Tue Apr 16 09:09:46 UTC 2024 I: starting to build pbsim/trixie/i386 on jenkins on '2024-04-16 09:09' Tue Apr 16 09:09:46 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_2/19917/console.log Tue Apr 16 09:09:46 UTC 2024 I: Downloading source for trixie/pbsim=1.0.3+git20180330.e014b1d+dfsg-3 --2024-04-16 09:09:46-- http://deb.debian.org/debian/pool/main/p/pbsim/pbsim_1.0.3%2bgit20180330.e014b1d%2bdfsg-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2138 (2.1K) [text/prs.lines.tag] Saving to: ‘pbsim_1.0.3+git20180330.e014b1d+dfsg-3.dsc’ 0K .. 100% 257M=0s 2024-04-16 09:09:46 (257 MB/s) - ‘pbsim_1.0.3+git20180330.e014b1d+dfsg-3.dsc’ saved [2138/2138] Tue Apr 16 09:09:46 UTC 2024 I: pbsim_1.0.3+git20180330.e014b1d+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pbsim Binary: pbsim Architecture: any Version: 1.0.3+git20180330.e014b1d+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss Homepage: https://github.com/pfaucon/PBSIM-PacBio-Simulator Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/pbsim Vcs-Git: https://salsa.debian.org/med-team/pbsim.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), asciidoctor Package-List: pbsim deb science optional arch=any Checksums-Sha1: 57c945ecc63de65e191c90197eeac530c95f428d 5305084 pbsim_1.0.3+git20180330.e014b1d+dfsg.orig.tar.xz 4758b6129c5f1aaf9a1121b59fd4c6f59fc2d815 80188 pbsim_1.0.3+git20180330.e014b1d+dfsg-3.debian.tar.xz Checksums-Sha256: 043fef0df0c32c34407241a3dda095be3f6248bcc013f49bac160d289df872aa 5305084 pbsim_1.0.3+git20180330.e014b1d+dfsg.orig.tar.xz cf0e59ee1818664aa9470d8ac4182b4eff94d01446a4a4e0a06520ad519ec7a0 80188 pbsim_1.0.3+git20180330.e014b1d+dfsg-3.debian.tar.xz Files: e2fd933c47e7ab290d65ed65d7b14499 5305084 pbsim_1.0.3+git20180330.e014b1d+dfsg.orig.tar.xz aa63d72483ace74a1a29e0398919e69c 80188 pbsim_1.0.3+git20180330.e014b1d+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmP+9x4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFlUA/9GqTXpicyAbaiaeXRlol5tctJUH7plZyL bZG9Bcii2tvXvMqc1SI58C7Bw6BjJm2R5A4tFFRizYVyb2TXUs3hNxq+2olQHtuX MI8OSWGJutTJ+U2ojmi0KwI8jKCydkylNksKbk98Uk2UdeNN/kJC3iv8ItBjJoUm oF9UORmfXI5aT5HOP7mNaeU169bLPe+RC42W3hmBHK9dxqMQOPTMfba5T7yCUyae O8eLUUJjXrz22EuuZA/DC3MPMMjy0pqaOdU3CN5Gg+Qbci5j9IYWLjx0xL0f0A8B MvSDu1ChsAZ6K1L9R3rADibJGW67nmFB9H4NvltThNKKyz7aGKVgxgOn8ItxQtz+ A4ZLkWHWz7OYuGOdHKjp5Es16p8EJ5uEQYROoX06fU6ZEwpZvb5zADGdRTdIbbt0 WnMqD/rA/ydldFOTAjW9voJdzpAjlKlLeAa9mrA4iqEnzpHxstzXhYzGrub9Mm55 1DShfXvhR55u1TGwmF9+/sUQ8tgI2LFlk7SOwuw2vynpK+KggF/j2g0XrQz1pQ9m L7mF+zyG9CVk+CXCVv/PdyQ8bW/lJqtnEJh+U/vP+TY9wkbpcmPGkaPDdKpJGDtw sb1PPpfrGWCjkbt2QhSlf1ALne9MPWGnrsPx1xRKN9nM32jLxxs0GUAbtOydrJ7W /6XRdnQgjSY= =Gwdn -----END PGP SIGNATURE----- Tue Apr 16 09:09:46 UTC 2024 I: Checking whether the package is not for us Tue Apr 16 09:09:46 UTC 2024 I: Starting 1st build on remote node ionos6-i386.debian.net. Tue Apr 16 09:09:46 UTC 2024 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Tue Apr 16 09:10:19 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 19 03:32:47 -12 2025 I: pbuilder-time-stamp: 1747668767 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [pbsim_1.0.3+git20180330.e014b1d+dfsg-3.dsc] I: copying [./pbsim_1.0.3+git20180330.e014b1d+dfsg.orig.tar.xz] I: copying [./pbsim_1.0.3+git20180330.e014b1d+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Mar 1 06:56:30 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pbsim_1.0.3+git20180330.e014b1d+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting pbsim in pbsim-1.0.3+git20180330.e014b1d+dfsg dpkg-source: info: unpacking pbsim_1.0.3+git20180330.e014b1d+dfsg.orig.tar.xz dpkg-source: info: unpacking pbsim_1.0.3+git20180330.e014b1d+dfsg-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/7715/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='e234ecee91154369b0744ae15f3d4f33' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='7715' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HNh8W22I/pbuilderrc_QLe4 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HNh8W22I/b1 --logfile b1/build.log pbsim_1.0.3+git20180330.e014b1d+dfsg-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos6-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 17 17:48 /bin -> usr/bin I: user script /srv/workspace/pbuilder/7715/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), asciidoctor dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19874 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on asciidoctor; however: Package asciidoctor is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: asciidoctor{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libruby{a} libruby3.1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} openssl{a} po-debconf{a} rake{a} ruby{a} ruby-asciidoctor{a} ruby-net-telnet{a} ruby-rubygems{a} ruby-sdbm{a} ruby-webrick{a} ruby-xmlrpc{a} ruby3.1{a} rubygems-integration{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-lato libarchive-cpio-perl libgpm2 libjs-jquery libltdl-dev libmail-sendmail-perl lynx wget zip 0 packages upgraded, 49 newly installed, 0 to remove and 0 not upgraded. Need to get 28.0 MB of archives. After unpacking 107 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 openssl i386 3.1.5-1 [1246 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20240203 [158 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-2+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 libmagic1 i386 1:5.45-2+b1 [114 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-2+b1 [43.0 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-3 [1195 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.39.3-6 [93.3 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.0-3 [1413 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 rubygems-integration all 1.18 [6704 B] Get: 14 http://deb.debian.org/debian trixie/main i386 rake all 13.0.6-3 [83.9 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 ruby-webrick all 1.8.1-1 [51.4 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 ruby-xmlrpc all 0.3.2-2 [24.4 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libruby i386 1:3.1 [4968 B] Get: 19 http://deb.debian.org/debian trixie/main i386 ruby-sdbm i386 1.0.0-5+b2 [16.7 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libbsd0 i386 0.12.2-1 [134 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libedit2 i386 3.1-20230828-1 [97.5 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libncurses6 i386 6.4+20240113-1 [111 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libyaml-0-2 i386 0.2.5-1 [55.9 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libruby3.1 i386 3.1.2-8 [5456 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 ruby3.1 i386 3.1.2-8 [663 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 ruby-rubygems all 3.4.20-1 [309 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 ruby i386 1:3.1 [5872 B] Get: 28 http://deb.debian.org/debian trixie/main i386 ruby-asciidoctor all 2.0.20-1 [212 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 asciidoctor all 2.0.20-1 [87.7 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 42 http://deb.debian.org/debian trixie/main i386 libelf1 i386 0.190-1+b1 [182 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1 [118 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b2 [727 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Fetched 28.0 MB in 0s (56.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19874 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../01-openssl_3.1.5-1_i386.deb ... Unpacking openssl (3.1.5-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../02-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../04-libmagic1_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic1:i386 (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-2+b1_i386.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-3_i386.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.39.3-6_i386.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../10-libpipeline1_1.5.7-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.12.0-3_i386.