Tue Apr 30 17:41:18 UTC 2024 I: starting to build pairtools/trixie/i386 on jenkins on '2024-04-30 17:41' Tue Apr 30 17:41:18 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_5/18914/console.log Tue Apr 30 17:41:18 UTC 2024 I: Downloading source for trixie/pairtools=1.0.3-1 --2024-04-30 17:41:19-- http://deb.debian.org/debian/pool/main/p/pairtools/pairtools_1.0.3-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2382 (2.3K) [text/prs.lines.tag] Saving to: ‘pairtools_1.0.3-1.dsc’ 0K .. 100% 234M=0s 2024-04-30 17:41:19 (234 MB/s) - ‘pairtools_1.0.3-1.dsc’ saved [2382/2382] Tue Apr 30 17:41:19 UTC 2024 I: pairtools_1.0.3-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pairtools Binary: python3-pairtools, python3-pairtools-examples Architecture: any Version: 1.0.3-1 Maintainer: Debian Med Packaging Team Uploaders: Antoni Villalonga Homepage: https://github.com/mirnylab/pairtools Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/pairtools Vcs-Git: https://salsa.debian.org/med-team/pairtools.git Testsuite: autopkgtest Testsuite-Triggers: python3-pytest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, cython3, python3-setuptools, python3-bioframe, python3-click, python3-exceptiongroup, python3-numpy, python3-pandas, python3-pysam (>= 0.20.0+ds-3~), python3-pytest , python3-scipy, libhts-dev, python3-yaml Package-List: python3-pairtools deb python optional arch=any python3-pairtools-examples deb python optional arch=any Checksums-Sha1: a741d0b8d93ff8703371347ec2667d095061e1cd 1254538 pairtools_1.0.3.orig.tar.gz e0b40d63dc0f0828b0a7944d96fcf51e12edb2b1 7084 pairtools_1.0.3-1.debian.tar.xz Checksums-Sha256: ef32885fb4c7cbf05b57434df303ba6f84c60f2200aaa43dddc08493735dc555 1254538 pairtools_1.0.3.orig.tar.gz fe5722549fdd0ce5b346a30e721cce2b2649e7b94ec2e6ac8e7cd35c8a9995ae 7084 pairtools_1.0.3-1.debian.tar.xz Files: efbc84583dc040e29d89ade8011af32b 1254538 pairtools_1.0.3.orig.tar.gz f939bf4581a15151d20bed08c2063855 7084 pairtools_1.0.3-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmV3IGsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtE3pw//Una5L+ojt6PH6ABYP3/Nb+u5C8tr0m2Z 3+mMSe8fszKD9wJkZqvSyTkWyjE2WEAMpdNQ5lNa8+7/gcVMaYOUH8VvNIYlawYu OmANbTE09pv9S1WVhdq4EQVfMiHRvK/d30L/4/YJjo0/EFKuYMrARUo/VhpNdnvV C0S/g3vsxsjhfxYVAIlQS6GXCIIonuXdBtuErOl5M71hTbXxgQsQcjxIaPneUsqB LFvoEJWMU07g5vFxysmtU/jm3CwbcLcsnsLzHGIVqEiLZpvbCYul7ado5s2DaBYT lvWn2mgg7KOFbn8oDjOrzGHUbmyRFH7yA7WFONKCE0ETIHWobgiG1h5UZrV7aolg VEYgiH3+A7k/eYum69TxAWJ9anVWbviWGZaN/eyEZpsXdN2zCmY4ARlJpGws/M/q YyLb/PN2ta8R8GHVz3SePO4uW//2SE+xKgXH+eXz35XwDcWy5nk0BUZgE46QQgkJ Ip1vEAb0rrTMX7Iind3rbUHgCZk9JzxqGkxdjQhKoXqS0hSeHLjuszxiCVejsJE+ BCiUoZT/IfljuJ1DR5N3b2WUgkiPx2sAaGB8dhDS1QPmM+LB/TM9JgmKIxtMbbAw kAs7vVOnm1p4WBVr7t0BZqMildzeOirmQ5UJ3oaQdFRuhydbxYp7kBC/Mz7awDvS LnQJPAM1VP0= =d4i+ -----END PGP SIGNATURE----- Tue Apr 30 17:41:19 UTC 2024 I: Checking whether the package is not for us Tue Apr 30 17:41:19 UTC 2024 I: Starting 1st build on remote node ionos12-i386.debian.net. Tue Apr 30 17:41:19 UTC 2024 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Tue Apr 30 17:48:25 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Apr 30 05:41:21 -12 2024 I: pbuilder-time-stamp: 1714498881 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [pairtools_1.0.3-1.dsc] I: copying [./pairtools_1.0.3.orig.tar.gz] I: copying [./pairtools_1.0.3-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Dec 11 14:44:59 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pairtools_1.0.3-1.dsc: no acceptable signature found dpkg-source: info: extracting pairtools in pairtools-1.0.3 dpkg-source: info: unpacking pairtools_1.0.3.orig.tar.gz dpkg-source: info: unpacking pairtools_1.0.3-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile dpkg-source: info: applying fix-spelling dpkg-source: info: applying tests-to-python3 dpkg-source: info: applying fix-pysam-ftbfs.patch dpkg-source: info: applying do-not-run-coverage.patch dpkg-source: info: applying no_install_depends_cython.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3910/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='39fe14003ec24645a2e75dcdce97e23d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3910' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mro2lwSG/pbuilderrc_XxX3 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mro2lwSG/b1 --logfile b1/build.log pairtools_1.0.3-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 21 07:12 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3910/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, cython3, python3-setuptools, python3-bioframe, python3-click, python3-exceptiongroup, python3-numpy, python3-pandas, python3-pysam (>= 0.20.0+ds-3~), python3-pytest, python3-scipy, libhts-dev, python3-yaml dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19885 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-bioframe; however: Package python3-bioframe is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. pbuilder-satisfydepends-dummy depends on python3-exceptiongroup; however: Package python3-exceptiongroup is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam (>= 0.20.0+ds-3~); however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 19.3 MB of archives. After unpacking 73.7 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: dh-sequence-python3 which is a virtual package, provided by: - dh-python (6.20240422), but it is not installable Depends: python3-all-dev but it is not installable Depends: cython3 but it is not installable Depends: python3-setuptools but it is not installable Depends: python3-bioframe but it is not installable Depends: python3-click but it is not installable Depends: python3-exceptiongroup but it is not installable Depends: python3-numpy but it is not installable Depends: python3-pandas but it is not installable Depends: python3-pysam (>= 0.20.0+ds-3~) but it is not installable Depends: python3-pytest but it is not installable Depends: python3-scipy but it is not installable Depends: libhts-dev but it is not installable Depends: python3-yaml but it is not installable The following actions will resolve these dependencies: Remove the following packages: 1) libdb5.3 [5.3.28+dfsg2-4+b1 (now)] 2) libssl3 [3.1.5-1 (now)] Install the following packages: 3) blt [2.5.3+dfsg-7 (testing)] 4) ca-certificates [20240203 (testing)] 5) cython3 [3.0.10+dfsg-5 (testing)] 6) dh-python [6.20240422 (testing)] 7) fontconfig-config [2.15.0-1.1 (testing)] 8) fonts-dejavu-core [2.37-8 (testing)] 9) fonts-dejavu-mono [2.37-8 (testing)] 10) fonts-lyx [2.4.0~RC4-1 (testing)] 11) libblis4-serial [0.9.0-1+b2 (testing)] 12) libbrotli1 [1.1.0-2+b3 (testing)] 13) libbsd0 [0.12.2-1 (testing)] 14) libcurl3t64-gnutls [8.7.1-3 (testing)] 15) libcurl4-gnutls-dev [8.7.1-3 (testing)] 16) libdb5.3t64 [5.3.28+dfsg2-7 (testing)] 17) libdeflate-dev [1.20-1 (testing)] 18) libdeflate0 [1.20-1 (testing)] 19) libexpat1 [2.6.2-1 (testing)] 20) libexpat1-dev [2.6.2-1 (testing)] 21) libfontconfig1 [2.15.0-1.1 (testing)] 22) libfreetype6 [2.13.2+dfsg-1+b4 (testing)] 23) libfribidi0 [1.0.13-3+b1 (testing)] 24) libgfortran5 [14-20240330-1 (testing)] 25) libglib2.0-0t64 [2.78.4-7 (testing)] 26) libgraphite2-3 [1.3.14-2 (testing)] 27) libharfbuzz0b [8.3.0-2+b1 (testing)] 28) libhts-dev [1.19+ds-1 (testing)] 29) libhts3 [1.19+ds-1 (testing)] 30) libhtscodecs2 [1.6.0-1+b1 (testing)] 31) libimagequant0 [2.18.0-1+b1 (testing)] 32) libjbig0 [2.1-6.1+b1 (testing)] 33) libjpeg62-turbo [1:2.1.5-2+b2 (testing)] 34) libjs-jquery [3.6.1+dfsg+~3.5.14-1 (testing)] 35) libjs-jquery-ui [1.13.2+dfsg-1 (testing)] 36) libjs-sphinxdoc [7.2.6-6 (testing)] 37) libjs-underscore [1.13.4~dfsg+~1.11.4-3 (testing)] 38) liblapack3 [3.12.0-3 (testing)] 39) liblbfgsb0 [3.0+dfsg.4-1+b1 (testing)] 40) liblcms2-2 [2.14-2+b1 (testing)] 41) libldap-2.5-0 [2.5.13+dfsg-5+b3 (testing)] 42) liblerc4 [4.0.0+ds-4+b1 (testing)] 43) liblzma-dev [5.6.1+really5.4.5-1 (testing)] 44) libnghttp2-14 [1.59.0-1 (testing)] 45) libopenjp2-7 [2.5.0-2+b3 (testing)] 46) libpng16-16t64 [1.6.43-5 (testing)] 47) libpsl5t64 [0.21.2-1.1 (testing)] 48) libpython3-all-dev [3.11.8-1 (testing)] 49) libpython3-dev [3.11.8-1 (testing)] 50) libpython3-stdlib [3.11.8-1 (testing)] 51) libpython3.11-dev [3.11.9-1 (testing)] 52) libpython3.11-minimal [3.11.9-1 (testing)] 53) libpython3.11-stdlib [3.11.9-1 (testing)] 54) libpython3.11t64 [3.11.9-1 (testing)] 55) libpython3.12-dev [3.12.3-1 (testing)] 56) libpython3.12-minimal [3.12.3-1 (testing)] 57) libpython3.12-stdlib [3.12.3-1 (testing)] 58) libpython3.12t64 [3.12.3-1 (testing)] 59) libqhull-r8.0 [2020.2-6+b1 (testing)] 60) libraqm0 [0.10.1-1+b1 (testing)] 61) libreadline8t64 [8.2-4 (testing)] 62) librtmp1 [2.4+20151223.gitfa8646d.1-2+b4 (testing)] 63) libsasl2-2 [2.1.28+dfsg1-4+b1 (testing)] 64) libsasl2-modules-db [2.1.28+dfsg1-4+b1 (testing)] 65) libsharpyuv0 [1.3.2-0.4+b1 (testing)] 66) libssh2-1t64 [1.11.0-4.1+b2 (testing)] 67) libssl3t64 [3.2.1-3 (testing)] 68) libtcl8.6 [8.6.14+dfsg-1 (testing)] 69) libtiff6 [4.5.1+git230720-4 (testing)] 70) libtk8.6 [8.6.14-1 (testing)] 71) libwebp7 [1.3.2-0.4+b1 (testing)] 72) libwebpdemux2 [1.3.2-0.4+b1 (testing)] 73) libwebpmux3 [1.3.2-0.4+b1 (testing)] 74) libx11-6 [2:1.8.7-1+b1 (testing)] 75) libx11-data [2:1.8.7-1 (testing)] 76) libxau6 [1:1.0.9-1+b1 (testing)] 77) libxcb1 [1.15-1 (testing)] 78) libxdmcp6 [1:1.1.2-3+b1 (testing)] 79) libxext6 [2:1.3.4-1+b1 (testing)] 80) libxft2 [2.3.6-1+b1 (testing)] 81) libxrender1 [1:0.9.10-1.1+b1 (testing)] 82) libxslt1.1 [1.1.35-1+b1 (testing)] 83) libxss1 [1:1.2.3-1+b1 (testing)] 84) libyaml-0-2 [0.2.5-1+b1 (testing)] 85) media-types [10.1.0 (testing)] 86) netbase [6.4 (testing)] 87) openssl [3.2.1-3 (testing)] 88) python-matplotlib-data [3.6.3-1 (testing)] 89) python3 [3.11.8-1 (testing)] 90) python3-all [3.11.8-1 (testing)] 91) python3-all-dev [3.11.8-1 (testing)] 92) python3-appdirs [1.4.4-4 (testing)] 93) python3-attr [23.2.0-2 (testing)] 94) python3-bioframe [0.4.1-1 (testing)] 95) python3-brotli [1.1.0-2+b3 (testing)] 96) python3-certifi [2023.11.17-1 (testing)] 97) python3-chardet [5.2.0+dfsg-1 (testing)] 98) python3-charset-normalizer [3.3.2-1 (testing)] 99) python3-click [8.1.7-1 (testing)] 100) python3-colorama [0.4.6-4 (testing)] 101) python3-contourpy [1.0.7-3 (testing)] 102) python3-cycler [0.12.1-1 (testing)] 103) python3-dateutil [2.9.0-2 (testing)] 104) python3-decorator [5.1.1-5 (testing)] 105) python3-dev [3.11.8-1 (testing)] 106) python3-distutils [3.12.3-1 (testing)] 107) python3-exceptiongroup [1.2.1-1 (testing)] 108) python3-fonttools [4.46.0-1 (testing)] 109) python3-fs [2.4.16-4 (testing)] 110) python3-idna [3.6-2 (testing)] 111) python3-iniconfig [1.1.1-2 (testing)] 112) python3-kiwisolver [1.4.5-1 (testing)] 113) python3-lib2to3 [3.12.3-1 (testing)] 114) python3-lxml [5.1.0-1 (testing)] 115) python3-lz4 [4.0.2+dfsg-1+b3 (testing)] 116) python3-matplotlib [3.6.3-1+b2 (testing)] 117) python3-minimal [3.11.8-1 (testing)] 118) python3-mpmath [1.3.0-1 (testing)] 119) python3-munkres [1.1.4-3 (testing)] 120) python3-numpy [1:1.24.2-2 (testing)] 121) python3-packaging [24.0-1 (testing)] 122) python3-pandas [2.1.4+dfsg-5 (testing)] 123) python3-pandas-lib [2.1.4+dfsg-5 (testing)] 124) python3-pil [10.3.0-2 (testing)] 125) python3-pil.imagetk [10.3.0-2 (testing)] 126) python3-pkg-resources [68.1.2-2 (testing)] 127) python3-pluggy [1.5.0-1 (testing)] 128) python3-pyparsing [3.1.2-1 (testing)] 129) python3-pysam [0.22.0+ds-1+b1 (testing)] 130) python3-pytest [7.4.4-3 (testing)] 131) python3-requests [2.31.0+dfsg-1 (testing)] 132) python3-scipy [1.11.4-6 (testing)] 133) python3-setuptools [68.1.2-2 (testing)] 134) python3-six [1.16.0-6 (testing)] 135) python3-sympy [1.12-7 (testing)] 136) python3-tk [3.12.3-1 (testing)] 137) python3-tz [2024.1-2 (testing)] 138) python3-ufolib2 [0.16.0+dfsg1-1 (testing)] 139) python3-urllib3 [1.26.18-2 (testing)] 140) python3-yaml [6.0.1-2 (testing)] 141) python3.11 [3.11.9-1 (testing)] 142) python3.11-dev [3.11.9-1 (testing)] 143) python3.11-minimal [3.11.9-1 (testing)] 144) python3.12 [3.12.3-1 (testing)] 145) python3.12-dev [3.12.3-1 (testing)] 146) python3.12-minimal [3.12.3-1 (testing)] 147) readline-common [8.2-4 (testing)] 148) tk8.6-blt2.5 [2.5.3+dfsg-7 (testing)] 149) tzdata [2024a-3 (testing)] 150) unicode-data [15.1.0-1 (testing)] 151) x11-common [1:7.7+23 (testing)] 152) zlib1g-dev [1:1.3.dfsg-3.1 (testing)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblis4-serial{a} libbrotli1{a} libbsd0{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdb5.3t64{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libhts-dev{a} libhts3{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libopenjp2-7{a} libpipeline1{a} libpng16-16t64{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libssl3t64{a} libsub-override-perl{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-bioframe{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-exceptiongroup{a} python3-fonttools{a} python3-fs{a} python3-idna{a} python3-iniconfig{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-mpmath{a} python3-munkres{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyparsing{a} python3-pysam{a} python3-pytest{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3-yaml{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages will be REMOVED: libdb5.3{a} libssl3{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pygments python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 180 newly installed, 2 to remove and 0 not upgraded. Need to get 148 MB of archives. After unpacking 649 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libdb5.3t64 i386 5.3.28+dfsg2-7 [759 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libssl3t64 i386 3.2.1-3 [2234 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libpython3.11-minimal i386 3.11.9-1 [817 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.2-1 [107 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 python3.11-minimal i386 3.11.9-1 [1918 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.11.8-1 [26.3 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 tzdata all 2024a-3 [255 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-4 [69.3 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-4 [171 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 libpython3.11-stdlib i386 3.11.9-1 [1795 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 python3.11 i386 3.11.9-1 [602 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.11.8-1 [9336 B] Get: 15 http://deb.debian.org/debian trixie/main i386 python3 i386 3.11.8-1 [27.4 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.3-1 [809 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.3-1 [2224 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 openssl i386 3.2.1-3 [1364 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20240203 [158 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3 [42.9 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-3+b1 [1195 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.39.3-6 [93.3 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.0-3 [1413 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libtcl8.6 i386 8.6.14+dfsg-1 [1095 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b3 [314 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libpng16-16t64 i386 1.6.43-5 [286 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 libfreetype6 i386 2.13.2+dfsg-1+b4 [449 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-core all 2.37-8 [840 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 fontconfig-config i386 2.15.0-1.1 [317 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libfontconfig1 i386 2.15.0-1.1 [401 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libxau6 i386 1:1.0.9-1+b1 [18.5 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libbsd0 i386 0.12.2-1 [134 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libxdmcp6 i386 1:1.1.2-3+b1 [24.8 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libx11-data all 2:1.8.7-1 [328 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 libx11-6 i386 2:1.8.7-1+b1 [822 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 libxrender1 i386 1:0.9.10-1.1+b1 [28.8 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libxft2 i386 2.3.6-1+b1 [55.3 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 x11-common all 1:7.7+23 [252 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 libxss1 i386 1:1.2.3-1+b1 [17.3 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 libtk8.6 i386 8.6.14-1 [826 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 tk8.6-blt2.5 i386 2.5.3+dfsg-7 [616 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 blt i386 2.5.3+dfsg-7 [6024 B] Get: 57 http://deb.debian.org/debian trixie/main i386 cython3 i386 3.0.10+dfsg-5 [3548 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 65 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-1+b1 [194 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b3 [727 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 python3-distutils all 3.12.3-1 [131 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 68.1.2-2 [468 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20240422 [107 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 fonts-lyx all 2.4.0~RC4-1 [189 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 libblis4-serial i386 0.9.0-1+b2 [816 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-4+b1 [20.7 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-4+b1 [60.7 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5+b3 [196 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.59.0-1 [82.5 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.0-4.1+b2 [225 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 libcurl3t64-gnutls i386 8.7.1-3 [467 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 libcurl4-gnutls-dev i386 8.7.1-3 [589 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.20-1 [46.9 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 libdeflate-dev i386 1.20-1 [56.0 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 libexpat1-dev i386 2.6.2-1 [165 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 libfribidi0 i386 1.0.13-3+b1 [71.8 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14-20240330-1 [735 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 libglib2.0-0t64 i386 2.78.4-7 [1522 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 libgraphite2-3 i386 1.3.14-2 [77.7 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 libharfbuzz0b i386 8.3.0-2+b1 [2234 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 libhtscodecs2 i386 1.6.0-1+b1 [68.5 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 libhts3 i386 1.19+ds-1 [490 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 liblzma-dev i386 5.6.1+really5.4.5-1 [304 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg-3.1 [915 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 libhts-dev i386 1.19+ds-1 [1660 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 libimagequant0 i386 2.18.0-1+b1 [35.9 kB] Get: 103 http://deb.debian.org/debian trixie/main i386 libjbig0 i386 2.1-6.1+b1 [31.8 kB] Get: 104 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo i386 1:2.1.5-2+b2 [169 kB] Get: 105 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 106 http://deb.debian.org/debian trixie/main i386 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 107 http://deb.debian.org/debian trixie/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 108 http://deb.debian.org/debian trixie/main i386 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 