Tue Dec 24 06:08:11 UTC 2024  I: starting to build nxtrim/trixie/i386 on jenkins on '2024-12-24 06:08'
Tue Dec 24 06:08:11 UTC 2024  I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_11/40260/console.log
Tue Dec 24 06:08:11 UTC 2024  I: Downloading source for trixie/nxtrim=0.4.3+dfsg-4
--2024-12-24 06:08:11--  http://deb.debian.org/debian/pool/main/n/nxtrim/nxtrim_0.4.3%2bdfsg-4.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 1983 (1.9K) [text/prs.lines.tag]
Saving to: ‘nxtrim_0.4.3+dfsg-4.dsc’

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2024-12-24 06:08:11 (281 MB/s) - ‘nxtrim_0.4.3+dfsg-4.dsc’ saved [1983/1983]

Tue Dec 24 06:08:11 UTC 2024  I: nxtrim_0.4.3+dfsg-4.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 3.0 (quilt)
Source: nxtrim
Binary: nxtrim
Architecture: any
Version: 0.4.3+dfsg-4
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Nilesh Patra <nilesh@debian.org>
Homepage: https://github.com/sequencing/NxTrim
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/nxtrim
Vcs-Git: https://salsa.debian.org/med-team/nxtrim.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), zlib1g-dev
Package-List:
 nxtrim deb science optional arch=any
Checksums-Sha1:
 9a4f27ce5abe719114f9a9309e5e15118ed63c16 65903 nxtrim_0.4.3+dfsg.orig.tar.gz
 4799ffd78558087a46f8612aad867eb739974a26 5092 nxtrim_0.4.3+dfsg-4.debian.tar.xz
Checksums-Sha256:
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 a7972e7a9e9beab905f6302b1cc20f483de4637cd6d8d2dfafe462272722f326 5092 nxtrim_0.4.3+dfsg-4.debian.tar.xz
Files:
 be88d0019dd82dc1696dfd2d6c185c47 65903 nxtrim_0.4.3+dfsg.orig.tar.gz
 d115a4261a399956cb2d527401acf856 5092 nxtrim_0.4.3+dfsg-4.debian.tar.xz

