pinfish_0.1.0+ds-4_i386.buildinfo 161d9c0eab761aafe2f5ac6d555d1b92 1288592 science optional pinfish_0.1.0+ds-4_i386.deb Fri May 17 08:52:23 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_12-11483.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.gwjzkalh/pinfish_0.1.0+ds-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.gwjzkalh/pinfish_0.1.0+ds-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.gwjzkalh/pinfish_0.1.0+ds-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.gwjzkalh/b1/pinfish_0.1.0+ds-4_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.gwjzkalh/b2/pinfish_0.1.0+ds-4_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 2.196s) 2.196s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 1.857s) 1.857s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 2.519s CPU time consumed: 2.519s Fri May 17 08:52:33 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Fri May 17 08:52:33 UTC 2024 I: pinfish from trixie built successfully and reproducibly on i386. Fri May 17 08:52:34 UTC 2024 I: Submitting .buildinfo files to external archives: Fri May 17 08:52:34 UTC 2024 I: Submitting 8.0K b1/pinfish_0.1.0+ds-4_i386.buildinfo.asc Fri May 17 08:52:35 UTC 2024 I: Submitting 8.0K b2/pinfish_0.1.0+ds-4_i386.buildinfo.asc Fri May 17 08:52:36 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri May 17 08:52:36 UTC 2024 I: Done submitting .buildinfo files. Fri May 17 08:52:36 UTC 2024 I: Removing signed pinfish_0.1.0+ds-4_i386.buildinfo.asc files: removed './b1/pinfish_0.1.0+ds-4_i386.buildinfo.asc' removed './b2/pinfish_0.1.0+ds-4_i386.buildinfo.asc'