Fri Feb 21 05:24:14 UTC 2025 I: starting to build maqview/trixie/i386 on jenkins on '2025-02-21 05:24'
Fri Feb 21 05:24:14 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_7/58182/console.log
Fri Feb 21 05:24:14 UTC 2025 I: Downloading source for trixie/maqview=0.2.5-12
--2025-02-21 05:24:15-- http://deb.debian.org/debian/pool/main/m/maqview/maqview_0.2.5-12.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2210 (2.2K) [text/prs.lines.tag]
Saving to: ‘maqview_0.2.5-12.dsc’
0K .. 100% 337M=0s
2025-02-21 05:24:15 (337 MB/s) - ‘maqview_0.2.5-12.dsc’ saved [2210/2210]
Fri Feb 21 05:24:15 UTC 2025 I: maqview_0.2.5-12.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: maqview
Binary: maqview
Architecture: any
Version: 0.2.5-12
Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Charles Plessy <plessy@debian.org>, Pranav Ballaney <ballaneypranav@gmail.com>
Homepage: https://maq.sourceforge.net/maqview.shtml
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/maqview
Vcs-Git: https://salsa.debian.org/med-team/maqview.git
Testsuite: autopkgtest
Testsuite-Triggers: maq
Build-Depends: debhelper-compat (= 13), freeglut3-dev, libxi-dev
Package-List:
maqview deb science optional arch=any
Checksums-Sha1:
d4d9d9cb452745ed7fa780451189fbbd4729fb65 188833 maqview_0.2.5.orig.tar.gz
52380be6f65ace743db1406353636a654a058da5 16924 maqview_0.2.5-12.debian.tar.xz
Checksums-Sha256:
2d01495bb03fe108d87a348432bdc9c81e93c6f765ccba8f88fc94a979a7eba2 188833 maqview_0.2.5.orig.tar.gz
29a189ff26bcc3e82ca7e04ecda18930cbd3e38265aceb5056e7e4149e1847ac 16924 maqview_0.2.5-12.debian.tar.xz
Files:
050c8c3692b2bdd44bd794f872d2388b 188833 maqview_0.2.5.orig.tar.gz
10682c400b7eb8ed4570b0907cbc408a 16924 maqview_0.2.5-12.debian.tar.xz
Dgit: c0166d335aa70c4c89adc587a4d99c31417a1f55 debian archive/debian/0.2.5-12 https://git.dgit.debian.org/maqview
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Fri Feb 21 05:24:15 UTC 2025 I: Checking whether the package is not for us
Fri Feb 21 05:24:15 UTC 2025 I: Starting 1st build on remote node ionos12-i386.debian.net.
Fri Feb 21 05:24:15 UTC 2025 I: Preparing to do remote build '1' on ionos12-i386.debian.net.
Fri Feb 21 05:25:11 UTC 2025 I: Deleting $TMPDIR on ionos12-i386.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Thu Feb 20 17:24:17 -12 2025
I: pbuilder-time-stamp: 1740115457
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [maqview_0.2.5-12.dsc]
I: copying [./maqview_0.2.5.orig.tar.gz]
I: copying [./maqview_0.2.5-12.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./maqview_0.2.5-12.dsc: unsupported subcommand
dpkg-source: info: extracting maqview in maqview-0.2.5
dpkg-source: info: unpacking maqview_0.2.5.orig.tar.gz
dpkg-source: info: unpacking maqview_0.2.5-12.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix-gcc-4.5.patch
dpkg-source: info: applying gcc-4.7.patch
dpkg-source: info: applying use-dpkg-buildflags.patch
dpkg-source: info: applying fix-hurd-build.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying mayhem.patch
dpkg-source: info: applying gcc-14.patch
dpkg-source: info: applying typo.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/58243/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='i386'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='i386'
IFS='
'
INVOCATION_ID='4711007b013249fe953190059c211a0b'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
LD_LIBRARY_PATH='/usr/lib/libeatmydata'
LD_PRELOAD='libeatmydata.so'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='58243'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RVWtTKBg/pbuilderrc_rsAD --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RVWtTKBg/b1 --logfile b1/build.log maqview_0.2.5-12.dsc'
SUDO_GID='112'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://46.16.76.132:3128'
I: uname -a
Linux ionos12-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/58243/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), freeglut3-dev, libxi-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19795 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on freeglut3-dev; however:
Package freeglut3-dev is not installed.
pbuilder-satisfydepends-dummy depends on libxi-dev; however:
Package libxi-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} freeglut3-dev{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgbm1{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglut-dev{a} libglut3.12{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libice-dev{a} libice6{a} libicu72{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libopengl-dev{a} libopengl0{a} libpciaccess0{a} libpipeline1{a} libsensors-config{a} libsensors5{a} libsm-dev{a} libsm6{a} libtool{a} libuchardet0{a} libunistring5{a} libvulkan1{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxi-dev{a} libxi6{a} libxml2{a} libxshmfence1{a} libxt-dev{a} libxt6t64{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} mesa-libgallium{a} po-debconf{a} sensible-utils{a} uuid-dev{a} x11-common{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx mesa-vulkan-drivers wget
0 packages upgraded, 98 newly installed, 0 to remove and 0 not upgraded.
Need to get 78.1 MB of archives. After unpacking 322 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB]
Get: 2 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB]
Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB]
Get: 4 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB]
Get: 5 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.23.1-1 [245 kB]
Get: 6 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB]
Get: 7 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB]
Get: 8 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-3 [96.2 kB]
Get: 9 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB]
Get: 10 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB]
Get: 11 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-5 [301 kB]
Get: 12 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB]
Get: 13 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian trixie/main i386 automake all 1:1.17-3 [862 kB]
Get: 15 http://deb.debian.org/debian trixie/main i386 autopoint all 0.23.1-1 [770 kB]
Get: 16 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 17 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-3 [539 kB]
Get: 18 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 21 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 22 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB]
Get: 23 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB]
Get: 24 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB]
Get: 25 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB]
Get: 26 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB]
Get: 27 http://deb.debian.org/debian trixie/main i386 gettext i386 0.23.1-1 [1714 kB]
Get: 28 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian trixie/main i386 debhelper all 13.24.1 [920 kB]
Get: 31 http://deb.debian.org/debian trixie/main i386 libglvnd0 i386 1.7.0-1+b2 [44.1 kB]
Get: 32 http://deb.debian.org/debian trixie/main i386 libxau6 i386 1:1.0.11-1 [20.7 kB]
