Sat Mar 30 13:03:05 UTC 2024 I: starting to build macs/trixie/i386 on jenkins on '2024-03-30 13:02' Sat Mar 30 13:03:05 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_5/13592/console.log Sat Mar 30 13:03:05 UTC 2024 I: Downloading source for trixie/macs=3.0.1-2 --2024-03-30 13:03:05-- http://deb.debian.org/debian/pool/main/m/macs/macs_3.0.1-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2152 (2.1K) [text/prs.lines.tag] Saving to: ‘macs_3.0.1-2.dsc’ 0K .. 100% 210M=0s 2024-03-30 13:03:05 (210 MB/s) - ‘macs_3.0.1-2.dsc’ saved [2152/2152] Sat Mar 30 13:03:05 UTC 2024 I: macs_3.0.1-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: macs Binary: macs Architecture: any Version: 3.0.1-2 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Andreas Tille Homepage: https://github.com/taoliu/MACS/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/macs Vcs-Git: https://salsa.debian.org/med-team/macs.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc Package-List: macs deb science optional arch=any Checksums-Sha1: 6aa3b6265224a0ff4ab0087f338620755ed4af24 197400439 macs_3.0.1.orig.tar.gz fb317ff34ff1ab5ab052ccf920400ddab3029ea1 1269452 macs_3.0.1-2.debian.tar.xz Checksums-Sha256: 8a2f5b2dccfc255ea2fd5e54e0d6aa9c12f5ce83762b17b779ce2546ade860ce 197400439 macs_3.0.1.orig.tar.gz 574073485deb40060e1daead6c9fc50853fdd4e380e59e7df2836a138a4afba5 1269452 macs_3.0.1-2.debian.tar.xz Files: 24d97ffa5f603717fcb14c2b0a4c1ecf 197400439 macs_3.0.1.orig.tar.gz 24102bb05c92072c5b290a869f2137cf 1269452 macs_3.0.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmXfHEcACgkQPCZ2P2xn 5uJ9Fg/9HE1EdK9g6OIyZGVUBmfwZEe6iVToMcg1ahKp+FEujvFc3UG72jNN+X9T vwu7BIoiRCLyNGvDMDjVUuimH+al4ghcXlWYKWWpixQ1aiNAAafr6JkhPynyj0bO x7fIXQEuHJICrEUFO3k0fPj5YJjUsG2xU/9nTZDsQ0vcO6Jxy1j5mF4mYp62GcQ4 mmF0whiApATlSaQPdA3nTPUo99HmlsSLGW9NSGgeJv2PDlfJPujr8Am5MC/p+OfD FeFL9VDg/tSYHRM2EGIthaVtMeFrmw/WRrDhLfYdS8Q7YmagP8rPXvqms/Gd/ZSh ec+LsuSqYJQQGDNW1Ve1gxjmsaXc4sRS/QdAik5WFn/iCzpH+mIGh+/xjnUP+hSl /4yb7n018/h5WHGozX8r6zTJ9Z458bhoZgAxZXyQiG7L4U7Ku1GBL5wBHcf/Z96w yMJZMBvxHA5zrbyBmKN2O7DGyWz7yclTvxnPJ3AU96nx2Y9z8ztRqQnlehbGf8Yq XBCvX2G3doA/7hF6D7wwEVXW84CwYQKPd9u6IsAo5TvKpzzjBl8cXO50xrpjI3Vs edh57uRU5RjzbmoYvGrelE1gs9uNCii+3f8uGUzD6qbsDCBR2t56G24Z8BSPz+K0 XYrCJV7zZCi5DiFeNqevrolXs1Jh4sLQiPXAhfSCi2Z6oPSEQwQ= =dUdP -----END PGP SIGNATURE----- Sat Mar 30 13:03:05 UTC 2024 I: Checking whether the package is not for us Sat Mar 30 13:03:05 UTC 2024 I: Starting 1st build on remote node ionos12-i386.debian.net. Sat Mar 30 13:03:05 UTC 2024 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Sat Mar 30 14:03:19 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Mar 30 01:03:12 -12 2024 I: pbuilder-time-stamp: 1711803792 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [macs_3.0.1-2.dsc] I: copying [./macs_3.0.1.orig.tar.gz] I: copying [./macs_3.0.1-2.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Feb 28 11:43:03 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./macs_3.0.1-2.dsc: no acceptable signature found dpkg-source: info: extracting macs in macs-3.0.1 dpkg-source: info: unpacking macs_3.0.1.orig.tar.gz dpkg-source: info: unpacking macs_3.0.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying invalid_escape_sequence dpkg-source: info: applying adapt_to_prelease_hmmlearn.patch dpkg-source: info: applying python3 dpkg-source: info: applying keep_debug dpkg-source: info: applying simde.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/49257/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='b4cb897e7e874812b59040af96a52660' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='49257' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zPTHTb8U/pbuilderrc_oxEV --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zPTHTb8U/b1 --logfile b1/build.log macs_3.0.1-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos12-i386 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 28 11:26 /bin -> usr/bin I: user script /srv/workspace/pbuilder/49257/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19876 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pip; however: Package python3-pip is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-cykhash; however: Package python3-cykhash is not installed. pbuilder-satisfydepends-dummy depends on python3-hmmlearn; however: Package python3-hmmlearn is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on procps; however: Package procps is not installed. pbuilder-satisfydepends-dummy depends on bc; however: Package bc is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bc{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libproc2-0{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8{a} libsimde-dev{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} procps{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-all-dev{a} python3-build{a} python3-cykhash{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-hmmlearn{a} python3-iniconfig{a} python3-installer{a} python3-joblib{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-packaging{a} python3-pip{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyproject-hooks{a} python3-pytest{a} python3-scipy{a} python3-setuptools{a} python3-sklearn{a} python3-sklearn-lib{a} python3-threadpoolctl{a} python3-toml{a} python3-wheel{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx psmisc python3-matplotlib python3-pil python3-psutil python3-pygments python3-simplejson wget 0 packages upgraded, 101 newly installed, 0 to remove and 0 not upgraded. Need to get 96.4 MB of archives. After unpacking 448 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 liblocale-gettext-perl i386 1.07-6+b1 [15.3 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libpython3.11-minimal i386 3.11.8-1 [817 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.5.0-2+b2 [104 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 python3.11-minimal i386 3.11.8-1 [2087 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.11.6-1 [26.2 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 tzdata all 2024a-1 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-3 [69.1 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libreadline8 i386 8.2-3+b1 [171 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpython3.11-stdlib i386 3.11.8-1 [1821 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 python3.11 i386 3.11.8-1 [597 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.11.6-1 [9224 B] Get: 14 http://deb.debian.org/debian trixie/main i386 python3 i386 3.11.6-1 [26.2 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.2-1 [807 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.2-1 [2244 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libproc2-0 i386 2:4.0.4-4 [65.4 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 procps i386 2:4.0.4-4 [876 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 openssl i386 3.1.5-1 [1246 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20240203 [158 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-2+b1 [314 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libmagic1 i386 1:5.45-2+b1 [114 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-2+b1 [43.0 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-3 [1195 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.39.3-6 [93.3 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-1+b2 [39.6 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.0-3 [1413 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 bc i386 1.07.1-3 [111 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 cython3 i386 3.0.8-1 [6323 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 45 http://deb.debian.org/debian trixie/main i386 libelf1 i386 0.190-1+b1 [182 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1 [118 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b2 [727 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 python3-lib2to3 all 3.11.5-1 [77.5 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 python3-distutils all 3.11.5-1 [131 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 68.1.2-2 [468 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20240310 [106 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 help2man i386 1.49.3 [198 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.0-3 [140 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libexpat1-dev i386 2.5.0-2+b2 [159 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14-20240201-3 [733 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.0-3 [2167 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 liblbfgsb0 i386 3.0+dfsg.4-1+b1 [29.1 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libpython3.11 i386 3.11.8-1 [2009 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg-3+b1 [915 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libpython3.11-dev i386 3.11.8-1 [4726 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libpython3-dev i386 3.11.6-1 [9496 B] Get: 71 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.2-1 [1927 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 libpython3.12 i386 3.12.2-1 [2156 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libpython3.12-dev i386 3.12.2-1 [5108 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 libpython3-all-dev i386 3.11.6-1 [1072 B] Get: 75 http://deb.debian.org/debian trixie/main i386 libsimde-dev all 0.8.0-1 [458 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 python3-packaging all 23.2-1 [44.8 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 python3-pyproject-hooks all 1.0.0-2 [10.6 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 python3-toml all 0.10.2-1 [16.2 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 python3-wheel all 0.43.0-1 [52.5 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 python3-build all 1.1.1-1 [32.5 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 pybuild-plugin-pyproject all 6.20240310 [10.9 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.2-1 [653 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.11.6-1 [1060 B] Get: 85 http://deb.debian.org/debian trixie/main i386 python3.11-dev i386 3.11.8-1 [509 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 python3-dev i386 3.11.6-1 [26.1 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 python3.12-dev i386 3.12.2-1 [507 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 python3-all-dev i386 3.11.6-1 [1080 B] Get: 89 http://deb.debian.org/debian trixie/main i386 python3-cykhash i386 2.0.0-3 [575 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 python3-decorator all 5.1.1-5 [15.1 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 