109 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.0-3 [2167 kB] Get: 110 http://deb.debian.org/debian trixie/main i386 liblbfgsb0 i386 3.0+dfsg.4-1+b1 [29.1 kB] Get: 111 http://deb.debian.org/debian trixie/main i386 liblcms2-2 i386 2.14-2+b1 [165 kB] Get: 112 http://deb.debian.org/debian trixie/main i386 liblerc4 i386 4.0.0+ds-4+b1 [180 kB] Get: 113 http://deb.debian.org/debian trixie/main i386 libopenjp2-7 i386 2.5.0-2+b3 [197 kB] Get: 114 http://deb.debian.org/debian trixie/main i386 libpython3.11t64 i386 3.11.9-1 [1982 kB] Get: 115 http://deb.debian.org/debian trixie/main i386 libpython3.11-dev i386 3.11.9-1 [4632 kB] Get: 116 http://deb.debian.org/debian trixie/main i386 libpython3-dev i386 3.11.8-1 [9600 B] Get: 117 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.3-1 [1945 kB] Get: 118 http://deb.debian.org/debian trixie/main i386 libpython3.12t64 i386 3.12.3-1 [2141 kB] Get: 119 http://deb.debian.org/debian trixie/main i386 libpython3.12-dev i386 3.12.3-1 [5240 kB] Get: 120 http://deb.debian.org/debian trixie/main i386 libpython3-all-dev i386 3.11.8-1 [1068 B] Get: 121 http://deb.debian.org/debian trixie/main i386 libqhull-r8.0 i386 2020.2-6+b1 [256 kB] Get: 122 http://deb.debian.org/debian trixie/main i386 libraqm0 i386 0.10.1-1+b1 [14.7 kB] Get: 123 http://deb.debian.org/debian trixie/main i386 libsharpyuv0 i386 1.3.2-0.4+b1 [107 kB] Get: 124 http://deb.debian.org/debian trixie/main i386 libwebp7 i386 1.3.2-0.4+b1 [314 kB] Get: 125 http://deb.debian.org/debian trixie/main i386 libtiff6 i386 4.5.1+git230720-4 [338 kB] Get: 126 http://deb.debian.org/debian trixie/main i386 libwebpdemux2 i386 1.3.2-0.4+b1 [108 kB] Get: 127 http://deb.debian.org/debian trixie/main i386 libwebpmux3 i386 1.3.2-0.4+b1 [122 kB] Get: 128 http://deb.debian.org/debian trixie/main i386 libxslt1.1 i386 1.1.35-1+b1 [243 kB] Get: 129 http://deb.debian.org/debian trixie/main i386 libyaml-0-2 i386 0.2.5-1+b1 [55.2 kB] Get: 130 http://deb.debian.org/debian trixie/main i386 python-matplotlib-data all 3.6.3-1 [2744 kB] Get: 131 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.3-1 [659 kB] Get: 132 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.11.8-1 [1056 B] Get: 133 http://deb.debian.org/debian trixie/main i386 python3.11-dev i386 3.11.9-1 [501 kB] Get: 134 http://deb.debian.org/debian trixie/main i386 python3-dev i386 3.11.8-1 [26.1 kB] Get: 135 http://deb.debian.org/debian trixie/main i386 python3.12-dev i386 3.12.3-1 [499 kB] Get: 136 http://deb.debian.org/debian trixie/main i386 python3-all-dev i386 3.11.8-1 [1072 B] Get: 137 http://deb.debian.org/debian trixie/main i386 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 138 http://deb.debian.org/debian trixie/main i386 python3-attr all 23.2.0-2 [65.5 kB] Get: 139 http://deb.debian.org/debian trixie/main i386 python3-six all 1.16.0-6 [16.3 kB] Get: 140 http://deb.debian.org/debian trixie/main i386 python3-dateutil all 2.9.0-2 [79.4 kB] Get: 141 http://deb.debian.org/debian trixie/main i386 python3-pil i386 10.3.0-2 [566 kB] Get: 142 http://deb.debian.org/debian trixie/main i386 python3-tk i386 3.12.3-1 [110 kB] Get: 143 http://deb.debian.org/debian trixie/main i386 python3-pil.imagetk i386 10.3.0-2 [79.7 kB] Get: 144 http://deb.debian.org/debian trixie/main i386 python3-pyparsing all 3.1.2-1 [146 kB] Get: 145 http://deb.debian.org/debian trixie/main i386 python3-numpy i386 1:1.24.2-2 [4879 kB] Get: 146 http://deb.debian.org/debian trixie/main i386 python3-contourpy i386 1.0.7-3 [295 kB] Get: 147 http://deb.debian.org/debian trixie/main i386 python3-cycler all 0.12.1-1 [9496 B] Get: 148 http://deb.debian.org/debian trixie/main i386 python3-brotli i386 1.1.0-2+b3 [323 kB] Get: 149 http://deb.debian.org/debian trixie/main i386 python3-decorator all 5.1.1-5 [15.1 kB] Get: 150 http://deb.debian.org/debian trixie/main i386 python3-scipy i386 1.11.4-6 [19.0 MB] Get: 151 http://deb.debian.org/debian trixie/main i386 python3-munkres all 1.1.4-3 [11.5 kB] Get: 152 http://deb.debian.org/debian trixie/main i386 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 153 http://deb.debian.org/debian trixie/main i386 python3-mpmath all 1.3.0-1 [419 kB] Get: 154 http://deb.debian.org/debian trixie/main i386 python3-sympy all 1.12-7 [3869 kB] Get: 155 http://deb.debian.org/debian trixie/main i386 python3-tz all 2024.1-2 [30.9 kB] Get: 156 http://deb.debian.org/debian trixie/main i386 python3-fs all 2.4.16-4 [95.4 kB] Get: 157 http://deb.debian.org/debian trixie/main i386 python3-lxml i386 5.1.0-1 [2065 kB] Get: 158 http://deb.debian.org/debian trixie/main i386 python3-lz4 i386 4.0.2+dfsg-1+b3 [25.6 kB] Get: 159 http://deb.debian.org/debian trixie/main i386 unicode-data all 15.1.0-1 [8547 kB] Get: 160 http://deb.debian.org/debian trixie/main i386 python3-fonttools i386 4.46.0-1 [1613 kB] Get: 161 http://deb.debian.org/debian trixie/main i386 python3-kiwisolver i386 1.4.5-1 [84.8 kB] Get: 162 http://deb.debian.org/debian trixie/main i386 python3-packaging all 24.0-1 [45.5 kB] Get: 163 http://deb.debian.org/debian trixie/main i386 python3-matplotlib i386 3.6.3-1+b2 [8100 kB] Get: 164 http://deb.debian.org/debian trixie/main i386 python3-pandas-lib i386 2.1.4+dfsg-5 [7492 kB] Get: 165 http://deb.debian.org/debian trixie/main i386 python3-pandas all 2.1.4+dfsg-5 [3015 kB] Get: 166 http://deb.debian.org/debian trixie/main i386 python3-certifi all 2023.11.17-1 [155 kB] Get: 167 http://deb.debian.org/debian trixie/main i386 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 168 http://deb.debian.org/debian trixie/main i386 python3-idna all 3.6-2 [37.0 kB] Get: 169 http://deb.debian.org/debian trixie/main i386 python3-urllib3 all 1.26.18-2 [116 kB] Get: 170 http://deb.debian.org/debian trixie/main i386 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 171 http://deb.debian.org/debian trixie/main i386 python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get: 172 http://deb.debian.org/debian trixie/main i386 python3-bioframe all 0.4.1-1 [71.6 kB] Get: 173 http://deb.debian.org/debian trixie/main i386 python3-colorama all 0.4.6-4 [36.2 kB] Get: 174 http://deb.debian.org/debian trixie/main i386 python3-click all 8.1.7-1 [94.0 kB] Get: 175 http://deb.debian.org/debian trixie/main i386 python3-exceptiongroup all 1.2.1-1 [19.6 kB] Get: 176 http://deb.debian.org/debian trixie/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 177 http://deb.debian.org/debian trixie/main i386 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 178 http://deb.debian.org/debian trixie/main i386 python3-pysam i386 0.22.0+ds-1+b1 [4120 kB] Get: 179 http://deb.debian.org/debian trixie/main i386 python3-pytest all 7.4.4-3 [239 kB] Get: 180 http://deb.debian.org/debian trixie/main i386 python3-yaml i386 6.0.1-2 [176 kB] Fetched 148 MB in 3s (52.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed dpkg: libdb5.3:i386: dependency problems, but removing anyway as you requested: libperl5.38:i386 depends on libdb5.3. libpam-modules:i386 depends on libdb5.3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19885 files and directories currently installed.) Removing libdb5.3:i386 (5.3.28+dfsg2-4+b1) ... Selecting previously unselected package libdb5.3t64:i386. (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19884 files and directories currently installed.) Removing libssl3:i386 (3.1.5-1) ... Selecting previously unselected package libssl3t64:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19871 files and directories currently installed.) Preparing to unpack .../libssl3t64_3.2.1-3_i386.deb ... Unpacking libssl3t64:i386 (3.2.1-3) ... Setting up libssl3t64:i386 (3.2.1-3) ... Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19886 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.9-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.2-1_i386.deb ... Unpacking libexpat1:i386 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_i386.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:i386 (3.11.9-1) ... Setting up libexpat1:i386 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20202 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_i386.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-3_all.deb ... Unpacking tzdata (2024a-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../5-libreadline8t64_8.2-4_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:i386. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_i386.deb ... Unpacking libpython3.11-stdlib:i386 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_i386.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21194 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_i386.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:i386. 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Preparing to unpack .../007-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../010-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../011-groff-base_1.23.0-3+b1_i386.deb ... Unpacking groff-base (1.23.0-3+b1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../012-bsdextrautils_2.39.3-6_i386.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:i386. 