Get: 33 http://deb.debian.org/debian trixie/main i386 libxdmcp6 i386 1:1.1.5-1 [28.2 kB]
Get: 34 http://deb.debian.org/debian trixie/main i386 libxcb1 i386 1.17.0-2+b1 [148 kB]
Get: 35 http://deb.debian.org/debian trixie/main i386 libx11-data all 2:1.8.10-2 [337 kB]
Get: 36 http://deb.debian.org/debian trixie/main i386 libx11-6 i386 2:1.8.10-2 [834 kB]
Get: 37 http://deb.debian.org/debian trixie/main i386 libdrm-common all 2.4.123-1 [8084 B]
Get: 38 http://deb.debian.org/debian trixie/main i386 libdrm2 i386 2.4.123-1 [41.8 kB]
Get: 39 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB]
Get: 40 http://deb.debian.org/debian trixie/main i386 libglapi-mesa i386 24.3.4-3 [38.3 kB]
Get: 41 http://deb.debian.org/debian trixie/main i386 libx11-xcb1 i386 2:1.8.10-2 [241 kB]
Get: 42 http://deb.debian.org/debian trixie/main i386 libxcb-dri3-0 i386 1.17.0-2+b1 [107 kB]
Get: 43 http://deb.debian.org/debian trixie/main i386 libxcb-glx0 i386 1.17.0-2+b1 [124 kB]
Get: 44 http://deb.debian.org/debian trixie/main i386 libxcb-present0 i386 1.17.0-2+b1 [106 kB]
Get: 45 http://deb.debian.org/debian trixie/main i386 libxcb-shm0 i386 1.17.0-2+b1 [105 kB]
Get: 46 http://deb.debian.org/debian trixie/main i386 libxcb-xfixes0 i386 1.17.0-2+b1 [110 kB]
Get: 47 http://deb.debian.org/debian trixie/main i386 libxext6 i386 2:1.3.4-1+b3 [52.5 kB]
Get: 48 http://deb.debian.org/debian trixie/main i386 libxxf86vm1 i386 1:1.1.4-1+b4 [20.1 kB]
Get: 49 http://deb.debian.org/debian trixie/main i386 libdrm-amdgpu1 i386 2.4.123-1 [25.0 kB]
Get: 50 http://deb.debian.org/debian trixie/main i386 libpciaccess0 i386 0.17-3+b3 [53.8 kB]
Get: 51 http://deb.debian.org/debian trixie/main i386 libdrm-intel1 i386 2.4.123-1 [66.8 kB]
Get: 52 http://deb.debian.org/debian trixie/main i386 libdrm-radeon1 i386 2.4.123-1 [23.0 kB]
Get: 53 http://deb.debian.org/debian trixie/main i386 libedit2 i386 3.1-20250104-1 [98.1 kB]
Get: 54 http://deb.debian.org/debian trixie/main i386 libffi8 i386 3.4.7-1 [21.4 kB]
Get: 55 http://deb.debian.org/debian trixie/main i386 libz3-4 i386 4.13.3-1 [9211 kB]
Get: 56 http://deb.debian.org/debian trixie/main i386 libllvm19 i386 1:19.1.7-1+b1 [30.4 MB]
Get: 57 http://deb.debian.org/debian trixie/main i386 libsensors-config all 1:3.6.0-10 [14.6 kB]
Get: 58 http://deb.debian.org/debian trixie/main i386 libsensors5 i386 1:3.6.0-10+b1 [35.8 kB]
Get: 59 http://deb.debian.org/debian trixie/main i386 libxcb-randr0 i386 1.17.0-2+b1 [118 kB]
Get: 60 http://deb.debian.org/debian trixie/main i386 libxcb-sync1 i386 1.17.0-2+b1 [109 kB]
Get: 61 http://deb.debian.org/debian trixie/main i386 libxshmfence1 i386 1.3-1+b3 [9000 B]
Get: 62 http://deb.debian.org/debian trixie/main i386 mesa-libgallium i386 24.3.4-3 [9718 kB]
Get: 63 http://deb.debian.org/debian trixie/main i386 libwayland-server0 i386 1.23.1-1 [35.7 kB]
Get: 64 http://deb.debian.org/debian trixie/main i386 libgbm1 i386 24.3.4-3 [44.8 kB]
Get: 65 http://deb.debian.org/debian trixie/main i386 libvulkan1 i386 1.4.304.0-1 [139 kB]
Get: 66 http://deb.debian.org/debian trixie/main i386 libgl1-mesa-dri i386 24.3.4-3 [43.7 kB]
Get: 67 http://deb.debian.org/debian trixie/main i386 libglx-mesa0 i386 24.3.4-3 [146 kB]
Get: 68 http://deb.debian.org/debian trixie/main i386 libglx0 i386 1.7.0-1+b2 [36.8 kB]
Get: 69 http://deb.debian.org/debian trixie/main i386 libgl1 i386 1.7.0-1+b2 [82.7 kB]
Get: 70 http://deb.debian.org/debian trixie/main i386 libxi6 i386 2:1.8.2-1 [81.2 kB]
Get: 71 http://deb.debian.org/debian trixie/main i386 libglut3.12 i386 3.4.0-4 [139 kB]
Get: 72 http://deb.debian.org/debian trixie/main i386 libopengl0 i386 1.7.0-1+b2 [29.3 kB]
Get: 73 http://deb.debian.org/debian trixie/main i386 libglu1-mesa i386 9.0.2-1.1+b3 [190 kB]
Get: 74 http://deb.debian.org/debian trixie/main i386 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get: 75 http://deb.debian.org/debian trixie/main i386 x11proto-dev all 2024.1-1 [603 kB]
Get: 76 http://deb.debian.org/debian trixie/main i386 libxau-dev i386 1:1.0.11-1 [24.0 kB]
Get: 77 http://deb.debian.org/debian trixie/main i386 libxdmcp-dev i386 1:1.1.5-1 [45.0 kB]
Get: 78 http://deb.debian.org/debian trixie/main i386 xtrans-dev all 1.4.0-1 [98.7 kB]
Get: 79 http://deb.debian.org/debian trixie/main i386 libxcb1-dev i386 1.17.0-2+b1 [186 kB]
Get: 80 http://deb.debian.org/debian trixie/main i386 libx11-dev i386 2:1.8.10-2 [917 kB]
Get: 81 http://deb.debian.org/debian trixie/main i386 libglx-dev i386 1.7.0-1+b2 [15.8 kB]
Get: 82 http://deb.debian.org/debian trixie/main i386 libgl-dev i386 1.7.0-1+b2 [101 kB]
Get: 83 http://deb.debian.org/debian trixie/main i386 libopengl-dev i386 1.7.0-1+b2 [5384 B]
Get: 84 http://deb.debian.org/debian trixie/main i386 libglu1-mesa-dev i386 9.0.2-1.1+b3 [234 kB]
Get: 85 http://deb.debian.org/debian trixie/main i386 libxext-dev i386 2:1.3.4-1+b3 [108 kB]
Get: 86 http://deb.debian.org/debian trixie/main i386 x11-common all 1:7.7+24 [217 kB]
Get: 87 http://deb.debian.org/debian trixie/main i386 libice6 i386 2:1.1.1-1 [67.8 kB]
Get: 88 http://deb.debian.org/debian trixie/main i386 libsm6 i386 2:1.2.4-1 [35.9 kB]
Get: 89 http://deb.debian.org/debian trixie/main i386 libxt6t64 i386 1:1.2.1-1.2+b2 [194 kB]
Get: 90 http://deb.debian.org/debian trixie/main i386 libice-dev i386 2:1.1.1-1 [77.6 kB]
Get: 91 http://deb.debian.org/debian trixie/main i386 uuid-dev i386 2.40.4-3 [47.9 kB]
Get: 92 http://deb.debian.org/debian trixie/main i386 libsm-dev i386 2:1.2.4-1 [39.1 kB]
Get: 93 http://deb.debian.org/debian trixie/main i386 libxt-dev i386 1:1.2.1-1.2+b2 [420 kB]
Get: 94 http://deb.debian.org/debian trixie/main i386 libglut-dev i386 3.4.0-4 [168 kB]
Get: 95 http://deb.debian.org/debian trixie/main i386 freeglut3-dev i386 3.4.0-4 [53.4 kB]
Get: 96 http://deb.debian.org/debian trixie/main i386 libxfixes3 i386 1:6.0.0-2+b4 [20.7 kB]
Get: 97 http://deb.debian.org/debian trixie/main i386 libxfixes-dev i386 1:6.0.0-2+b4 [22.9 kB]
Get: 98 http://deb.debian.org/debian trixie/main i386 libxi-dev i386 2:1.8.2-1 [244 kB]
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invoke-rc.d: could not determine current runlevel
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-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/maqview-0.2.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../maqview_0.2.5-12_source.changes
dpkg-buildpackage: info: source package maqview
dpkg-buildpackage: info: source version 0.2.5-12
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/maqview-0.2.5'
[ ! -f Makefile ] || /usr/bin/make distclean
dh_auto_clean
rm -f *.1
make[1]: Leaving directory '/build/reproducible-path/maqview-0.2.5'
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
debian/rules override_dh_autoreconf
make[1]: Entering directory '/build/reproducible-path/maqview-0.2.5'
dh_autoreconf --as-needed
configure.ac:2: warning: 'AM_CONFIG_HEADER': this macro is obsolete.
configure.ac:2: You should use the 'AC_CONFIG_HEADERS' macro instead.
aclocal.m4:707: AM_CONFIG_HEADER is expanded from...
configure.ac:2: the top level
configure.ac:9: warning: The macro 'AC_STDC_HEADERS' is obsolete.
configure.ac:9: You should run autoupdate.
