Tue Dec 3 05:59:54 UTC 2024 I: starting to build milib/trixie/i386 on jenkins on '2024-12-03 05:59' Tue Dec 3 05:59:54 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_10/34279/console.log Tue Dec 3 05:59:54 UTC 2024 I: Downloading source for trixie/milib=2.2.0+dfsg-1 --2024-12-03 05:59:55-- http://deb.debian.org/debian/pool/main/m/milib/milib_2.2.0%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2321 (2.3K) [text/prs.lines.tag] Saving to: ‘milib_2.2.0+dfsg-1.dsc’ 0K .. 100% 331M=0s 2024-12-03 05:59:55 (331 MB/s) - ‘milib_2.2.0+dfsg-1.dsc’ saved [2321/2321] Tue Dec 3 05:59:55 UTC 2024 I: milib_2.2.0+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: milib Binary: libmilib-java Architecture: all Version: 2.2.0+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Pierre Gruet Homepage: https://milaboratory.com/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/milib Vcs-Git: https://salsa.debian.org/med-team/milib.git Build-Depends: debhelper-compat (= 13), default-jdk, gradle-debian-helper, javahelper, maven-repo-helper Build-Depends-Indep: junit4 , libcommons-compress-java, libcommons-io-java, libcommons-math3-java, libguava-java, libjackson2-annotations-java, libjackson2-core-java, libjackson2-databind-java, libjcommander-java, liblz4-java, libmockito-java , libredberry-pipe-java, libtrove3-java Package-List: libmilib-java deb java optional arch=all Checksums-Sha1: 8bdc2c9f5b41fb8f019e40aa92319f8f44cf53b0 297272 milib_2.2.0+dfsg.orig.tar.xz 8679f47ef3b51a7903c90aec7b1cc0f03d5519ba 7164 milib_2.2.0+dfsg-1.debian.tar.xz Checksums-Sha256: fcb526a82893ed03e0e2ee03fc903068ab0e1ba3756882fde5772570d925bea8 297272 milib_2.2.0+dfsg.orig.tar.xz 3580819348a335020267872364231b07d94acc187fe8f8d1e725cd435ca99da0 7164 milib_2.2.0+dfsg-1.debian.tar.xz Files: 0f3366106ffc38854a4ecb1291948b37 297272 milib_2.2.0+dfsg.orig.tar.xz 1ccdc6feb357479034ab0802e1ec790f 7164 milib_2.2.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEM8soQxPpC9J9y0UjYAMWptwndHYFAmOu8MEACgkQYAMWptwn dHb8exAAgNgcLCIp51bVmOXq+5+TMCGtZH0+gUjZYfnhqvzgRcVtjsY4KyVRaxvv 43ldjF+xJOnapBdgG9Yk/JwyooGIk3L7x2d2fSflxqfvCqjRqCWC7EZ43FDESdWx +Xb48U+1t5rW6ucA+GIGuaI3/wL8UTxm9O/ZCdk0zdFoUFeNHOEMPw8/Fysy7z6U gCg2TbPTfrgsnGbTCv9pHqT7/FE8cMNLbd5P61acd/Afa1qym01RxcUlMcGqOS4R 4gf49LshEB1ftRu4XjE9ka6S9svWWxPFK3Qq6qM8otWcsn91BJEsRx7qo0iY/cw6 JoALJr/kq/3QXIiP4a2A6WuP5l53xrNyLZ8E5B95JZnDw887seHibv0BMvKIAxEG GGvsIhd3qWMHSfu5IQckXkg+Vl6spdb82shQpkUOUy7+Nshnplw5Vn5KQ2Ll39j/ sNZpLsb1IMaagRQVp57cFgFCPyHgbTnuHMMhUZJ7n6W7Gqb3bkFDjdKtJnrcSB7i Dltz0RpNUNRmCzfzKNRWORRMQ1CD2cUD8CZK7yqdoSv5S6cGGsMIHuAT2pY4vA6N FE/usfcq76Eghl8xO6XLFLIJxrVSM8iBXQ4TTmA+oUf+ESZ0yb09OwwuEh60MWLM 8CiI7eUUWryGLXgJtjZZkcEFj9qxSblrje70pr9KGmDoWFQQ2R8= =eoDq -----END PGP SIGNATURE----- Tue Dec 3 05:59:55 UTC 2024 I: Checking whether the package is not for us Tue Dec 3 05:59:55 UTC 2024 I: Starting 1st build on remote node ionos16-i386.debian.net. Tue Dec 3 05:59:55 UTC 2024 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Tue Dec 3 06:03:59 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jan 5 00:22:56 -12 2026 I: pbuilder-time-stamp: 1767615776 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [milib_2.2.0+dfsg-1.dsc] I: copying [./milib_2.2.0+dfsg.orig.tar.xz] I: copying [./milib_2.2.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Dec 30 14:08:01 2022 gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./milib_2.2.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting milib in milib-2.2.0+dfsg dpkg-source: info: unpacking milib_2.2.0+dfsg.orig.tar.xz dpkg-source: info: unpacking milib_2.2.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build_gradle.patch dpkg-source: info: applying guava_interface.patch dpkg-source: info: applying deactivate_test_reading_build_properties.patch dpkg-source: info: applying flaky_test.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/114724/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='f3b6ec96e9004b6ea071e709d468c0a7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='114724' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.lym8Atvq/pbuilderrc_1ZZa --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.lym8Atvq/b1 --logfile b1/build.log milib_2.2.0+dfsg-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos16-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/114724/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), default-jdk, gradle-debian-helper, javahelper, maven-repo-helper, junit4, libcommons-compress-java, libcommons-io-java, libcommons-math3-java, libguava-java, libjackson2-annotations-java, libjackson2-core-java, libjackson2-databind-java, libjcommander-java, liblz4-java, libmockito-java, libredberry-pipe-java, libtrove3-java dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19950 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on gradle-debian-helper; however: Package gradle-debian-helper is not installed. pbuilder-satisfydepends-dummy depends on javahelper; however: Package javahelper is not installed. pbuilder-satisfydepends-dummy depends on maven-repo-helper; however: Package maven-repo-helper is not installed. pbuilder-satisfydepends-dummy depends on junit4; however: Package junit4 is not installed. pbuilder-satisfydepends-dummy depends on libcommons-compress-java; however: Package libcommons-compress-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-io-java; however: Package libcommons-io-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-math3-java; however: Package libcommons-math3-java is not installed. pbuilder-satisfydepends-dummy depends on libguava-java; however: Package libguava-java is not installed. pbuilder-satisfydepends-dummy depends on libjackson2-annotations-java; however: Package libjackson2-annotations-java is not installed. pbuilder-satisfydepends-dummy depends on libjackson2-core-java; however: Package libjackson2-core-java is not installed. pbuilder-satisfydepends-dummy depends on libjackson2-databind-java; however: Package libjackson2-databind-java is not installed. pbuilder-satisfydepends-dummy depends on libjcommander-java; however: Package libjcommander-java is not installed. pbuilder-satisfydepends-dummy depends on liblz4-java; however: Package liblz4-java is not installed. pbuilder-satisfydepends-dummy depends on libmockito-java; however: Package libmockito-java is not installed. pbuilder-satisfydepends-dummy depends on libredberry-pipe-java; however: Package libredberry-pipe-java is not installed. pbuilder-satisfydepends-dummy depends on libtrove3-java; however: Package libtrove3-java is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} ant{a} ant-optional{a} antlr{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} binfmt-support{a} bnd{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} dctrl-tools{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} fastjar{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gpg{a} gpg-agent{a} gpgconf{a} gpgsm{a} gradle{a} gradle-debian-helper{a} groff-base{a} groovy{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} ivy{a} jarwrapper{a} java-common{a} java-wrappers{a} javahelper{a} junit4{a} libantlr-java{a} libaopalliance-java{a} libapache-pom-java{a} libapparmor1{a} libarchive-zip-perl{a} libasm-java{a} libasound2-data{a} libasound2t64{a} libassuan9{a} libatinject-jsr330-api-java{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libb-hooks-op-check-perl{a} libbcel-java{a} libbcpg-java{a} libbcprov-java{a} libbrotli1{a} libbsf-java{a} libbsh-java{a} libbyte-buddy-java{a} libcairo-gobject2{a} libcairo2{a} libcdi-api-java{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libcommons-cli-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-compress-java{a} libcommons-io-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-math3-java{a} libcommons-parent-java{a} libcups2t64{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdd-plist-java{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdom4j-java{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libeclipse-jdt-annotation-java{a} libedit2{a} libel-api-java{a} libelf1t64{a} libencode-locale-perl{a} libepoxy0{a} liberror-prone-java{a} libexpat1{a} libfelix-framework-java{a} libfelix-gogo-runtime-java{a} libfelix-resolver-java{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libfindbugs-java{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgeronimo-annotation-1.3-spec-java{a} libgeronimo-interceptor-3.0-spec-java{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgoogle-gson-java{a} libgradle-core-java{a} libgradle-plugins-java{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0t64{a} libgtk-3-common{a} libguava-java{a} libguice-java{a} libhamcrest-java{a} libharfbuzz0b{a} libhawtjni-runtime-java{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libhttpclient-java{a} libhttpcore-java{a} libicu72{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libjackson2-annotations-java{a} libjackson2-core-java{a} libjackson2-databind-java{a} libjansi-java{a} libjansi-native-java{a} libjansi1-java{a} libjarjar-java{a} libjatl-java{a} libjavaewah-java{a} libjaxen-java{a} libjbig0{a} libjcifs-java{a} libjcip-annotations-java{a} libjcommander-java{a} libjetty9-java{a} libjformatstring-java{a} libjgit-java{a} libjline2-java{a} libjna-java{a} libjna-jni{a} libjpeg62-turbo{a} libjs-jquery{a} libjsch-java{a} libjsoup-java{a} libjsp-api-java{a} libjsr305-java{a} libjunixsocket-java{a} libjunixsocket-jni{a} libjzlib-java{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libkryo-java{a} libksba8{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} liblightcouch-java{a} libllvm19{a} liblog4j2-java{a} liblogback-java{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} liblz4-java{a} liblz4-jni{a} libmagic-mgc{a} libmagic1t64{a} libmaven-parent-java{a} libmaven-resolver-1.6-java{a} libmaven-resolver-java{a} libmaven-shared-utils-java{a} libmaven3-core-java{a} libminlog-java{a} libmockito-java{a} libmodule-runtime-perl{a} libmongodb-java{a} libmoo-perl{a} libnative-platform-java{a} libnative-platform-jni{a} libnekohtml-java{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnpth0t64{a} libnsl2{a} libnspr4{a} libnss3{a} libobjenesis-java{a} libosgi-annotation-java{a} libosgi-compendium-java{a} libosgi-core-java{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparams-classify-perl{a} libpciaccess0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libplexus-cipher-java{a} libplexus-classworlds-java{a} libplexus-component-annotations-java{a} libplexus-container-default-java{a} libplexus-interpolation-java{a} libplexus-sec-dispatcher-java{a} libplexus-utils2-java{a} libpng16-16t64{a} libpolyglot-maven-java{a} libproc2-0{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libqdox-java{a} libreadline8t64{a} libredberry-pipe-java{a} libreflectasm-java{a} librhino-java{a} librole-tiny-perl{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libservlet-api-java{a} libsharpyuv0{a} libsimple-http-java{a} libsisu-inject-java{a} libsisu-plexus-java{a} libslf4j-java{a} libsub-quote-perl{a} libsystemd-shared{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libtrove3-java{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvulkan1{a} libwagon-file-java{a} libwagon-http-java{a} libwagon-provider-api-java{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp7{a} libwebsocket-api-java{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxbean-reflect-java{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxpp3-java{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxstream-java{a} libxtst6{a} libxxf86vm1{a} libxz-java{a} libyaml-snake-java{a} libz3-4{a} m4{a} man-db{a} maven-repo-helper{a} media-types{a} mesa-libgallium{a} netbase{a} openjdk-21-jdk{a} openjdk-21-jdk-headless{a} openjdk-21-jre{a} openjdk-21-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} shared-mime-info{a} systemd{a} systemd-sysv{a} testng{a} tzdata{a} unzip{a} wdiff{a} x11-common{a} xkb-data{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf at-spi2-core chrony curl debian-keyring dput dput-ng dupload equivs fonts-dejavu-extra gnupg-utils gpg-wks-client javascript-common krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libbindex-java libdata-dump-perl libdistro-info-perl libgdk-pixbuf2.0-bin libgit-wrapper-perl libgitlab-api-v4-perl libglib2.0-data libgpars-groovy-java libgtk-3-bin libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libjson-perl libkmod2 libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl libnss-systemd libreflectasm-java-doc librsvg2-common libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libxstring-perl libxt-dev licensecheck lintian linux-sysctl-defaults lynx mesa-vulkan-drivers ntpsec openntpd pristine-tar psmisc python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg strace systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs 0 packages upgraded, 382 newly installed, 0 to remove and 0 not upgraded. Need to get 350 MB of archives. After unpacking 935 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libapparmor1 i386 3.1.7-1+b3 [43.3 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libsystemd-shared i386 257~rc3-1 [2201 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 systemd i386 257~rc3-1 [3612 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 systemd-sysv i386 257~rc3-1 [59.5 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 libdbus-1-3 i386 1.14.10-6 [217 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 dbus-bin i386 1.14.10-6 [107 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 dbus-session-bus-common all 1.14.10-6 [79.2 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 dbus-daemon i386 1.14.10-6 [195 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 dbus-system-bus-common all 1.14.10-6 [80.2 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 dbus i386 1.14.10-6 [101 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 binfmt-support i386 2.2.2-7 [65.8 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.7-3 [814 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.7-3 [2236 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.12.6-1 [26.7 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 tzdata all 2024b-3 [255 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.1-1+b1 [23.4 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 24 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libtirpc3t64 i386 1.3.4+ds-1.3+b1 [90.5 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libnsl2 i386 1.3.0-3+b3 [42.7 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-5 [69.3 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-5 [173 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.7-3 [1964 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.7-3 [671 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.12.6-1 [9692 B] Get: 34 http://deb.debian.org/debian trixie/main i386 python3 i386 3.12.6-1 [27.8 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libproc2-0 i386 2:4.0.4-6 [65.7 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 procps i386 2:4.0.4-6 [876 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 openssl i386 3.3.2-2 [1387 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20240203 [158 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libpam-systemd i386 257~rc3-1 [305 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-11 [95.6 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 libgdk-pixbuf2.0-common all 2.42.12+dfsg-1 [311 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libglib2.0-0t64 i386 2.82.2-3 [1571 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5+b1 [9583 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 shared-mime-info i386 2.4-5+b1 [761 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo i386 1:2.1.5-3+b1 [171 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libpng16-16t64 i386 1.6.44-2 [288 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.22-1 [48.1 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libjbig0 i386 2.1-6.1+b2 [32.2 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 liblerc4 i386 