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Tue Dec 24 06:08:11 UTC 2024  I: Checking whether the package is not for us
Tue Dec 24 06:08:11 UTC 2024  I: Starting 1st build on remote node ionos6-i386.debian.net.
Tue Dec 24 06:08:11 UTC 2024  I: Preparing to do remote build '1' on ionos6-i386.debian.net.
Tue Dec 24 06:08:43 UTC 2024  I: Deleting $TMPDIR on ionos6-i386.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Mon Jan 26 00:31:13 -12 2026
I: pbuilder-time-stamp: 1769430673
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [nxtrim_0.4.3+dfsg-4.dsc]
I: copying [./nxtrim_0.4.3+dfsg.orig.tar.gz]
I: copying [./nxtrim_0.4.3+dfsg-4.debian.tar.xz]
I: Extracting source
gpgv: Signature made Fri Dec 20 21:13:49 2024 
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./nxtrim_0.4.3+dfsg-4.dsc: no acceptable signature found
dpkg-source: info: extracting nxtrim in nxtrim-0.4.3+dfsg
dpkg-source: info: unpacking nxtrim_0.4.3+dfsg.orig.tar.gz
dpkg-source: info: unpacking nxtrim_0.4.3+dfsg-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying do-not-remove-non-existing.patch
dpkg-source: info: applying make-script-executable.patch
dpkg-source: info: applying hardening.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/37023/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='i386'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 '
  DISTRIBUTION='trixie'
  HOME='/root'
  HOST_ARCH='i386'
  IFS=' 	
  '
  INVOCATION_ID='31b547e4654c4ee9b9b5469f86b1c9a1'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  LD_LIBRARY_PATH='/usr/lib/libeatmydata'
  LD_PRELOAD='libeatmydata.so'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='37023'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.lGkrZ053/pbuilderrc_NInu --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.lGkrZ053/b1 --logfile b1/build.log nxtrim_0.4.3+dfsg-4.dsc'
  SUDO_GID='112'
  SUDO_UID='107'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://213.165.73.152:3128'
I: uname -a
  Linux ionos6-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Nov 22  2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/37023/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), zlib1g-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19953 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
  Package zlib1g-dev is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 
0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded.
Need to get 21.0 MB of archives. After unpacking 77.1 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB]
Get: 2 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB]
Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB]
Get: 4 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB]
Get: 5 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-3 [201 kB]
Get: 6 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB]
Get: 7 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-6 [1198 kB]
Get: 8 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-12 [95.9 kB]
Get: 9 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB]
Get: 10 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB]
Get: 11 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB]
Get: 12 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB]
Get: 13 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB]
Get: 15 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-3 [723 kB]
Get: 16 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB]
Get: 17 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-8 [517 kB]
Get: 18 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 21 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 22 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB]
Get: 23 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB]
Get: 24 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5+b1 [9583 kB]
Get: 25 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB]
Get: 26 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-3 [1631 kB]
Get: 27 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 28 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 29 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB]
Get: 30 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB]
Fetched 21.0 MB in 1s (34.5 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sensible-utils.
(Reading database ... 
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(Reading database ... 100%
(Reading database ... 19953 files and directories currently installed.)
Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_i386.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:i386.
Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_i386.deb ...
Unpacking libmagic1t64:i386 (1:5.45-3+b1) ...
Selecting previously unselected package file.
Preparing to unpack .../03-file_1%3a5.45-3+b1_i386.deb ...
Unpacking file (1:5.45-3+b1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../04-gettext-base_0.22.5-3_i386.deb ...
Unpacking gettext-base (0.22.5-3) ...
Selecting previously unselected package libuchardet0:i386.
Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_i386.deb ...
Unpacking libuchardet0:i386 (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../06-groff-base_1.23.0-6_i386.deb ...
Unpacking groff-base (1.23.0-6) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../07-bsdextrautils_2.40.2-12_i386.deb ...
Unpacking bsdextrautils (2.40.2-12) ...
Selecting previously unselected package libpipeline1:i386.
Preparing to unpack .../08-libpipeline1_1.5.8-1_i386.deb ...
Unpacking libpipeline1:i386 (1.5.8-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../09-man-db_2.13.0-1_i386.deb ...
Unpacking man-db (2.13.0-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../10-m4_1.4.19-4_i386.deb ...
Unpacking m4 (1.4.19-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../11-autoconf_2.72-3_all.deb ...
Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../14-autopoint_0.22.5-3_all.deb ...
Unpacking autopoint (0.22.5-3) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ...
Unpacking libdebhelper-perl (13.20) ...
Selecting previously unselected package libtool.
Preparing to unpack .../16-libtool_2.4.7-8_all.deb ...
Unpacking libtool (2.4.7-8) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../17-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.14.0-1) ...
Selecting previously unselected package libelf1t64:i386.
Preparing to unpack .../21-libelf1t64_0.192-4_i386.deb ...
Unpacking libelf1t64:i386 (0.192-4) ...
Selecting previously unselected package dwz.
Preparing to unpack .../22-dwz_0.15-1+b1_i386.deb ...
Unpacking dwz (0.15-1+b1) ...
Selecting previously unselected package libicu72:i386.
Preparing to unpack .../23-libicu72_72.1-5+b1_i386.deb ...
Unpacking libicu72:i386 (72.1-5+b1) ...
Selecting previously unselected package libxml2:i386.
Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_i386.deb ...
Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../25-gettext_0.22.5-3_i386.deb ...
Unpacking gettext (0.22.5-3) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ...
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Unpacking debhelper (13.20) ...
Selecting previously unselected package zlib1g-dev:i386.
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Unpacking zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libpipeline1:i386 (1.5.8-1) ...
Setting up libicu72:i386 (72.1-5+b1) ...
Setting up bsdextrautils (2.40.2-12) ...
Setting up libmagic-mgc (1:5.45-3+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.20) ...
Setting up libmagic1t64:i386 (1:5.45-3+b1) ...
Setting up gettext-base (0.22.5-3) ...
Setting up m4 (1.4.19-4) ...
Setting up file (1:5.45-3+b1) ...
Setting up libelf1t64:i386 (0.192-4) ...
Setting up autotools-dev (20220109.1) ...
Setting up autopoint (0.22.5-3) ...
Setting up autoconf (2.72-3) ...
Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up libuchardet0:i386 (0.0.8-1+b2) ...
Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
Setting up gettext (0.22.5-3) ...
Setting up libtool (2.4.7-8) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.14.0-1) ...
Setting up groff-base (1.23.0-6) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up debhelper (13.20) ...
Processing triggers for libc-bin (2.40-4) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/nxtrim-0.4.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../nxtrim_0.4.3+dfsg-4_source.changes
dpkg-buildpackage: info: source package nxtrim
dpkg-buildpackage: info: source version 0.4.3+dfsg-4
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
 debian/rules clean
dh clean
   dh_auto_clean
	make -j22 clean
make[1]: Entering directory '/build/reproducible-path/nxtrim-0.4.3+dfsg'
make[1]: git: No such file or directory
rm -f matepair.o fastqlib.o utilityfunc.o nxtrim version.h
rm -rf test/output_dir/
rm -f test/*bam test/*pe.fastq.gz test/*mp.fastq.gz test/*unknown.fastq.gz
make[1]: Leaving directory '/build/reproducible-path/nxtrim-0.4.3+dfsg'
   dh_clean
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
   dh_auto_configure
   dh_auto_build
	make -j22 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/nxtrim-0.4.3+dfsg'
make[1]: git: No such file or directory
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/nxtrim-0.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o matepair.o matepair.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/nxtrim-0.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fastqlib.o fastqlib.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/nxtrim-0.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o utilityfunc.o utilityfunc.cpp
echo '#define VERSION "v0.4.3"' > version.h
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/nxtrim-0.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security nxtrim.cpp matepair.o fastqlib.o utilityfunc.o -lz -o nxtrim -Wl,-z,relro -Wl,-z,now
make[1]: Leaving directory '/build/reproducible-path/nxtrim-0.4.3+dfsg'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/nxtrim-0.4.3+dfsg'
cp -a example example.bak
dh_auto_test
	make -j22 test
make[2]: Entering directory '/build/reproducible-path/nxtrim-0.4.3+dfsg'
make[2]: git: No such file or directory
bash -e example/run_test.sh
Output: example/ENA.*.fastq.gz
Trimming:
R1:	example/ENA_R1.fastq.gz
R2:	example/ENA_R2.fastq.gz