./lib/autoconf/oldnames.m4:75: AC_STDC_HEADERS is expanded from...
configure.ac:9: the top level
configure.ac:9: warning: The macro 'AC_HEADER_STDC' is obsolete.
configure.ac:9: You should run autoupdate.
./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from...
./lib/autoconf/oldnames.m4:75: AC_STDC_HEADERS is expanded from...
configure.ac:9: the top level
configure.ac:6: installing './compile'
configure.ac:5: installing './config.guess'
configure.ac:5: installing './config.sub'
configure.ac:3: installing './install-sh'
configure.ac:3: installing './missing'
Makefile.am: installing './depcomp'
make -f Makefile.generic maqview.1
make[2]: Entering directory '/build/reproducible-path/maqview-0.2.5'
pod2man --center "Bioinformatics Tools" --release "maqview-0.2.4" maqview.pod > maqview.1
make[2]: Leaving directory '/build/reproducible-path/maqview-0.2.5'
### The *.class files in the source package can be reproduced by simply running
# javac MaqDataClient.java
### however, it is unclear whether this code is used at all
make[1]: Leaving directory '/build/reproducible-path/maqview-0.2.5'
dh_auto_configure
./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking
checking for a BSD-compatible install... /usr/bin/install -c
checking whether sleep supports fractional seconds... yes
checking filesystem timestamp resolution... 0.01
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking xargs -n works... yes
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
checking for g++... g++
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking dependency style of g++... none
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
configure: WARNING: Library libglut will be statically linked.
checking for GL/glut.h... yes
checking for glutMouseWheelFunc in -lglut... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
config.status: executing depfiles commands
dh_auto_build
make -j11
make[1]: Entering directory '/build/reproducible-path/maqview-0.2.5'
make all-am
make[2]: Entering directory '/build/reproducible-path/maqview-0.2.5'
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o zrio_main.o zrio_main.c
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o btree.o btree.c
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o maqmap_index.o maqmap_index.c
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o zrio.o zrio.c
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -c -o stdhashc.o stdhashc.cc
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o cns_cache.o cns_cache.c
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o const.o const.c
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o adler32.o adler32.c
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o compress.o compress.c
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o crc32.o crc32.c
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o deflate.o deflate.c
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o gzio.o gzio.c
btree.c: In function 'btree_append':
btree.c:39:92: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' {aka 'long long int'} [-Wformat=]
39 | fprintf(stderr, "** Value appended to BTree was not sorted(ASC), ignored %ld (%ld) at %s:%d\n", value, node->right, __FILE__, __LINE__);
| ~~^ ~~~~~
| | |
| long int int64_t {aka long long int}
| %lld
btree.c:39:97: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int64_t' {aka 'long long int'} [-Wformat=]
39 | fprintf(stderr, "** Value appended to BTree was not sorted(ASC), ignored %ld (%ld) at %s:%d\n", value, node->right, __FILE__, __LINE__);
| ~~^ ~~~~~~~~~~~
| | |
| long int int64_t {aka long long int}
| %lld
maqmap_index.c: In function 'notify':
maqmap_index.c:43:69: warning: unused parameter 'pos' [-Wunused-parameter]
43 | void notify(void *object, unsigned char *buf, int buf_size, int64_t pos){
| ~~~~~~~~^~~
cns_cache.c: In function 'make_cns_index':
cns_cache.c:150:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' {aka 'long long int'} [-Wformat=]
150 | fprintf(file, "REF_LENGTH:%ld\n", cache->ref_lengths[i]);
| ~~^ ~~~~~~~~~~~~~~~~~~~~~
| | |
| long int int64_t {aka long long int}
| %lld
btree.c: In function 'btree_load':
cns_cache.c:151:45: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' {aka 'long long int'} [-Wformat=]
151 | fprintf(file, "REF_OFFSET:%ld\n", cache->ref_offsets[i]);
| ~~^ ~~~~~~~~~~~~~~~~~~~~~
| | |
| long int int64_t {aka long long int}
| %lld
btree.c:284:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
284 | fread(&ch, 1, 1, in);
| ^~~~~~~~~~~~~~~~~~~~
btree.c:295:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
295 | fread(&tree->left, sizeof(int64_t), 1, in);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
btree.c:296:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
296 | fread(&tree->right, sizeof(int64_t), 1, in);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
btree.c:297:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
297 | fread(tree->indexs, sizeof(int64_t), 2, in);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cns_cache.c: In function 'open_cns_cache':
maqmap_index.c: In function 'read_map_next_to':
btree.c:298:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
298 | fread(&tree->size, sizeof(int), 1, in);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cns_cache.c:204:44: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'int64_t *' {aka 'long long int *'} [-Wformat=]
204 | fscanf(file, "REF_LENGTH:%ld\n", cns->ref_lengths + i);
| ~~^ ~~~~~~~~~~~~~~~~~~~~
| | |
| long int * int64_t * {aka long long int *}
| %lld
maqmap_index.c:403:36: warning: comparison of integer expressions of different signedness: 'bit32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
403 | if(let[size].seqid != ref_id) break;
| ^~
cns_cache.c:205:44: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'int64_t *' {aka 'long long int *'} [-Wformat=]
205 | fscanf(file, "REF_OFFSET:%ld\n", cns->ref_offsets + i);
| ~~^ ~~~~~~~~~~~~~~~~~~~~
| | |
| long int * int64_t * {aka long long int *}
| %lld
maqmap_index.c: In function 'num2str':
maqmap_index.c:418:28: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' {aka 'long long int'} [-Wformat=]
418 | sprintf(string, "%ld", number);
| ~~^ ~~~~~~
| | |
| | int64_t {aka long long int}
| long int
| %lld
zrio_main.c: In function 'main':
zrio_main.c:46:68: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' {aka 'long long int'} [-Wformat=]
46 | fprintf(stderr, "Cannot seek to position %ld\n", offset);
| ~~^ ~~~~~~
| | |
| | int64_t {aka long long int}
| long int
| %lld
maqmap_index.c: In function 'notify':