4.0.0+ds-5 [191 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libsharpyuv0 i386 1.4.0-0.1+b1 [113 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libwebp7 i386 1.4.0-0.1+b1 [322 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libtiff6 i386 4.5.1+git230720-5 [339 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libgdk-pixbuf-2.0-0 i386 2.42.12+dfsg-1+b1 [149 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 gtk-update-icon-cache i386 4.16.7+ds-1 [50.7 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 hicolor-icon-theme all 0.18-1 [12.0 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 adwaita-icon-theme all 47.0-2 [463 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 ca-certificates-java all 20240118 [11.6 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 java-common all 0.76 [6776 B] Get: 68 http://deb.debian.org/debian trixie/main i386 liblcms2-2 i386 2.16-2 [171 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libnspr4 i386 2:4.36-1 [119 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libnss3 i386 2:3.106-1 [1504 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 libpcsclite1 i386 2.3.0-3 [57.1 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 openjdk-21-jre-headless i386 21.0.5+11-1 [43.2 MB] Get: 73 http://deb.debian.org/debian trixie/main i386 default-jre-headless i386 2:1.21-76 [3192 B] Get: 74 http://deb.debian.org/debian trixie/main i386 ant all 1.10.15-1 [2163 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 ant-optional all 1.10.15-1 [456 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 libantlr-java all 2.7.7+dfsg-14 [458 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 antlr all 2.7.7+dfsg-14 [8376 B] Get: 78 http://deb.debian.org/debian trixie/main i386 at-spi2-common all 2.54.0-1 [170 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 unzip i386 6.0-28 [166 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 java-wrappers all 0.5 [8848 B] Get: 86 http://deb.debian.org/debian trixie/main i386 libhamcrest-java all 2.2-2 [121 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 junit4 all 4.13.2-5 [350 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 libfelix-framework-java all 4.6.1-2.1 [569 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 libfelix-gogo-runtime-java all 0.16.2-1.1 [114 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 libosgi-annotation-java all 8.1.0-1 [9436 B] Get: 91 http://deb.debian.org/debian trixie/main i386 libosgi-core-java all 8.0.0-2 [182 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 libfelix-resolver-java all 1.16.0-1 [180 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 libhawtjni-runtime-java all 1.18-1 [36.3 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 libjansi-native-java all 1.8-2 [26.0 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 libjansi1-java all 1.18-3 [66.5 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 libjline2-java all 2.14.6-5 [151 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 libosgi-compendium-java all 7.0.0-1 [477 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 libslf4j-java all 1.7.32-1 [144 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 libxz-java all 1.9-1 [143 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 libyaml-snake-java all 1.33-2 [321 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 bnd all 5.0.1-5 [10.1 MB] Get: 102 http://deb.debian.org/debian trixie/main i386 dbus-user-session i386 1.14.10-6 [79.0 kB] Get: 103 http://deb.debian.org/debian trixie/main i386 libdconf1 i386 0.40.0-4+b3 [43.8 kB] Get: 104 http://deb.debian.org/debian trixie/main i386 dconf-service i386 0.40.0-4+b3 [35.0 kB] Get: 105 http://deb.debian.org/debian trixie/main i386 dconf-gsettings-backend i386 0.40.0-4+b3 [30.6 kB] Get: 106 http://deb.debian.org/debian trixie/main i386 dctrl-tools i386 2.24-3 [105 kB] Get: 107 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 108 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-8 [517 kB] Get: 109 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 110 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 111 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 112 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 113 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 114 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 115 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 116 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 117 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 118 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 119 http://deb.debian.org/debian trixie/main i386 libatk1.0-0t64 i386 2.54.0-1 [51.0 kB] Get: 120 http://deb.debian.org/debian trixie/main i386 libxau6 i386 1:1.0.11-1 [20.7 kB] Get: 121 http://deb.debian.org/debian trixie/main i386 libxdmcp6 i386 1:1.1.5-1 [28.2 kB] Get: 122 http://deb.debian.org/debian trixie/main i386 libxcb1 i386 1.17.0-2+b1 [148 kB] Get: 123 http://deb.debian.org/debian trixie/main i386 libx11-data all 2:1.8.10-2 [337 kB] Get: 124 http://deb.debian.org/debian trixie/main i386 libx11-6 i386 2:1.8.10-2 [834 kB] Get: 125 http://deb.debian.org/debian trixie/main i386 libxext6 i386 2:1.3.4-1+b2 [52.6 kB] Get: 126 http://deb.debian.org/debian trixie/main i386 libxi6 i386 2:1.8.2-1 [81.2 kB] Get: 127 http://deb.debian.org/debian trixie/main i386 libatspi2.0-0t64 i386 2.54.0-1 [79.8 kB] Get: 128 http://deb.debian.org/debian trixie/main i386 libatk-bridge2.0-0t64 i386 2.54.0-1 [72.5 kB] Get: 129 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB] Get: 130 http://deb.debian.org/debian trixie/main i386 libfreetype6 i386 2.13.3+dfsg-1 [464 kB] Get: 131 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 132 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-core all 2.37-8 [840 kB] Get: 133 http://deb.debian.org/debian trixie/main i386 fontconfig-config i386 2.15.0-1.1+b1 [318 kB] Get: 134 http://deb.debian.org/debian trixie/main i386 libfontconfig1 i386 2.15.0-1.1+b1 [402 kB] Get: 135 http://deb.debian.org/debian trixie/main i386 libpixman-1-0 i386 0.44.0-3 [246 kB] Get: 136 http://deb.debian.org/debian trixie/main i386 libxcb-render0 i386 1.17.0-2+b1 [116 kB] Get: 137 http://deb.debian.org/debian trixie/main i386 libxcb-shm0 i386 1.17.0-2+b1 [105 kB] Get: 138 http://deb.debian.org/debian trixie/main i386 libxrender1 i386 1:0.9.10-1.1+b2 [28.9 kB] Get: 139 http://deb.debian.org/debian trixie/main i386 libcairo2 i386 1.18.2-2 [591 kB] Get: 140 http://deb.debian.org/debian trixie/main i386 libcairo-gobject2 i386 1.18.2-2 [129 kB] Get: 141 http://deb.debian.org/debian trixie/main i386 libcloudproviders0 i386 0.3.6-1+b1 [30.7 kB] Get: 142 http://deb.debian.org/debian trixie/main i386 libcolord2 i386 1.4.7-1+b2 [146 kB] Get: 143 http://deb.debian.org/debian trixie/main i386 libavahi-common-data i386 0.8-13+b3 [112 kB] Get: 144 http://deb.debian.org/debian trixie/main i386 libavahi-common3 i386 0.8-13+b3 [45.2 kB] Get: 145 http://deb.debian.org/debian trixie/main i386 libavahi-client3 i386 0.8-13+b3 [49.6 kB] Get: 146 http://deb.debian.org/debian trixie/main i386 libcups2t64 i386 2.4.10-2 [267 kB] Get: 147 http://deb.debian.org/debian trixie/main i386 libepoxy0 i386 1.5.10-2 [196 kB] Get: 148 http://deb.debian.org/debian trixie/main i386 libfribidi0 i386 1.0.15-1 [72.4 kB] Get: 149 http://deb.debian.org/debian trixie/main i386 libgraphite2-3 i386 1.3.14-2+b1 [77.8 kB] Get: 150 http://deb.debian.org/debian trixie/main i386 libharfbuzz0b i386 10.0.1-1 [503 kB] Get: 151 http://deb.debian.org/debian trixie/main i386 fontconfig i386 2.15.0-1.1+b1 [463 kB] Get: 152 http://deb.debian.org/debian trixie/main i386 libthai-data all 0.1.29-2 [168 kB] Get: 153 http://deb.debian.org/debian trixie/main i386 libdatrie1 i386 0.2.13-3+b1 [39.9 kB] Get: 154 http://deb.debian.org/debian trixie/main i386 libthai0 i386 0.1.29-2+b1 [50.3 kB] Get: 155 http://deb.debian.org/debian trixie/main i386 libpango-1.0-0 i386 1.54.0+ds-3 [230 kB] Get: 156 http://deb.debian.org/debian trixie/main i386 libpangoft2-1.0-0 i386 1.54.0+ds-3 [58.1 kB] Get: 157 http://deb.debian.org/debian trixie/main i386 libpangocairo-1.0-0 i386 1.54.0+ds-3 [36.1 kB] Get: 158 http://deb.debian.org/debian trixie/main i386 libwayland-client0 i386 1.23.0-1+b1 [27.2 kB] Get: 159 http://deb.debian.org/debian trixie/main i386 libwayland-cursor0 i386 1.23.0-1+b1 [12.4 kB] Get: 160 http://deb.debian.org/debian trixie/main i386 libwayland-egl1 i386 1.23.0-1+b1 [5752 B] Get: 161 http://deb.debian.org/debian trixie/main i386 libxcomposite1 i386 1:0.4.6-1 [16.6 kB] Get: 162 http://deb.debian.org/debian trixie/main i386 libxfixes3 i386 1:6.0.0-2+b2 [20.7 kB] Get: 163 http://deb.debian.org/debian trixie/main i386 libxcursor1 i386 1:1.2.2-1+b1 [38.9 kB] Get: 164 http://deb.debian.org/debian trixie/main i386 libxdamage1 i386 1:1.1.6-1+b2 [15.6 kB] Get: 165 http://deb.debian.org/debian trixie/main i386 libxinerama1 i386 2:1.1.4-3+b2 [16.3 kB] Get: 166 http://deb.debian.org/debian trixie/main i386 xkb-data all 2.42-1 [790 kB] Get: 167 http://deb.debian.org/debian trixie/main i386 libxkbcommon0 i386 1.6.0-1+b2 [116 kB] Get: 168 http://deb.debian.org/debian trixie/main i386 libxrandr2 i386 2:1.5.4-1+b1 [37.9 kB] Get: 169 http://deb.debian.org/debian trixie/main i386 libgtk-3-common all 3.24.43-4 [4657 kB] Get: 170 http://deb.debian.org/debian trixie/main i386 libgtk-3-0t64 i386 3.24.43-4 [2920 kB] Get: 171 http://deb.debian.org/debian trixie/main i386 libglvnd0 i386 1.7.0-1+b2 [44.1 kB] Get: 172 http://deb.debian.org/debian trixie/main i386 libdrm-common all 2.4.123-1 [8084 B] Get: 173 http://deb.debian.org/debian trixie/main i386 libdrm2 i386 2.4.123-1 [41.8 kB] Get: 174 http://deb.debian.org/debian trixie/main i386 libglapi-mesa i386 24.2.8-1 [37.8 kB] Get: 175 http://deb.debian.org/debian trixie/main i386 libx11-xcb1 i386 2:1.8.10-2 [241 kB] Get: 176 http://deb.debian.org/debian trixie/main i386 libxcb-dri2-0 i386 1.17.0-2+b1 [107 kB] Get: 177 http://deb.debian.org/debian trixie/main i386 libxcb-dri3-0 i386 1.17.0-2+b1 [107 kB] Get: 178 http://deb.debian.org/debian trixie/main i386 libxcb-glx0 i386 1.17.0-2+b1 [124 kB] Get: 179 http://deb.debian.org/debian trixie/main i386 libxcb-present0 i386 1.17.0-2+b1 [106 kB] Get: 180 http://deb.debian.org/debian trixie/main i386 libxcb-randr0 i386 1.17.0-2+b1 [118 kB] Get: 181 http://deb.debian.org/debian trixie/main i386 libxcb-sync1 i386 1.17.0-2+b1 [109 kB] Get: 182 http://deb.debian.org/debian trixie/main i386 libxcb-xfixes0 i386 1.17.0-2+b1 [110 kB] Get: 183 http://deb.debian.org/debian trixie/main i386 libxshmfence1 i386 1.3-1+b2 [8992 B] Get: 184 http://deb.debian.org/debian trixie/main i386 libxxf86vm1 i386 1:1.1.4-1+b3 [20.1 kB] Get: 185 http://deb.debian.org/debian trixie/main i386 libdrm-amdgpu1 i386 2.4.123-1 [25.0 kB] Get: 186 http://deb.debian.org/debian trixie/main i386 libpciaccess0 i386 0.17-3+b2 [53.8 kB] Get: 187 http://deb.debian.org/debian trixie/main i386 libdrm-intel1 i386 2.4.123-1 [66.8 kB] Get: 188 http://deb.debian.org/debian trixie/main i386 libdrm-radeon1 i386 2.4.123-1 [23.0 kB] Get: 189 http://deb.debian.org/debian trixie/main i386 libedit2 i386 3.1-20240808-1 [98.0 kB] Get: 190 http://deb.debian.org/debian trixie/main i386 libz3-4 i386 4.13.3-1 [9211 kB] Get: 191 http://deb.debian.org/debian trixie/main i386 libllvm19 i386 1:19.1.4-1 [30.4 MB] Get: 192 http://deb.debian.org/debian trixie/main i386 libsensors-config all 1:3.6.0-10 [14.6 kB] Get: 193 http://deb.debian.org/debian trixie/main i386 libsensors5 i386 1:3.6.0-10+b1 [35.8 kB] Get: 194 http://deb.debian.org/debian trixie/main i386 mesa-libgallium i386 24.2.8-1 [9409 kB] Get: 195 http://deb.debian.org/debian trixie/main i386 libvulkan1 i386 1.3.296.0-1 [136 kB] Get: 196 http://deb.debian.org/debian trixie/main i386 libwayland-server0 i386 1.23.0-1+b1 [35.9 kB] Get: 197 http://deb.debian.org/debian trixie/main i386 libgbm1 i386 24.2.8-1 [43.9 kB] Get: 198 http://deb.debian.org/debian trixie/main i386 libgl1-mesa-dri i386 24.2.8-1 [42.5 kB] Get: 199 http://deb.debian.org/debian trixie/main i386 libglx-mesa0 i386 24.2.8-1 [160 kB] Get: 200 http://deb.debian.org/debian trixie/main i386 libglx0 i386 1.7.0-1+b2 [36.8 kB] Get: 201 http://deb.debian.org/debian trixie/main i386 libgl1 i386 1.7.0-1+b2 [82.7 kB] Get: 202 http://deb.debian.org/debian trixie/main i386 libasound2-data all 1.2.12-1 [21.0 kB] Get: 203 http://deb.debian.org/debian trixie/main i386 libasound2t64 i386 1.2.12-1+b1 [397 kB] Get: 204 http://deb.debian.org/debian trixie/main i386 libgif7 i386 5.2.2-1+b1 [45.6 kB] Get: 205 http://deb.debian.org/debian trixie/main i386 x11-common all 1:7.7+23.1 [216 kB] Get: 206 http://deb.debian.org/debian trixie/main i386 libxtst6 i386 2:1.2.3-1.1+b2 [26.5 kB] Get: 207 http://deb.debian.org/debian trixie/main i386 openjdk-21-jre i386 21.0.5+11-1 [203 kB] Get: 208 http://deb.debian.org/debian trixie/main i386 default-jre i386 2:1.21-76 [1068 B] Get: 209 http://deb.debian.org/debian trixie/main i386 openjdk-21-jdk-headless i386 21.0.5+11-1 [85.4 MB] Get: 210 http://deb.debian.org/debian trixie/main i386 default-jdk-headless i386 2:1.21-76 [1124 B] Get: 211 http://deb.debian.org/debian trixie/main i386 openjdk-21-jdk i386 21.0.5+11-1 [4309 kB] Get: 212 http://deb.debian.org/debian trixie/main i386 default-jdk i386 2:1.21-76 [1076 B] Get: 213 http://deb.debian.org/debian trixie/main i386 libassuan9 i386 3.0.1-2 [62.4 kB] Get: 214 http://deb.debian.org/debian trixie/main i386 gpgconf i386 2.2.45-2 [127 kB] Get: 215 http://deb.debian.org/debian trixie/main i386 libksba8 i386 1.6.7-2+b1 [142 kB] Get: 216 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 217 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 218 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3+b1 [200 kB] Get: 219 http://deb.debian.org/debian trixie/main i386 libnpth0t64 i386 1.6-3.1+b1 [18.3 kB] Get: 220 http://deb.debian.org/debian trixie/main i386 dirmngr i386 2.2.45-2 [396 kB] Get: 221 http://deb.debian.org/debian trixie/main i386 gnupg-l10n all 2.2.45-2 [705 kB] Get: 222 http://deb.debian.org/debian trixie/main i386 gpg i386 2.2.45-2 [573 kB] Get: 223 http://deb.debian.org/debian trixie/main i386 pinentry-curses i386 1.2.1-4+b1 [80.4 kB] Get: 224 http://deb.debian.org/debian trixie/main i386 gpg-agent i386 2.2.45-2 [269 kB] Get: 225 http://deb.debian.org/debian trixie/main i386 gpgsm i386 2.2.45-2 [275 kB] Get: 226 http://deb.debian.org/debian trixie/main i386 gnupg all 2.2.45-2 [376 kB] Get: 227 http://deb.debian.org/debian trixie/main i386 libfile-dirlist-perl all 0.05-3 [7600 B] Get: 228 http://deb.debian.org/debian trixie/main i386 libfile-which-perl all 1.27-2 [15.1 kB] Get: 229 http://deb.debian.org/debian trixie/main i386 libfile-homedir-perl all 1.006-2 [42.4 kB] Get: 230 http://deb.debian.org/debian trixie/main i386 libfile-touch-perl all 0.12-2 [8816 B] Get: 231 http://deb.debian.org/debian trixie/main i386 libio-pty-perl i386 1:1.20-1+b2 [35.8 kB] Get: 232 http://deb.debian.org/debian trixie/main i386 libipc-run-perl all 20231003.0-2 [101 kB] Get: 233 http://deb.debian.org/debian trixie/main i386 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get: 234 http://deb.debian.org/debian trixie/main i386 libclass-xsaccessor-perl i386 1.19-4+b4 [37.5 kB] Get: 235 http://deb.debian.org/debian trixie/main i386 libb-hooks-op-check-perl i386 0.22-3+b2 [10.7 kB] Get: 236 http://deb.debian.org/debian trixie/main i386 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 237 http://deb.debian.org/debian trixie/main i386 libdevel-callchecker-perl i386 0.009-1+b1 [16.2 kB] Get: 238 http://deb.debian.org/debian trixie/main i386 libparams-classify-perl i386 0.015-2+b4 [23.1 kB] Get: 239 http://deb.debian.org/debian trixie/main i386 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 240 http://deb.debian.org/debian trixie/main i386 libimport-into-perl all 1.002005-2 [11.3 kB] Get: 241 http://deb.debian.org/debian trixie/main i386 librole-tiny-perl all 2.002004-1 [21.4 kB] Get: 242 http://deb.debian.org/debian trixie/main i386 libsub-quote-perl all 2.006008-1 [21.8 kB] Get: 243 