python3-numpy i386 1:1.24.2-2 [4879 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 python3-scipy i386 1.11.4-6 [19.0 MB] Get: 93 http://deb.debian.org/debian trixie/main i386 python3-joblib all 1.3.2-2 [218 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 python3-sklearn-lib i386 1.4.1.post1+dfsg-1 [6130 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 python3-sklearn all 1.4.1.post1+dfsg-1 [2246 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 python3-hmmlearn i386 0.3.0-4 [144 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 99 http://deb.debian.org/debian trixie/main i386 python3-pip all 24.0+dfsg-2 [1517 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 python3-pluggy all 1.4.0-1 [26.2 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 python3-pytest all 7.4.4-3 [239 kB] Fetched 96.4 MB in 4s (24.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19876 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-6+b1_i386.deb ... Unpacking liblocale-gettext-perl (1.07-6+b1) ... Selecting previously unselected package libpython3.11-minimal:i386. Preparing to unpack .../libpython3.11-minimal_3.11.8-1_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.8-1) ... Selecting previously unselected package libexpat1:i386. 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Setting up python3-minimal (3.11.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21196 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.6-1_i386.deb ... Unpacking python3 (3.11.6-1) ... Selecting previously unselected package libpython3.12-minimal:i386. Preparing to unpack .../01-libpython3.12-minimal_3.12.2-1_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.2-1) ... 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Preparing to unpack .../80-python3-threadpoolctl_3.1.0-1_all.deb ... Unpacking python3-threadpoolctl (3.1.0-1) ... Selecting previously unselected package python3-sklearn-lib:i386. Preparing to unpack .../81-python3-sklearn-lib_1.4.1.post1+dfsg-1_i386.deb ... Unpacking python3-sklearn-lib:i386 (1.4.1.post1+dfsg-1) ... Selecting previously unselected package python3-sklearn. Preparing to unpack .../82-python3-sklearn_1.4.1.post1+dfsg-1_all.deb ... Unpacking python3-sklearn (1.4.1.post1+dfsg-1) ... Selecting previously unselected package python3-hmmlearn. Preparing to unpack .../83-python3-hmmlearn_0.3.0-4_i386.deb ... Unpacking python3-hmmlearn (0.3.0-4) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../84-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-pip. Preparing to unpack .../85-python3-pip_24.0+dfsg-2_all.deb ... Unpacking python3-pip (24.0+dfsg-2) ... 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Universal Time is now: Sat Mar 30 13:05:02 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libexpat1-dev:i386 (2.5.0-2+b2) ... Setting up libproc2-0:i386 (2:4.0.4-4) ... Setting up autopoint (0.21-14) ... Setting up libgfortran5:i386 (14-20240201-3) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg-3+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-4) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.1.5-1) ... Setting up libelf1:i386 (0.190-1+b1) ... Setting up readline-common (8.2-3) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b2) ... Setting up liblocale-gettext-perl (1.07-6+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.2-1) ... Setting up liblapack3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libreadline8:i386 (8.2-3+b1) ... Setting up bc (1.07.1-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up liblbfgsb0:i386 (3.0+dfsg.4-1+b1) ... Setting up libpython3.12-stdlib:i386 (3.12.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:i386 (3.11.8-1) ... Setting up python3.12 (3.12.2-1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3.12:i386 (3.12.2-1) ... Setting up libpython3-stdlib:i386 (3.11.6-1) ... Setting up python3.11 (3.11.8-1) ... Setting up libpython3.11:i386 (3.11.8-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.6-1) ... Setting up libpython3.12-dev:i386 (3.12.2-1) ... Setting up python3-wheel (0.43.0-1) ... Setting up python3-cykhash (2.0.0-3) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (23.2-1) ... Setting up python3-pyproject-hooks (1.0.0-2) ... Setting up libpython3.11-dev:i386 (3.11.8-1) ... Setting up python3.12-dev (3.12.2-1) ... Setting up cython3 (3.0.8-1) ... Setting up python3-pip (24.0+dfsg-2) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up python3-pluggy (1.4.0-1) ... Setting up python3-build (1.1.1-1) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up python3-iniconfig (1.1.1-2) ... Setting up libpython3-dev:i386 (3.11.6-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-joblib (1.3.2-2) ... Setting up python3.11-dev (3.11.8-1) ... Setting up python3-pytest (7.4.4-3) ... Setting up python3-threadpoolctl (3.1.0-1) ... Setting up python3-all (3.11.6-1) ... Setting up libpython3-all-dev:i386 (3.11.6-1) ... Setting up python3-dev (3.11.6-1) ... Setting up python3-numpy (1:1.24.2-2) ... Setting up dh-python (6.20240310) ... Setting up python3-all-dev (3.11.6-1) ... Setting up python3-scipy (1.11.4-6) ... Setting up pybuild-plugin-pyproject (6.20240310) ... Setting up python3-sklearn-lib:i386 (1.4.1.post1+dfsg-1) ... Setting up python3-sklearn (1.4.1.post1+dfsg-1) ... Setting up python3-hmmlearn (0.3.0-4) ... Processing triggers for libc-bin (2.37-15) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/macs-3.