maqmap_index.c:60:46: warning: this statement may fall through [-Wimplicit-fallthrough=]
60 | obj->heading = 2;
| ~~~~~~~~~~~~~^~~
maqmap_index.c:61:25: note: here
61 | case 2:
| ^~~~
maqmap_index.c:68:46: warning: this statement may fall through [-Wimplicit-fallthrough=]
68 | obj->heading = 3;
| ~~~~~~~~~~~~~^~~
maqmap_index.c:69:25: note: here
69 | case 3:
| ^~~~
cns_cache.c: In function 'cns_cache_guess':
maqmap_index.c:78:46: warning: this statement may fall through [-Wimplicit-fallthrough=]
78 | obj->heading = 4;
| ~~~~~~~~~~~~~^~~
maqmap_index.c:79:25: note: here
79 | case 4:
| ^~~~
cns_cache.c:392:61: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'unsigned int' [-Wformat=]
392 | fprintf(stderr, "Maqview ** Out of memory %ld M **\n", sizeof(int) * cns->size * 4 / (1024 * 1024));
| ~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| | |
| long int unsigned int
| %d
cns_cache.c:393:53: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' {aka 'long long int'} [-Wformat=]
393 | fprintf(stderr, "Maqview ** cache %ld - %ld **\n", cache->start, cache->end);
| ~~^ ~~~~~~~~~~~~
| | |
| long int int64_t {aka long long int}
| %lld
cns_cache.c:393:59: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int64_t' {aka 'long long int'} [-Wformat=]
393 | fprintf(stderr, "Maqview ** cache %ld - %ld **\n", cache->start, cache->end);
| ~~^ ~~~~~~~~~~
| | |
| long int int64_t {aka long long int}
| %lld
cns_cache.c: In function 'cns_notify':
cns_cache.c:97:38: warning: this statement may fall through [-Wimplicit-fallthrough=]
97 | obj->heading = 2;
| ~~~~~~~~~~~~~^~~
cns_cache.c:98:17: note: here
98 | case 2:
| ^~~~
cns_cache.c:101:38: warning: this statement may fall through [-Wimplicit-fallthrough=]
101 | obj->heading = 3;
| ~~~~~~~~~~~~~^~~
cns_cache.c:102:17: note: here
102 | case 3:
| ^~~~
cns_cache.c: In function 'open_cns_cache':
cns_cache.c:193:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
193 | fscanf(file, "N_REF: %d\n", &cns->n_ref);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cns_cache.c:203:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
203 | fscanf(file, "REF_NAME:%s\n", cns->ref_name[i]);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cns_cache.c:204:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
204 | fscanf(file, "REF_LENGTH:%ld\n", cns->ref_lengths + i);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cns_cache.c:205:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
205 | fscanf(file, "REF_OFFSET:%ld\n", cns->ref_offsets + i);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
zrio.c: In function 'set_z_pos':
zrio.c:140:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
140 | if (ret != Z_OK)
| ^~
zrio.c:142:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
142 | if(here->bits){
| ^~
zrio.c: In function 'get_max_dist':
zrio.c:437:40: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
437 | for(i=state->dist_window_tail;i<state->dmax;i++){
| ^
zrio.c: In function 'build_index':
zrio.c:466:31: warning: variable 'state' set but not used [-Wunused-but-set-variable]
466 | struct inflate_state *state;
| ^~~~~
zrio.c: In function 'load_access':
zrio.c:351:33: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
351 | #define my_read(file, buf, len) fread(buf, 1, len, file)
| ^~~~~~~~~~~~~~~~~~~~~~~~
zrio.c:356:9: note: in expansion of macro 'my_read'
356 | my_read(in, &size, sizeof(int));
| ^~~~~~~
zrio.c:351:33: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
351 | #define my_read(file, buf, len) fread(buf, 1, len, file)
| ^~~~~~~~~~~~~~~~~~~~~~~~
zrio.c:364:17: note: in expansion of macro 'my_read'
364 | my_read(in, &(p->out), sizeof(int64_t));
| ^~~~~~~
zrio.c:351:33: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
351 | #define my_read(file, buf, len) fread(buf, 1, len, file)
| ^~~~~~~~~~~~~~~~~~~~~~~~
zrio.c:365:17: note: in expansion of macro 'my_read'
365 | my_read(in, &(p->in), sizeof(int64_t));
| ^~~~~~~
zrio.c:351:33: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
351 | #define my_read(file, buf, len) fread(buf, 1, len, file)
| ^~~~~~~~~~~~~~~~~~~~~~~~
zrio.c:366:17: note: in expansion of macro 'my_read'
366 | my_read(in, &(p->bits), sizeof(int));
| ^~~~~~~
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o inffast.o inffast.c
inffast.c: In function 'inflate_fast_zr':
inffast.c:320:67: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
320 | #define append_dist_window(state, val) if(state->dist_window_tail >= state->dmax) state->dist_window_tail = 0;\
| ^~
inffast.c:394:25: note: in expansion of macro 'append_dist_window'
394 | append_dist_window(state, 0);
| ^~~~~~~~~~~~~~~~~~
inffast.c:320:67: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
320 | #define append_dist_window(state, val) if(state->dist_window_tail >= state->dmax) state->dist_window_tail = 0;\
| ^~
inffast.c:469:65: note: in expansion of macro 'append_dist_window'
469 | append_dist_window(state, dist);
| ^~~~~~~~~~~~~~~~~~
inffast.c:320:67: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
320 | #define append_dist_window(state, val) if(state->dist_window_tail >= state->dmax) state->dist_window_tail = 0;\
| ^~
inffast.c:477:73: note: in expansion of macro 'append_dist_window'
477 | append_dist_window(state, dist);
| ^~~~~~~~~~~~~~~~~~
inffast.c:320:67: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
320 | #define append_dist_window(state, val) if(state->dist_window_tail >= state->dmax) state->dist_window_tail = 0;\
| ^~
inffast.c:489:65: note: in expansion of macro 'append_dist_window'
489 | append_dist_window(state, dist);
| ^~~~~~~~~~~~~~~~~~
inffast.c:320:67: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
320 | #define append_dist_window(state, val) if(state->dist_window_tail >= state->dmax) state->dist_window_tail = 0;\
| ^~
inffast.c:496:49: note: in expansion of macro 'append_dist_window'
496 | append_dist_window(state, dist);
| ^~~~~~~~~~~~~~~~~~
inffast.c:320:67: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
320 | #define append_dist_window(state, val) if(state->dist_window_tail >= state->dmax) state->dist_window_tail = 0;\
| ^~
inffast.c:498:49: note: in expansion of macro 'append_dist_window'
498 | append_dist_window(state, dist);
| ^~~~~~~~~~~~~~~~~~
inffast.c:320:67: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
320 | #define append_dist_window(state, val) if(state->dist_window_tail >= state->dmax) state->dist_window_tail = 0;\
| ^~
inffast.c:500:49: note: in expansion of macro 'append_dist_window'
500 | append_dist_window(state, dist);
| ^~~~~~~~~~~~~~~~~~
inffast.c:320:67: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