http://deb.debian.org/debian trixie/main i386 libmoo-perl all 2.005005-1 [58.0 kB] Get: 244 http://deb.debian.org/debian trixie/main i386 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 245 http://deb.debian.org/debian trixie/main i386 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 246 http://deb.debian.org/debian trixie/main i386 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 247 http://deb.debian.org/debian trixie/main i386 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 248 http://deb.debian.org/debian trixie/main i386 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 249 http://deb.debian.org/debian trixie/main i386 liburi-perl all 5.30-1 [105 kB] Get: 250 http://deb.debian.org/debian trixie/main i386 libhtml-parser-perl i386 3.83-1+b1 [101 kB] Get: 251 http://deb.debian.org/debian trixie/main i386 libhtml-tree-perl all 5.07-3 [211 kB] Get: 252 http://deb.debian.org/debian trixie/main i386 libclone-perl i386 0.47-1+b1 [14.0 kB] Get: 253 http://deb.debian.org/debian trixie/main i386 libio-html-perl all 1.004-3 [16.2 kB] Get: 254 http://deb.debian.org/debian trixie/main i386 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 255 http://deb.debian.org/debian trixie/main i386 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 256 http://deb.debian.org/debian trixie/main i386 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 257 http://deb.debian.org/debian trixie/main i386 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 258 http://deb.debian.org/debian trixie/main i386 perl-openssl-defaults i386 7+b2 [6720 B] Get: 259 http://deb.debian.org/debian trixie/main i386 libnet-ssleay-perl i386 1.94-2 [340 kB] Get: 260 http://deb.debian.org/debian trixie/main i386 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 261 http://deb.debian.org/debian trixie/main i386 libnet-http-perl all 6.23-1 [23.9 kB] Get: 262 http://deb.debian.org/debian trixie/main i386 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 263 http://deb.debian.org/debian trixie/main i386 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 264 http://deb.debian.org/debian trixie/main i386 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 265 http://deb.debian.org/debian trixie/main i386 libwww-perl all 6.77-1 [183 kB] Get: 266 http://deb.debian.org/debian trixie/main i386 patchutils i386 0.4.2-1 [79.6 kB] Get: 267 http://deb.debian.org/debian trixie/main i386 wdiff i386 1.2.2-6 [120 kB] Get: 268 http://deb.debian.org/debian trixie/main i386 devscripts all 2.24.5 [1080 kB] Get: 269 http://deb.debian.org/debian trixie/main i386 fastjar i386 2:0.98-7 [47.3 kB] Get: 270 http://deb.debian.org/debian trixie/main i386 ivy all 2.5.2-1 [1295 kB] Get: 271 http://deb.debian.org/debian trixie/main i386 libasm-java all 9.7.1-1 [391 kB] Get: 272 http://deb.debian.org/debian trixie/main i386 libbsf-java all 1:2.4.0-8 [76.3 kB] Get: 273 http://deb.debian.org/debian trixie/main i386 libcommons-cli-java all 1.6.0-1 [60.4 kB] Get: 274 http://deb.debian.org/debian trixie/main i386 libapache-pom-java all 33-2 [5852 B] Get: 275 http://deb.debian.org/debian trixie/main i386 libcommons-parent-java all 56-1 [10.8 kB] Get: 276 http://deb.debian.org/debian trixie/main i386 libcommons-logging-java all 1.3.0-1 [68.6 kB] Get: 277 http://deb.debian.org/debian trixie/main i386 libjansi-java all 2.4.1-2 [100 kB] Get: 278 http://deb.debian.org/debian trixie/main i386 libjsp-api-java all 2.3.4-3 [53.7 kB] Get: 279 http://deb.debian.org/debian trixie/main i386 libqdox-java all 1.12.1-4 [173 kB] Get: 280 http://deb.debian.org/debian trixie/main i386 libservlet-api-java all 4.0.1-2 [81.0 kB] Get: 281 http://deb.debian.org/debian trixie/main i386 libxpp3-java all 1.1.4c-3 [292 kB] Get: 282 http://deb.debian.org/debian trixie/main i386 libxstream-java all 1.4.21-1 [567 kB] Get: 283 http://deb.debian.org/debian trixie/main i386 groovy all 2.4.21-10 [12.8 MB] Get: 284 http://deb.debian.org/debian trixie/main i386 libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get: 285 http://deb.debian.org/debian trixie/main i386 libcommons-collections3-java all 3.2.2-3 [530 kB] Get: 286 http://deb.debian.org/debian trixie/main i386 libcommons-codec-java all 1.17.1-1 [303 kB] Get: 287 http://deb.debian.org/debian trixie/main i386 libcommons-io-java all 2.17.0-1 [488 kB] Get: 288 http://deb.debian.org/debian trixie/main i386 libcommons-compress-java all 1.27.1-2 [641 kB] Get: 289 http://deb.debian.org/debian trixie/main i386 libcommons-lang-java all 2.6-10 [273 kB] Get: 290 http://deb.debian.org/debian trixie/main i386 liberror-prone-java all 2.18.0-1 [22.5 kB] Get: 291 http://deb.debian.org/debian trixie/main i386 libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get: 292 http://deb.debian.org/debian trixie/main i386 libguava-java all 32.0.1-1 [2708 kB] Get: 293 http://deb.debian.org/debian trixie/main i386 libhttpcore-java all 4.4.16-1 [636 kB] Get: 294 http://deb.debian.org/debian trixie/main i386 libhttpclient-java all 4.5.14-1 [1247 kB] Get: 295 http://deb.debian.org/debian trixie/main i386 libjarjar-java all 1.4+svn142-12 [205 kB] Get: 296 http://deb.debian.org/debian trixie/main i386 libjcip-annotations-java all 20060626-6 [11.8 kB] Get: 297 http://deb.debian.org/debian trixie/main i386 libjna-jni i386 5.15.0-1 [64.6 kB] Get: 298 http://deb.debian.org/debian trixie/main i386 libjna-java all 5.15.0-1 [238 kB] Get: 299 http://deb.debian.org/debian trixie/main i386 libbcprov-java all 1.77-1 [5300 kB] Get: 300 http://deb.debian.org/debian trixie/main i386 libjunixsocket-jni i386 2.6.1-1 [20.4 kB] Get: 301 http://deb.debian.org/debian trixie/main i386 libeclipse-jdt-annotation-java all 2.2.700+eclipse4.29-2 [25.5 kB] Get: 302 http://deb.debian.org/debian trixie/main i386 libjunixsocket-java all 2.6.1-1 [264 kB] Get: 303 http://deb.debian.org/debian trixie/main i386 libgoogle-gson-java all 2.10.1-1 [262 kB] Get: 304 http://deb.debian.org/debian trixie/main i386 liblightcouch-java all 0.2.0-1 [75.0 kB] Get: 305 http://deb.debian.org/debian trixie/main i386 libmongodb-java all 3.6.3-2 [1901 kB] Get: 306 http://deb.debian.org/debian trixie/main i386 liblog4j2-java all 2.19.0-2 [2310 kB] Get: 307 http://deb.debian.org/debian trixie/main i386 libjzlib-java all 1.1.3-3 [79.4 kB] Get: 308 http://deb.debian.org/debian trixie/main i386 libjsch-java all 0.2.19-1 [513 kB] Get: 309 http://deb.debian.org/debian trixie/main i386 libminlog-java all 1.3.1-1 [7808 B] Get: 310 http://deb.debian.org/debian trixie/main i386 libobjenesis-java all 3.3-3 [41.3 kB] Get: 311 http://deb.debian.org/debian trixie/main i386 libreflectasm-java all 1.11.9+dfsg-4 [25.0 kB] Get: 312 http://deb.debian.org/debian trixie/main i386 libkryo-java all 2.20-7 [158 kB] Get: 313 http://deb.debian.org/debian trixie/main i386 liblogback-java all 1:1.2.11-6 [701 kB] Get: 314 http://deb.debian.org/debian trixie/main i386 libnative-platform-jni i386 0.14-6 [12.2 kB] Get: 315 http://deb.debian.org/debian trixie/main i386 libnative-platform-java all 0.14-6 [69.8 kB] Get: 316 http://deb.debian.org/debian trixie/main i386 libxml-commons-external-java all 1.4.01-6 [240 kB] Get: 317 http://deb.debian.org/debian trixie/main i386 libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get: 318 http://deb.debian.org/debian trixie/main i386 libxerces2-java all 2.12.2-1 [1440 kB] Get: 319 http://deb.debian.org/debian trixie/main i386 libnekohtml-java all 1.9.22.noko2-0.1 [125 kB] Get: 320 http://deb.debian.org/debian trixie/main i386 libxbean-reflect-java all 4.5-9 [132 kB] Get: 321 http://deb.debian.org/debian trixie/main i386 libgradle-core-java all 4.4.1-20 [4293 kB] Get: 322 http://deb.debian.org/debian trixie/main i386 libbcpg-java all 1.77-1 [428 kB] Get: 323 http://deb.debian.org/debian trixie/main i386 libbsh-java all 2.0b4-20 [291 kB] Get: 324 http://deb.debian.org/debian trixie/main i386 libdd-plist-java all 1.20-1.1 [72.6 kB] Get: 325 http://deb.debian.org/debian trixie/main i386 libjaxen-java all 1.1.6-5 [214 kB] Get: 326 http://deb.debian.org/debian trixie/main i386 libdom4j-java all 2.1.4-1 [312 kB] Get: 327 http://deb.debian.org/debian trixie/main i386 libcommons-lang3-java all 3.17.0-1 [641 kB] Get: 328 http://deb.debian.org/debian trixie/main i386 libbcel-java all 6.10.0-1 [674 kB] Get: 329 http://deb.debian.org/debian trixie/main i386 libjformatstring-java all 0.10~20131207-2.1 [34.5 kB] Get: 330 http://deb.debian.org/debian trixie/main i386 libfindbugs-java all 3.1.0~preview2-4 [3535 kB] Get: 331 http://deb.debian.org/debian trixie/main i386 libaopalliance-java all 20070526-7 [8572 B] Get: 332 http://deb.debian.org/debian trixie/main i386 libguice-java all 4.2.3-2 [1435 kB] Get: 333 http://deb.debian.org/debian trixie/main i386 libjatl-java all 0.2.3-1.1 [29.0 kB] Get: 334 http://deb.debian.org/debian trixie/main i386 libjcifs-java all 1.3.19-2 [394 kB] Get: 335 http://deb.debian.org/debian trixie/main i386 libjavaewah-java all 1.2.3-1 [159 kB] Get: 336 http://deb.debian.org/debian trixie/main i386 libel-api-java all 3.0.0-3 [64.9 kB] Get: 337 http://deb.debian.org/debian trixie/main i386 libwebsocket-api-java all 1.1-2 [40.1 kB] Get: 338 http://deb.debian.org/debian trixie/main i386 libjetty9-java all 9.4.56-1 [2964 kB] Get: 339 http://deb.debian.org/debian trixie/main i386 libjgit-java all 6.7.0-2 [3152 kB] Get: 340 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 341 http://deb.debian.org/debian trixie/main i386 libplexus-utils2-java all 3.4.2-1 [258 kB] Get: 342 http://deb.debian.org/debian trixie/main i386 libwagon-provider-api-java all 3.5.3-1 [48.2 kB] Get: 343 http://deb.debian.org/debian trixie/main i386 libmaven-resolver-java all 1.6.3-1 [548 kB] Get: 344 http://deb.debian.org/debian trixie/main i386 libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.1 kB] Get: 345 http://deb.debian.org/debian trixie/main i386 libmaven-parent-java all 43-2 [6252 B] Get: 346 http://deb.debian.org/debian trixie/main i386 libmaven-resolver-1.6-java all 1.6.3-2.1 [558 kB] Get: 347 http://deb.debian.org/debian trixie/main i386 libmaven-shared-utils-java all 3.4.2-1 [137 kB] Get: 348 http://deb.debian.org/debian trixie/main i386 libplexus-cipher-java all 2.0-1 [14.9 kB] Get: 349 http://deb.debian.org/debian trixie/main i386 libplexus-classworlds-java all 2.7.0-1 [50.6 kB] Get: 350 http://deb.debian.org/debian trixie/main i386 libplexus-component-annotations-java all 2.1.1-1 [7660 B] Get: 351 http://deb.debian.org/debian trixie/main i386 libplexus-interpolation-java all 1.27-1 [76.8 kB] Get: 352 http://deb.debian.org/debian trixie/main i386 libplexus-sec-dispatcher-java all 2.0-3 [28.3 kB] Get: 353 http://deb.debian.org/debian trixie/main i386 libgeronimo-interceptor-3.0-spec-java all 1.0.1-4 [8484 B] Get: 354 http://deb.debian.org/debian trixie/main i386 libcdi-api-java all 1.2-4 [55.3 kB] Get: 355 http://deb.debian.org/debian trixie/main i386 libsisu-inject-java all 0.3.4-2 [347 kB] Get: 356 http://deb.debian.org/debian trixie/main i386 libsisu-plexus-java all 0.3.4-3 [181 kB] Get: 357 http://deb.debian.org/debian trixie/main i386 libmaven3-core-java all 3.8.8-2 [1579 kB] Get: 358 http://deb.debian.org/debian trixie/main i386 libplexus-container-default-java all 2.1.1-1 [193 kB] Get: 359 http://deb.debian.org/debian trixie/main i386 libpolyglot-maven-java all 0.8~tobrien+git20120905-10 [74.9 kB] Get: 360 http://deb.debian.org/debian trixie/main i386 librhino-java all 1.7.14-2.1 [1357 kB] Get: 361 http://deb.debian.org/debian trixie/main i386 libsimple-http-java all 4.1.21-1.1 [211 kB] Get: 362 http://deb.debian.org/debian trixie/main i386 libwagon-file-java all 3.5.3-1 [8388 B] Get: 363 http://deb.debian.org/debian trixie/main i386 libjsoup-java all 1.15.3-1 [431 kB] Get: 364 http://deb.debian.org/debian trixie/main i386 libwagon-http-java all 3.5.3-1 [49.5 kB] Get: 365 http://deb.debian.org/debian trixie/main i386 libjcommander-java all 1.71-4 [73.0 kB] Get: 366 http://deb.debian.org/debian trixie/main i386 testng all 6.9.12-4 [795 kB] Get: 367 http://deb.debian.org/debian trixie/main i386 libgradle-plugins-java all 4.4.1-20 [5206 kB] Get: 368 http://deb.debian.org/debian trixie/main i386 gradle all 4.4.1-20 [398 kB] Get: 369 http://deb.debian.org/debian trixie/main i386 maven-repo-helper all 1.11 [142 kB] Get: 370 http://deb.debian.org/debian trixie/main i386 gradle-debian-helper all 2.4 [24.5 kB] Get: 371 http://deb.debian.org/debian trixie/main i386 jarwrapper all 0.80 [9692 B] Get: 372 http://deb.debian.org/debian trixie/main i386 javahelper all 0.80 [80.4 kB] Get: 373 http://deb.debian.org/debian trixie/main i386 libbyte-buddy-java all 1.14.19-1 [4756 kB] Get: 374 http://deb.debian.org/debian trixie/main i386 libcommons-math3-java all 3.6.1-3 [2018 kB] Get: 375 http://deb.debian.org/debian trixie/main i386 libjackson2-annotations-java all 2.14.0-1 [68.8 kB] Get: 376 http://deb.debian.org/debian trixie/main i386 libjackson2-core-java all 2.14.1-1 [447 kB] Get: 377 http://deb.debian.org/debian trixie/main i386 libjackson2-databind-java all 2.14.0-1 [1584 kB] Get: 378 http://deb.debian.org/debian trixie/main i386 liblz4-jni i386 1.8.0-4 [10.4 kB] Get: 379 http://deb.debian.org/debian trixie/main i386 liblz4-java all 1.8.0-4 [116 kB] Get: 380 http://deb.debian.org/debian trixie/main i386 libmockito-java all 3.3.0-2 [510 kB] Get: 381 http://deb.debian.org/debian trixie/main i386 libredberry-pipe-java all 1.0.0~alpha0-3 [62.7 kB] Get: 382 http://deb.debian.org/debian trixie/main i386 libtrove3-java all 3.0.3-5 [2146 kB] Fetched 350 MB in 5s (74.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libapparmor1:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19950 files and directories currently installed.) Preparing to unpack .../libapparmor1_3.1.7-1+b3_i386.deb ... Unpacking libapparmor1:i386 (3.1.7-1+b3) ... Selecting previously unselected package libsystemd-shared:i386. Preparing to unpack .../libsystemd-shared_257~rc3-1_i386.deb ... Unpacking libsystemd-shared:i386 (257~rc3-1) ... Selecting previously unselected package systemd. Preparing to unpack .../systemd_257~rc3-1_i386.deb ... Unpacking systemd (257~rc3-1) ... Setting up libapparmor1:i386 (3.1.7-1+b3) ... Setting up libsystemd-shared:i386 (257~rc3-1) ... Setting up systemd (257~rc3-1) ... Created symlink '/etc/systemd/system/getty.target.wants/getty@tty1.service' -> '/usr/lib/systemd/system/getty@.service'. Created symlink '/etc/systemd/system/multi-user.target.wants/remote-fs.target' -> '/usr/lib/systemd/system/remote-fs.target'. Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-pstore.service' -> '/usr/lib/systemd/system/systemd-pstore.service'. Initializing machine ID from random generator. Creating group 'systemd-journal' with GID 999. Creating group 'systemd-network' with GID 998. Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998. /usr/lib/tmpfiles.d/legacy.conf:14: Duplicate line for path "/run/lock", ignoring. Selecting previously unselected package systemd-sysv. (Reading database ... 