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Selecting previously unselected package libtcl8.6:i386. Preparing to unpack .../020-libtcl8.6_8.6.14+dfsg-1_i386.deb ... Unpacking libtcl8.6:i386 (8.6.14+dfsg-1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../021-libbrotli1_1.1.0-2+b3_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b3) ... Selecting previously unselected package libpng16-16t64:i386. Preparing to unpack .../022-libpng16-16t64_1.6.43-5_i386.deb ... Unpacking libpng16-16t64:i386 (1.6.43-5) ... Selecting previously unselected package libfreetype6:i386. Preparing to unpack .../023-libfreetype6_2.13.2+dfsg-1+b4_i386.deb ... Unpacking libfreetype6:i386 (2.13.2+dfsg-1+b4) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../026-fontconfig-config_2.15.0-1.1_i386.deb ... Unpacking fontconfig-config (2.15.0-1.1) ... Selecting previously unselected package libfontconfig1:i386. Preparing to unpack .../027-libfontconfig1_2.15.0-1.1_i386.deb ... Unpacking libfontconfig1:i386 (2.15.0-1.1) ... Selecting previously unselected package libxau6:i386. Preparing to unpack .../028-libxau6_1%3a1.0.9-1+b1_i386.deb ... Unpacking libxau6:i386 (1:1.0.9-1+b1) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../029-libbsd0_0.12.2-1_i386.deb ... Unpacking libbsd0:i386 (0.12.2-1) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../030-libxdmcp6_1%3a1.1.2-3+b1_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.2-3+b1) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../031-libxcb1_1.15-1_i386.deb ... Unpacking libxcb1:i386 (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../032-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) ... Selecting previously unselected package libx11-6:i386. Preparing to unpack .../033-libx11-6_2%3a1.8.7-1+b1_i386.deb ... Unpacking libx11-6:i386 (2:1.8.7-1+b1) ... Selecting previously unselected package libxrender1:i386. Preparing to unpack .../034-libxrender1_1%3a0.9.10-1.1+b1_i386.deb ... Unpacking libxrender1:i386 (1:0.9.10-1.1+b1) ... Selecting previously unselected package libxft2:i386. Preparing to unpack .../035-libxft2_2.3.6-1+b1_i386.deb ... Unpacking libxft2:i386 (2.3.6-1+b1) ... Selecting previously unselected package libxext6:i386. Preparing to unpack .../036-libxext6_2%3a1.3.4-1+b1_i386.deb ... Unpacking libxext6:i386 (2:1.3.4-1+b1) ... Selecting previously unselected package x11-common. Preparing to unpack .../037-x11-common_1%3a7.7+23_all.deb ... Unpacking x11-common (1:7.7+23) ... 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Unpacking python3-matplotlib (3.6.3-1+b2) ... Selecting previously unselected package python3-pandas-lib:i386. Preparing to unpack .../149-python3-pandas-lib_2.1.4+dfsg-5_i386.deb ... Unpacking python3-pandas-lib:i386 (2.1.4+dfsg-5) ... Selecting previously unselected package python3-pandas. Preparing to unpack .../150-python3-pandas_2.1.4+dfsg-5_all.deb ... Unpacking python3-pandas (2.1.4+dfsg-5) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../151-python3-certifi_2023.11.17-1_all.deb ... Unpacking python3-certifi (2023.11.17-1) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../152-python3-charset-normalizer_3.3.2-1_all.deb ... Unpacking python3-charset-normalizer (3.3.2-1) ... Selecting previously unselected package python3-idna. Preparing to unpack .../153-python3-idna_3.6-2_all.deb ... Unpacking python3-idna (3.6-2) ... Selecting previously unselected package python3-urllib3. 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Selecting previously unselected package python3-exceptiongroup. Preparing to unpack .../160-python3-exceptiongroup_1.2.1-1_all.deb ... Unpacking python3-exceptiongroup (1.2.1-1) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../161-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../162-python3-pluggy_1.5.0-1_all.deb ... Unpacking python3-pluggy (1.5.0-1) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../163-python3-pysam_0.22.0+ds-1+b1_i386.deb ... Unpacking python3-pysam (0.22.0+ds-1+b1) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../164-python3-pytest_7.4.4-3_all.deb ... Unpacking python3-pytest (7.4.4-3) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../165-python3-yaml_6.0.1-2_i386.deb ... Unpacking python3-yaml (6.0.1-2) ... Setting up libhtscodecs2:i386 (1.6.0-1+b1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:i386 (1.5.7-2) ... Setting up libgraphite2-3:i386 (1.3.14-2) ... Setting up liblcms2-2:i386 (2.14-2+b1) ... Setting up libsharpyuv0:i386 (1.3.2-0.4+b1) ... Setting up libxau6:i386 (1:1.0.9-1+b1) ... Setting up libicu72:i386 (72.1-4+b1) ... Setting up liblerc4:i386 (4.0.0+ds-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:i386 (0.2.5-1+b1) ... Setting up fonts-lyx (2.4.0~RC4-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:i386 (1.1.0-2+b3) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up libpython3.12-minimal:i386 (3.12.3-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libpsl5t64:i386 (0.21.2-1.1) ... Setting up libnghttp2-14:i386 (1.59.0-1) ... Setting up libdeflate0:i386 (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libqhull-r8.0:i386 (2020.2-6+b1) ... Setting up libblis4-serial:i386 (0.9.0-1+b2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blis-serial/libblis.so.4 to provide /usr/lib/i386-linux-gnu/libblis.so.4 (libblis.so.4-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/blis-serial/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up file (1:5.45-3) ... Setting up libjbig0:i386 (2.1-6.1+b1) ... Setting up libelf1t64:i386 (0.191-1+b1) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-4+b1) ... Setting up tzdata (2024a-3) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Apr 30 17:42:15 UTC 2024. Universal Time is now: Tue Apr 30 17:42:15 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:i386 (2.78.4-7) ... No schema files found: doing nothing. Setting up libexpat1-dev:i386 (2.6.2-1) ... Setting up libjpeg62-turbo:i386 (1:2.1.5-2+b2) ... Setting up libx11-data (2:1.8.7-1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libfribidi0:i386 (1.0.13-3+b1) ... Setting up libimagequant0:i386 (2.18.0-1+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:i386 (1.6.43-5) ... Setting up libtcl8.6:i386 (8.6.14+dfsg-1) ... Setting up autopoint (0.21-14) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-4+b1) ... Setting up libgfortran5:i386 (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:i386 (1.3.2-0.4+b1) ... Setting up liblzma-dev:i386 (5.6.1+really5.4.5-1) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libtiff6:i386 (4.5.1+git230720-4) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up libopenjp2-7:i386 (2.5.0-2+b3) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up libssh2-1t64:i386 (1.11.0-4.1+b2) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.6.3-1) ... Setting up openssl (3.2.1-3) ... Setting up libwebpmux3:i386 (1.3.2-0.4+b1) ... Setting up libbsd0:i386 (0.12.2-1) ... Setting up libdeflate-dev:i386 (1.20-1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.3-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3+b1) ... Setting up liblapack3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libxcb1:i386 (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:i386 (1.3.2-0.4+b1) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:i386 (2.13.2+dfsg-1+b4) ... Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up libreadline8t64:i386 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up libxslt1.1:i386 (1.1.35-1+b1) ... Setting up libx11-6:i386 (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:i386 (8.3.0-2+b1) ... Setting up libfontconfig1:i386 (2.15.0-1.1) ... Setting up liblbfgsb0:i386 (3.0+dfsg.4-1+b1) ... Setting up libpython3.12-stdlib:i386 (3.12.3-1) ... Setting up libxrender1:i386 (1:0.9.10-1.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:i386 (3.11.9-1) ... Setting up python3.12 (3.12.3-1) ... Setting up libpython3.11t64:i386 (3.11.9-1) ... Setting up libcurl3t64-gnutls:i386 (8.7.1-3) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up libcurl4-gnutls-dev:i386 (8.7.1-3) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3.12t64:i386 (3.12.3-1) ... Setting up libpython3.11-dev:i386 (3.11.9-1) ... Setting up libraqm0:i386 (0.10.1-1+b1) ... Setting up libxss1:i386 (1:1.2.3-1+b1) ... Setting up libpython3-stdlib:i386 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up libxft2:i386 (2.3.6-1+b1) ... Setting up libhts3:i386 (1.19+ds-1) ... Setting up libpython3-dev:i386 (3.11.8-1) ... Setting up python3.11-dev (3.11.9-1) ... Setting up libtk8.6:i386 (8.6.14-1) ... Setting up libhts-dev:i386 (1.19+ds-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up libpython3.12-dev:i386 (3.12.3-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-pil:i386 (10.3.0-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up libpython3-all-dev:i386 (3.11.8-1) ... Setting up python3-brotli (1.1.0-2+b3) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.5-1) ... Setting up python3-idna (3.6-2) ... Setting up python3.12-dev (3.12.3-1) ... Setting up cython3 (3.0.10+dfsg-5) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-lxml:i386 (5.1.0-1) ... Setting up python3-exceptiongroup (1.2.1-1) ... Setting up python3-munkres (1.1.4-3) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-1) ... python3.12: can't get files for byte-compilation Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.12-7) ... Setting up python3-attr (23.2.0-2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up python3-pysam (0.22.0+ds-1+b1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-lz4 (4.0.2+dfsg-1+b3) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-pytest (7.4.4-3) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3-all (3.11.8-1) ... Setting up python3-yaml (6.0.1-2) ... Setting up python3-tk:i386 (3.12.3-1) ... Setting up python3-click (8.1.7-1) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-pil.imagetk:i386 (10.3.0-2) ... Setting up python3-dev (3.11.8-1) ... Setting up python3-requests (2.31.0+dfsg-1) ... Setting up python3-numpy (1:1.24.2-2) ... Setting up python3-contourpy (1.0.7-3) ... Setting up dh-python (6.20240422) ... Setting up python3-all-dev (3.11.8-1) ... Setting up python3-scipy (1.11.4-6) ... Setting up python3-pandas-lib:i386 (2.1.4+dfsg-5) ... Setting up python3-pandas (2.1.4+dfsg-5) ... Setting up python3-fonttools (4.46.0-1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-1+b2) ... Setting up python3-bioframe (0.4.1-1) ... Processing triggers