320 | #define append_dist_window(state, val) if(state->dist_window_tail >= state->dmax) state->dist_window_tail = 0;\
| ^~
inffast.c:505:49: note: in expansion of macro 'append_dist_window'
505 | append_dist_window(state, dist);
| ^~~~~~~~~~~~~~~~~~
inffast.c:320:67: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
320 | #define append_dist_window(state, val) if(state->dist_window_tail >= state->dmax) state->dist_window_tail = 0;\
| ^~
inffast.c:508:57: note: in expansion of macro 'append_dist_window'
508 | append_dist_window(state, dist);
| ^~~~~~~~~~~~~~~~~~
inffast.c:320:67: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
320 | #define append_dist_window(state, val) if(state->dist_window_tail >= state->dmax) state->dist_window_tail = 0;\
| ^~
inffast.c:516:49: note: in expansion of macro 'append_dist_window'
516 | append_dist_window(state, dist);
| ^~~~~~~~~~~~~~~~~~
inffast.c:320:67: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
320 | #define append_dist_window(state, val) if(state->dist_window_tail >= state->dmax) state->dist_window_tail = 0;\
| ^~
inffast.c:518:49: note: in expansion of macro 'append_dist_window'
518 | append_dist_window(state, dist);
| ^~~~~~~~~~~~~~~~~~
inffast.c:320:67: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
320 | #define append_dist_window(state, val) if(state->dist_window_tail >= state->dmax) state->dist_window_tail = 0;\
| ^~
inffast.c:520:49: note: in expansion of macro 'append_dist_window'
520 | append_dist_window(state, dist);
| ^~~~~~~~~~~~~~~~~~
inffast.c:320:67: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
320 | #define append_dist_window(state, val) if(state->dist_window_tail >= state->dmax) state->dist_window_tail = 0;\
| ^~
inffast.c:525:49: note: in expansion of macro 'append_dist_window'
525 | append_dist_window(state, dist);
| ^~~~~~~~~~~~~~~~~~
inffast.c:320:67: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
320 | #define append_dist_window(state, val) if(state->dist_window_tail >= state->dmax) state->dist_window_tail = 0;\
| ^~
inffast.c:528:57: note: in expansion of macro 'append_dist_window'
528 | append_dist_window(state, dist);
| ^~~~~~~~~~~~~~~~~~
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o inflate.o inflate.c
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o infback.o infback.c
infback.c: In function 'inflateBack':
infback.c:462:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
462 | state->mode = LEN;
| ~~~~~~~~~~~~^~~~~
infback.c:464:9: note: here
464 | case LEN:
| ^~~~
inflate.c: In function 'inflate':
inflate.c:676:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
676 | state->mode = EXLEN;
| ~~~~~~~~~~~~^~~~~~~
inflate.c:677:9: note: here
677 | case EXLEN:
| ^~~~
inflate.c:688:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
688 | state->mode = EXTRA;
| ~~~~~~~~~~~~^~~~~~~
inflate.c:689:9: note: here
689 | case EXTRA:
| ^~~~
inflate.c:710:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
710 | state->mode = NAME;
| ~~~~~~~~~~~~^~~~~~
inflate.c:711:9: note: here
711 | case NAME:
| ^~~~
inflate.c:731:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
731 | state->mode = COMMENT;
| ~~~~~~~~~~~~^~~~~~~~~
inflate.c:732:9: note: here
732 | case COMMENT:
| ^~~~
inflate.c:751:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
751 | state->mode = HCRC;
| ~~~~~~~~~~~~^~~~~~
inflate.c:752:9: note: here
752 | case HCRC:
| ^~~~
inflate.c:774:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
774 | state->mode = DICT;
| ~~~~~~~~~~~~^~~~~~
inflate.c:775:9: note: here
775 | case DICT:
| ^~~~
inflate.c:781:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
781 | state->mode = TYPE;
| ~~~~~~~~~~~~^~~~~~
inflate.c:782:9: note: here
782 | case TYPE:
| ^~~~
inflate.c:783:16: warning: this statement may fall through [-Wimplicit-fallthrough=]
783 | if (flush == Z_BLOCK) goto inf_leave;
| ^
inflate.c:784:9: note: here
784 | case TYPEDO:
| ^~~~
inflate.c:828:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
828 | state->mode = COPY;
| ~~~~~~~~~~~~^~~~~~
inflate.c:829:9: note: here
829 | case COPY:
| ^~~~
inflate.c:958:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
958 | state->mode = LEN;
| ~~~~~~~~~~~~^~~~~
inflate.c:959:9: note: here
959 | case LEN:
| ^~~~
inflate.c:1001:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
1001 | state->mode = LENEXT;
| ~~~~~~~~~~~~^~~~~~~~
inflate.c:1002:9: note: here
1002 | case LENEXT:
| ^~~~
inflate.c:1009:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
1009 | state->mode = DIST;
| ~~~~~~~~~~~~^~~~~~
inflate.c:1010:9: note: here
1010 | case DIST:
| ^~~~
inflate.c:1034:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
1034 | state->mode = DISTEXT;
| ~~~~~~~~~~~~^~~~~~~~~
inflate.c:1035:9: note: here
1035 | case DISTEXT:
| ^~~~
inflate.c:1054:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
1054 | state->mode = MATCH;
| ~~~~~~~~~~~~^~~~~~~
inflate.c:1055:9: note: here
1055 | case MATCH:
| ^~~~
inflate.c:1109:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
1109 | state->mode = LENGTH;
| ~~~~~~~~~~~~^~~~~~~~
inflate.c:1110:9: note: here
1110 | case LENGTH:
| ^~~~
inflate.c:1122:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
1122 | state->mode = DONE;
| ~~~~~~~~~~~~^~~~~~
inflate.c:1123:9: note: here
1123 | case DONE:
| ^~~~
inflate.c: In function 'inflate_zr':
inflate.c:1281:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
1281 | state->mode = EXLEN;
| ~~~~~~~~~~~~^~~~~~~
inflate.c:1282:9: note: here
1282 | case EXLEN:
| ^~~~
inflate.c:1293:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
1293 | state->mode = EXTRA;
| ~~~~~~~~~~~~^~~~~~~
inflate.c:1294:9: note: here
1294 | case EXTRA:
| ^~~~
inflate.c:1315:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
1315 | state->mode = NAME;
| ~~~~~~~~~~~~^~~~~~
inflate.c:1316:9: note: here
1316 | case NAME:
| ^~~~
inflate.c:1336:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
1336 | state->mode = COMMENT;
| ~~~~~~~~~~~~^~~~~~~~~
inflate.c:1337:9: note: here
1337 | case COMMENT:
| ^~~~
inflate.c:1356:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
1356 | state->mode = HCRC;
| ~~~~~~~~~~~~^~~~~~
inflate.c:1357:9: note: here
1357 | case HCRC:
| ^~~~
inflate.c:1379:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
1379 | state->mode = DICT;
| ~~~~~~~~~~~~^~~~~~
inflate.c:1380:9: note: here
1380 | case DICT:
| ^~~~
inflate.c:1386:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
1386 | state->mode = TYPE;
| ~~~~~~~~~~~~^~~~~~
inflate.c:1387:9: note: here
1387 | case TYPE:
| ^~~~