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package rubygems-integration. Preparing to unpack .../12-rubygems-integration_1.18_all.deb ... Unpacking rubygems-integration (1.18) ... Selecting previously unselected package rake. Preparing to unpack .../13-rake_13.0.6-3_all.deb ... Unpacking rake (13.0.6-3) ... Selecting previously unselected package ruby-net-telnet. Preparing to unpack .../14-ruby-net-telnet_0.2.0-1_all.deb ... Unpacking ruby-net-telnet (0.2.0-1) ... Selecting previously unselected package ruby-webrick. Preparing to unpack .../15-ruby-webrick_1.8.1-1_all.deb ... Unpacking ruby-webrick (1.8.1-1) ... Selecting previously unselected package ruby-xmlrpc. Preparing to unpack .../16-ruby-xmlrpc_0.3.2-2_all.deb ... Unpacking ruby-xmlrpc (0.3.2-2) ... Selecting previously unselected package libruby:i386. Preparing to unpack .../17-libruby_1%3a3.1_i386.deb ... Unpacking libruby:i386 (1:3.1) ... Selecting previously unselected package ruby-sdbm:i386. Preparing to unpack .../18-ruby-sdbm_1.0.0-5+b2_i386.deb ... Unpacking ruby-sdbm:i386 (1.0.0-5+b2) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../19-libbsd0_0.12.2-1_i386.deb ... Unpacking libbsd0:i386 (0.12.2-1) ... Selecting previously unselected package libedit2:i386. Preparing to unpack .../20-libedit2_3.1-20230828-1_i386.deb ... Unpacking libedit2:i386 (3.1-20230828-1) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../21-libncurses6_6.4+20240113-1_i386.deb ... Unpacking libncurses6:i386 (6.4+20240113-1) ... Selecting previously unselected package libyaml-0-2:i386. Preparing to unpack .../22-libyaml-0-2_0.2.5-1_i386.deb ... Unpacking libyaml-0-2:i386 (0.2.5-1) ... Selecting previously unselected package libruby3.1:i386. Preparing to unpack .../23-libruby3.1_3.1.2-8_i386.deb ... Unpacking libruby3.1:i386 (3.1.2-8) ... Selecting previously unselected package ruby3.1. Preparing to unpack .../24-ruby3.1_3.1.2-8_i386.deb ... Unpacking ruby3.1 (3.1.2-8) ... Selecting previously unselected package ruby-rubygems. Preparing to unpack .../25-ruby-rubygems_3.4.20-1_all.deb ... Unpacking ruby-rubygems (3.4.20-1) ... Selecting previously unselected package ruby. Preparing to unpack .../26-ruby_1%3a3.1_i386.deb ... Unpacking ruby (1:3.1) ... Selecting previously unselected package ruby-asciidoctor. Preparing to unpack .../27-ruby-asciidoctor_2.0.20-1_all.deb ... Unpacking ruby-asciidoctor (2.0.20-1) ... Selecting previously unselected package asciidoctor. Preparing to unpack .../28-asciidoctor_2.0.20-1_all.deb ... Unpacking asciidoctor (2.0.20-1) ... Selecting previously unselected package m4. Preparing to unpack .../29-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../30-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../31-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../32-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../33-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../34-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../35-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../36-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../37-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../38-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../39-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../40-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../41-libelf1_0.190-1+b1_i386.deb ... Unpacking libelf1:i386 (0.190-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../42-dwz_0.15-1_i386.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../43-libicu72_72.1-4+b1_i386.deb ... Unpacking libicu72:i386 (72.1-4+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../44-libxml2_2.9.14+dfsg-1.3+b2_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../45-gettext_0.21-14+b1_i386.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../46-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../47-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../48-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Setting up libpipeline1:i386 (1.5.7-2) ... Setting up libicu72:i386 (72.1-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:i386 (0.2.5-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1:i386 (1:5.45-2+b1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libncurses6:i386 (6.4+20240113-1) ... Setting up ruby-net-telnet (0.2.0-1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up ruby-webrick (1.8.1-1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up openssl (3.1.5-1) ... Setting up libbsd0:i386 (0.12.2-1) ... Setting up libelf1:i386 (0.190-1+b1) ... Setting up ruby-xmlrpc (0.3.2-2) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libedit2:i386 (3.1-20230828-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up rubygems-integration (1.18) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Setting up rake (13.0.6-3) ... Setting up libruby:i386 (1:3.1) ... Setting up ruby-sdbm:i386 (1.0.0-5+b2) ... Setting up libruby3.1:i386 (3.1.2-8) ... Setting up ruby3.1 (3.1.2-8) ... Setting up ruby (1:3.1) ... Setting up ruby-asciidoctor (2.0.20-1) ... Setting up asciidoctor (2.0.20-1) ... Setting up ruby-rubygems (3.4.20-1) ... Processing triggers for libc-bin (2.37-15) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pbsim_1.0.3+git20180330.e014b1d+dfsg-3_source.changes dpkg-buildpackage: info: source package pbsim dpkg-buildpackage: info: source version 1.0.3+git20180330.e014b1d+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' rm -f debian/pbsim.1 dh_auto_clean -- make[1]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:7: warning: The macro `AC_CONFIG_HEADER' is obsolete. configure.ac:7: You should run autoupdate. ./lib/autoconf/status.m4:719: AC_CONFIG_HEADER is expanded from... configure.ac:7: the top level configure.ac:17: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:17: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:17: the top level configure.ac:21: warning: The macro `AC_HEADER_TIME' is obsolete. configure.ac:21: You should run autoupdate. ./lib/autoconf/headers.m4:743: AC_HEADER_TIME is expanded from... configure.ac:21: the top level configure.ac:12: installing './compile' configure.ac:24: installing './config.guess' configure.ac:24: installing './config.sub' configure.ac:8: installing './install-sh' configure.ac:8: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for sys/time.h... (cached) yes checking for unistd.h... (cached) yes checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for GNU libc compatible malloc... yes checking for floor... no checking for gettimeofday... yes checking for memset... yes checking for pow... no checking for sqrt... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build make -j22 make[1]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' make all-recursive make[2]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' Making all in src make[3]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o helpers.o helpers.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o output.o output.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pbsim.o pbsim.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o pbsim helpers.o output.o pbsim.o make[3]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' make[3]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[3]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[2]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[1]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' dh_auto_test make -j22 check "TESTSUITEFLAGS=-j22 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' Making check in src make[2]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' make[2]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[2]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[1]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' dh_auto_install -- make -j22 install DESTDIR=/build/reproducible-path/pbsim-1.0.3\+git20180330.e014b1d\+dfsg/debian/pbsim AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' Making install in src make[3]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' make[4]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' make[4]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg/debian/pbsim/usr/bin' /usr/bin/install -c pbsim '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg/debian/pbsim/usr/bin' make[4]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' make[3]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg/src' make[3]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[4]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[3]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' make[2]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' mkdir -p debian/pbsim/usr/share/pbsim/models cp -p data/* debian/pbsim/usr/share/pbsim/models make[1]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' debian/rules override_dh_installdocs make[1]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' mkdir -p debian/pbsim/usr/share/doc/pbsim/ cp README debian/pbsim/usr/share/doc/pbsim dh_installdocs -- make[1]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' asciidoctor -a