for libc-bin (2.37-18) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pairtools-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pairtools_1.0.3-1_source.changes dpkg-buildpackage: info: source package pairtools dpkg-buildpackage: info: source version 1.0.3-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with numpy3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pairtools-1.0.3' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.pxd tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling /build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.pyx because it changed. Compiling /build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.pyx because it changed. Compiling /build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.pyx because it changed. [1/3] Cythonizing /build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.pyx [2/3] Cythonizing /build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.pyx [3/3] Cythonizing /build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.pyx running clean removing '/build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -f pairtools/lib/*.c pairtools/lib/regions.cpp make[1]: Leaving directory '/build/reproducible-path/pairtools-1.0.3' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with numpy3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.pxd tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling /build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.pyx because it changed. Compiling /build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.pyx because it changed. Compiling /build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.pyx because it changed. [1/3] Cythonizing /build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.pyx [2/3] Cythonizing /build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.pyx [3/3] Cythonizing /build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.pyx running config I: pybuild base:311: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build running build running build_py creating /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools copying pairtools/__init__.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools copying pairtools/__main__.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools copying pairtools/_logging.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools creating /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/headerops.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/stats.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/restrict.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/filterbycov.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/dedup.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/pairsam_format.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/__init__.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/fileio.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/select.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/phase.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/parse.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib copying pairtools/lib/scaling.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib creating /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/stats.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/restrict.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/filterbycov.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/dedup.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/merge.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/parse2.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/__init__.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/flip.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/header.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/select.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/phase.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/split.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/markasdup.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/parse.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/sort.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/scaling.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/sample.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli running build_ext building 'pairtools.lib.regions' extension creating build creating build/temp.linux-i686-cpython-312 creating build/temp.linux-i686-cpython-312/build creating build/temp.linux-i686-cpython-312/build/reproducible-path creating build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.0.3 creating build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.0.3/pairtools creating build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.0.3/pairtools/lib i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.cpp -o build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from /usr/include/python3.12/numpy/ndarraytypes.h:1940, from /usr/include/python3.12/numpy/ndarrayobject.h:12, from /usr/include/python3.12/numpy/arrayobject.h:5, from /build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.cpp:1302: /usr/include/python3.12/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/regions.cpython-312-i386-linux-gnu.so building 'pairtools.lib.dedup_cython' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.c -o build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.o In file included from /usr/include/python3.12/numpy/ndarraytypes.h:1940, from /usr/include/python3.12/numpy/ndarrayobject.h:12, from /usr/include/python3.12/numpy/arrayobject.h:5, from /build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.c:1240: /usr/include/python3.12/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/dedup_cython.cpython-312-i386-linux-gnu.so building 'pairtools.lib.parse_pysam' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipairtools/lib -I/usr/lib/python3/dist-packages/pysam -I/usr/lib/python3/dist-packages/pysam/include/samtools -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.c -o build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.o i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/parse_pysam.cpython-312-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libctabixproxies.cpython-312-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcfaidx.cpython-312-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcsamfile.cpython-312-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcvcf.cpython-312-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcbcf.cpython-312-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libctabix.cpython-312-i386-linux-gnu.so I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools copying pairtools/__init__.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools copying pairtools/__main__.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools copying pairtools/_logging.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools creating /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/headerops.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/stats.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/restrict.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/filterbycov.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/dedup.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/pairsam_format.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/__init__.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/fileio.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/select.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/phase.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/parse.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib copying pairtools/lib/scaling.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib creating /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/stats.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/restrict.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/filterbycov.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/dedup.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/merge.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/parse2.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/__init__.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/flip.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/header.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/select.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/phase.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/split.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/markasdup.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/parse.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/sort.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/scaling.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli copying pairtools/cli/sample.py -> /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli running build_ext building 'pairtools.lib.regions' extension creating build/temp.linux-i686-cpython-311 creating build/temp.linux-i686-cpython-311/build creating build/temp.linux-i686-cpython-311/build/reproducible-path creating build/temp.linux-i686-cpython-311/build/reproducible-path/pairtools-1.0.3 creating build/temp.linux-i686-cpython-311/build/reproducible-path/pairtools-1.0.3/pairtools creating build/temp.linux-i686-cpython-311/build/reproducible-path/pairtools-1.0.3/pairtools/lib i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.cpp -o build/temp.linux-i686-cpython-311/build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from /usr/include/python3.11/numpy/ndarraytypes.h:1940, from /usr/include/python3.11/numpy/ndarrayobject.h:12, from /usr/include/python3.11/numpy/arrayobject.h:5, from /build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.cpp:1302: /usr/include/python3.11/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/build/reproducible-path/pairtools-1.0.3/pairtools/lib/regions.