inflate.c:1388:16: warning: this statement may fall through [-Wimplicit-fallthrough=]
1388 | if (flush == Z_BLOCK) goto inf_leave;
| ^
inflate.c:1389:9: note: here
1389 | case TYPEDO:
| ^~~~
inflate.c:1433:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
1433 | state->mode = COPY;
| ~~~~~~~~~~~~^~~~~~
inflate.c:1434:9: note: here
1434 | case COPY:
| ^~~~
inflate.c:1563:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
1563 | state->mode = LEN;
| ~~~~~~~~~~~~^~~~~
inflate.c:1564:9: note: here
1564 | case LEN:
| ^~~~
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o inftrees.o inftrees.c
inflate.c:1606:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
1606 | state->mode = LENEXT;
| ~~~~~~~~~~~~^~~~~~~~
inflate.c:1607:9: note: here
1607 | case LENEXT:
| ^~~~
inflate.c:1614:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
1614 | state->mode = DIST;
| ~~~~~~~~~~~~^~~~~~
inflate.c:1615:9: note: here
1615 | case DIST:
| ^~~~
inflate.c:1639:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
1639 | state->mode = DISTEXT;
| ~~~~~~~~~~~~^~~~~~~~~
inflate.c:1640:9: note: here
1640 | case DISTEXT:
| ^~~~
inflate.c:1659:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
1659 | state->mode = MATCH;
| ~~~~~~~~~~~~^~~~~~~
inflate.c:1660:9: note: here
1660 | case MATCH:
| ^~~~
inflate.c:1714:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
1714 | state->mode = LENGTH;
| ~~~~~~~~~~~~^~~~~~~~
inflate.c:1715:9: note: here
1715 | case LENGTH:
| ^~~~
inflate.c:1727:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
1727 | state->mode = DONE;
| ~~~~~~~~~~~~^~~~~~
inflate.c:1728:9: note: here
1728 | case DONE:
| ^~~~
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o trees.o trees.c
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o uncompr.o uncompr.c
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o zutil.o zutil.c
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o maqmap_index_main.o maqmap_index_main.c
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o read_cache.o read_cache.c
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o view_goto.o view_goto.c
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o view_panel.o view_panel.c
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o gl_gui.o gl_gui.c
maqmap_index_main.c: In function 'dump_map':
maqmap_index_main.c:67:27: warning: unused parameter 'obj' [-Wunused-parameter]
67 | static int dump_map(void *obj, maplet *m1)
| ~~~~~~^~~
In file included from maqmap_index_main.c:4:
maqmap_index_main.c: In function 'main':
maqmap_index_main.c:133:32: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
133 | assert(mi = make_map_index(argv[optind], level));
| ^~
maqmap_index_main.c:139:32: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
139 | assert(cns = make_cns_index(cns_name, level));
| ^~~
maqmap_index_main.c:166:55: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' {aka 'long long int'} [-Wformat=]
166 | printf("%s\t%ld\t%c\t%c\t%d\t%d\t%.2f\t%d\t%d\n", cns->ref_name[ref_id], j+cns->start+1,
| ~~^ ~~~~~~~~~~~~~~
| | |
| long int int64_t {aka long long int}
| %lld
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o MainFrame.o MainFrame.c
gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -D_FILE_OFFSET_BITS=64 -DHAVE_FREEGLUT -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Wall -W -DMAQ_LONGREADS -c -o socket_view.o socket_view.c
view_goto.c: In function 'view_resize':
view_goto.c:192:41: warning: unused parameter 'h' [-Wunused-parameter]
192 | void view_resize(View *view, int w, int h){
| ~~~~^
view_panel.c: In function 'drawRefSeq_sq':
view_panel.c:497:41: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' {aka 'long long int'} [-Wformat=]
497 | sprintf(str, "%ld[%c]", i + refs->show_start + 1, ch);
| ~~^ ~~~~~~~~~~~~~~~~~~~~~~~~
| | |
| long int int64_t {aka long long int}
| %lld
view_panel.c: In function 'drawRefSeq_li':
view_panel.c:538:41: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' {aka 'long long int'} [-Wformat=]
538 | sprintf(str, "%ld[%c]", i + refs->show_start + 1, ch);
| ~~^ ~~~~~~~~~~~~~~~~~~~~~~~~
| | |
| long int int64_t {aka long long int}
| %lld
view_panel.c: In function 'default_paintStatusBar':
view_panel.c:884:61: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int64_t' {aka 'long long int'} [-Wformat=]
884 | sprintf(vp->msg_string, "Ref[%s] Position[%ld-%ld] Caching[%ld-%ld] Cacheing seqs[%ld-%ld]",
| ~~^
| |
| long int
| %lld
885 | vp->view->refs.cache->index->mm->ref_name[vp->view->refs.show_id],
886 | vp->view->refs.show_start + 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| int64_t {aka long long int}
view_panel.c:884:65: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'long long int' [-Wformat=]
884 | sprintf(vp->msg_string, "Ref[%s] Position[%ld-%ld] Caching[%ld-%ld] Cacheing seqs[%ld-%ld]",
| ~~^
| |
| long int
| %lld
......
887 | vp->view->refs.show_start + (int64_t)vp->view->ch_width + 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| long long int
view_panel.c:884:78: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'int64_t' {aka 'long long int'} [-Wformat=]
884 | sprintf(vp->msg_string, "Ref[%s] Position[%ld-%ld] Caching[%ld-%ld] Cacheing seqs[%ld-%ld]",
| ~~^
| |
| long int
| %lld
......
888 | vp->view->refs.cache->start + 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| int64_t {aka long long int}
gl_gui.c: In function 'GList_mouse':
gl_gui.c:127:45: warning: unused parameter 'x' [-Wunused-parameter]
127 | void GList_mouse(int button, int state, int x, int y){
| ~~~~^
view_panel.c:884:82: warning: format '%ld' expects argument of type 'long int', but argument 7 has type 'int64_t' {aka 'long long int'} [-Wformat=]
884 | sprintf(vp->msg_string, "Ref[%s] Position[%ld-%ld] Caching[%ld-%ld] Cacheing seqs[%ld-%ld]",
| ~~^
| |
| long int
| %lld
......
889 | vp->view->refs.cache->end + 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| int64_t {aka long long int}
view_panel.c:884:101: warning: format '%ld' expects argument of type 'long int', but argument 8 has type 'int64_t' {aka 'long long int'} [-Wformat=]
884 | sprintf(vp->msg_string, "Ref[%s] Position[%ld-%ld] Caching[%ld-%ld] Cacheing seqs[%ld-%ld]",
| ~~^
| |
| long int
| %lld
......
890 | vp->view->refs.cns->start + 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| int64_t {aka long long int}
view_panel.c:884:105: warning: format '%ld' expects argument of type 'long int', but argument 9 has type 'int64_t' {aka 'long long int'} [-Wformat=]
884 | sprintf(vp->msg_string, "Ref[%s] Position[%ld-%ld] Caching[%ld-%ld] Cacheing seqs[%ld-%ld]",
| ~~^
| |
| long int
| %lld
......