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../macs_3.0.1-2_source.changes dpkg-buildpackage: info: source package macs dpkg-buildpackage: info: source version 3.0.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from macs-3.0.1/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/macs-3.0.1' rm -Rf test/macs3.0.1-2* test/speedtest* rm -f debian/*.1 debian/*-man-include make[1]: Leaving directory '/build/reproducible-path/macs-3.0.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/macs-3.0.1' for pyx in $(find MACS3/ -name "*.pyx"); do \ rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done dh_auto_build I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:305: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/macs-3.0.1/.pybuild/cpython3_3.12_MACS3 * Building wheel... Compiling MACS3/Signal/HMMR_EM.pyx because it changed. Compiling MACS3/Signal/HMMR_Signal_Processing.pyx because it changed. Compiling MACS3/Signal/HMMR_HMM.pyx because it changed. Compiling MACS3/Signal/Prob.pyx because it changed. Compiling MACS3/Signal/Region.pyx because it changed. Compiling MACS3/Signal/Pileup.pyx because it changed. Compiling MACS3/Signal/PileupV2.pyx because it changed. Compiling MACS3/Signal/PeakModel.pyx because it changed. Compiling MACS3/Signal/PeakDetect.pyx because it changed. Compiling MACS3/Signal/SignalProcessing.pyx because it changed. Compiling MACS3/Signal/FixWidthTrack.pyx because it changed. Compiling MACS3/Signal/PairedEndTrack.pyx because it changed. Compiling MACS3/Signal/BedGraph.pyx because it changed. Compiling MACS3/Signal/ScoreTrack.pyx because it changed. Compiling MACS3/Signal/CallPeakUnit.pyx because it changed. Compiling MACS3/Signal/VariantStat.pyx because it changed. Compiling MACS3/Signal/ReadAlignment.pyx because it changed. Compiling MACS3/Signal/RACollection.pyx because it changed. Compiling MACS3/Signal/UnitigRACollection.pyx because it changed. Compiling MACS3/Signal/PosReadsInfo.pyx because it changed. Compiling MACS3/Signal/PeakVariants.pyx because it changed. Compiling MACS3/IO/Parser.pyx because it changed. Compiling MACS3/IO/PeakIO.pyx because it changed. Compiling MACS3/IO/BedGraphIO.pyx because it changed. Compiling MACS3/IO/BAM.pyx because it changed. [ 1/25] Cythonizing MACS3/IO/BAM.pyx [ 2/25] Cythonizing MACS3/IO/BedGraphIO.pyx [ 3/25] Cythonizing MACS3/IO/Parser.pyx [ 4/25] Cythonizing MACS3/IO/PeakIO.pyx [ 5/25] Cythonizing MACS3/Signal/BedGraph.pyx [ 6/25] Cythonizing MACS3/Signal/CallPeakUnit.pyx [ 7/25] Cythonizing MACS3/Signal/FixWidthTrack.pyx [ 8/25] Cythonizing MACS3/Signal/HMMR_EM.pyx [ 9/25] Cythonizing MACS3/Signal/HMMR_HMM.pyx [10/25] Cythonizing MACS3/Signal/HMMR_Signal_Processing.pyx [11/25] Cythonizing MACS3/Signal/PairedEndTrack.pyx [12/25] Cythonizing MACS3/Signal/PeakDetect.pyx [13/25] Cythonizing MACS3/Signal/PeakModel.pyx [14/25] Cythonizing MACS3/Signal/PeakVariants.pyx [15/25] Cythonizing MACS3/Signal/Pileup.pyx [16/25] Cythonizing MACS3/Signal/PileupV2.pyx [17/25] Cythonizing MACS3/Signal/PosReadsInfo.pyx [18/25] Cythonizing MACS3/Signal/Prob.pyx [19/25] Cythonizing MACS3/Signal/RACollection.pyx [20/25] Cythonizing MACS3/Signal/ReadAlignment.pyx [21/25] Cythonizing MACS3/Signal/Region.pyx [22/25] Cythonizing MACS3/Signal/ScoreTrack.pyx [23/25] Cythonizing MACS3/Signal/SignalProcessing.pyx [24/25] Cythonizing MACS3/Signal/UnitigRACollection.pyx [25/25] Cythonizing MACS3/Signal/VariantStat.pyx running bdist_wheel running build running build_py creating build creating build/lib.linux-i686-cpython-312 creating build/lib.linux-i686-cpython-312/MACS3 copying MACS3/__init__.py -> build/lib.linux-i686-cpython-312/MACS3 creating build/lib.linux-i686-cpython-312/MACS3/IO copying MACS3/IO/OutputWriter.py -> build/lib.linux-i686-cpython-312/MACS3/IO copying MACS3/IO/__init__.py -> build/lib.linux-i686-cpython-312/MACS3/IO creating build/lib.linux-i686-cpython-312/MACS3/Signal copying MACS3/Signal/__init__.py -> build/lib.linux-i686-cpython-312/MACS3/Signal creating build/lib.linux-i686-cpython-312/MACS3/Commands copying MACS3/Commands/cmbreps_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands copying MACS3/Commands/bdgopt_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands copying MACS3/Commands/filterdup_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands copying MACS3/Commands/diffpeak_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands copying MACS3/Commands/__init__.py -> build/lib.linux-i686-cpython-312/MACS3/Commands copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands copying MACS3/Commands/randsample_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands creating build/lib.linux-i686-cpython-312/MACS3/Utilities copying MACS3/Utilities/Constants.py -> build/lib.linux-i686-cpython-312/MACS3/Utilities copying MACS3/Utilities/OptValidator.py -> build/lib.linux-i686-cpython-312/MACS3/Utilities copying MACS3/Utilities/Logger.py -> build/lib.linux-i686-cpython-312/MACS3/Utilities copying MACS3/Utilities/__init__.py -> build/lib.linux-i686-cpython-312/MACS3/Utilities running build_ext building 'MACS3.Signal.HMMR_EM' extension creating build/temp.linux-i686-cpython-312 creating build/temp.linux-i686-cpython-312/MACS3 creating build/temp.linux-i686-cpython-312/MACS3/Signal i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/HMMR_EM.