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/regions.cpython-311-i386-linux-gnu.so building 'pairtools.lib.dedup_cython' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.c -o build/temp.linux-i686-cpython-311/build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.o In file included from /usr/include/python3.11/numpy/ndarraytypes.h:1940, from /usr/include/python3.11/numpy/ndarrayobject.h:12, from /usr/include/python3.11/numpy/arrayobject.h:5, from /build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.c:1240: /usr/include/python3.11/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/build/reproducible-path/pairtools-1.0.3/pairtools/lib/dedup_cython.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/dedup_cython.cpython-311-i386-linux-gnu.so building 'pairtools.lib.parse_pysam' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipairtools/lib -I/usr/lib/python3/dist-packages/pysam -I/usr/lib/python3/dist-packages/pysam/include/samtools -I/usr/include/python3.11 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.c -o build/temp.linux-i686-cpython-311/build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.o i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.0.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/build/reproducible-path/pairtools-1.0.3/pairtools/lib/parse_pysam.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/parse_pysam.cpython-311-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libctabixproxies.cpython-311-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcfaidx.cpython-311-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcsamfile.cpython-311-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcvcf.cpython-311-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcbcf.cpython-311-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libctabix.cpython-311-i386-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pairtools-1.0.3' dh_auto_test -- --system=custom --test-args="export CURPY={interpreter}; \ cd {build_dir} && {interpreter} -m pytest -v" I: pybuild base:311: export CURPY=python3.12; cd /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build && python3.12 -m pytest -v ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-7.4.4, pluggy-1.5.0 -- /usr/bin/python3.12 cachedir: .pytest_cache rootdir: /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build configfile: pytest.ini testpaths: tests collecting ... collected 31 items tests/test_dedup.py::test_mock_pairsam PASSED [ 3%] tests/test_filterbycov.py::test_mock_pairs PASSED [ 6%] tests/test_flip.py::test_flip PASSED [ 9%] tests/test_header.py::test_generate PASSED [ 12%] tests/test_headerops.py::test_make_standard_header PASSED [ 16%] tests/test_headerops.py::test_samheaderops PASSED [ 19%] tests/test_headerops.py::test_merge_pairheaders PASSED [ 22%] tests/test_headerops.py::test_merge_different_pairheaders PASSED [ 25%] tests/test_headerops.py::test_force_merge_pairheaders PASSED [ 29%] tests/test_headerops.py::test_merge_samheaders PASSED [ 32%] tests/test_headerops.py::test_merge_headers PASSED [ 35%] tests/test_markasdup.py::test_mock_pairsam PASSED [ 38%] tests/test_merge.py::test_mock_pairsam PASSED [ 41%] tests/test_parse.py::test_python_version PASSED [ 45%] tests/test_parse.py::test_mock_pysam PASSED [ 48%] tests/test_parse.py::test_mock_pysam_parse_all PASSED [ 51%] tests/test_parse2.py::test_mock_pysam_parse2_read PASSED [ 54%] tests/test_parse2.py::test_mock_pysam_parse2_pair PASSED [ 58%] tests/test_restrict.py::test_restrict PASSED [ 61%] tests/test_scaling.py::test_scaling PASSED [ 64%] tests/test_select.py::test_preserve PASSED [ 67%] tests/test_select.py::test_equal PASSED [ 70%] tests/test_select.py::test_csv PASSED [ 74%] tests/test_select.py::test_wildcard PASSED [ 77%] tests/test_select.py::test_regex PASSED [ 80%] tests/test_select.py::test_chrom_subset PASSED [ 83%] tests/test_select.py::test_remove_columns PASSED [ 87%] tests/test_sort.py::test_mock_pairsam PASSED [ 90%] tests/test_split.py::test_split PASSED [ 93%] tests/test_stats.py::test_mock_pairsam PASSED [ 96%] tests/test_stats.py::test_merge_stats PASSED [100%] =============================== warnings summary =============================== pairtools/lib/fileio.py:2 /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/fileio.py:2: DeprecationWarning: 'pipes' is deprecated and slated for removal in Python 3.13 import pipes pairtools/lib/stats.py:928 /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/stats.py:928: SyntaxWarning: invalid escape sequence '\w' """Extract the name of the tile for each read name in the series -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================== 31 passed, 2 warnings in 71.77s (0:01:11) =================== I: pybuild base:311: export CURPY=python3.11; cd /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build && python3.11 -m pytest -v ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-7.4.4, pluggy-1.5.0 -- /usr/bin/python3.11 cachedir: .pytest_cache rootdir: /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build configfile: pytest.ini testpaths: tests collecting ... collected 31 items tests/test_dedup.py::test_mock_pairsam PASSED [ 3%] tests/test_filterbycov.py::test_mock_pairs PASSED [ 6%] tests/test_flip.py::test_flip PASSED [ 9%] tests/test_header.py::test_generate PASSED [ 12%] tests/test_headerops.py::test_make_standard_header PASSED [ 16%] tests/test_headerops.py::test_samheaderops PASSED [ 19%] tests/test_headerops.py::test_merge_pairheaders PASSED [ 22%] tests/test_headerops.py::test_merge_different_pairheaders PASSED [ 25%] tests/test_headerops.py::test_force_merge_pairheaders PASSED [ 29%] tests/test_headerops.py::test_merge_samheaders PASSED [ 32%] tests/test_headerops.py::test_merge_headers PASSED [ 35%] tests/test_markasdup.py::test_mock_pairsam PASSED [ 38%] tests/test_merge.py::test_mock_pairsam PASSED [ 41%] tests/test_parse.py::test_python_version PASSED [ 45%] tests/test_parse.py::test_mock_pysam PASSED [ 48%] tests/test_parse.py::test_mock_pysam_parse_all PASSED [ 51%] tests/test_parse2.py::test_mock_pysam_parse2_read PASSED [ 54%] tests/test_parse2.py::test_mock_pysam_parse2_pair PASSED [ 58%] tests/test_restrict.py::test_restrict PASSED [ 61%] tests/test_scaling.py::test_scaling PASSED [ 64%] tests/test_select.py::test_preserve PASSED [ 67%] tests/test_select.py::test_equal PASSED [ 70%] tests/test_select.py::test_csv PASSED [ 74%] tests/test_select.py::test_wildcard PASSED [ 77%] tests/test_select.py::test_regex PASSED [ 80%] tests/test_select.py::test_chrom_subset PASSED [ 83%] tests/test_select.py::test_remove_columns PASSED [ 87%] tests/test_sort.py::test_mock_pairsam PASSED [ 90%] tests/test_split.py::test_split PASSED [ 93%] tests/test_stats.py::test_mock_pairsam PASSED [ 96%] tests/test_stats.py::test_merge_stats PASSED [100%] =============================== warnings summary =============================== pairtools/lib/fileio.py:2 /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/fileio.py:2: DeprecationWarning: 'pipes' is deprecated and slated for removal in Python 3.13 import pipes pairtools/lib/stats.py:928 /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/stats.py:928: DeprecationWarning: invalid escape sequence '\w' """Extract the name of the tile for each read name in the series -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================== 31 passed, 2 warnings in 81.03s (0:01:21) =================== make[1]: Leaving directory '/build/reproducible-path/pairtools-1.0.3' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext running install_lib creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12 creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/.pytest_cache/README.md -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/.pytest_cache/.gitignore -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache/v creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/mock.merged_chromsizes.stats -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/headerops.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/stats.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/restrict.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/filterbycov.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/dedup_cython.cpython-312-i386-linux-gnu.so -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/dedup.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/parse_pysam.cpython-312-i386-linux-gnu.so -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/pairsam_format.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/regions.cpython-312-i386-linux-gnu.so -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__init__.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/fileio.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/select.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/phase.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/parse.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/filterbycov.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/dedup.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/headerops.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/phase.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/stats.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/scaling.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/select.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/pairsam_format.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/restrict.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/parse.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/fileio.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/lib/scaling.