891 | vp->view->refs.cns->end + 1
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| int64_t {aka long long int}
view_panel.c: In function 'default_pick':
view_panel.c:1004:34: warning: comparison of integer expressions of different signedness: 'int' and 'GLuint' {aka 'unsigned int'} [-Wsign-compare]
1004 | for(j=1;j<selectBuf[count];j++){
| ^
view_panel.c:1005:39: warning: comparison of integer expressions of different signedness: 'int' and 'GLuint' {aka 'unsigned int'} [-Wsign-compare]
1005 | if(id < selectBuf[count + 3 + j]) id = selectBuf[count + 3 + j];
| ^
view_panel.c: In function 'handle_mouse_over':
view_panel.c:1120:61: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int64_t' {aka 'long long int'} [-Wformat=]
1120 | sprintf(vp->err_string, "Refs[%s] %ld", refs->cache->index->mm->ref_name[refs->show_id], refs->show_start + id + 1);
| ~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~
| | |
| long int int64_t {aka long long int}
| %lld
view_panel.c:1132:74: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'long long int' [-Wformat=]
1132 | sprintf(vp->err_string, "Read: %ld|%c|%s[%d]|%c %d", read_pos(read->read.pos) + 1,
| ~~^
| |
| long int
| %lld
view_panel.c:1136:74: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'long long int' [-Wformat=]
1136 | sprintf(vp->err_string, "Read: %ld|%c|%s", read_pos(read->read.pos) + 1,
| ~~^
| |
| long int
| %lld
view_panel.c:1109:21: warning: variable 'nav' set but not used [-Wunused-but-set-variable]
1109 | Navigation *nav;
| ^~~
view_panel.c: In function 'default_mouseReleased':
view_panel.c:1176:59: warning: unused parameter 'x' [-Wunused-parameter]
1176 | void default_mouseReleased(ViewPanel *vp, int button, int x, int y){
| ~~~~^
view_panel.c:1176:66: warning: unused parameter 'y' [-Wunused-parameter]
1176 | void default_mouseReleased(ViewPanel *vp, int button, int x, int y){
| ~~~~^
view_panel.c: In function 'default_mouseWheel':
view_panel.c:1236:44: warning: unused parameter 'wheel' [-Wunused-parameter]
1236 | void default_mouseWheel(ViewPanel *vp, int wheel, int direction, int x, int y){
| ~~~~^~~~~
view_panel.c:1236:70: warning: unused parameter 'x' [-Wunused-parameter]
1236 | void default_mouseWheel(ViewPanel *vp, int wheel, int direction, int x, int y){
| ~~~~^
view_panel.c:1236:77: warning: unused parameter 'y' [-Wunused-parameter]
1236 | void default_mouseWheel(ViewPanel *vp, int wheel, int direction, int x, int y){
| ~~~~^
view_panel.c: In function 'default_keyTyped':
view_panel.c:1336:58: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int64_t' {aka 'long long int'} [-Wformat=]
1336 | sprintf(vp->err_string, "goto: %ld", vp->view_number);
| ~~^ ~~~~~~~~~~~~~~~
| | |
| | int64_t {aka long long int}
| long int
| %lld
view_panel.c:1250:61: warning: unused parameter 'x' [-Wunused-parameter]
1250 | void default_keyTyped(ViewPanel *vp, unsigned char key, int x, int y){
| ~~~~^
view_panel.c:1250:68: warning: unused parameter 'y' [-Wunused-parameter]
1250 | void default_keyTyped(ViewPanel *vp, unsigned char key, int x, int y){
| ~~~~^
view_panel.c: In function 'synchronize':
view_panel.c:143:27: warning: this statement may fall through [-Wimplicit-fallthrough=]
143 | if(view->refs.show_id != vp->view->refs.show_id){
| ^
view_panel.c:149:17: note: here
149 | case VIEW_EVENT_MOVE:
| ^~~~
MainFrame.c: In function 'main':
MainFrame.c:184:16: warning: variable 'h' set but not used [-Wunused-but-set-variable]
184 | int w, h, c;
| ^
MainFrame.c:184:13: warning: variable 'w' set but not used [-Wunused-but-set-variable]
184 | int w, h, c;
| ^
view_panel.c: In function 'default_keyTyped':
view_panel.c:1507:25: warning: this statement may fall through [-Wimplicit-fallthrough=]
1507 | glutPostRedisplay();
| ^~~~~~~~~~~~~~~~~~~
view_panel.c:1508:13: note: here
1508 | case 8:
| ^~~~
socket_view.c: In function 'custom_socket':
socket_view.c:4:18: warning: variable 'no' set but not used [-Wunused-but-set-variable]
4 | int yes, no;
| ^~
socket_view.c: In function 'read_full':
socket_view.c:20:34: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
20 | if(count == size) break;
| ^~
socket_view.c: In function 'send_maq_data':
socket_view.c:27:70: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'int'} and 'unsigned int' [-Wsign-compare]
27 | #define my_write_full(fds, buffer, size) if(write(fds, buffer, size) != size) return -1
| ^~
socket_view.c:108:17: note: in expansion of macro 'my_write_full'
108 | my_write_full(sock, refs->cache->reads + refs->cache->offset + s, sizeof(Read) * size);
| ^~~~~~~~~~~~~
socket_view.c:27:70: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'int'} and 'unsigned int' [-Wsign-compare]
27 | #define my_write_full(fds, buffer, size) if(write(fds, buffer, size) != size) return -1
| ^~
socket_view.c:112:17: note: in expansion of macro 'my_write_full'
112 | my_write_full(sock, refs->cns->seqs + refs->cns->offset + m, sizeof(cns_t) * (size));
| ^~~~~~~~~~~~~
socket_view.c: In function 'recv_maq_data':
socket_view.c:51:74: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
51 | #define my_read_full2(fds, buffer, size) if(read_full(fds, buffer, size) != size) return -1
| ^~
socket_view.c:133:27: note: in expansion of macro 'my_read_full2'
133 | if(info->rd_size) my_read_full2(sock, info->reads, sizeof(Read) * info->rd_size);
| ^~~~~~~~~~~~~
socket_view.c:51:74: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
51 | #define my_read_full2(fds, buffer, size) if(read_full(fds, buffer, size) != size) return -1
| ^~
socket_view.c:139:28: note: in expansion of macro 'my_read_full2'
139 | if(info->cns_size) my_read_full2(sock, info->seqs, sizeof(cns_t) * info->cns_size);
| ^~~~~~~~~~~~~
socket_view.c: In function 'service_core':
socket_view.c:260:72: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int64_t' {aka 'long long int'} [-Wformat=]
260 | fprintf(stderr, " -- Server fetch %d %ld %ld in %s -- %s:%d --\n", ref_id, start, end, __FUNCTION__, __FILE__, __LINE__);
| ~~^ ~~~~~
| | |
| long int int64_t {aka long long int}
| %lld
socket_view.c:260:76: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'int64_t' {aka 'long long int'} [-Wformat=]
260 | fprintf(stderr, " -- Server fetch %d %ld %ld in %s -- %s:%d --\n", ref_id, start, end, __FUNCTION__, __FILE__, __LINE__);
| ~~^ ~~~
| | |
| long int int64_t {aka long long int}
| %lld
socket_view.c: In function 'main':
socket_view.c:484:51: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int64_t' {aka 'long long int'} [-Wformat=]
484 | printf("%d\t%s\t%ld\n", i, client->info->ref_names[i], client->info->ref_lengths[i]);
| ~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| | |
| long int int64_t {aka long long int}
| %lld
socket_view.c: In function 'closeViewClient':
socket_view.c:405:17: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result]
405 | write(client->socket, &op, sizeof(op));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
view_panel.c:1296:86: warning: '%s' directive writing up to 119 bytes into a region of size 108 [-Wformat-overflow=]
1296 | sprintf(vp->err_string, "set view to %s", vp->view_string);
| ^~
In file included from /usr/include/stdio.h:970,
from view_panel.c:2:
In function 'sprintf',
inlined from 'default_keyTyped' at view_panel.c:1296:7:
/usr/include/i386-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 13 and 132 bytes into a destination of size 120
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
view_panel.c: In function 'default_keyTyped':