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/HMMR_EM.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/Signal/HMMR_EM.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-312/MACS3/Signal/HMMR_EM.cpython-312-i386-linux-gnu.so building 'MACS3.Signal.HMMR_Signal_Processing' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/HMMR_Signal_Processing.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/HMMR_Signal_Processing.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/Signal/HMMR_Signal_Processing.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-312/MACS3/Signal/HMMR_Signal_Processing.cpython-312-i386-linux-gnu.so building 'MACS3.Signal.HMMR_HMM' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/HMMR_HMM.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/HMMR_HMM.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/Signal/HMMR_HMM.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-312/MACS3/Signal/HMMR_HMM.cpython-312-i386-linux-gnu.so building 'MACS3.Signal.Prob' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/Prob.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/Prob.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/Signal/Prob.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-312/MACS3/Signal/Prob.cpython-312-i386-linux-gnu.so building 'MACS3.Signal.Region' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/Region.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/Region.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/Signal/Region.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-312/MACS3/Signal/Region.cpython-312-i386-linux-gnu.so building 'MACS3.Signal.Pileup' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/Pileup.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/Pileup.o -w -Ofast i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/cPosValCalculation.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/cPosValCalculation.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/Signal/Pileup.o build/temp.linux-i686-cpython-312/MACS3/Signal/cPosValCalculation.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-312/MACS3/Signal/Pileup.cpython-312-i386-linux-gnu.so building 'MACS3.Signal.PileupV2' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/PileupV2.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/PileupV2.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/Signal/PileupV2.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-312/MACS3/Signal/PileupV2.cpython-312-i386-linux-gnu.so building 'MACS3.Signal.PeakModel' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/PeakModel.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/PeakModel.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/Signal/PeakModel.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-312/MACS3/Signal/PeakModel.cpython-312-i386-linux-gnu.so building 'MACS3.Signal.PeakDetect' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c MACS3/Signal/PeakDetect.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/PeakDetect.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/Signal/PeakDetect.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-312/MACS3/Signal/PeakDetect.cpython-312-i386-linux-gnu.so building 'MACS3.Signal.SignalProcessing' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/SignalProcessing.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/SignalProcessing.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/Signal/SignalProcessing.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-312/MACS3/Signal/SignalProcessing.cpython-312-i386-linux-gnu.so building 'MACS3.Signal.FixWidthTrack' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/FixWidthTrack.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/FixWidthTrack.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/Signal/FixWidthTrack.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-312/MACS3/Signal/FixWidthTrack.cpython-312-i386-linux-gnu.so building 'MACS3.Signal.PairedEndTrack' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/PairedEndTrack.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/PairedEndTrack.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/Signal/PairedEndTrack.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-312/MACS3/Signal/PairedEndTrack.cpython-312-i386-linux-gnu.so building 'MACS3.Signal.BedGraph' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/BedGraph.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/BedGraph.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/Signal/BedGraph.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-312/MACS3/Signal/BedGraph.cpython-312-i386-linux-gnu.so building 'MACS3.Signal.ScoreTrack' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/ScoreTrack.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/ScoreTrack.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/Signal/ScoreTrack.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-312/MACS3/Signal/ScoreTrack.cpython-312-i386-linux-gnu.so building 'MACS3.Signal.CallPeakUnit' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/CallPeakUnit.