Trimming summary:
1 / 1	( 100.00% )	reads passed chastity/purity filters.
0 / 1	( 0.00% )	reads had multiple copies of adapter (filtered).
0 / 1	( 0.00% )	read pairs were ignored because template length appeared less than read length
1 remaining reads were trimmed

0 / 1	( 0.00% )	read pairs had MP orientation
1 / 1	( 100.00% )	read pairs had PE orientation
0 / 1	( 0.00% )	read pairs had unknown orientation
0 / 1	( 0.00% )	were single end reads

0 / 1	( 0.00% )	extra single end reads were generated from overhangs
Output: example/example11.*.fastq.gz
Trimming:
R1:	example/example11_R1.fastq.gz
R2:	example/example11_R2.fastq.gz
WARNING: reads with differing lengths. Has this data already been processed with nxtrim?

Trimming summary:
1 / 1	( 100.00% )	reads passed chastity/purity filters.
0 / 1	( 0.00% )	reads had multiple copies of adapter (filtered).
0 / 1	( 0.00% )	read pairs were ignored because template length appeared less than read length
1 remaining reads were trimmed

0 / 1	( 0.00% )	read pairs had MP orientation
0 / 1	( 0.00% )	read pairs had PE orientation
1 / 1	( 100.00% )	read pairs had unknown orientation
0 / 1	( 0.00% )	were single end reads

0 / 1	( 0.00% )	extra single end reads were generated from overhangs
Output: example/EXTERNAL.*.fastq.gz
Trimming:
R1:	example/EXTERNAL_R1.fastq.gz
R2:	example/EXTERNAL_R2.fastq.gz

Trimming summary:
1 / 1	( 100.00% )	reads passed chastity/purity filters.
0 / 1	( 0.00% )	reads had multiple copies of adapter (filtered).
0 / 1	( 0.00% )	read pairs were ignored because template length appeared less than read length
1 remaining reads were trimmed

0 / 1	( 0.00% )	read pairs had MP orientation
1 / 1	( 100.00% )	read pairs had PE orientation
0 / 1	( 0.00% )	read pairs had unknown orientation
0 / 1	( 0.00% )	were single end reads

0 / 1	( 0.00% )	extra single end reads were generated from overhangs
Output: example/FailPF.*.fastq.gz
Trimming:
R1:	example/FailPF_R1.fastq.gz
R2:	example/FailPF_R2.fastq.gz

Trimming summary:
0 / 1	( 0.00% )	reads passed chastity/purity filters.
0 / 0	( -nan% )	reads had multiple copies of adapter (filtered).
0 / 0	( -nan% )	read pairs were ignored because template length appeared less than read length
0 remaining reads were trimmed

0 / 0	( -nan% )	read pairs had MP orientation
0 / 0	( -nan% )	read pairs had PE orientation
0 / 0	( -nan% )	read pairs had unknown orientation
0 / 0	( -nan% )	were single end reads