view_panel.c:1291:91: warning: '%s' directive writing up to 119 bytes into a region of size 103 [-Wformat-overflow=]
1291 | sprintf(vp->err_string, "Cannot open view %s", vp->view_string);
| ^~
In function 'sprintf',
inlined from 'default_keyTyped' at view_panel.c:1291:7:
/usr/include/i386-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 18 and 137 bytes into a destination of size 120
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
view_panel.c: In function 'default_paintStatusBar':
view_panel.c:879:44: warning: ':[' directive writing 2 bytes into a region of size between 1 and 120 [-Wformat-overflow=]
879 | sprintf(vp->msg_string, "%s:[%s_]", vp->err_string, vp->view_string);
| ^~
In function 'sprintf',
inlined from 'default_paintStatusBar' at view_panel.c:879:3:
/usr/include/i386-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 5 and 243 bytes into a destination of size 120
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
view_panel.c: In function 'default_paintStatusBar':
view_panel.c:876:49: warning: '%s' directive writing up to 119 bytes into a region of size 113 [-Wformat-overflow=]
876 | sprintf(vp->msg_string, "Input:[%s_]", str);
| ^~ ~~~
In function 'sprintf',
inlined from 'default_paintStatusBar' at view_panel.c:876:3:
/usr/include/i386-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 10 and 129 bytes into a destination of size 120
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -L/usr/lib -o zrio zrio_main.o btree.o maqmap_index.o zrio.o stdhashc.o cns_cache.o const.o adler32.o compress.o crc32.o deflate.o gzio.o inffast.o inflate.o infback.o inftrees.o trees.o uncompr.o zutil.o
g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -L/usr/lib -o maqindex maqmap_index_main.o btree.o maqmap_index.o zrio.o stdhashc.o cns_cache.o const.o adler32.o compress.o crc32.o deflate.o gzio.o inffast.o inflate.o infback.o inftrees.o trees.o uncompr.o zutil.o
g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -L/usr/lib -o maqindex_socks read_cache.o view_goto.o socket_view.o btree.o maqmap_index.o zrio.o stdhashc.o cns_cache.o const.o adler32.o compress.o crc32.o deflate.o gzio.o inffast.o inflate.o infback.o inftrees.o trees.o uncompr.o zutil.o -Wl,-Bdynamic -lGL -lGLU -lglut -lm -lX11 -lXi
g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/maqview-0.2.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -L/usr/lib -o maqview read_cache.o view_goto.o view_panel.o gl_gui.o MainFrame.o btree.o maqmap_index.o zrio.o stdhashc.o cns_cache.o const.o adler32.o compress.o crc32.o deflate.o gzio.o inffast.o inflate.o infback.o inftrees.o trees.o uncompr.o zutil.o -Wl,-Bdynamic -lGL -lGLU -lglut -lm -lX11 -lXi
make[2]: Leaving directory '/build/reproducible-path/maqview-0.2.5'
make[1]: Leaving directory '/build/reproducible-path/maqview-0.2.5'
dh_auto_test
make -j11 check "TESTSUITEFLAGS=-j11 --verbose" VERBOSE=1
make[1]: Entering directory '/build/reproducible-path/maqview-0.2.5'
make[1]: Leaving directory '/build/reproducible-path/maqview-0.2.5'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/maqview/
make -j11 install DESTDIR=/build/reproducible-path/maqview-0.2.5/debian/maqview AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/build/reproducible-path/maqview-0.2.5'
make[2]: Entering directory '/build/reproducible-path/maqview-0.2.5'
make[2]: Nothing to be done for 'install-data-am'.
/usr/bin/mkdir -p '/build/reproducible-path/maqview-0.2.5/debian/maqview/usr/bin'
/usr/bin/install -c zrio maqindex maqview maqindex_socks '/build/reproducible-path/maqview-0.2.5/debian/maqview/usr/bin'
make[2]: Leaving directory '/build/reproducible-path/maqview-0.2.5'
make[1]: Leaving directory '/build/reproducible-path/maqview-0.2.5'
dh_installdocs
dh_installchangelogs
dh_installexamples
dh_installman
dh_lintian
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'maqview' in '../maqview_0.2.5-12_i386.deb'.
dpkg-deb: building package 'maqview-dbgsym' in '../maqview-dbgsym_0.2.5-12_i386.deb'.
dpkg-genbuildinfo --build=binary -O../maqview_0.2.5-12_i386.buildinfo
dpkg-genchanges --build=binary -O../maqview_0.2.5-12_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/58243 and its subdirectories
I: Current time: Thu Feb 20 17:25:10 -12 2025
I: pbuilder-time-stamp: 1740115510
Fri Feb 21 05:25:11 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net.
Fri Feb 21 05:25:11 UTC 2025 I: Preparing to do remote build '2' on ionos16-i386.debian.net.
Fri Feb 21 05:25:46 UTC 2025 I: Deleting $TMPDIR on ionos16-i386.debian.net.
Fri Feb 21 05:25:47 UTC 2025 I: maqview_0.2.5-12_i386.changes:
Format: 1.8
Date: Tue, 06 Aug 2024 09:57:02 +0200
Source: maqview
Binary: maqview maqview-dbgsym
Architecture: i386
Version: 0.2.5-12
Distribution: unstable
Urgency: medium
Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
maqview - graphical read alignment viewer for short gene sequences
Closes: 1075254
Changes:
maqview (0.2.5-12) unstable; urgency=medium
.
* Team upload.
* gcc-14.patch: new: fix a socket length type. (Closes: #1075254)
* d/maqview.lintian-overrides: refresh overrides.
* typo.patch: fix a typo caught by lintian (Toogle → Toggle).
* d/control: declare compliance to standards version 4.7.0.
Checksums-Sha1:
961e113370c05c8b1d27ef20713c978c0e45438f 545896 maqview-dbgsym_0.2.5-12_i386.deb
72b901e580f284a506e5dbe4756568faf5101b3b 6775 maqview_0.2.5-12_i386.buildinfo
2981c942ea1cc44a9fd5fe9e93c9b5f2744e4b99 128324 maqview_0.2.5-12_i386.deb
Checksums-Sha256:
378151dc70649a135665ee8f11f81244913d2f8a12b7e72e97c52e4bd78dccb4 545896 maqview-dbgsym_0.2.5-12_i386.deb
c5d6ac644e3d39c77eebf595cdb92431b6cf8fbe6ceb0bd8cda671ba014a5049 6775 maqview_0.2.5-12_i386.buildinfo
2110986fc3fa13ee4a2717e901d42149a9d5a6eb6de0d334b80ce24efdbc7798 128324 maqview_0.2.5-12_i386.deb
Files:
cce6c710bdc6dd9f2f0c833dd2805eb5 545896 debug optional maqview-dbgsym_0.2.5-12_i386.deb
82f59cd653e921759f42feba1aecd718 6775 science optional maqview_0.2.5-12_i386.buildinfo
cf1c924b8cf5652d37a4bce681f29652 128324 science optional maqview_0.2.5-12_i386.deb
Fri Feb 21 05:25:48 UTC 2025 I: diffoscope 288 will be used to compare the two builds:
Running as unit: rb-diffoscope-i386_7-58182.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.RVWtTKBg/maqview_0.2.5-12.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.RVWtTKBg/maqview_0.2.5-12.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.RVWtTKBg/maqview_0.2.5-12.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.RVWtTKBg/b1/maqview_0.2.5-12_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.RVWtTKBg/b2/maqview_0.2.5-12_i386.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.003s)
0.003s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 211ms
CPU time consumed: 212ms
Fri Feb 21 05:26:45 UTC 2025 I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists.
Fri Feb 21 05:26:45 UTC 2025 I: maqview from trixie built successfully and reproducibly on i386.
Fri Feb 21 05:26:46 UTC 2025 I: Submitting .buildinfo files to external archives:
Fri Feb 21 05:26:46 UTC 2025 I: Submitting 8.0K b1/maqview_0.2.5-12_i386.buildinfo.asc
Fri Feb 21 05:26:50 UTC 2025 I: Submitting 8.0K b2/maqview_0.2.5-12_i386.buildinfo.asc
Fri Feb 21 05:26:52 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Fri Feb 21 05:26:52 UTC 2025 I: Done submitting .buildinfo files.
Fri Feb 21 05:26:52 UTC 2025 I: Removing signed maqview_0.2.5-12_i386.buildinfo.asc files:
removed './b1/maqview_0.2.5-12_i386.buildinfo.asc'
removed './b2/maqview_0.2.5-12_i386.buildinfo.asc'