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/CallPeakUnit.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/Signal/CallPeakUnit.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-312/MACS3/Signal/CallPeakUnit.cpython-312-i386-linux-gnu.so building 'MACS3.Signal.VariantStat' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/VariantStat.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/VariantStat.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/Signal/VariantStat.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-312/MACS3/Signal/VariantStat.cpython-312-i386-linux-gnu.so building 'MACS3.Signal.ReadAlignment' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/ReadAlignment.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/ReadAlignment.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/Signal/ReadAlignment.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-312/MACS3/Signal/ReadAlignment.cpython-312-i386-linux-gnu.so building 'MACS3.Signal.RACollection' extension creating build/temp.linux-i686-cpython-312/MACS3/fermi-lite i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/Signal/RACollection.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/RACollection.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/Signal/swalign.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/swalign.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/bfc.c -o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/bfc.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/bseq.c -o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/bseq.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/bubble.c -o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/bubble.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/htab.c -o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/htab.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/ksw.c -o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/ksw.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/kthread.c -o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/kthread.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/mag.c -o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/mag.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/misc.c -o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/misc.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/mrope.c -o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/mrope.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/rld0.c -o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/rld0.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/rle.c -o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/rle.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/rope.c -o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/rope.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/unitig.c -o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/unitig.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/Signal/RACollection.o build/temp.linux-i686-cpython-312/MACS3/Signal/swalign.o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/bfc.o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/bseq.o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/bubble.o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/htab.o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/ksw.o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/kthread.o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/mag.o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/misc.o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/mrope.o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/rld0.o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/rle.o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/rope.o build/temp.linux-i686-cpython-312/MACS3/fermi-lite/unitig.o -L/usr/lib/i386-linux-gnu -lm -lz -o build/lib.linux-i686-cpython-312/MACS3/Signal/RACollection.cpython-312-i386-linux-gnu.so building 'MACS3.Signal.UnitigRACollection' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/UnitigRACollection.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/UnitigRACollection.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/Signal/UnitigRACollection.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-312/MACS3/Signal/UnitigRACollection.cpython-312-i386-linux-gnu.so building 'MACS3.Signal.PosReadsInfo' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/PosReadsInfo.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/PosReadsInfo.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/Signal/PosReadsInfo.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-312/MACS3/Signal/PosReadsInfo.cpython-312-i386-linux-gnu.so building 'MACS3.Signal.PeakVariants' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/PeakVariants.c -o build/temp.linux-i686-cpython-312/MACS3/Signal/PeakVariants.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/Signal/PeakVariants.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-312/MACS3/Signal/PeakVariants.cpython-312-i386-linux-gnu.so building 'MACS3.IO.Parser' extension creating build/temp.linux-i686-cpython-312/MACS3/IO i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/IO/Parser.c -o build/temp.linux-i686-cpython-312/MACS3/IO/Parser.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/IO/Parser.