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/__init__.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/__main__.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/stats.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/restrict.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/filterbycov.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/dedup.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/merge.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/parse2.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__init__.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/flip.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/header.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/select.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/phase.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/split.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/markasdup.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/parse.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/filterbycov.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/sample.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/merge.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/dedup.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/phase.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/parse2.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/markasdup.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/header.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/stats.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/sort.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/flip.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/scaling.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/select.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/restrict.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/parse.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/split.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/sort.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/scaling.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/cli/sample.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/_logging.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/__pycache__/__main__.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/__pycache__/_logging.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/pairtools/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/mock.stats -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/mock.no_chromsizes.stats -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/mock.merged_no_chromsizes.stats -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.12/build/mock.merged_mixed.stats -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/headerops.py to headerops.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/stats.py to stats.cpython-312.pyc /usr/lib/python3.12/dist-packages/pairtools/lib/stats.py:928: SyntaxWarning: invalid escape sequence '\w' byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/restrict.py to restrict.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/filterbycov.py to filterbycov.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/dedup.py to dedup.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/pairsam_format.py to pairsam_format.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/fileio.py to fileio.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/select.py to select.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/phase.py to phase.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/parse.py to parse.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/scaling.py to scaling.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/__main__.py to __main__.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/stats.py to stats.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/restrict.py to restrict.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/filterbycov.py to filterbycov.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/dedup.py to dedup.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/merge.py to merge.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/parse2.py to parse2.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/flip.py to flip.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/header.py to header.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/select.py to select.cpython-312.pyc /usr/lib/python3.12/dist-packages/pairtools/cli/select.py:90: SyntaxWarning: invalid escape sequence '\d' byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/phase.py to phase.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/split.py to split.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/markasdup.py to markasdup.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/parse.py to parse.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/sort.py to sort.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/scaling.py to scaling.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/sample.py to sample.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/_logging.py to _logging.cpython-312.pyc running install_egg_info running egg_info creating pairtools.egg-info writing pairtools.egg-info/PKG-INFO writing dependency_links to pairtools.egg-info/dependency_links.txt writing entry points to pairtools.egg-info/entry_points.txt writing requirements to pairtools.egg-info/requires.txt writing top-level names to pairtools.egg-info/top_level.txt writing manifest file 'pairtools.egg-info/SOURCES.txt' reading manifest file 'pairtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'doc/_build' no previously-included directories found matching 'doc/_templates' warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.deps/*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'pairtools.egg-info/SOURCES.txt' Copying pairtools.egg-info to /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools-1.0.3.egg-info Skipping SOURCES.txt running install_scripts Installing pairtools script to /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/bin I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_ext running install_lib creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11 creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/.pytest_cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/.pytest_cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/.pytest_cache/README.md -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/.pytest_cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/.pytest_cache/.gitignore -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/.pytest_cache creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/.pytest_cache/v creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/mock.merged_chromsizes.stats -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/headerops.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/stats.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/dedup_cython.cpython-311-i386-linux-gnu.so -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/restrict.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/regions.cpython-311-i386-linux-gnu.so -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/filterbycov.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/dedup.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/pairsam_format.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/parse_pysam.cpython-311-i386-linux-gnu.so -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__init__.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/fileio.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/select.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/phase.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/parse.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/filterbycov.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/scaling.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/pairsam_format.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/headerops.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/stats.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/dedup.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/parse.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/restrict.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/fileio.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/select.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/__pycache__/phase.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/lib/scaling.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/__init__.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/__main__.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/stats.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/restrict.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/filterbycov.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/dedup.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/merge.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/parse2.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__init__.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/flip.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/header.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/select.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/phase.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/split.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/markasdup.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/parse.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/filterbycov.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/scaling.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/stats.