docdate='' -b manpage debian/pbsim.1.adoc dh_installman -- make[1]: Leaving directory '/build/reproducible-path/pbsim-1.0.3+git20180330.e014b1d+dfsg' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pbsim' in '../pbsim_1.0.3+git20180330.e014b1d+dfsg-3_i386.deb'. dpkg-deb: building package 'pbsim-dbgsym' in '../pbsim-dbgsym_1.0.3+git20180330.e014b1d+dfsg-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../pbsim_1.0.3+git20180330.e014b1d+dfsg-3_i386.buildinfo dpkg-genchanges --build=binary -O../pbsim_1.0.3+git20180330.e014b1d+dfsg-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/7715 and its subdirectories I: Current time: Mon May 19 03:33:15 -12 2025 I: pbuilder-time-stamp: 1747668795 Tue Apr 16 09:10:19 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Tue Apr 16 09:10:19 UTC 2024 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Tue Apr 16 09:11:04 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. Tue Apr 16 09:11:05 UTC 2024 I: pbsim_1.0.3+git20180330.e014b1d+dfsg-3_i386.changes: Format: 1.8 Date: Wed, 01 Mar 2023 07:45:44 +0100 Source: pbsim Binary: pbsim pbsim-dbgsym Architecture: i386 Version: 1.0.3+git20180330.e014b1d+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: pbsim - simulator for PacBio sequencing reads Changes: pbsim (1.0.3+git20180330.e014b1d+dfsg-3) unstable; urgency=medium . * Team upload. * Packaging update * Standards-Version: 4.6.2 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Update renamed lintian tag names in lintian overrides. * Set upstream metadata fields: Repository-Browse. Checksums-Sha1: d512067a62db3c752fc48c219662dd89c1167c88 41180 pbsim-dbgsym_1.0.3+git20180330.e014b1d+dfsg-3_i386.deb 4f3116c8dd56421e15879e4d3fa264b53d8288eb 6069 pbsim_1.0.3+git20180330.e014b1d+dfsg-3_i386.buildinfo dbffabefe81bdcefbb83776566bafb1ddcf900d6 26396 pbsim_1.0.3+git20180330.e014b1d+dfsg-3_i386.deb Checksums-Sha256: b3f39257aaec40297045f9360b95ebb7c7470d3b3deff46b7581b900597cee2c 41180 pbsim-dbgsym_1.0.3+git20180330.e014b1d+dfsg-3_i386.deb a9b8c6369fe5ba5427fb4b9303c3dc828e47c70690ccead9781e8e3e750bb45c 6069 pbsim_1.0.3+git20180330.e014b1d+dfsg-3_i386.buildinfo 478feb2b15f01b5b3fc9278cec7eaca00cc22d05b8252bd15ab797161e13789f 26396 pbsim_1.0.3+git20180330.e014b1d+dfsg-3_i386.deb Files: 80f710e5f58b6094a72d912740bc37f1 41180 debug optional pbsim-dbgsym_1.0.3+git20180330.e014b1d+dfsg-3_i386.deb b1a52d1ca4aa90754abcedf3dc1b6310 6069 science optional pbsim_1.0.3+git20180330.e014b1d+dfsg-3_i386.buildinfo 04c56419d4321412b75d5053d85e84da 26396 science optional pbsim_1.0.3+git20180330.e014b1d+dfsg-3_i386.deb Tue Apr 16 09:11:06 UTC 2024 I: diffoscope 264 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_2-19917.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.HNh8W22I/pbsim_1.0.3+git20180330.e014b1d+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.HNh8W22I/pbsim_1.0.3+git20180330.e014b1d+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.HNh8W22I/pbsim_1.0.3+git20180330.e014b1d+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.HNh8W22I/b1/pbsim_1.0.3+git20180330.e014b1d+dfsg-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.HNh8W22I/b2/pbsim_1.0.3+git20180330.e014b1d+dfsg-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.325s) 0.325s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.016s) 0.016s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 637ms CPU time consumed: 636ms Tue Apr 16 09:11:07 UTC 2024 I: diffoscope 264 found no differences in the changes files, and a .buildinfo file also exists. Tue Apr 16 09:11:07 UTC 2024 I: pbsim from trixie built successfully and reproducibly on i386. Tue Apr 16 09:11:08 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Apr 16 09:11:08 UTC 2024 I: Submitting 8.0K b1/pbsim_1.0.3+git20180330.e014b1d+dfsg-3_i386.buildinfo.asc Tue Apr 16 09:11:09 UTC 2024 I: Submitting 8.0K b2/pbsim_1.0.3+git20180330.e014b1d+dfsg-3_i386.buildinfo.asc Tue Apr 16 09:11:11 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Apr 16 09:11:11 UTC 2024 I: Done submitting .buildinfo files. Tue Apr 16 09:11:11 UTC 2024 I: Removing signed pbsim_1.0.3+git20180330.e014b1d+dfsg-3_i386.buildinfo.asc files: removed './b1/pbsim_1.0.3+git20180330.e014b1d+dfsg-3_i386.buildinfo.asc' removed './b2/pbsim_1.0.3+git20180330.e014b1d+dfsg-3_i386.buildinfo.asc'