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-312/MACS3/IO/Parser.cpython-312-i386-linux-gnu.so building 'MACS3.IO.PeakIO' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c MACS3/IO/PeakIO.c -o build/temp.linux-i686-cpython-312/MACS3/IO/PeakIO.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/IO/PeakIO.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-312/MACS3/IO/PeakIO.cpython-312-i386-linux-gnu.so building 'MACS3.IO.BedGraphIO' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c MACS3/IO/BedGraphIO.c -o build/temp.linux-i686-cpython-312/MACS3/IO/BedGraphIO.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/IO/BedGraphIO.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-312/MACS3/IO/BedGraphIO.cpython-312-i386-linux-gnu.so building 'MACS3.IO.BAM' extension i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/IO/BAM.c -o build/temp.linux-i686-cpython-312/MACS3/IO/BAM.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/MACS3/IO/BAM.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-312/MACS3/IO/BAM.cpython-312-i386-linux-gnu.so running build_scripts creating build/scripts-3.12 copying and adjusting bin/macs3 -> build/scripts-3.12 changing mode of build/scripts-3.12/macs3 from 644 to 755 installing to build/bdist.linux-i686/wheel running install running install_lib creating build/bdist.linux-i686 creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/MACS3 creating build/bdist.linux-i686/wheel/MACS3/IO copying build/lib.linux-i686-cpython-312/MACS3/IO/BedGraphIO.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/IO copying build/lib.linux-i686-cpython-312/MACS3/IO/Parser.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/IO copying build/lib.linux-i686-cpython-312/MACS3/IO/OutputWriter.py -> build/bdist.linux-i686/wheel/MACS3/IO copying build/lib.linux-i686-cpython-312/MACS3/IO/__init__.py -> build/bdist.linux-i686/wheel/MACS3/IO copying build/lib.linux-i686-cpython-312/MACS3/IO/BAM.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/IO copying build/lib.linux-i686-cpython-312/MACS3/IO/PeakIO.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/IO creating build/bdist.linux-i686/wheel/MACS3/Utilities copying build/lib.linux-i686-cpython-312/MACS3/Utilities/Constants.py -> build/bdist.linux-i686/wheel/MACS3/Utilities copying build/lib.linux-i686-cpython-312/MACS3/Utilities/OptValidator.py -> build/bdist.linux-i686/wheel/MACS3/Utilities copying build/lib.linux-i686-cpython-312/MACS3/Utilities/Logger.py -> build/bdist.linux-i686/wheel/MACS3/Utilities copying build/lib.linux-i686-cpython-312/MACS3/Utilities/__init__.py -> build/bdist.linux-i686/wheel/MACS3/Utilities copying build/lib.linux-i686-cpython-312/MACS3/__init__.py -> build/bdist.linux-i686/wheel/MACS3 creating build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-312/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-312/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-312/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-312/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-312/MACS3/Commands/diffpeak_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-312/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-312/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-312/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-312/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-312/MACS3/Commands/__init__.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-312/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-312/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-312/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-312/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-312/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-312/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands creating build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/SignalProcessing.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/BedGraph.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/VariantStat.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/Pileup.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/PosReadsInfo.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/CallPeakUnit.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/Region.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/ScoreTrack.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/HMMR_Signal_Processing.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/HMMR_HMM.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/PeakVariants.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/PeakDetect.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/PeakModel.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/UnitigRACollection.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/__init__.py -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/FixWidthTrack.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/ReadAlignment.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/Prob.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/RACollection.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/PairedEndTrack.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/HMMR_EM.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/PileupV2.