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/sort.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/dedup.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/flip.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/parse.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/merge.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/header.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/restrict.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/markasdup.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/parse2.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/select.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/sample.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/split.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/__pycache__/phase.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/sort.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/scaling.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/cli/sample.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/_logging.py -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools creating /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/__pycache__/_logging.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/__pycache__/__main__.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/pairtools/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/__pycache__ copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/mock.stats -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/mock.no_chromsizes.stats -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/mock.merged_no_chromsizes.stats -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages copying /build/reproducible-path/pairtools-1.0.3/.pybuild/cpython3_3.11/build/mock.merged_mixed.stats -> /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/headerops.py to headerops.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/stats.py to stats.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/restrict.py to restrict.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/filterbycov.py to filterbycov.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/dedup.py to dedup.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/pairsam_format.py to pairsam_format.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/fileio.py to fileio.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/select.py to select.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/phase.py to phase.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/parse.py to parse.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/lib/scaling.py to scaling.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/__main__.py to __main__.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/stats.py to stats.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/restrict.py to restrict.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/filterbycov.py to filterbycov.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/dedup.py to dedup.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/merge.py to merge.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/parse2.py to parse2.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/flip.py to flip.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/header.py to header.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/select.py to select.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/phase.py to phase.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/split.py to split.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/markasdup.py to markasdup.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/parse.py to parse.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/sort.py to sort.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/scaling.py to scaling.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/cli/sample.py to sample.cpython-311.pyc byte-compiling /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools/_logging.py to _logging.cpython-311.pyc running install_egg_info running egg_info writing pairtools.egg-info/PKG-INFO writing dependency_links to pairtools.egg-info/dependency_links.txt writing entry points to pairtools.egg-info/entry_points.txt writing requirements to pairtools.egg-info/requires.txt writing top-level names to pairtools.egg-info/top_level.txt reading manifest file 'pairtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'doc/_build' no previously-included directories found matching 'doc/_templates' warning: no previously-included files matching '__pycache__/*' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.git*' found anywhere in distribution warning: no previously-included files matching '.deps/*' found anywhere in distribution warning: no previously-included files matching '.DS_Store' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'pairtools.egg-info/SOURCES.txt' Copying pairtools.egg-info to /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/lib/python3.11/dist-packages/pairtools-1.0.3.egg-info Skipping SOURCES.txt running install_scripts Installing pairtools script to /build/reproducible-path/pairtools-1.0.3/debian/python3-pairtools/usr/bin debian/rules execute_after_dh_auto_install make[1]: Entering directory '/build/reproducible-path/pairtools-1.0.3' find debian/ -name '*.stats' -delete make[1]: Leaving directory '/build/reproducible-path/pairtools-1.0.3' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_numpy3 -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-pairtools-examples: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package python3-pairtools-examples: substitution variable ${python3:Depends} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pairtools' in '../python3-pairtools_1.0.3-1_i386.deb'. dpkg-deb: building package 'python3-pairtools-examples' in '../python3-pairtools-examples_1.0.3-1_i386.deb'. dpkg-deb: building package 'python3-pairtools-dbgsym' in '../python3-pairtools-dbgsym_1.0.3-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../pairtools_1.0.3-1_i386.buildinfo dpkg-genchanges --build=binary -O../pairtools_1.0.3-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3910 and its subdirectories I: Current time: Tue Apr 30 05:48:24 -12 2024 I: pbuilder-time-stamp: 1714499304 Tue Apr 30 17:48:25 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Tue Apr 30 17:48:25 UTC 2024 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Tue Apr 30 17:52:13 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. Tue Apr 30 17:52:14 UTC 2024 I: pairtools_1.0.3-1_i386.changes: Format: 1.8 Date: Mon, 11 Dec 2023 15:32:05 +0100 Source: pairtools Binary: python3-pairtools python3-pairtools-dbgsym python3-pairtools-examples Architecture: i386 Version: 1.0.3-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python3-pairtools - Framework to process sequencing data from a Hi-C experiment python3-pairtools-examples - Process sequencing data from a Hi-C experiment (examples) Closes: 1057997 Changes: pairtools (1.0.3-1) unstable; urgency=medium . * Team upload. * New upstream version * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * No runtime dependency from cython Closes: #1057997 Checksums-Sha1: 0212f77ff08ffabb18a128dc60ae10d688a763fd 10466 pairtools_1.0.3-1_i386.buildinfo f1888607a5958a909f5a8917f01a3649d246623e 1379440 python3-pairtools-dbgsym_1.0.3-1_i386.deb f8d1196e900e9c18a14d7eeff837823f8db47433 808972 python3-pairtools-examples_1.0.3-1_i386.deb 113c2d9a1a85e00da40f3223b56c90c0f4a6639b 274440 python3-pairtools_1.0.3-1_i386.deb Checksums-Sha256: e79be2386b07242d1d40dafb6faf05ef2a391f52b2812b7d808688e3eac836b9 10466 pairtools_1.0.3-1_i386.buildinfo 22fdb2651e9138940a7e17b894947a7a4a5cdcc7e30608f9778bb8a87bdd4ebe 1379440 python3-pairtools-dbgsym_1.0.3-1_i386.deb 47cdbd69243797c7b13a740cd30a2697483436429ac89bc37def0d2489b071a4 808972 python3-pairtools-examples_1.0.3-1_i386.deb 18051e05a676222854904a94ce332af94ed4623a0bacb0f1fc1508005fd20ec0 274440 python3-pairtools_1.0.3-1_i386.deb Files: 1c7b59cfba048eeac520de8640b41142 10466 python optional pairtools_1.0.3-1_i386.buildinfo 897f68cf6fa6a5fa2fac45391636b3b5 1379440 debug optional python3-pairtools-dbgsym_1.0.3-1_i386.deb d00117255efa80008a57293f5a9f2a6b 808972 python optional python3-pairtools-examples_1.0.3-1_i386.deb fc336f374c22ff10c9f5c98c6024fba3 274440 python optional python3-pairtools_1.0.3-1_i386.deb Tue Apr 30 17:52:15 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_5-18914.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.mro2lwSG/pairtools_1.0.3-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.mro2lwSG/pairtools_1.0.3-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.mro2lwSG/pairtools_1.0.3-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.mro2lwSG/b1/pairtools_1.0.3-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.mro2lwSG/b2/pairtools_1.0.3-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.359s) 0.359s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.044s) 0.044s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 679ms CPU time consumed: 678ms Tue Apr 30 17:52:16 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Tue Apr 30 17:52:16 UTC 2024 I: pairtools from trixie built successfully and reproducibly on i386. Tue Apr 30 17:52:17 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Apr 30 17:52:17 UTC 2024 I: Submitting 12K b1/pairtools_1.0.3-1_i386.buildinfo.asc Tue Apr 30 17:52:19 UTC 2024 I: Submitting 12K b2/pairtools_1.0.3-1_i386.buildinfo.asc Tue Apr 30 17:52:21 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Apr 30 17:52:21 UTC 2024 I: Done submitting .buildinfo files. Tue Apr 30 17:52:21 UTC 2024 I: Removing signed pairtools_1.0.3-1_i386.buildinfo.asc files: removed './b1/pairtools_1.0.3-1_i386.buildinfo.asc' removed './b2/pairtools_1.0.3-1_i386.buildinfo.asc'