0 / 0	( -nan% )	extra single end reads were generated from overhangs
Output: example/MP.*.fastq.gz
Trimming:
R1:	example/MP_R1.fastq.gz
R2:	example/MP_R2.fastq.gz

Trimming summary:
54 / 54	( 100.00% )	reads passed chastity/purity filters.
0 / 54	( 0.00% )	reads had multiple copies of adapter (filtered).
0 / 54	( 0.00% )	read pairs were ignored because template length appeared less than read length
54 remaining reads were trimmed

54 / 54	( 100.00% )	read pairs had MP orientation
0 / 54	( 0.00% )	read pairs had PE orientation
0 / 54	( 0.00% )	read pairs had unknown orientation
0 / 54	( 0.00% )	were single end reads

0 / 54	( 0.00% )	extra single end reads were generated from overhangs
Output: example/PE.*.fastq.gz
Trimming:
R1:	example/PE_R1.fastq.gz
R2:	example/PE_R2.fastq.gz

Trimming summary:
55 / 55	( 100.00% )	reads passed chastity/purity filters.
0 / 55	( 0.00% )	reads had multiple copies of adapter (filtered).
1 / 55	( 1.82% )	read pairs were ignored because template length appeared less than read length
54 remaining reads were trimmed

0 / 54	( 0.00% )	read pairs had MP orientation
54 / 54	( 100.00% )	read pairs had PE orientation
0 / 54	( 0.00% )	read pairs had unknown orientation
0 / 54	( 0.00% )	were single end reads

0 / 54	( 0.00% )	extra single end reads were generated from overhangs
Output: example/sample.*.fastq.gz
Trimming:
R1:	example/sample_R1.fastq.gz
R2:	example/sample_R2.fastq.gz

Trimming summary:
163 / 163	( 100.00% )	reads passed chastity/purity filters.
0 / 163	( 0.00% )	reads had multiple copies of adapter (filtered).
1 / 163	( 0.61% )	read pairs were ignored because template length appeared less than read length
162 remaining reads were trimmed

54 / 162	( 33.33% )	read pairs had MP orientation
54 / 162	( 33.33% )	read pairs had PE orientation
54 / 162	( 33.33% )	read pairs had unknown orientation
0 / 162	( 0.00% )	were single end reads

0 / 162	( 0.00% )	extra single end reads were generated from overhangs
Output: example/UNKNOWN.*.fastq.gz
Trimming:
R1:	example/UNKNOWN_R1.fastq.gz
R2:	example/UNKNOWN_R2.fastq.gz

Trimming summary:
54 / 54	( 100.00% )	reads passed chastity/purity filters.
0 / 54	( 0.00% )	reads had multiple copies of adapter (filtered).
0 / 54	( 0.00% )	read pairs were ignored because template length appeared less than read length
54 remaining reads were trimmed

0 / 54	( 0.00% )	read pairs had MP orientation
0 / 54	( 0.00% )	read pairs had PE orientation
54 / 54	( 100.00% )	read pairs had unknown orientation
0 / 54	( 0.00% )	were single end reads