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Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:i386 (1.6.44-2) ... Setting up libxml-commons-resolver1.1-java (1.2-11) ... Setting up libkryo-java (2.20-7) ... Setting up libxz-java (1.9-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libjna-jni (5.15.0-1) ... Setting up autopoint (0.22.5-2) ... Setting up binfmt-support (2.2.2-7) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Created symlink '/etc/systemd/system/multi-user.target.wants/binfmt-support.service' -> '/usr/lib/systemd/system/binfmt-support.service'. Setting up libb-hooks-op-check-perl:i386 (0.22-3+b2) ... Setting up libjunixsocket-jni (2.6.1-1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libfelix-framework-java (4.6.1-2.1) ... Setting up libipc-run-perl (20231003.0-2) ... Setting up libpcsclite1:i386 (2.3.0-3) ... Setting up libsensors5:i386 (1:3.6.0-10+b1) ... Setting up libmongodb-java (3.6.3-2) ... Setting up libk5crypto3:i386 (1.21.3-3) ... Setting up libhamcrest-java (2.2-2) ... Setting up libglapi-mesa:i386 (24.2.8-1) ... Setting up libbsh-java (2.0b4-20) ... Setting up libjsp-api-java (2.3.4-3) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-8) ... Setting up libvulkan1:i386 (1.3.296.0-1) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:i386 (1.4.0-0.1+b1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libxcb-dri2-0:i386 (1.17.0-2+b1) ... Setting up libgif7:i386 (5.2.2-1+b1) ... Setting up libjarjar-java (1.4+svn142-12) ... Setting up libtrove3-java (3.0.3-5) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libxshmfence1:i386 (1.3-1+b2) ... Setting up libjsoup-java (1.15.3-1) ... Setting up at-spi2-common (2.54.0-1) ... Setting up libtiff6:i386 (4.5.1+git230720-5) ... Setting up libxcb-randr0:i386 (1.17.0-2+b1) ... Setting up dbus-session-bus-common (1.14.10-6) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up libassuan9:i386 (3.0.1-2) ... Setting up libxml-commons-external-java (1.4.01-6) ... Setting up procps (2:4.0.4-6) ... Setting up libjna-java (5.15.0-1) ... Setting up libxbean-reflect-java (4.5-9) ... Setting up libservlet-api-java (4.0.1-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libjackson2-core-java (2.14.1-1) ... Setting up libx11-6:i386 (2:1.8.10-2) ... Setting up libthai-data (0.1.29-2) ... Setting up netbase (6.4) ... Setting up libcommons-math3-java (3.6.1-3) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libnative-platform-jni (0.14-6) ... Setting up libclass-xsaccessor-perl (1.19-4+b4) ... Setting up libkrb5-3:i386 (1.21.3-3) ... Setting up liblz4-jni (1.8.0-4) ... Setting up libwayland-egl1:i386 (1.23.0-1+b1) ... Setting up libhttpcore-java (4.4.16-1) ... Setting up libbcpg-java (1.77-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libxerces2-java (2.12.2-1) ... Setting up libfile-dirlist-perl (0.05-3) ... Setting up dbus-system-bus-common (1.14.10-6) ... useradd: Warning: missing or non-executable shell '/usr/sbin/nologin' Setting up libfile-homedir-perl (1.006-2) ... Setting up libantlr-java (2.7.7+dfsg-14) ... Setting up libyaml-snake-java (1.33-2) ... Setting up openssl (3.3.2-2) ... Setting up libdrm-common (2.4.123-1) ... Setting up libcdi-api-java (1.2-4) ... Setting up libxcomposite1:i386 (1:0.4.6-1) ... Setting up readline-common (8.2-5) ... Setting up libhawtjni-runtime-java (1.18-1) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liburi-perl (5.30-1) ... Setting up dbus-bin (1.14.10-6) ... Setting up libfile-touch-perl (0.12-2) ... Setting up dctrl-tools (2.24-3) ... Setting up libjatl-java (0.2.3-1.1) ... Setting up libxkbcommon0:i386 (1.6.0-1+b2) ... Setting up libwayland-client0:i386 (1.23.0-1+b1) ... Setting up libnet-ssleay-perl:i386 (1.94-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up pinentry-curses (1.2.1-4+b1) ... Setting up libdom4j-java (2.1.4-1) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libxcb-dri3-0:i386 (1.17.0-2+b1) ... Setting up libwagon-provider-api-java (3.5.3-1) ... Setting up libnative-platform-java (0.14-6) ... Setting up libllvm19:i386 (1:19.1.4-1) ... Setting up libosgi-core-java (8.0.0-2) ... Setting up libx11-xcb1:i386 (2:1.8.10-2) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libxstream-java (1.4.21-1) ... Setting up libnekohtml-java (1.9.22.noko2-0.1) ... Setting up liblz4-java (1.8.0-4) ... Setting up gettext (0.22.5-2) ... Setting up libjetty9-java (9.4.56-1) ... Setting up libxdamage1:i386 (1:1.1.6-1+b2) ... Setting up java-wrappers (0.5) ... Setting up libatk1.0-0t64:i386 (2.54.0-1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libosgi-compendium-java (7.0.0-1) ... Setting up libxrender1:i386 (1:0.9.10-1.1+b2) ... Setting up jarwrapper (0.80) ... Setting up libtool (2.4.7-8) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libmaven-parent-java (43-2) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:i386 (0.8-13+b3) ... Setting up libcloudproviders0:i386 (0.3.6-1+b1) ... Setting up libcommons-logging-java (1.3.0-1) ... Setting up libxext6:i386 (2:1.3.4-1+b2) ... Setting up libnet-http-perl (6.23-1) ... Setting up libsisu-inject-java (0.3.4-2) ... Setting up libnss3:i386 (2:3.106-1) ... Setting up dbus-daemon (1.14.10-6) ... Setting up libdevel-callchecker-perl:i386 (0.009-1+b1) ... Setting up libcommons-lang-java (2.6-10) ... Setting up libjunixsocket-java (2.6.1-1) ... Setting up libldap-2.5-0:i386 (2.5.18+dfsg-3+b1) ... Setting up libcolord2:i386 (1.4.7-1+b2) ... Setting up libjackson2-databind-java (2.14.0-1) ... Setting up libplexus-cipher-java (2.0-1) ... Setting up libxxf86vm1:i386 (1:1.1.4-1+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libdconf1:i386 (0.40.0-4+b3) ... Setting up dh-autoreconf (20) ... Setting up patchutils (0.4.2-1) ... Setting up libthai0:i386 (0.1.29-2+b1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libsisu-plexus-java (0.3.4-3) ... Setting up libfreetype6:i386 (2.13.3+dfsg-1) ... Setting up libxfixes3:i386 (1:6.0.0-2+b2) ... Setting up testng (6.9.12-4) ... Setting up dbus (1.14.10-6) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up shared-mime-info (2.4-5+b1) ... Setting up libxinerama1:i386 (2:1.1.4-3+b2) ... Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libxrandr2:i386 (2:1.5.4-1+b1) ... Setting up libcommons-lang3-java (3.17.0-1) ... Setting up libreadline8t64:i386 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libfelix-resolver-java (1.16.0-1) ... Setting up libdrm2:i386 (2.4.123-1) ... Setting up libjansi-native-java (1.8-2) ... Setting up groff-base (1.23.0-5) ... Setting up libwayland-cursor0:i386 (1.23.0-1+b1) ... Setting up libhtml-parser-perl:i386 (3.83-1+b1) ... Setting up gpgconf (2.2.45-2) ... Setting up libpam-systemd:i386 (257~rc3-1) ... Setting up libjansi1-java (1.18-3) ... Setting up libplexus-sec-dispatcher-java (2.0-3) ... Setting up libharfbuzz0b:i386 (10.0.1-1) ... Setting up libgdk-pixbuf-2.0-0:i386 (2.42.12+dfsg-1+b1) ... Setting up libfontconfig1:i386 (2.15.0-1.1+b1) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libwagon-file-java (3.5.3-1) ... Setting up libcommons-codec-java (1.17.1-1) ... Setting up libjline2-java (2.14.6-5) ... Setting up libavahi-client3:i386 (0.8-13+b3) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up gpg (2.2.45-2) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libdrm-amdgpu1:i386 (2.4.123-1) ... Setting up gtk-update-icon-cache (4.16.7+ds-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up fontconfig (2.15.0-1.1+b1) ... Regenerating fonts cache... done. Setting up gpg-agent (2.2.45-2) ... Created symlink '/etc/systemd/user/sockets.target.wants/gpg-agent-browser.socket' -> '/usr/lib/systemd/user/gpg-agent-browser.socket'. Created symlink '/etc/systemd/user/sockets.target.wants/gpg-agent-extra.socket' -> '/usr/lib/systemd/user/gpg-agent-extra.socket'. Created symlink '/etc/systemd/user/sockets.target.wants/gpg-agent-ssh.socket' -> '/usr/lib/systemd/user/gpg-agent-ssh.socket'. Created symlink '/etc/systemd/user/sockets.target.wants/gpg-agent.socket' -> '/usr/lib/systemd/user/gpg-agent.socket'. Setting up openjdk-21-jre-headless:i386 (21.0.5+11-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libxi6:i386 (2:1.8.2-1) ... Setting up libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libcommons-io-java (2.17.0-1) ... Setting up libdrm-radeon1:i386 (2.4.123-1) ... Setting up libxtst6:i386 (2:1.2.3-1.1+b2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libxcursor1:i386 (1:1.2.2-1+b1) ... Setting up libparams-classify-perl:i386 (0.015-2+b4) ... Setting up gpgsm (2.2.45-2) ... Setting up libpango-1.0-0:i386 (1.54.0+ds-3) ... Setting up libdrm-intel1:i386 (2.4.123-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink '/etc/systemd/system/timers.target.wants/man-db.timer' -> '/usr/lib/systemd/system/man-db.timer'. Setting up libcairo2:i386 (1.18.2-2) ... Setting up libmaven-resolver-1.6-java (1.6.3-2.1) ... Setting up dirmngr (2.2.45-2) ... Created symlink '/etc/systemd/user/sockets.target.wants/dirmngr.socket' -> '/usr/lib/systemd/user/dirmngr.socket'. Setting up dbus-user-session (1.14.10-6) ... Setting up libmaven-resolver-java (1.6.3-1) ... Setting up libbcel-java (6.10.0-1) ... Setting up adwaita-icon-theme (47.0-2) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libmodule-runtime-perl (0.016-2) ... Setting up libatspi2.0-0t64:i386 (2.54.0-1) ... Setting up libhttpclient-java (4.5.14-1) ... Setting up libnsl2:i386 (1.3.0-3+b3) ... Setting up gnupg (2.2.45-2) ... Setting up liblightcouch-java (0.2.0-1) ... Setting up libwagon-http-java (3.5.3-1) ... Setting up libcairo-gobject2:i386 (1.18.2-2) ... Setting up libmaven-shared-utils-java (3.4.2-1) ... Setting up libpangoft2-1.0-0:i386 (1.54.0+ds-3) ... Setting up libcups2t64:i386 (2.4.10-2) ... Setting up libpangocairo-1.0-0:i386 (1.54.0+ds-3) ... Setting up libatk-bridge2.0-0t64:i386 (2.54.0-1) ... Setting up mesa-libgallium:i386 (24.2.8-1) ... Setting up libfindbugs-java (3.1.0~preview2-4) ... Setting up libpython3.12-stdlib:i386 (3.12.7-3) ... Setting up libcommons-compress-java (1.27.1-2) ... Setting up libgbm1:i386 (24.2.8-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblog4j2-java (2.19.0-2) ... Setting up python3.12 (3.12.7-3) ... Setting up libgl1-mesa-dri:i386 (24.2.8-1) ... Setting up debhelper (13.20) ... Setting up dconf-service (0.40.0-4+b3) ... Setting up libjsch-java (0.2.19-1) ... Setting up libpython3-stdlib:i386 (3.12.6-1) ... Setting up libjgit-java (6.7.0-2) ... Setting up libglx-mesa0:i386 (24.2.8-1) ... Setting up libglx0:i386 (1.7.0-1+b2) ... Setting up dconf-gsettings-backend:i386 (0.40.0-4+b3) ... Setting up python3 (3.12.6-1) ... Setting up libgl1:i386 (1.7.0-1+b2) ... Setting up libgtk-3-common (3.24.43-4) ... Setting up libgtk-3-0t64:i386 (3.24.43-4) ... Setting up liberror-prone-java (2.18.0-1) ... Setting up libwww-perl (6.77-1) ... Setting up devscripts (2.24.5) ... Setting up libguava-java (32.0.1-1) ... Setting up javahelper (0.80) ... Setting up libplexus-container-default-java (2.1.1-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libguice-java (4.2.3-2) ... Setting up libmaven3-core-java (3.8.8-2) ... Setting up libbyte-buddy-java (1.14.19-1) ... Setting up libmockito-java (3.3.0-2) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for systemd (257~rc3-1) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up antlr (2.7.7+dfsg-14) ... Setting up openjdk-21-jre:i386 (21.0.5+11-1) ... Setting up ivy (2.5.2-1) ... Setting up ant (1.10.15-1) ... Setting up junit4 (4.13.2-5) ... Setting up groovy (2.4.21-10) ... update-alternatives: using /usr/share/groovy/bin/groovy to provide /usr/bin/groovy (groovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovyc to provide /usr/bin/groovyc (groovyc) in auto mode update-alternatives: using /usr/share/groovy/bin/grape to provide /usr/bin/grape (grape) in auto mode update-alternatives: using /usr/share/groovy/bin/startGroovy to provide /usr/bin/startGroovy (startGroovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovysh to provide /usr/bin/groovysh (groovysh) in auto mode update-alternatives: using /usr/share/groovy/bin/java2groovy to provide /usr/bin/java2groovy (java2groovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovyConsole to provide /usr/bin/groovyConsole (groovyConsole) in auto mode update-alternatives: using /usr/share/groovy/bin/groovydoc to provide /usr/bin/groovydoc (groovydoc) in auto mode Setting up openjdk-21-jdk-headless:i386 (21.0.5+11-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jwebserver to provide /usr/bin/jwebserver (jwebserver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre-headless (2:1.21-76) ... Setting up maven-repo-helper (1.11) ... Setting up default-jre (2:1.21-76) ... Setting up ant-optional (1.10.15-1) ... Setting up openjdk-21-jdk:i386 (21.0.5+11-1) ... update-alternatives: using /usr/lib/jvm/java-21-openjdk-i386/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up bnd (5.0.1-5) ... Setting up default-jdk-headless (2:1.21-76) ... Setting up libgradle-core-java (4.4.1-20) ... Setting up libgradle-plugins-java (4.4.1-20) ... Setting up gradle (4.4.1-20) ... Setting up default-jdk (2:1.21-76) ... Setting up gradle-debian-helper (2.4) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/milib-2.2.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../milib_2.2.0+dfsg-1_source.changes dpkg-buildpackage: info: source package milib dpkg-buildpackage: info: source version 2.2.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with javahelper --with maven_repo_helper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/milib-2.2.0+dfsg' dh_auto_clean # Clearing the build.gradle file we provide rm build.gradle rm: cannot remove 'build.gradle': No such file or directory make[1]: [debian/rules:11: override_dh_auto_clean] Error 1 (ignored) make[1]: Leaving directory '/build/reproducible-path/milib-2.2.0+dfsg' jh_clean Duplicate specification "u=s" for option "u" dh_clean debian/rules binary dh binary --with javahelper --with maven_repo_helper dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/milib-2.2.0+dfsg' # Adding the upstream version number (without +dfsg) to the build.gradle file # we got by patching build.gradle.kts sed "s/\(^group.*\)/\1\nversion = '2.2.0+dfsg'/ ; s/\+dfsg[[:digit:]]*//" build.gradle.kts > build.gradle dh_auto_configure make[1]: Leaving directory '/build/reproducible-path/milib-2.2.0+dfsg' jh_linkjars dh_auto_build mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=milib -Dfile.encoding=UTF-8 --parallel --max-workers=22 jar openjdk version "21.0.5" 2024-10-15 OpenJDK Runtime Environment (build 21.0.5+11-Debian-1) OpenJDK Server VM (build 21.0.5+11-Debian-1, mixed mode, sharing) Initialized native services in: /build/reproducible-path/milib-2.2.0+dfsg/.gradle/native To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/milib-2.2.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-i386/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' An attempt to start the daemon took 0.789 secs. The client will now receive all logging from the daemon (pid: 123145). The daemon log file: /build/reproducible-path/milib-2.2.0+dfsg/.gradle/daemon/4.4.1/daemon-123145.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 22 worker leases. Creating new cache for fileHashes, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@ad85ca Creating new cache for resourceHashesCache, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@ad85ca Creating new cache for fileHashes, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@fd7234 Starting Build Compiling initialization script '/build/reproducible-path/milib-2.2.0+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. Creating new cache for metadata-1.1/results, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@5e97d8 Compiling initialization script '/build/reproducible-path/milib-2.2.0+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Settings evaluated using settings file '/build/reproducible-path/milib-2.2.0+dfsg/settings.gradle'. Settings file not found (/build/reproducible-path/milib-2.2.0+dfsg/settings.gradle) Root project name not defined in settings.gradle, defaulting to 'milib' instead of the name of the root directory 'milib-2.2.0+dfsg' Projects loaded. Root project using build file '/build/reproducible-path/milib-2.2.0+dfsg/build.gradle'. Included projects: [root project 'milib'] Keep-alive timer started Adding Debian repository to project 'milib' Parallel execution is an incubating feature. Evaluating root project 'milib' using build file '/build/reproducible-path/milib-2.2.0+dfsg/build.gradle'. Compiling build file '/build/reproducible-path/milib-2.2.0+dfsg/build.gradle' using SubsetScriptTransformer. Compiling build file '/build/reproducible-path/milib-2.2.0+dfsg/build.gradle' using BuildScriptTransformer. Adding Maven pom generation to project 'milib' Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : Creating new cache for annotation-processors, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@88094a Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] Creating new cache for resourceHashesCache, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@fd7234 Creating new cache for taskHistory, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@1f7be3c Creating new cache for outputFiles, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@140236 :compileJava (Thread[#57,Task worker for ':' Thread 2,5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.003 secs. Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@602182 Loading the Maven rules... Replacing org.apache.commons:commons-math3:jar:3.6.1 -> org.apache.commons:commons-math3:jar:debian Replacing cc.redberry:pipe:jar:1.3.0 -> cc.redberry:pipe:jar:1.0.0-alpha0 Replacing com.fasterxml.jackson:jackson-bom:jar:2.14.0 -> com.fasterxml.jackson:jackson-bom:jar:debian Passing through com.fasterxml.jackson:jackson-parent:jar:debian Passing through com.fasterxml:oss-parent:jar:debian Passing through com.fasterxml.jackson.core:jackson-databind:jar:2.x Passing through com.fasterxml.jackson:jackson-base:jar:debian Passing through com.fasterxml.jackson:jackson-bom:jar:debian Replacing org.apache.commons:commons-compress:jar:1.21 -> org.apache.commons:commons-compress:jar:debian Passing through org.apache.commons:commons-parent:jar:debian Passing through org.apache:apache:jar:debian Replacing commons-io:commons-io:jar:2.11.0 -> commons-io:commons-io:jar:debian Replacing org.lz4:lz4-java:jar:1.8.0 -> org.lz4:lz4-java:jar:debian Replacing com.beust:jcommander:jar:1.72 -> com.beust:jcommander:jar:debian Replacing net.sf.trove4j:trove4j:jar:3.0.3 -> net.sf.trove4j:trove4j:jar:debian Replacing com.google.guava:guava:jar:31.1-jre -> com.google.guava:guava:jar:debian Passing through com.google.guava:guava-parent:jar:debian Passing through com.fasterxml.jackson.core:jackson-annotations:jar:2.x Passing through com.fasterxml.jackson.core:jackson-core:jar:2.x Passing through commons-codec:commons-codec:jar:debian Passing through org.jsr-305:jsr305:jar:0.x Passing through com.google.errorprone:error_prone_annotations:jar:debian Passing through com.google.errorprone:error_prone_parent:jar:debian Malformed jar [jackson-databind-2.x.jar] found on classpath. Gradle 5.0 will no longer allow malformed jars on a classpath. at org.gradle.api.internal.changedetection.state.AbstractClasspathSnapshotBuilder$JarHasher.hashMalformedZip(AbstractClasspathSnapshotBuilder.java:120) at org.gradle.api.internal.changedetection.state.AbstractClasspathSnapshotBuilder$JarHasher.hashJarContents(AbstractClasspathSnapshotBuilder.java:115) at org.gradle.api.internal.changedetection.state.AbstractClasspathSnapshotBuilder$JarHasher.hash(AbstractClasspathSnapshotBuilder.java:93) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.AbstractClasspathSnapshotBuilder.visitJar(AbstractClasspathSnapshotBuilder.java:83) at org.gradle.api.internal.changedetection.state.AbstractClasspathSnapshotBuilder.visitFileSnapshot(AbstractClasspathSnapshotBuilder.java:76) at org.gradle.api.internal.changedetection.state.AbstractFileCollectionSnapshotter$FileCollectionVisitorImpl.visitCollection(AbstractFileCollectionSnapshotter.java:77) at org.gradle.api.internal.file.AbstractFileCollection.visitRootElements(AbstractFileCollection.java:234) at org.gradle.api.internal.file.CompositeFileCollection.visitRootElements(CompositeFileCollection.java:185) at org.gradle.api.internal.changedetection.state.AbstractFileCollectionSnapshotter.snapshot(AbstractFileCollectionSnapshotter.java:53) at org.gradle.api.internal.changedetection.state.DefaultCompileClasspathSnapshotter.snapshot(DefaultCompileClasspathSnapshotter.java:38) at org.gradle.api.internal.changedetection.state.CacheBackedTaskHistoryRepository.snapshotTaskFiles(CacheBackedTaskHistoryRepository.java:331) at org.gradle.api.internal.changedetection.state.CacheBackedTaskHistoryRepository.createExecution(CacheBackedTaskHistoryRepository.java:154) at org.gradle.api.internal.changedetection.state.CacheBackedTaskHistoryRepository.access$100(CacheBackedTaskHistoryRepository.java:61) at org.gradle.api.internal.changedetection.state.CacheBackedTaskHistoryRepository$1.getCurrentExecution(CacheBackedTaskHistoryRepository.java:114) at org.gradle.api.internal.changedetection.changes.DefaultTaskArtifactStateRepository$TaskArtifactStateImpl.getStates(DefaultTaskArtifactStateRepository.java:201) at org.gradle.api.internal.changedetection.changes.DefaultTaskArtifactStateRepository$TaskArtifactStateImpl.isUpToDate(DefaultTaskArtifactStateRepository.java:86) at org.gradle.api.internal.tasks.execution.SkipUpToDateTaskExecuter.execute(SkipUpToDateTaskExecuter.java:53) at org.gradle.api.internal.tasks.execution.ResolveTaskOutputCachingStateExecuter.execute(ResolveTaskOutputCachingStateExecuter.java:54) at org.gradle.api.internal.tasks.execution.ValidatingTaskExecuter.execute(ValidatingTaskExecuter.java:60) at org.gradle.api.internal.tasks.execution.SkipEmptySourceFilesTaskExecuter.execute(SkipEmptySourceFilesTaskExecuter.java:97) at org.gradle.api.internal.tasks.execution.CleanupStaleOutputsExecuter.execute(CleanupStaleOutputsExecuter.java:87) at org.gradle.api.internal.tasks.execution.ResolveTaskArtifactStateTaskExecuter.execute(ResolveTaskArtifactStateTaskExecuter.java:52) at org.gradle.api.internal.tasks.execution.SkipTaskWithNoActionsExecuter.execute(SkipTaskWithNoActionsExecuter.java:52) at org.gradle.api.internal.tasks.execution.SkipOnlyIfTaskExecuter.execute(SkipOnlyIfTaskExecuter.java:54) at org.gradle.api.internal.tasks.execution.ExecuteAtMostOnceTaskExecuter.execute(ExecuteAtMostOnceTaskExecuter.java:43) at org.gradle.api.internal.tasks.execution.CatchExceptionTaskExecuter.execute(CatchExceptionTaskExecuter.java:34) at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker$1.run(DefaultTaskGraphExecuter.java:248) at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336) at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328) at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199) at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110) at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:241) at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:230) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.processTask(DefaultTaskPlanExecutor.java:123) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.access$200(DefaultTaskPlanExecutor.java:79) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker$1.execute(DefaultTaskPlanExecutor.java:104) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker$1.execute(DefaultTaskPlanExecutor.java:98) at org.gradle.execution.taskgraph.DefaultTaskExecutionPlan.execute(DefaultTaskExecutionPlan.java:626) at org.gradle.execution.taskgraph.DefaultTaskExecutionPlan.executeWithTask(DefaultTaskExecutionPlan.java:581) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.run(DefaultTaskPlanExecutor.java:98) at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63) at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1144) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:642) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:1583) Up-to-date check for task ':compileJava' took 2.031 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. warning: [options] source value 8 is obsolete and will be removed in a future release warning: [options] target value 8 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. /build/reproducible-path/milib-2.2.0+dfsg/src/main/java/com/milaboratory/core/alignment/kaligner2/KMapper2.java:1279: warning: [removal] finalize() in Object has been deprecated and marked for removal protected void finalize() throws Throwable { ^ /build/reproducible-path/milib-2.2.0+dfsg/src/main/java/com/milaboratory/core/alignment/kaligner2/KMapper2.java:1280: warning: [removal] finalize() in Object has been deprecated and marked for removal super.finalize(); ^ /build/reproducible-path/milib-2.2.0+dfsg/src/main/java/com/milaboratory/core/alignment/blast/BlastDB.java:108: warning: [removal] finalize() in Object has been deprecated and marked for removal protected void finalize() throws Throwable { ^ /build/reproducible-path/milib-2.2.0+dfsg/src/main/java/com/milaboratory/core/alignment/blast/BlastDB.java:116: warning: [removal] finalize() in Object has been deprecated and marked for removal super.finalize(); ^ Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 7 warnings :compileJava (Thread[#57,Task worker for ':' Thread 2,5,main]) completed. Took 6.783 secs. :processResources (Thread[#57,Task worker for ':' Thread 2,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. Up-to-date check for task ':processResources' took 0.005 secs. It is not up-to-date because: No history is available. :processResources (Thread[#57,Task worker for ':' Thread 2,5,main]) completed. Took 0.027 secs. :classes (Thread[#57,Task worker for ':' Thread 2,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes (Thread[#57,Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. :debianMavenPom (Thread[#57,Task worker for ':' Thread 2,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. Up-to-date check for task ':debianMavenPom' took 0.0 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/milib-2.2.0+dfsg/build/debian/milib.pom :debianMavenPom (Thread[#57,Task worker for ':' Thread 2,5,main]) completed. Took 0.068 secs. :jar (Thread[#57,Task worker for ':' Thread 2,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. Up-to-date check for task ':jar' took 0.015 secs. It is not up-to-date because: No history is available. :jar (Thread[#57,Task worker for ':' Thread 2,5,main]) completed. Took 0.188 secs. BUILD SUCCESSFUL in 11s 4 actionable tasks: 4 executed dh_auto_test mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=milib -Dfile.encoding=UTF-8 --parallel --max-workers=22 test openjdk version "21.0.5" 2024-10-15 OpenJDK Runtime Environment (build 21.0.5+11-Debian-1) OpenJDK Server VM (build 21.0.5+11-Debian-1, mixed mode, sharing) Initialized native services in: /build/reproducible-path/milib-2.2.0+dfsg/.gradle/native To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/milib-2.2.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-i386/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' An attempt to start the daemon took 0.851 secs. The client will now receive all logging from the daemon (pid: 123358). The daemon log file: /build/reproducible-path/milib-2.2.0+dfsg/.gradle/daemon/4.4.1/daemon-123358.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 22 worker leases. Creating new cache for fileHashes, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1db7c11 Creating new cache for resourceHashesCache, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1db7c11 Creating new cache for fileHashes, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1b86439 Starting Build Creating new cache for metadata-1.1/results, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@3370e5 Settings evaluated using settings file '/build/reproducible-path/milib-2.2.0+dfsg/settings.gradle'. Settings file not found (/build/reproducible-path/milib-2.2.0+dfsg/settings.gradle) Root project name not defined in settings.gradle, defaulting to 'milib' instead of the name of the root directory 'milib-2.2.0+dfsg' Projects loaded. Root project using build file '/build/reproducible-path/milib-2.2.0+dfsg/build.gradle'. Included projects: [root project 'milib'] Keep-alive timer started Adding Debian repository to project 'milib' Parallel execution is an incubating feature. Evaluating root project 'milib' using build file '/build/reproducible-path/milib-2.2.0+dfsg/build.gradle'. Adding Maven pom generation to project 'milib' Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : Creating new cache for annotation-processors, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@b9deef Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] Creating new cache for resourceHashesCache, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1b86439 Creating new cache for taskHistory, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@151d1ca Creating new cache for outputFiles, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@14dbc33 :compileJava (Thread[#58,Task worker for ':' Thread 3,5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.003 secs. Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@a9fa5b Loading the Maven rules... Replacing org.apache.commons:commons-math3:jar:3.6.1 -> org.apache.commons:commons-math3:jar:debian Replacing cc.redberry:pipe:jar:1.3.0 -> cc.redberry:pipe:jar:1.0.0-alpha0 Replacing com.fasterxml.jackson:jackson-bom:jar:2.14.0 -> com.fasterxml.jackson:jackson-bom:jar:debian Passing through com.fasterxml.jackson:jackson-parent:jar:debian Passing through com.fasterxml:oss-parent:jar:debian Passing through com.fasterxml.jackson.core:jackson-databind:jar:2.x Passing through com.fasterxml.jackson:jackson-base:jar:debian Passing through com.fasterxml.jackson:jackson-bom:jar:debian Replacing org.apache.commons:commons-compress:jar:1.21 -> org.apache.commons:commons-compress:jar:debian Passing through org.apache.commons:commons-parent:jar:debian Passing through org.apache:apache:jar:debian Replacing commons-io:commons-io:jar:2.11.0 -> commons-io:commons-io:jar:debian Replacing org.lz4:lz4-java:jar:1.8.0 -> org.lz4:lz4-java:jar:debian Replacing com.beust:jcommander:jar:1.72 -> com.beust:jcommander:jar:debian Replacing net.sf.trove4j:trove4j:jar:3.0.3 -> net.sf.trove4j:trove4j:jar:debian Replacing com.google.guava:guava:jar:31.1-jre -> com.google.guava:guava:jar:debian Passing through com.google.guava:guava-parent:jar:debian Passing through com.fasterxml.jackson.core:jackson-annotations:jar:2.x Passing through com.fasterxml.jackson.core:jackson-core:jar:2.x Passing through commons-codec:commons-codec:jar:debian Passing through org.jsr-305:jsr305:jar:0.x Passing through com.google.errorprone:error_prone_annotations:jar:debian Passing through com.google.errorprone:error_prone_parent:jar:debian Skipping task ':compileJava' as it is up-to-date (took 0.537 secs). :compileJava UP-TO-DATE :compileJava (Thread[#58,Task worker for ':' Thread 3,5,main]) completed. Took 0.568 secs. :processResources (Thread[#58,Task worker for ':' Thread 3,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. Skipping task ':processResources' as it is up-to-date (took 0.004 secs). :processResources UP-TO-DATE :processResources (Thread[#58,Task worker for ':' Thread 3,5,main]) completed. Took 0.007 secs. :classes (Thread[#58,Task worker for ':' Thread 3,5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE :classes (Thread[#58,Task worker for ':' Thread 3,5,main]) completed. Took 0.0 secs. :compileTestJava (Thread[#58,Task worker for ':' Thread 3,5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. Replacing junit:junit:jar:4.13.2 -> junit:junit:jar:4.x Replacing org.mockito:mockito-all:jar:1.10.19 -> org.mockito:mockito-all:jar:debian org.mockito:mockito-all:debian is relocated to org.mockito:mockito-core:debian. Please update your dependencies. Passing through org.hamcrest:hamcrest:jar:debian Passing through org.mockito:mockito-core:jar:debian Passing through net.bytebuddy:byte-buddy:jar:debian Passing through net.bytebuddy:byte-buddy-parent:jar:debian Passing through net.bytebuddy:byte-buddy-agent:jar:debian Passing through org.objenesis:objenesis:jar:debian Passing through org.objenesis:objenesis-parent:jar:debian Passing through net.bytebuddy:byte-buddy-dep:jar:debian Passing through org.ow2.asm:asm:jar:debian Passing through org.ow2.asm:asm-commons:jar:debian Up-to-date check for task ':compileTestJava' took 1.417 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. Compiling with JDK Java compiler API. warning: [options] source value 8 is obsolete and will be removed in a future release warning: [options] target value 8 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 3 warnings :compileTestJava (Thread[#58,Task worker for ':' Thread 3,5,main]) completed. Took 4.617 secs. :processTestResources (Thread[#58,Task worker for ':' Thread 3,5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. Up-to-date check for task ':processTestResources' took 0.007 secs. It is not up-to-date because: No history is available. :processTestResources (Thread[#58,Task worker for ':' Thread 3,5,main]) completed. Took 0.029 secs. :testClasses (Thread[#58,Task worker for ':' Thread 3,5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. :testClasses (Thread[#58,Task worker for ':' Thread 3,5,main]) completed. Took 0.0 secs. :test (Thread[#58,Task worker for ':' Thread 3,5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. Up-to-date check for task ':test' took 0.646 secs. It is not up-to-date because: No history is available. Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/milib-2.2.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-i386/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath86193963267502284txt -Xms1024m -Xmx2048m -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. com.milaboratory.util.NSequenceWithQualityPrintHelperTest > test1 SKIPPED com.milaboratory.util.IntCombinationsTest > test1 STANDARD_OUT [0, 1] [0, 2] [1, 2] com.milaboratory.util.RemoveActionTest > test1 STANDARD_OUT /tmp/milib_ecfc04c189e9a236eb83836d4b5bc73609a89afd3093461952267744387 com.milaboratory.util.RemoveActionTest > test2 STANDARD_OUT /tmp/milib_8afabb1459c760f64c81a20c25ffa161159dd1b011949848697222186729.tmp com.milaboratory.util.VersionInfoTest > test3 SKIPPED com.milaboratory.util.JsonOverriderTest > test1 STANDARD_OUT WARNING: unnecessary override -Ob= with the same value. com.milaboratory.util.AtomicEnumHistogramTest > test1 STANDARD_OUT {"labels":["A","B","C","null"],"hist":[1,2,0,1]} com.milaboratory.util.CacheTest > test1 STANDARD_OUT Cache misses:400 Cache hits:800 com.milaboratory.util.ByteStringTest > testSpeed1 STANDARD_OUT Time per hash: 110ns Addition to hash set (per operation): 291ns Hash set removal (per operation): 210ns a com.milaboratory.util.sorting.HashSorterTest > testSingleton STANDARD_OUT /tmp/milib_20ccfb5f1d36a2641396754fa2b783e6180b544c4342258902458810248 timeInCollate: 3.36s timeInCollatorInit: 2.34s timeAwaitingO: 2.99ms timeAwaitingI: 504.9ms timeInFinalSorting1: 0ns timeInFinalSorting2: 11.85ms timeInFinalSorting3: 52.06ms /27S (5|27|32): objs=50000 size=2.9MiB com.milaboratory.util.sorting.HashSorterTest > test1 STANDARD_OUT /tmp/milib_c75755eed57dabbd859a803e9a3e67daf538d25914575747956584127454 timeInCollate: 8.44s timeInCollatorInit: 641.49ms timeAwaitingO: 300.89ms timeAwaitingI: 2.12s timeInFinalSorting1: 1.18s timeInFinalSorting2: 422.17ms timeInFinalSorting3: 537.89ms /0N (5|27|32): objs=150367 size=8.4MiB /1N (5|27|32): objs=151613 size=8.61MiB /2N (5|27|32): objs=159585 size=9.13MiB /3N (5|27|32): objs=157716 size=9.02MiB /4N (5|27|32): objs=151885 size=8.64MiB /5N (5|27|32): objs=155936 size=8.84MiB /6N (5|27|32): objs=152082 size=8.6MiB /7N (5|27|32): objs=159215 size=8.97MiB /8N (5|27|32): objs=158209 size=8.91MiB /9N (5|27|32): objs=146436 size=7.94MiB /10N (5|27|32): objs=159254 size=9.26MiB /11N (5|27|32): objs=156867 size=8.74MiB /12N (5|27|32): objs=160503 size=9.27MiB /13N (5|27|32): objs=159758 size=9.02MiB /14N (5|27|32): objs=154406 size=8.61MiB /15N (5|27|32): objs=154516 size=8.78MiB /16N (5|27|32): objs=161166 size=9.22MiB /17N (5|27|32): objs=161892 size=9.3MiB /18N (5|27|32): objs=163683 size=9.61MiB /19N (5|27|32): objs=162205 size=9.07MiB /20N (5|27|32): objs=155509 size=8.88MiB /21N (5|27|32): 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size=3.73KiB /30/0N (2|25|36): objs=40593 size=1MiB /30/1N (2|25|36): objs=40259 size=812.92KiB /30/2N (2|25|36): objs=34796 size=670.04KiB /30/3S (2|25|36): objs=156 size=319B /30/4S (2|25|36): objs=141 size=294B /30/5S (2|25|36): objs=160 size=338B /30/6N (2|25|36): objs=782 size=2.97KiB /30/7N (2|25|36): objs=3939 size=18.3KiB /30/8S (2|25|36): objs=144 size=161B /30/9N (2|25|36): objs=2687 size=11.55KiB /30/10S (2|25|36): objs=181 size=118B /30/11N (2|25|36): objs=2276 size=9.62KiB /30/12S (2|25|36): objs=156 size=329B /30/14S (2|25|36): objs=168 size=247B /30/15N (2|25|36): objs=2491 size=10.73KiB /30/16S (2|25|36): objs=159 size=207B /30/17N (2|25|36): objs=1655 size=6.78KiB /30/18S (2|25|36): objs=146 size=244B /30/19N (2|25|36): objs=610 size=2.08KiB /30/20S (2|25|36): objs=162 size=332B /30/21N (2|25|36): objs=4833 size=22.75KiB /30/22S (2|25|36): objs=144 size=249B /30/23S (2|25|36): objs=155 size=333B /30/24S (2|25|36): objs=151 size=200B /30/25N (2|25|36): objs=1351 size=5.43KiB /30/26S (2|25|36): objs=167 size=197B /30/27N (2|25|36): objs=3559 size=16.01KiB /30/28S (2|25|36): objs=164 size=188B /30/29N (2|25|36): objs=4165 size=18.71KiB /30/30S (2|25|36): objs=168 size=118B /30/31N (2|25|36): objs=577 size=2.1KiB /30/32S (2|25|36): objs=155 size=207B /30/33N (2|25|36): objs=7012 size=33.68KiB /30/34S (2|25|36): objs=160 size=87B /30/35N (2|25|36): objs=326 size=996B /31/0N (2|25|36): objs=3969 size=17.52KiB /31/1S (2|25|36): objs=176 size=133B /31/2N (2|25|36): objs=35450 size=674.7KiB /31/3N (2|25|36): objs=38205 size=884.17KiB /31/4N (2|25|36): objs=38939 size=857.73KiB /31/5N (2|25|36): objs=7515 size=36.02KiB /31/6S (2|25|36): objs=181 size=142B /31/8S (2|25|36): objs=169 size=95B /31/9N (2|25|36): objs=298 size=900B /31/10S (2|25|36): objs=154 size=236B /31/11N (2|25|36): objs=10025 size=55.89KiB /31/12S (2|25|36): objs=172 size=302B /31/13N (2|25|36): objs=2884 size=12.2KiB /31/14S (2|25|36): objs=167 size=223B /31/15N (2|25|36): objs=5468 size=24.5KiB /31/16S (2|25|36): objs=166 size=150B /31/18S (2|25|36): objs=128 size=123B /31/19N (2|25|36): objs=858 size=3.37KiB /31/20S (2|25|36): objs=160 size=173B /31/21N (2|25|36): objs=1054 size=4.38KiB /31/22S (2|25|36): objs=141 size=239B /31/23N (2|25|36): objs=1057 size=4.39KiB /31/24S (2|25|36): objs=172 size=330B /31/25N (2|25|36): objs=1019 size=4.12KiB /31/26S (2|25|36): objs=137 size=276B /31/27N (2|25|36): objs=3726 size=16.78KiB /31/28S (2|25|36): objs=155 size=249B /31/29S (2|25|36): objs=167 size=171B /31/30S (2|25|36): objs=160 size=322B /31/31N (2|25|36): objs=749 size=2.98KiB /31/32S (2|25|36): objs=187 size=270B /31/33S (2|25|36): objs=168 size=289B /31/34S (2|25|36): objs=120 size=112B /31/35N (2|25|36): objs=447 size=1.64KiB com.milaboratory.util.sorting.HashSorterTest > test2 SKIPPED com.milaboratory.util.sorting.SortingUtilTest > test1 STANDARD_OUT Collation: 75.42ms Sorting: 72.26ms 1 217 41496 99530 99999 com.milaboratory.core.io.sequence.fasta.RandomAccessFastaReaderTest > test1nt STANDARD_ERROR Indexing milib_bfa559506255b5565688716a4f5634dd44a7b7e3532103409809413561.fasta: 0% Indexing milib_bfa559506255b5565688716a4f5634dd44a7b7e3532103409809413561.fasta: done com.milaboratory.core.io.sequence.fasta.RandomAccessFastaReaderTest > test1 STANDARD_ERROR Indexing milib_bfa559506255b5565688716a4f5634dd44a7b7e3532103409809413561.fasta: 0% Indexing milib_bfa559506255b5565688716a4f5634dd44a7b7e3532103409809413561.fasta: done com.milaboratory.core.io.sequence.fasta.RandomAccessFastaReaderTest > test2 STANDARD_ERROR Indexing milib_c4eec1d801e5d3f225c46cbd7da998ff114ede0a445510861062310811.tmp: 0% Indexing milib_c4eec1d801e5d3f225c46cbd7da998ff114ede0a445510861062310811.tmp: done com.milaboratory.core.io.util.IOUtilTest > test111 STANDARD_OUT 3 3 -2147483648 -9223372036854775808 com.milaboratory.core.tree.SequenceTreeMapTest > testCase9 STANDARD_OUT Hit 1 0 ac-gacTtgactg 11 0 acTgac-tgactg 11 Hit 2 0 ac-gactTgactg 11 0 acTgact-gactg 11 com.milaboratory.core.tree.SequenceTreeMapTest > optimalityAndScopeTest STANDARD_OUT --NW alignments-- CASSLAPGATN-KLFF CASS-APGATNEKLFF CASSLAPGATN-KLFF CASSLAPG-TNEKLFF CASSLAPGATN-KLfF CASSLAPG-TNEKLyF --STM alignments-- CASSLAPGATN-KLFF CASS-APGATNEKLFF CASSLAPGATN-KLFF CASSLAPG-TNEKLFF CASSlAPGATN-KLFF CASSa-PGATNEKLFF CASSLAPGaTN-KLFF CASSLAPGt-NEKLFF CASSlAPGATN-KLFF CA-SsAPGATNEKLFF CASSlAPGATN-KLFF CAS-sAPGATNEKLFF CASSLAPGATNk-LFF CASS-APGATNeKLFF CASSLAPGaTN-KLFF CASSLAP-gTNEKLFF CASSLAPGATNk-LFF CASSLAPG-TNeKLFF CASSLAPGATN-KLfF CASSLAPG-TNEKLyF ------------------ com.milaboratory.core.tree.PrimerGenerator > generate SKIPPED com.milaboratory.core.sequence.quality.QualityTrimmerTest > testParametersSerialization0 STANDARD_OUT { "averageQualityThreshold": 7.0, "windowSize": 6 } com.milaboratory.core.sequence.quality.QualityAggregatorTest > test1 STANDARD_OUT 37 com.milaboratory.core.sequence.quality.QualityAggregatorTest > test2 STANDARD_OUT 615 com.milaboratory.core.sequence.quality.QualityAggregatorTest > test3 STANDARD_OUT 2573 com.milaboratory.core.sequence.ShortSequenceSetTest > test1 STANDARD_OUT 99941 elements with 366.41KiB in raw nucleotide entropy serialized into 273.22KiB com.milaboratory.core.sequence.AminoAcidSequenceTest > testName STANDARD_OUT 3 com.milaboratory.core.sequence.AminoAcidSequenceTest > testConvertPositionSync1 STANDARD_OUT FromCenter 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 FromLeftWithoutIncompleteCodon 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 FromLeftWithIncompleteCodon 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 FromRightWithoutIncompleteCodon 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 FromRightWithIncompleteCodon 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 com.milaboratory.core.sequence.GeneticCodeTest > generateExtendedGeneticCode SKIPPED com.milaboratory.core.sequence.AminoAcidAlphabetTest > testCalculateMatches SKIPPED com.milaboratory.core.sequence.NucleotideAlphabetTest > testCalculateIntersections SKIPPED com.milaboratory.core.mutations.MutationsTest > testCanonical1 STANDARD_OUT GCGTTTAGTGCATTCTAAGGATGCGGCACGGGGGTGCATTCATCGGCACCGGGACTCCCACTGCTCCGATATTTTTTTGTCGTTGATCCGACTGCACTAGAGATTCTCAACTAATTGTACGATCGGAATCGCGCGCCGTCTCACGGCGGCGGAATCCACTAGGTTTCAGGTAGCCACACAAGTGTTACTGTTGACACGCCATCTTGCGGTAATTCCGAGTTTCGTGTATACAGATACCTCCCAGAACGGGACACGCGAGACGGTCGCACGCAGACGGTTGGACCACTGCCCTTGATCTGCGGTAAAGCGGGTAGGGTGACCATATAACGGATCAGTTGTGCCTCACGATAAGCCTGCTAGCCACGAAGTCAGTGAGGAACTAGTAGTATATGCAAGCACGAACCGAGGCAGCGGCCGACCTTAAAACATCTTTGGCACA GCGTTTAGTGCATTCTAAGGATGCGGCACGGGGGTGCATTCATCGGCACCGGGATCCACTGCCTCCGATATTTTTTTGTCGTTGATCCGACTGCACTAGAGATCTCAACTAATTGACGATCGGAATCCGCGCCGTCTCACGGTGCGGAATCCACAGGTTCAGCGTAGCCCACAATGTGTTACTTACTACGCCATCTTGCGGTAATTCCGAGTTTCGTTATACAGTTCCTCGCCCGTACGGGACACGCGAGACGGTCGCACACAGACAGTTGGACCACTGCCTTGATCTGCCGTAAAGCGGTAGTGACCTAAACGGATTAGTTGTGCCTCACGATAGCGCTTCTAGTCACGAAGTCAGTGAGGACATGTTGTATAGCAGTACGACCGAGGCAGCGGCCGACCGTTAAAACATTTGGCAA GCGTTAGTGCATTCTAAGGATGTCTGCACGGTGGTGCATTCATCGGCACGGGACCACTGCCTCCGATATTTTTTGTGCCTTGACCGACTCACTAGAGTCTCAACTAATTGACGATCGGAATCCGCGCCGTCTCACGGTGCGTAATCCACAGGTTCAACGTAGTCCACAATGTGTTACTTACTACGCCATCTTGCGGTAATTCGAGTTCGTTATACAGTTCCTCGCCCGTACGGGACACGCGATGACGGCTCGCACCAGACAGTTGGGTCCGCTGCCTTTGATCTGCCGTAAAGCTGTAGTGACCTAACGGATTAGTTGTGCCTCCACGATAGCGCTTCTAGTTACGATCTCAGTGAGACATGTGATAGCAGTACGACCGAGGCAGCGGCCGACCCGTTAAAACATTTGGGA 0 GCG-TTAGTGCATTCTAAGGATGTCTGCACGGTGGTGCATTCATCGGCA-CGGGA---CCACTGCCTCCGATA-TTTTTTGTGCCTTGA-CCGACT-CACTAGAG--TCTCAACTAATTG-ACGATCGGAATC-CGCGCCGTCTCACGG-TGCGTAATCCAC-AGG-TTCAACGTAGTCCACA-ATGTGTTAC--TT-ACTACGCCATCTTGCGGTAATT-CGAG-TTCGT-TATACAG-TTCCTCGCCCGTACGGGACACGCGATGACGGCTCGCAC-CAGACAGTTGGGTCCGCTGCCTTTGATCTGCCGTAAAGC-TGTA--GTGACC---TAACGGATTAGTTGTGCCTCCACGAT-AGCGCTTCTAGTTACGATCTCAGTGA-G-AC-A-T-GTGATA-GC-AGTACG-ACCGAGGCAGCGGCCGACCCGTTAAAACA--TTTGG--GA 410 ||| ||||||||||||||||||| | |||||| |||||||||||||||| ||||| |||||| |||||||| |||||||| | |||| |||||| |||||||| ||||||||||||| |||||||||||| ||||||||||||||| ||| ||||||| ||| ||| | |||| ||||| | ||||||| || || ||||||||||||||||||| |||| ||||| ||||||| | |||| || | ||||||||||||| ||||| |||||| ||||| ||| || || ||||| ||||||||| ||||||| ||| |||||| |||||||| |||||||||| |||||| ||| || |||| |||| ||||||| | || | | || ||| || || ||| ||||||||||||||||| || |||||||| ||||| | 0 GCGTTTAGTGCATTCTAAGGATG-CGGCACGGGGGTGCATTCATCGGCACCGGGACTCCCACTG-CTCCGATATTTTTTTGT-CGTTGATCCGACTGCACTAGAGATTCTCAACTAATTGTACGATCGGAATCGCGCGCCGTCTCACGGCGGCGGAATCCACTAGGTTTC-AGGTAG-CCACACAAGTGTTACTGTTGAC-ACGCCATCTTGCGGTAATTCCGAGTTTCGTGTATACAGATACCTC-CCAGAACGGGACACGCGA-GACGG-TCGCACGCAGACGGTT-GGACCACTGCCCTTGATCTGCGGTAAAGCGGGTAGGGTGACCATATAACGGATCAGTTGTGCCT-CACGATAAGC-CTGCTAGCCACGAAGTCAGTGAGGAACTAGTAGT-ATATGCAAGCACGAACCGAGGCAGCGGCCGA-CC-TTAAAACATCTTTGGCACA 438 [I3:T,D5:T,I54:C,I54:T,D55:T,D58:C,I71:T,D75:T,I102:A,S102:A->T,D104:T,I146:C,S146:C->G,D147:G,I163:T,D164:T,D167:A,S168:G->A,I169:G,D173:C,D175:A,I180:C,I181:A,I188:T,S188:T->G,D189:G,I214:C,D215:C,I219:T,D221:T,D279:G,S281:A->G,I282:A,D288:C,S291:T->C,I293:T,I300:G,D301:G,I308:G,D309:G,I313:G,D315:G,I321:A,I321:T,D324:T,D326:A,I349:A,D350:A,D366:A,S367:G->A,I368:G,I375:G,S376:G->A,D378:A,I382:G,I382:T,I382:A,D384:A,D385:G,D386:T,I400:A,D401:A,I428:T,I428:C,D429:C,D431:T,I435:C,I435:A,D437:C,D438:A] 0 GCG-TTTAGTGCATTCTAAGGATGCGGCACGGGGGTGCATTCATCGGCACCGGGA--CTCCCACTGCTCCGATA-TTTTTTTGTCGTTGATCCGACTGCACTAGAG-ATTCTCAACTAATTGTACGATCGGAATCGCGCGCCGTCTCACGG-CGGCGGAATCCACTAGG-TTTCAG-GTAGCCACACA-A-GTGTTAC-TGTTGACACGCCATCTTGCGGTAATT-CCGAG-TTTCGTGTATACAGATACCTCCCAGAACGGGACACGCGAGACGGTCGCACGCAGACGGTTGGA-CCACTGCCCTT-GATCTGC-GGTAAAGC-GGGTA-GGGTGACC--ATATAACGGATCAGTTGTGCCTCACGAT-AAGCCTGCTAGCCACGAAG-TCAGTGA-GGAACTA---GTAGTATATGCAAGCACG-AACCGAGGCAGCGGCCGACCTTAAAACA--TCTTTGG--CACA 438 ||| || |||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| |||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | || |||| | |||| | ||||||| |||||||||||||||||||||||| | ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || | ||||||| | |||||| | ||| || ||||| ||| | |||||||||||||||||||||| | ||||||||||||||| ||||||| | | ||| || ||||||||||||| | |||||||||||||||||||||||||| | | ||| || 0 GCGTTT-AGTGCATTCTAAGGATGCGGCACGGGGGTGCATTCATCGGCACCGGGACTC-CC-ACTGCTCCGATATTTTT-TTGTCGTTGATCCGACTGCACTAGAGATT-CTCAACTAATTGTACGATCGGAATCGCGCGCCGTCTCACGGCG-GCGGAATCCACTAGGTT-TC-AGGTAG-C-CACACAAGTGTTACTG-TTGACACGCCATCTTGCGGTAATTCC-GAGTTT-CGTGTATACAGATACCTCCCAGAACGGGACACGCGAGACGGTCGCACGCAGACGGTT-GGACCACTG-CCCTTGATCTGCGG-TAAAGCGG-GTAGGG-TGACCATATA-A-CGGATCAGTTGTGCCTCACGATAA-GCCTGCTAGCCACGA-AGTCAGTGAGGAA-CTAGTAGT---ATATGCAAGCACGAA-CCGAGGCAGCGGCCGACCTTAAAACATCT-T-TGGCACA-- 438 com.milaboratory.core.mutations.MutationsUtilTest > test1111 STANDARD_OUT S([\QAGCTNRYSWKMBDHV\E])(\d+)([\QAGCTNRYSWKMBDHV\E])|D([\QAGCTNRYSWKMBDHV\E])(\d+)|I(\d+)([\QAGCTNRYSWKMBDHV\E]) S([\Q*ACDEFGHIKLMNPQRSTVWY_XBJZ\E])(\d+)([\Q*ACDEFGHIKLMNPQRSTVWY_XBJZ\E])|D([\Q*ACDEFGHIKLMNPQRSTVWY_XBJZ\E])(\d+)|I(\d+)([\Q*ACDEFGHIKLMNPQRSTVWY_XBJZ\E]) com.milaboratory.core.mutations.MutationsUtilTest > nt2AAWithMappingManual1 STANDARD_OUT [I2C::SM0I, I2G::I1A, I2C::I1A, SG2C:SM0I:I1A] com.milaboratory.core.mutations.MutationsUtilTest > nt2AAWithMappingManual2 STANDARD_OUT [S0:T->N,D13:V,S14:S->Y,S15:P->R,S16:W->P,S17:Y->G,S18:D->T,S19:P->I,S20:G->P,S21:D->A,S22:K->T,S23:A->K,S24:F->R,S25:G->S,S26:P->D,I27:S] [-1, -1, 9, 15] com.milaboratory.core.mutations.MutationsUtilTest > nt2AAWithMappingManual3 STANDARD_OUT 0 CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTACGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA 295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||| || ||||| ||| || |||||||||||||| 0 CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTACGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACATTCTATGCAGAGAAGTTCCAGGGCAGAGTCACCATGACCACAGACGCATCCACGACCACAGCCTATATGGAGCTGAGGAGCCTGACATTTGACG-----GCCACATACTACTGTGCGAGAGA 290 [S58:N->F,S61:Q->E,S63:L->F,S73:T->A,S76:S->T,S86:R->T,S87:S->F,S89:D->G,D90:T,D91:A,S92:V->H,S93:Y->I,S94:Y->L,S95:C->L,S96:A->C,S97:R->E,S98:_->R] QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYGISWVRQAPGQGLEWMGWISAYNGNTFYAEKFQGRVTMTTDASTTTAYMELRSLTFDGHILLCER QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYGISWVRQAPGQGLEWMGWISAYNGNTFYAEKFQGRVTMTTDASTTTAYMELRSLTFDGHILLCER [S58:N->F,S61:Q->E,S63:L->F,S73:T->A,S76:S->T,S86:R->T,S87:S->F,S89:D->G,D90:T,D91:A,S92:V->H,S93:Y->I,S94:Y->L,S95:C->L,S96:A->C,S97:R->E,S98:_->R] [0, 0, 1, 2, 3, 4, -1, 5, 6, 7, 7, 8, 8, 8, 10, 10, 11, 12] com.milaboratory.core.mutations.MutationsUtilTest > nt2AAWithMappingManual4 STANDARD_OUT [S3:S->M,D4:D,S5:_->I] com.milaboratory.core.mutations.MutationTest > exportRegexps STANDARD_OUT S([\QAGCTNRYSWKMBDHV\E])(\d+)([\QAGCTNRYSWKMBDHV\E])|D([\QAGCTNRYSWKMBDHV\E])(\d+)|I(\d+)([\QAGCTNRYSWKMBDHV\E]) S([\Q*ACDEFGHIKLMNPQRSTVWY_XBJZ\E])(\d+)([\Q*ACDEFGHIKLMNPQRSTVWY_XBJZ\E])|D([\Q*ACDEFGHIKLMNPQRSTVWY_XBJZ\E])(\d+)|I(\d+)([\Q*ACDEFGHIKLMNPQRSTVWY_XBJZ\E]) com.milaboratory.core.merger.MergerParametersTest > test2 STANDARD_OUT { "qualityMergingAlgorithm": "SumSubtraction", "partsLayout": "Collinear", "minimalOverlap": 15, "maxQuality": 50, "minimalIdentity": 0.8, "identityType": "Unweighted" } com.milaboratory.core.RangeTest > test23e14 STANDARD_OUT 1000001 1010100 1000111 1000011 1000010 com.milaboratory.core.motif.BitapPatternTest > ttt STANDARD_OUT 0 ATTWCCGACA 9 ||| |||| 20 ATTT--GACA 27 [S3:W->T,D4:C,D5:C] 24 -26 com.milaboratory.core.alignment.AlignmentHelperTest > test1 STANDARD_OUT 0 GAGGTGCAGCTGGTGGAGTCTGGGGGAGGC 29 |||||||||||||||||||||||||||||| 0 GAGGTGCAGCTGGTGGAGTCTGGGGGAGGC 29 30 TTGGT-ACAGCCTGGGGGGTCCCTGAGACT 58 |||| | |||||||||||||| |||||| 30 CTGGTCA-AGCCTGGGGGGTCCATGAGACA 58 59 CTCCTGTGCAGCCTCTGGATTCACCTTCAG 88 |||||||||||||||||||||| ||||||| 59 CTCCTGTGCAGCCTCTGGATTCCCCTTCAG 88 89 TAGC-TATAGCATGAACTGGGTCCGCCAGG 117 || | ||||||||||||||||||||||||| 89 TA-CTTATAGCATGAACTGGGTCCGCCAGG 117 118 CTCCAGGGAAGGGGCTGGAGTGGGTTTCAT 147 ||||||||||||||||||||||||| |||| 118 CTCCAGGGAAGGGGCTGGAGTGGGTCTCAT 147 148 ACATTAGTAGTAGTAGTAG-TACCATATAC 176 |||||||||| ||||||| || |||||| 148 CCATTAGTAGTGGTAGTAGTTA-CATATAT 176 177 TACGCAGACTCTGTGAAGGGCCGATTCACC 206 ||||||||||| |||||||||||||||||| 177 TACGCAGACTCCGTGAAGGGCCGATTCACC 206 207 ATCTCCAGAGACAATGCCAAGAACTCACTG 236 |||||||||||||| ||||||||||||||| 207 ATCTCCAGAGACAACGCCAAGAACTCACTG 236 237 TATCTGCAAATGAACAGCCTGAGAGACGAG 266 ||||||||||||||||||||||||| |||| 237 TATCTGCAAATGAACAGCCTGAGAGCCGAG 266 267 GACACGGCTGTGTATTACTGTGC 289 ||||||||||||||||||||||| 267 GACACGGCTGTGTATTACTGTGC 289 com.milaboratory.core.alignment.BandedAffineAlignerTest > test11 STANDARD_OUT 0 --------------------- -1 0 ATAAAAAAAAAAACGAGCTAG 20 0 --------------------- -1 0 ATAAAAAAAAAAACGAGCTAG 20 com.milaboratory.core.alignment.BandedAffineAlignerTest > test23 STANDARD_OUT 0 atgcggggatgc 11 0 atgcggggatgc 11 com.milaboratory.core.alignment.BandedAffineAlignerTest > test1 STANDARD_OUT 0 at-----------cgagctagTTTTTTTTTTT 20 0 atAAAAAAAAAAAcgagctag----------- 20 0 at-----------cgagctagTTTTTTTTTTT 20 0 atAAAAAAAAAAAcgagctag----------- 20 com.milaboratory.core.alignment.BandedAffineAlignerTest > test2 STANDARD_OUT 0 atgcGGGGatgc 11 0 atgcTA--atgc 9 0 atgcGGGGatgc----------- 11 0 atgcTA--atgcTTTTTTTTTTT 20 com.milaboratory.core.alignment.BandedAffineAlignerTest > test3 STANDARD_OUT 0 cgtaGGGGcgta 11 11 cgta--ATcgta 20 0 -----------cgtaGGGGcgta 11 0 TTTTTTTTTTTcgtaAT--cgta 20 com.milaboratory.core.alignment.BandedAffineAlignerTest > test4 STANDARD_OUT 0 atgcggggat-gTTTTT 15 0 atgcggggatAg----- 11 0 atgcggggat-gTTTTTTT 17 0 atgcggggatAg------- 11 com.milaboratory.core.alignment.BandedAffineAlignerTest > test5 STANDARD_OUT 7 g-taggggcgta 17 0 gAtaggggcgta 11 0 TTTTTTTg-taggggcgta 17 0 -------gAtaggggcgta 11 com.milaboratory.core.alignment.BandedAffineAlignerTest > test6 STANDARD_OUT 0 0 0 0 com.milaboratory.core.alignment.BandedAffineAlignerTest > semiGlobalLeft1 STANDARD_OUT 0 gCccTtgtgatgacccagactccagcctccgtgGAGgCaGctgtgggaggcacagtcaccatcaagtgccaggccagtcagagcattagcaacctcttaGCCTGGTATCAGCAGAAACCAGGGCAGCCTCCCAAGCTCCTGATCTATTATGCATCCGATCTGGcatctggggtctcatcaaggttcaaaggcagtggatctgggacagagtAcactctcaccatcagTggcgtgcagtgtgccgatgctgccacttactac 260 1 gAccCtgtgatgacccagactccagcctccgtgTCTgAaCctgtgggaggcacagtcaccatcaagtgccaggccagtcagagcattagcaacctctta-------------------------------------------------------------NNNcatctggggtctcatcaaggttcaaaggcagtggatctgggacagagtTcactctcaccatcagCggcgtgcagtgtgccgatgctgccacttactac 200 com.milaboratory.core.alignment.BandedLinearAlignerTest > testCase1 STANDARD_OUT GCGTGAAGACTGCAGGCATTGAGTACGTTACTAGTCCAGTGGGGCCCAACCGTAACATTGCGTGTGACTGGTTGCTTAGCGGGTGACGGCGTTTCAGGTTACGCCCTCTGTGCATCACCGATAGCGTTGTTTGAGCTTTCTAACGTCTCAAACCTGCTTGCGCCCTACGGTTTCTCTATATATACACGAAAGGGGCTGGTCGCAACCTCGCAATTCTATCCCTCCAACCTCCCTCGAATTTTT AAAGCGTGAAGACTTGCAGGCATTGGTACGTTATTAGTCCAGTGGGGCCACAACCGTAACATTGCGTGTGACTGGTGCTTAGCGGGTGACGGCGTTCAGGTTACGCCCTCTGTGCATCACCGATTAGCGTTGTCTGAGCTTTCTAACGTCTCAAACCTGCTTGCGCCCTACGGTTTCTCTATAGTATCACGAAAGGGTCTGGTCGCAACCTCGCAATTCTATCCCTCCAACCTCCCTTGAATTTTTCTA com.milaboratory.core.alignment.BandedLinearAlignerTest > testGlobal1 STANDARD_OUT 1 AATTGACA 8 |||||| 0 TATTGACT 7 com.milaboratory.core.alignment.BandedLinearAlignerTest > testGlobal2 STANDARD_OUT 1 AATTGACAG 9 |||||| | 0 TATTGAC-G 7 com.milaboratory.core.alignment.BandedLinearAlignerTest > testGlobal3 STANDARD_OUT 0 TATTGACT 7 |||||| 1 AATTGACA 8 com.milaboratory.core.alignment.BandedLinearAlignerTest > testGlobal4 STANDARD_OUT 0 TATTGAC-G 7 |||||| | 1 AATTGACAG 9 com.milaboratory.core.alignment.kaligner1.KMapperTest > testBestOffset2 STANDARD_OUT -205 com.milaboratory.core.alignment.kaligner1.KAlignerTest > testRandomCorrectness STANDARD_OUT C=1182;I=0;M=0;ScE=0;R=0.0 AlignmentTime = 241.69us C=1642;I=1;M=0;ScE=0;R=0.0 AlignmentTime = 123.68us C=2048;I=0;M=0;ScE=0;R=0.0 AlignmentTime = 131.73us C=2142;I=0;M=0;ScE=0;R=8.333333333333333E-7 AlignmentTime = 83.82us com.milaboratory.core.alignment.kaligner1.KAlignerTest > testRandom1 STANDARD_OUT ##teamcity[buildStatisticValue key='kmFound' value='0.9449'] ##teamcity[buildStatisticValue key='kmWrong' value='1.0E-4'] ##teamcity[buildStatisticValue key='kmFalse' value='0.0058'] com.milaboratory.core.alignment.kaligner1.KAlignerTest > testRandomCorrectnessConcurrent STANDARD_OUT C=3000;I=0;M=0;ScE=0;R=0.0 AlignmentTime = 93.12us C=2999;I=0;M=0;ScE=0;R=0.0 AlignmentTime = 97.41us C=2999;I=0;M=0;ScE=0;R=8.333333333333333E-7 AlignmentTime = 100.39us C=3000;I=0;M=0;ScE=0;R=8.333333333333333E-7 AlignmentTime = 100.20us com.milaboratory.core.alignment.MultiAlignmentHelperTest > test1 STANDARD_OUT 8 AGACACAGATACA 20 ||||||| ||||| 0 AGACACATATACA 12 0 GATACATTAGACACAGATACA--- 20 ||||||| ||||| 0 --------AGACACATATACACAG 15 0 GATACATTAGA---CACAGATACA 20 ||||||||||| |||||||||| 5 GATACATTAGAGACCACAGATACA 28 0 GATAC-----ATTAGA---CACAGATACA 20 ||||| |||||| |||||||||| 0 GATACGATACATTAGAGACCACAGATACA 28 Quality 78778 878777 7778887878 Subject 0 GATAC-----ATTAGA---CACAGATACA--- 20 Query0 0 aga---cacaTataca 12 Query1 0 -------------aga---cacaTatacaCAG 15 Query2 5 gatac-----attagaGACcacagataca 28 Query3 0 gatacGATACattagaGACcacagataca 28 Quality 78778 Subject 0 GATAC 4 Query1 0 ----- 0 Query2 5 gatac 9 Query3 0 gatac 4 Quality Subject 5 ----- 5 Query1 0 ----- 0 Query2 10 ----- 10 Query3 5 GATAC 9 Quality 87877 Subject 5 ATTAG 9 Query0 0 ag 1 Query1 0 ---ag 1 Query2 10 attag 14 Query3 10 attag 14 Quality 7 7 Subject 10 A---C 11 Query0 2 a---c 3 Query1 2 a---c 3 Query2 15 aGACc 19 Query3 15 aGACc 19 Quality 77888 Subject 12 ACAGA 16 Query0 4 acaTa 8 Query1 4 acaTa 8 Query2 20 acaga 24 Query3 20 acaga 24 Quality 7878 Subject 17 TACA- 20 Query0 9 taca 12 Query1 9 tacaC 13 Query2 25 taca 28 Query3 25 taca 28 Quality Subject 21 -- 21 Query1 14 AG 15 0 GATAC-----ATTAGA---CACAGATACA--- 20 0 ...---....T..... 12 0 -------------...---....T.....CAG 15 5 .....-----......GAC.......... 28 0 .....GATAC......GAC.......... 28 787788787777778887878 0 GATACATTAGACACAGATACA 20 com.milaboratory.core.alignment.MultiAlignmentHelperTest > test2 STANDARD_OUT 15 TATAGGGAGAACTCCGATCGACATCG 40 ||||||||| ||||||||||||||| 0 TATAGGGAG--CTCCGATCGACATCG 23 56 CGATCC--CGGTGACAAAGCGTTCGGACC 82 |||||| ||||||||||||||||||||| 0 CGATCCTTCGGTGACAAAGCGTTCGGACC 28 36 CATCGGGTATCGCCCTGGTACG 57 |||| ||||||||||||||||| 0 CATCAGGTATCGCCCTGGTACG 21 0 AACGATGGGCGCAAATATAGGGAGAACTCCGATCGACATCGGGTATCGCCCTGGTACGATCC--CGGTGACAAAGCGTTCGGACCTGTCTGGACGCTAGAACGC 101 0 tatagggag--ctccgatcgacatcg 23 0 cgatccTTcggtgacaaagcgttcggacc 28 0 catcAggtatcgccctggtacg 21 com.milaboratory.core.alignment.AlignmentTrimmerTest > testRandom1 STANDARD_OUT lTrimmed = 1743 rTrimmed = 1682 lTrimmed = 2818 rTrimmed = 2826 com.milaboratory.core.alignment.batch.SimpleBatchAlignerTest > test1 STANDARD_OUT 4 hits. com.milaboratory.core.alignment.blast.BlastDBBuilderTest > test1 SKIPPED com.milaboratory.core.alignment.blast.BlastAlignerTest > test1 SKIPPED com.milaboratory.core.alignment.blast.BlastAlignerTest > simpleRandomTestT1 SKIPPED com.milaboratory.core.alignment.blast.BlastAlignerTest > simpleRandomTestT2 SKIPPED com.milaboratory.core.alignment.blast.BlastAlignerTest > simpleRandomTestT3 SKIPPED com.milaboratory.core.alignment.blast.BlastAlignerExtTest > test16SMicrobial1 SKIPPED com.milaboratory.core.alignment.blast.BlastAlignerExtTest > test1 SKIPPED com.milaboratory.core.alignment.kaligner2.KAligner2Test > testBoundaries STANDARD_OUT 4960 com.milaboratory.core.alignment.kaligner2.KAligner2Test > caseJ1 STANDARD_OUT 52 0 TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAGGA 51 ||||||||||||||||||||||||||||||||||||||||||||||||||| 55 TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAGGG 106 [S51:A->G] (0->52) (55->107) com.milaboratory.core.alignment.kaligner2.KAligner2Test > testCase0 SKIPPED com.milaboratory.core.alignment.kaligner2.KAligner2Test > testSimpleRandomTest STANDARD_OUT Time per query: 489.82us Processed queries: 84 Bad percent: 0.0 False positive percent: 0.535077288941736 Scoring error percent: 1.1904761904761905 com.milaboratory.core.alignment.kaligner2.OffsetPacksAccumulatorTest > testScoreCorrection2 SKIPPED com.milaboratory.core.alignment.kaligner2.KMapper2Test > test11112 STANDARD_OUT ID: 0 Score: 1767 Cluster 0: Q 27 -> T 15 - -12 Q 30 -> T 18 - -12 Q 39 -> T 28 - -11 Q 42 -> T 31 - -11 Q 45 -> T 34 - -11 Q 48 -> T 37 - -11 Q 51 -> T 40 - -11 Cluster 1: Q 84 -> T 50 - -34 Q 87 -> T 53 - -34 Q 90 -> T 56 - -34 Q 93 -> T 59 - -34 Q 96 -> T 62 - -34 Q 99 -> T 65 - -34 Q 111 -> T 79 - -32 Q 114 -> T 82 - -32 Cluster 2: Q 150 -> T 92 - -58 Q 153 -> T 95 - -58 Q 156 -> T 98 - -58 Q 159 -> T 101 - -58 Cluster 3: Q 198 -> T 120 - -78 Q 201 -> T 123 - -78 Q 204 -> T 126 - -78 Q 207 -> T 129 - -78 Q 216 -> T 139 - -77 Q 219 -> T 142 - -77 Q 222 -> T 145 - -77 Q 231 -> T 153 - -78 Q 234 -> T 156 - -78 Q 237 -> T 159 - -78 Q 240 -> T 162 - -78 Cluster 4: Q 246 -> T 178 - -68 Q 249 -> T 181 - -68 Q 252 -> T 184 - -68 Q 255 -> T 187 - -68 Q 258 -> T 190 - -68 Q 261 -> T 193 - -68 Q 262 -> T 194 - -68 com.milaboratory.core.alignment.kaligner2.KMapper2Test > test1111 STANDARD_OUT ID: 0 Score: 1308 Cluster 0: Q 9 -> T 15 - 6 Q 12 -> T 18 - 6 Q 15 -> T 21 - 6 Q 18 -> T 24 - 6 Q 21 -> T 27 - 6 Q 24 -> T 30 - 6 Q 27 -> T 33 - 6 Q 30 -> T 36 - 6 Cluster 1: Q 57 -> T 48 - -9 Q 60 -> T 51 - -9 Q 69 -> T 61 - -8 Q 78 -> T 69 - -9 Q 81 -> T 72 - -9 Q 84 -> T 75 - -9 Q 87 -> T 78 - -9 Cluster 2: Q 123 -> T 89 - -34 Q 126 -> T 92 - -34 Q 129 -> T 95 - -34 Q 132 -> T 98 - -34 Q 135 -> T 101 - -34 Q 150 -> T 116 - -34 Q 168 -> T 132 - -36 Q 171 -> T 135 - -36 Q 174 -> T 138 - -36 Q 177 -> T 141 - -36 Q 180 -> T 144 - -36 Q 183 -> T 147 - -36 Q 185 -> T 149 - -36 com.milaboratory.core.alignment.kaligner2.KMapper2Test > testRandom1 STANDARD_OUT noHits: 293 noHits2: 0 noHits3: 0 wrongTopHit: 38 wrongTopHitS: 30 noCorrectHitInList: 19 Timings: DescriptiveStatistics: n: 100000 min: 5157.0 max: 1.37083958E8 mean: 82268.18267999802 std dev: 1294625.3011856067 median: 65868.5 skewness: 100.05619912046262 kurtosis: 10023.461347890367 Clusters basicSize DescriptiveStatistics: n: 99669 min: 1.0 max: 6.0 mean: 2.8821097833829907 std dev: 1.1051710081999218 median: 3.0 skewness: 0.2782272869754176 kurtosis: -0.7016470045571506 Top Delta DescriptiveStatistics: n: 99688 min: -26.0 max: 0.0 mean: -0.0016250702190833777 std dev: 0.17096448080906662 median: 0.0 skewness: -114.7836183261857 kurtosis: 13953.240609850001 com.milaboratory.core.alignment.AlignerCustomTest > testSemiLocal0 STANDARD_OUT 29.0 2 c----cccTTgaa---tgTtaGTa-----taacta--tct 27 0 cAGTTccc--gaaACCtgCta--aGCTCTtaactaCTtct 35 29.0 2 c----cccTTgaa---tgTtaGTa-----taacta--tct 27 0 cAGTTccc--gaaACCtgCta--aGCTCTtaactaCTtct 35 com.milaboratory.core.alignment.AlignmentTest > testInvert STANDARD_OUT 8 AGACACAGATACA 20 ||||||| ||||| 0 AGACACATATACA 12 0 AGACACATATACA 12 ||||||| ||||| 8 AGACACAGATACA 20 0 GATACATTAGACACAGATACA--- 20 ||||||| ||||| 0 --------AGACACATATACACAG 15 0 --------AGACACATATACACAG 15 ||||||| ||||| 0 GATACATTAGACACAGATACA--- 20 0 GATACATTAGA---CACAGATACA 20 ||||||||||| |||||||||| 5 GATACATTAGAGACCACAGATACA 28 5 GATACATTAGAGACCACAGATACA 28 ||||||||||| |||||||||| 0 GATACATTAGA---CACAGATACA 20 0 GATAC-----ATTAGA---CACAGATACA 20 ||||| |||||| |||||||||| 0 GATACGATACATTAGAGACCACAGATACA 28 0 GATACGATACATTAGAGACCACAGATACA 28 ||||| |||||| |||||||||| 0 GATAC-----ATTAGA---CACAGATACA 20 com.milaboratory.core.alignment.AlignerTest > testCalculateScore1 STANDARD_OUT 1.30us 1.30us 1.30us com.milaboratory.core.alignment.AlignmentIteratorTest > test1 STANDARD_OUT 0 -ATT-AGACA-- 7 ||| || | 0 AATTGGGA-ATT 10 I0AI3GSA3GDC6I8TI8T com.milaboratory.test.TestUtil > testLT STANDARD_OUT Short tests. No system env properties. com.milaboratory.primitivio.blocks.PrimitivOBlocksTest > benchmark1 SKIPPED com.milaboratory.primitivio.blocks.PrimitivOBlocksTest > test1 STANDARD_OUT ================== High compression: false Concurrency: 4 File size: 6799510 Write time: 75.13ms O. Stats: Wall clock time: 75.46ms Total CPU time: 139.04ms User wait time: 55.48ms Serialization time: 92.81ms (66.75%) Checksum calculation time: 3.55ms (2.55%) Compression time: 39.39ms (28.33%) Total IO delay: 11.99ms Concurrency overhead: 3.15ms Uncompressed size: 18.44MiB (~2.08KiB per object) Output size: 6.48MiB (~748B per object; compression = 35.17%) IO speed: 589.5MiB/s Concurrency adjusted uncompressed speed: 460.92MiB/s Actual uncompressed speed: 245.83MiB/s Actual speed: 86.46MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 62 (~107.1KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 I. Stats 1: Wall clock time: 55.08ms Total CPU time: 106.55ms Serialization time: 64.38ms (60.42%) Checksum calculation time: 3.56ms (3.34%) Compression time: 37.26ms (34.97%) Total IO delay: 6.19ms Input size: 6.48MiB Decompressed size: 18.44MiB (compression = 35.17%) IO speed: 1.06GiB/s Concurrency adjusted uncompressed speed: 658.46MiB/s Actual uncompressed speed: 335.22MiB/s Actual speed: 117.9MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 62 (~107.1KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 I. Stats 2: Wall clock time: 125.69ms Total CPU time: 212.36ms Serialization time: 127.84ms (60.2%) Checksum calculation time: 7.15ms (3.36%) Compression time: 75.1ms (35.36%) Total IO delay: 11.97ms Input size: 12.97MiB Decompressed size: 36.87MiB (compression = 35.17%) IO speed: 1.15GiB/s Concurrency adjusted uncompressed speed: 658.46MiB/s Actual uncompressed speed: 294.99MiB/s Actual speed: 103.75MiB/s Objects: 18158 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 124 (~107.1KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 ================== High compression: false Concurrency: 4 File size: 6791878 Write time: 58.33ms O. Stats: Wall clock time: 58.56ms Total CPU time: 75.01ms User wait time: 46.37ms Serialization time: 32.38ms (43.17%) Checksum calculation time: 3.82ms (5.09%) Compression time: 35.96ms (47.95%) Total IO delay: 10.21ms Concurrency overhead: 586.47us Uncompressed size: 18.44MiB (~2.08KiB per object) Output size: 6.48MiB (~748B per object; compression = 35.13%) IO speed: 647.72MiB/s Concurrency adjusted uncompressed speed: 877.95MiB/s Actual uncompressed speed: 317.88MiB/s Actual speed: 111.68MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 20 (~331.63KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 I. Stats 1: Wall clock time: 44.68ms Total CPU time: 61.34ms Serialization time: 20.8ms (33.92%) Checksum calculation time: 3.44ms (5.6%) Compression time: 36.93ms (60.2%) Total IO delay: 4.64ms Input size: 6.48MiB Decompressed size: 18.44MiB (compression = 35.13%) IO speed: 1.58GiB/s Concurrency adjusted uncompressed speed: 1.13GiB/s Actual uncompressed speed: 419.02MiB/s Actual speed: 147.21MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 20 (~331.63KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 I. Stats 2: Wall clock time: 91.91ms Total CPU time: 117.95ms Serialization time: 37.05ms (31.41%) Checksum calculation time: 6.93ms (5.87%) Compression time: 73.67ms (62.46%) Total IO delay: 8.48ms Input size: 12.95MiB Decompressed size: 36.87MiB (compression = 35.13%) IO speed: 1.58GiB/s Concurrency adjusted uncompressed speed: 1.16GiB/s Actual uncompressed speed: 405.21MiB/s Actual speed: 142.36MiB/s Objects: 18158 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 40 (~331.63KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 ================== High compression: false Concurrency: 1 File size: 6799510 Write time: 83.64ms O. Stats: Wall clock time: 84.28ms Total CPU time: 64.48ms User wait time: 75.74ms Serialization time: 23.22ms (36.01%) Checksum calculation time: 3.42ms (5.3%) Compression time: 34.54ms (53.56%) Total IO delay: 10.18ms Concurrency overhead: 1.3ms Uncompressed size: 18.44MiB (~2.08KiB per object) Output size: 6.48MiB (~748B per object; compression = 35.17%) IO speed: 648.45MiB/s Concurrency adjusted uncompressed speed: 245.83MiB/s Actual uncompressed speed: 219.49MiB/s Actual speed: 77.2MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 62 (~107.1KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Checksum ok! I. Stats 1: Wall clock time: 37.59ms Total CPU time: 57.33ms Serialization time: 17.08ms (29.8%) Checksum calculation time: 3.38ms (5.9%) Compression time: 36.22ms (63.18%) Total IO delay: 5.2ms Input size: 6.48MiB Decompressed size: 18.44MiB (compression = 35.17%) IO speed: 1.27GiB/s Concurrency adjusted uncompressed speed: 297.37MiB/s Actual uncompressed speed: 498.29MiB/s Actual speed: 175.26MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 62 (~107.1KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 I. Stats 2: Wall clock time: 75.07ms Total CPU time: 114.53ms Serialization time: 33.8ms (29.51%) Checksum calculation time: 6.8ms (5.93%) Compression time: 72.43ms (63.24%) Total IO delay: 9.77ms Input size: 12.97MiB Decompressed size: 36.87MiB (compression = 35.17%) IO speed: 1.41GiB/s Concurrency adjusted uncompressed speed: 297.37MiB/s Actual uncompressed speed: 491.65MiB/s Actual speed: 172.92MiB/s Objects: 18158 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 124 (~107.1KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 ================== High compression: false Concurrency: 1 File size: 6791878 Write time: 84.71ms O. Stats: Wall clock time: 85.36ms Total CPU time: 68.38ms User wait time: 76.73ms Serialization time: 26.08ms (38.13%) Checksum calculation time: 3.4ms (4.97%) Compression time: 35.42ms (51.8%) Total IO delay: 8.19ms Concurrency overhead: 432us Uncompressed size: 18.44MiB (~2.08KiB per object) Output size: 6.48MiB (~748B per object; compression = 35.13%) IO speed: 809.65MiB/s Concurrency adjusted uncompressed speed: 239.44MiB/s Actual uncompressed speed: 216.9MiB/s Actual speed: 76.2MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 20 (~331.63KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Checksum ok! I. Stats 1: Wall clock time: 44.17ms Total CPU time: 61.57ms Serialization time: 17.03ms (27.67%) Checksum calculation time: 3.56ms (5.79%) Compression time: 40.84ms (66.33%) Total IO delay: 4.58ms Input size: 6.48MiB Decompressed size: 18.44MiB (compression = 35.13%) IO speed: 1.58GiB/s Concurrency adjusted uncompressed speed: 279.35MiB/s Actual uncompressed speed: 419.02MiB/s Actual speed: 147.21MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 20 (~331.63KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 I. Stats 2: Wall clock time: 90.4ms Total CPU time: 117.14ms Serialization time: 32.55ms (27.79%) Checksum calculation time: 6.93ms (5.92%) Compression time: 77.39ms (66.07%) Total IO delay: 8.23ms Input size: 12.95MiB Decompressed size: 36.87MiB (compression = 35.13%) IO speed: 1.58GiB/s Concurrency adjusted uncompressed speed: 294.99MiB/s Actual uncompressed speed: 409.71MiB/s Actual speed: 143.94MiB/s Objects: 18158 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 40 (~331.63KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 ================== High compression: true Concurrency: 4 File size: 4156299 Write time: 1.03s O. Stats: Wall clock time: 1.03s Total CPU time: 2.71s User wait time: 964.18ms Serialization time: 25.56ms (0.94%) Checksum calculation time: 3.5ms (0.13%) Compression time: 2.68s (98.8%) Total IO delay: 9.14ms Concurrency overhead: 1.82ms Uncompressed size: 18.44MiB (~2.08KiB per object) Output size: 3.96MiB (~457B per object; compression = 21.5%) IO speed: 440.42MiB/s Concurrency adjusted uncompressed speed: 27.07MiB/s Actual uncompressed speed: 17.99MiB/s Actual speed: 3.87MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 457B Blocks: 62 (~65.47KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 I. Stats 1: Wall clock time: 28.18ms Total CPU time: 53.4ms Serialization time: 16.05ms (30.05%) Checksum calculation time: 3.49ms (6.54%) Compression time: 33.16ms (62.09%) Total IO delay: 4.09ms Input size: 3.96MiB Decompressed size: 18.44MiB (compression = 21.5%) IO speed: 990.94MiB/s Concurrency adjusted uncompressed speed: 1.29GiB/s Actual uncompressed speed: 658.46MiB/s Actual speed: 141.56MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 457B Blocks: 62 (~65.47KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 I. Stats 2: Wall clock time: 63.54ms Total CPU time: 106.76ms Serialization time: 32.3ms (30.26%) Checksum calculation time: 6.95ms (6.51%) Compression time: 66.08ms (61.9%) Total IO delay: 7.86ms Input size: 7.93MiB Decompressed size: 36.87MiB (compression = 21.5%) IO speed: 1.11GiB/s Concurrency adjusted uncompressed speed: 1.29GiB/s Actual uncompressed speed: 585.3MiB/s Actual speed: 125.83MiB/s Objects: 18158 Average object size uncompressed: 2.08KiB Average object size compressed: 457B Blocks: 124 (~65.47KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 ================== High compression: true Concurrency: 4 File size: 4098671 Write time: 1.77s O. Stats: Wall clock time: 1.77s Total CPU time: 2.92s User wait time: 1.6s Serialization time: 25.18ms (0.86%) Checksum calculation time: 3.45ms (0.12%) Compression time: 2.89s (98.92%) Total IO delay: 7.21ms Concurrency overhead: 745.04us Uncompressed size: 18.44MiB (~2.08KiB per object) Output size: 3.91MiB (~451B per object; compression = 21.2%) IO speed: 558.4MiB/s Concurrency adjusted uncompressed speed: 25.19MiB/s Actual uncompressed speed: 10.43MiB/s Actual speed: 2.21MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 451B Blocks: 20 (~200.13KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 I. Stats 1: Wall clock time: 36.31ms Total CPU time: 52.34ms Serialization time: 15.69ms (29.97%) Checksum calculation time: 3.52ms (6.73%) Compression time: 32.98ms (63.01%) Total IO delay: 3.09ms Input size: 3.91MiB Decompressed size: 18.44MiB (compression = 21.2%) IO speed: 1.27GiB/s Concurrency adjusted uncompressed speed: 1.38GiB/s Actual uncompressed speed: 512.14MiB/s Actual speed: 108.58MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 451B Blocks: 20 (~200.13KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 I. Stats 2: Wall clock time: 79.41ms Total CPU time: 104.28ms Serialization time: 31.15ms (29.87%) Checksum calculation time: 6.95ms (6.66%) Compression time: 65.91ms (63.21%) Total IO delay: 5.82ms Input size: 7.82MiB Decompressed size: 36.87MiB (compression = 21.2%) IO speed: 1.53GiB/s Concurrency adjusted uncompressed speed: 1.33GiB/s Actual uncompressed speed: 466.76MiB/s Actual speed: 98.96MiB/s Objects: 18158 Average object size uncompressed: 2.08KiB Average object size compressed: 451B Blocks: 40 (~200.13KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Pending / IO / Serde: 0 / 0 / 1 ================== High compression: true Concurrency: 1 File size: 4156299 Write time: 2.73s O. Stats: Wall clock time: 2.73s Total CPU time: 2.71s User wait time: 2.72s Serialization time: 24.26ms (0.89%) Checksum calculation time: 3.43ms (0.13%) Compression time: 2.68s (98.85%) Total IO delay: 9.1ms Concurrency overhead: 1.56ms Uncompressed size: 18.44MiB (~2.08KiB per object) Output size: 3.96MiB (~457B per object; compression = 21.5%) IO speed: 440.42MiB/s Concurrency adjusted uncompressed speed: 6.77MiB/s Actual uncompressed speed: 6.75MiB/s Actual speed: 1.45MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 457B Blocks: 62 (~65.47KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Checksum ok! I. Stats 1: Wall clock time: 33.93ms Total CPU time: 52.98ms Serialization time: 16.1ms (30.39%) Checksum calculation time: 3.46ms (6.53%) Compression time: 32.99ms (62.27%) Total IO delay: 4.21ms Input size: 3.96MiB Decompressed size: 18.44MiB (compression = 21.5%) IO speed: 990.94MiB/s Concurrency adjusted uncompressed speed: 323.45MiB/s Actual uncompressed speed: 558.69MiB/s Actual speed: 120.11MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 457B Blocks: 62 (~65.47KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 I. Stats 2: Wall clock time: 68.02ms Total CPU time: 106.18ms Serialization time: 32.15ms (30.28%) Checksum calculation time: 6.89ms (6.49%) Compression time: 66.09ms (62.24%) Total IO delay: 7.87ms Input size: 7.93MiB Decompressed size: 36.87MiB (compression = 21.5%) IO speed: 1.11GiB/s Concurrency adjusted uncompressed speed: 323.45MiB/s Actual uncompressed speed: 542.26MiB/s Actual speed: 116.58MiB/s Objects: 18158 Average object size uncompressed: 2.08KiB Average object size compressed: 457B Blocks: 124 (~65.47KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Pending / IO / Serde: 0 / 0 / 1 ================== High compression: true Concurrency: 1 File size: 4098671 Write time: 2.91s O. Stats: Wall clock time: 2.91s Total CPU time: 2.9s User wait time: 2.91s Serialization time: 28.9ms (1%) Checksum calculation time: 3.39ms (0.12%) Compression time: 2.86s (98.79%) Total IO delay: 9.35ms Concurrency overhead: 461.67us Uncompressed size: 18.44MiB (~2.08KiB per object) Output size: 3.91MiB (~451B per object; compression = 21.2%) IO speed: 434.31MiB/s Concurrency adjusted uncompressed speed: 6.34MiB/s Actual uncompressed speed: 6.33MiB/s Actual speed: 1.34MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 451B Blocks: 20 (~200.13KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Checksum ok! I. Stats 1: Wall clock time: 41.22ms Total CPU time: 58.41ms Serialization time: 17.96ms (30.75%) Checksum calculation time: 4.16ms (7.12%) Compression time: 36.18ms (61.94%) Total IO delay: 3.25ms Input size: 3.91MiB Decompressed size: 18.44MiB (compression = 21.2%) IO speed: 1.27GiB/s Concurrency adjusted uncompressed speed: 302.24MiB/s Actual uncompressed speed: 449.68MiB/s Actual speed: 95.34MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 451B Blocks: 20 (~200.13KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 I. Stats 2: Wall clock time: 89.01ms Total CPU time: 116.86ms Serialization time: 35.62ms (30.48%) Checksum calculation time: 8.31ms (7.11%) Compression time: 72.64ms (62.16%) Total IO delay: 6.17ms Input size: 7.82MiB Decompressed size: 36.87MiB (compression = 21.2%) IO speed: 1.27GiB/s Concurrency adjusted uncompressed speed: 299.79MiB/s Actual uncompressed speed: 414.31MiB/s Actual speed: 87.84MiB/s Objects: 18158 Average object size uncompressed: 2.08KiB Average object size compressed: 451B Blocks: 40 (~200.13KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 com.milaboratory.primitivio.blocks.PrimitivOBlocksTest > bigBlocks STANDARD_OUT Pending / IO / Serde / Objs: 1 / 1 / 1 / 7000 Pending / IO / Serde / Objs: 6 / 1 / 1 / 16000 Pending / IO / Serde / Objs: 6 / 1 / 1 / 19000 Pending / IO / Serde / Objs: 6 / 1 / 0 / 20000 Pending / IO / Serde / Objs: 4 / 1 / 0 / 20000 Pending / IO / Serde / Objs: 2 / 1 / 0 / 20000 O. Stats: Wall clock time: 12.61s Total CPU time: 3.51s User wait time: 2.35s Serialization time: 1.22s (34.66%) Checksum calculation time: 417.42ms (11.88%) Compression time: 964.4ms (27.45%) Total IO delay: 11.7s Concurrency overhead: 1.36ms Uncompressed size: 1.86GiB (~97.66KiB per object) Output size: 1.86GiB (~97.66KiB per object; compression = 100%) IO speed: 163.02MiB/s Concurrency adjusted uncompressed speed: 1002.34MiB/s Actual uncompressed speed: 151.32MiB/s Actual speed: 151.32MiB/s Objects: 20000 Average object size uncompressed: 97.66KiB Average object size compressed: 97.66KiB Blocks: 20 (~95.37MiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Gradle Test Executor 1 finished executing tests. Finished generating test XML results (0.224 secs) into: /build/reproducible-path/milib-2.2.0+dfsg/build/test-results/test Generating HTML test report... Finished generating test html results (0.338 secs) into: /build/reproducible-path/milib-2.2.0+dfsg/build/reports/tests/test :test (Thread[#58,Task worker for ':' Thread 3,5,main]) completed. Took 2 mins 38.1 secs. BUILD SUCCESSFUL in 2m 47s 5 actionable tasks: 3 executed, 2 up-to-date create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libmilib-java/ mh_install jh_installjavadoc dh_installdocs dh_installchangelogs dh_perl dh_link jh_installlibs jh_classpath Duplicate specification "V:s" for option "V" jh_manifest jh_depends dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libmilib-java' in '../libmilib-java_2.2.0+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary -O../milib_2.2.0+dfsg-1_i386.buildinfo dpkg-genchanges --build=binary -O../milib_2.2.0+dfsg-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/114724 and its subdirectories I: Current time: Mon Jan 5 00:26:58 -12 2026 I: pbuilder-time-stamp: 1767616018 Tue Dec 3 06:04:00 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos12-i386.debian.net. Tue Dec 3 06:04:00 UTC 2024 I: Preparing to do remote build '2' on ionos12-i386.debian.net. Tue Dec 3 06:11:50 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. Tue Dec 3 06:11:51 UTC 2024 I: milib_2.2.0+dfsg-1_i386.changes: Format: 1.8 Date: Fri, 30 Dec 2022 14:38:35 +0100 Source: milib Binary: libmilib-java Architecture: all Version: 2.2.0+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Pierre Gruet Description: libmilib-java - library for Next Generation Sequencing (NGS) data processing Changes: milib (2.2.0+dfsg-1) unstable; urgency=medium . * New upstream version 2.2.0+dfsg * Refreshing patches * Raising Standards version to 4.6.2 (no change) Checksums-Sha1: afaa8b109948cd86d9c8064d7431f484dda7da43 779768 libmilib-java_2.2.0+dfsg-1_all.deb 2911393174240d754da7158453374260bb9e8410 16428 milib_2.2.0+dfsg-1_i386.buildinfo Checksums-Sha256: cf8dc7019ece63567907a6544526d394dbebdedac4c60730b87bee330b333a69 779768 libmilib-java_2.2.0+dfsg-1_all.deb 2044d00e623ba924468e301a90204a6c126b5133c658a76a9ec48ca3f2fb4a69 16428 milib_2.2.0+dfsg-1_i386.buildinfo Files: ccbe347d52c9109b0bb4b0dd98a9dd28 779768 java optional libmilib-java_2.2.0+dfsg-1_all.deb 03db7275f7748be30ea8fbd6c5b0c381 16428 java optional milib_2.2.0+dfsg-1_i386.buildinfo Tue Dec 3 06:11:52 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_10-34279.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.lym8Atvq/milib_2.2.0+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.lym8Atvq/milib_2.2.0+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.lym8Atvq/milib_2.2.0+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.lym8Atvq/b1/milib_2.2.0+dfsg-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.lym8Atvq/b2/milib_2.2.0+dfsg-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.511s) 0.511s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.029s) 0.029s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 945ms CPU time consumed: 937ms Tue Dec 3 06:11:53 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Tue Dec 3 06:11:53 UTC 2024 I: milib from trixie built successfully and reproducibly on i386. Tue Dec 3 06:11:54 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Dec 3 06:11:54 UTC 2024 I: Submitting 20K b1/milib_2.2.0+dfsg-1_i386.buildinfo.asc Tue Dec 3 06:11:56 UTC 2024 I: Submitting 20K b2/milib_2.2.0+dfsg-1_i386.buildinfo.asc Tue Dec 3 06:11:57 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Dec 3 06:11:57 UTC 2024 I: Done submitting .buildinfo files. Tue Dec 3 06:11:57 UTC 2024 I: Removing signed milib_2.2.0+dfsg-1_i386.buildinfo.asc files: removed './b1/milib_2.2.0+dfsg-1_i386.buildinfo.asc' removed './b2/milib_2.2.0+dfsg-1_i386.buildinfo.asc'