0 / 54	( 0.00% )	extra single end reads were generated from overhangs
make[2]: Leaving directory '/build/reproducible-path/nxtrim-0.4.3+dfsg'
rm -rf example
mv example.bak example
make[1]: Leaving directory '/build/reproducible-path/nxtrim-0.4.3+dfsg'
   create-stamp debian/debhelper-build-stamp
   dh_prep
   dh_auto_install --destdir=debian/nxtrim/
   dh_install
   dh_installdocs
   dh_installchangelogs
   dh_installman
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   dh_missing
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
   dh_installdeb
   dh_gencontrol
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'nxtrim' in '../nxtrim_0.4.3+dfsg-4_i386.deb'.
dpkg-deb: building package 'nxtrim-dbgsym' in '../nxtrim-dbgsym_0.4.3+dfsg-4_i386.deb'.
 dpkg-genbuildinfo --build=binary -O../nxtrim_0.4.3+dfsg-4_i386.buildinfo
 dpkg-genchanges --build=binary -O../nxtrim_0.4.3+dfsg-4_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/37023 and its subdirectories
I: Current time: Mon Jan 26 00:31:41 -12 2026
I: pbuilder-time-stamp: 1769430701
Tue Dec 24 06:08:43 UTC 2024  I: 1st build successful. Starting 2nd build on remote node ionos12-i386.debian.net.
Tue Dec 24 06:08:43 UTC 2024  I: Preparing to do remote build '2' on ionos12-i386.debian.net.
Tue Dec 24 06:09:42 UTC 2024  I: Deleting $TMPDIR on ionos12-i386.debian.net.
Tue Dec 24 06:09:43 UTC 2024  I: nxtrim_0.4.3+dfsg-4_i386.changes:
Format: 1.8
Date: Fri, 20 Dec 2024 22:12:03 +0100
Source: nxtrim
Binary: nxtrim nxtrim-dbgsym
Architecture: i386
Version: 0.4.3+dfsg-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 nxtrim     - Optimized trimming of Illumina mate pair reads
Closes: 1045354
Changes:
 nxtrim (0.4.3+dfsg-4) unstable; urgency=medium
 .
   * Team upload
   * Cleanup after running build time test
     Closes: #1045354
   * Standards-Version: 4.7.0 (routine-update)
Checksums-Sha1:
 5c6a2ec05c6c87ebf3353e9465ef303e95d388f9 314544 nxtrim-dbgsym_0.4.3+dfsg-4_i386.deb
 99693576c49c8b867cd7e7cda01acceb10574af1 5015 nxtrim_0.4.3+dfsg-4_i386.buildinfo
 8612c03db68ec6a2efbfb58f26efe5805cdebaac 39940 nxtrim_0.4.3+dfsg-4_i386.deb
Checksums-Sha256:
 b4a19ad8b9b98ac38039da9accdca048452e651272cdd7619b1488976b38a44e 314544 nxtrim-dbgsym_0.4.3+dfsg-4_i386.deb
 71cf6a1907f93a619d73d0e8b7c79ad6fd89c759af43a6b6a28dd33be2595d3e 5015 nxtrim_0.4.3+dfsg-4_i386.buildinfo
 50635d2c18be22e053f6e63f4d5e606d95a34df4f89da2d6bd5388912828df60 39940 nxtrim_0.4.3+dfsg-4_i386.deb
Files:
 aa1490e0147d0605f7fd452639af8c7c 314544 debug optional nxtrim-dbgsym_0.4.3+dfsg-4_i386.deb
 45847063c081d70bf9027c4298714d91 5015 science optional nxtrim_0.4.3+dfsg-4_i386.buildinfo
 5efab835f66e74ab9aa82db8084c07c7 39940 science optional nxtrim_0.4.3+dfsg-4_i386.deb
Tue Dec 24 06:09:44 UTC 2024  I: diffoscope 284 will be used to compare the two builds:
Running as unit: rb-diffoscope-i386_11-40260.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.lGkrZ053/nxtrim_0.4.3+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.lGkrZ053/nxtrim_0.4.3+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.lGkrZ053/nxtrim_0.4.3+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.lGkrZ053/b1/nxtrim_0.4.3+dfsg-4_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.lGkrZ053/b2/nxtrim_0.4.3+dfsg-4_i386.changes

## command (total time: 0.000s)
       0.000s      1 call     cmp (internal)

## has_same_content_as (total time: 0.000s)
       0.000s      1 call     abc.DotChangesFile

## main (total time: 0.338s)
       0.338s      2 calls    outputs
       0.000s      1 call     cleanup

## recognizes (total time: 0.017s)
       0.017s     12 calls    diffoscope.comparators.binary.FilesystemFile

## specialize (total time: 0.000s)
       0.000s      1 call     specialize
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 641ms
CPU time consumed: 641ms
Tue Dec 24 06:09:45 UTC 2024  I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists.
Tue Dec 24 06:09:45 UTC 2024  I: nxtrim from trixie built successfully and reproducibly on i386.
Tue Dec 24 06:09:46 UTC 2024  I: Submitting .buildinfo files to external archives:
Tue Dec 24 06:09:46 UTC 2024  I: Submitting 8.0K	b1/nxtrim_0.4.3+dfsg-4_i386.buildinfo.asc
Tue Dec 24 06:09:46 UTC 2024  I: Submitting 8.0K	b2/nxtrim_0.4.3+dfsg-4_i386.buildinfo.asc
Tue Dec 24 06:09:47 UTC 2024  I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Tue Dec 24 06:09:47 UTC 2024  I: Done submitting .buildinfo files.
Tue Dec 24 06:09:47 UTC 2024  I: Removing signed nxtrim_0.4.3+dfsg-4_i386.buildinfo.asc files:
removed './b1/nxtrim_0.4.3+dfsg-4_i386.buildinfo.asc'
removed './b2/nxtrim_0.4.3+dfsg-4_i386.buildinfo.asc'