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal running install_egg_info running egg_info creating MACS3.egg-info writing MACS3.egg-info/PKG-INFO writing dependency_links to MACS3.egg-info/dependency_links.txt writing requirements to MACS3.egg-info/requires.txt writing top-level names to MACS3.egg-info/top_level.txt writing manifest file 'MACS3.egg-info/SOURCES.txt' dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'MACS3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'make_docker_base.sh' warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'MACS3.egg-info/SOURCES.txt' Copying MACS3.egg-info to build/bdist.linux-i686/wheel/MACS3-3.0.1.egg-info running install_scripts creating build/bdist.linux-i686/wheel/MACS3-3.0.1.data creating build/bdist.linux-i686/wheel/MACS3-3.0.1.data/scripts copying build/scripts-3.12/macs3 -> build/bdist.linux-i686/wheel/MACS3-3.0.1.data/scripts changing mode of build/bdist.linux-i686/wheel/MACS3-3.0.1.data/scripts/macs3 to 755 creating build/bdist.linux-i686/wheel/MACS3-3.0.1.dist-info/WHEEL creating '/build/reproducible-path/macs-3.0.1/.pybuild/cpython3_3.12_MACS3/.tmp-zoxxiwfd/MACS3-3.0.1-cp312-cp312-linux_i686.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'MACS3/__init__.py' adding 'MACS3/Commands/__init__.py' adding 'MACS3/Commands/bdgbroadcall_cmd.py' adding 'MACS3/Commands/bdgcmp_cmd.py' adding 'MACS3/Commands/bdgdiff_cmd.py' adding 'MACS3/Commands/bdgopt_cmd.py' adding 'MACS3/Commands/bdgpeakcall_cmd.py' adding 'MACS3/Commands/callpeak_cmd.py' adding 'MACS3/Commands/callvar_cmd.py' adding 'MACS3/Commands/cmbreps_cmd.py' adding 'MACS3/Commands/diffpeak_cmd.py' adding 'MACS3/Commands/filterdup_cmd.py' adding 'MACS3/Commands/hmmratac_cmd.py' adding 'MACS3/Commands/pileup_cmd.py' adding 'MACS3/Commands/predictd_cmd.py' adding 'MACS3/Commands/randsample_cmd.py' adding 'MACS3/Commands/refinepeak_cmd.py' adding 'MACS3/IO/BAM.cpython-312-i386-linux-gnu.so' adding 'MACS3/IO/BedGraphIO.cpython-312-i386-linux-gnu.so' adding 'MACS3/IO/OutputWriter.py' adding 'MACS3/IO/Parser.cpython-312-i386-linux-gnu.so' adding 'MACS3/IO/PeakIO.cpython-312-i386-linux-gnu.so' adding 'MACS3/IO/__init__.py' adding 'MACS3/Signal/BedGraph.cpython-312-i386-linux-gnu.so' adding 'MACS3/Signal/CallPeakUnit.cpython-312-i386-linux-gnu.so' adding 'MACS3/Signal/FixWidthTrack.cpython-312-i386-linux-gnu.so' adding 'MACS3/Signal/HMMR_EM.cpython-312-i386-linux-gnu.so' adding 'MACS3/Signal/HMMR_HMM.cpython-312-i386-linux-gnu.so' adding 'MACS3/Signal/HMMR_Signal_Processing.cpython-312-i386-linux-gnu.so' adding 'MACS3/Signal/PairedEndTrack.cpython-312-i386-linux-gnu.so' adding 'MACS3/Signal/PeakDetect.cpython-312-i386-linux-gnu.so' adding 'MACS3/Signal/PeakModel.cpython-312-i386-linux-gnu.so' adding 'MACS3/Signal/PeakVariants.cpython-312-i386-linux-gnu.so' adding 'MACS3/Signal/Pileup.cpython-312-i386-linux-gnu.so' adding 'MACS3/Signal/PileupV2.cpython-312-i386-linux-gnu.so' adding 'MACS3/Signal/PosReadsInfo.cpython-312-i386-linux-gnu.so' adding 'MACS3/Signal/Prob.cpython-312-i386-linux-gnu.so' adding 'MACS3/Signal/RACollection.cpython-312-i386-linux-gnu.so' adding 'MACS3/Signal/ReadAlignment.cpython-312-i386-linux-gnu.so' adding 'MACS3/Signal/Region.cpython-312-i386-linux-gnu.so' adding 'MACS3/Signal/ScoreTrack.cpython-312-i386-linux-gnu.so' adding 'MACS3/Signal/SignalProcessing.cpython-312-i386-linux-gnu.so' adding 'MACS3/Signal/UnitigRACollection.cpython-312-i386-linux-gnu.so' adding 'MACS3/Signal/VariantStat.cpython-312-i386-linux-gnu.so' adding 'MACS3/Signal/__init__.py' adding 'MACS3/Utilities/Constants.py' adding 'MACS3/Utilities/Logger.py' adding 'MACS3/Utilities/OptValidator.py' adding 'MACS3/Utilities/__init__.py' adding 'MACS3-3.0.1.data/scripts/macs3' adding 'MACS3-3.0.1.dist-info/LICENSE' adding 'MACS3-3.0.1.dist-info/METADATA' adding 'MACS3-3.0.1.dist-info/WHEEL' adding 'MACS3-3.0.1.dist-info/top_level.txt' adding 'MACS3-3.0.1.dist-info/RECORD' removing build/bdist.linux-i686/wheel Successfully built MACS3-3.0.1-cp312-cp312-linux_i686.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module I: pybuild plugin_pyproject:129: Building wheel for python3.11 with "build" module I: pybuild base:305: python3.11 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/macs-3.0.1/.pybuild/cpython3_3.11_MACS3 * Building wheel... running bdist_wheel running build running build_py creating build/lib.linux-i686-cpython-311 creating build/lib.linux-i686-cpython-311/MACS3 copying MACS3/__init__.py -> build/lib.linux-i686-cpython-311/MACS3 creating build/lib.linux-i686-cpython-311/MACS3/IO copying MACS3/IO/OutputWriter.py -> build/lib.linux-i686-cpython-311/MACS3/IO copying MACS3/IO/__init__.py -> build/lib.linux-i686-cpython-311/MACS3/IO creating build/lib.linux-i686-cpython-311/MACS3/Signal copying MACS3/Signal/__init__.py -> build/lib.linux-i686-cpython-311/MACS3/Signal creating build/lib.linux-i686-cpython-311/MACS3/Commands copying MACS3/Commands/cmbreps_cmd.py -> build/lib.linux-i686-cpython-311/MACS3/Commands copying MACS3/Commands/bdgopt_cmd.py -> build/lib.linux-i686-cpython-311/MACS3/Commands copying MACS3/Commands/filterdup_cmd.py -> build/lib.linux-i686-cpython-311/MACS3/Commands copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-i686-cpython-311/MACS3/Commands copying MACS3/Commands/diffpeak_cmd.py -> build/lib.linux-i686-cpython-311/MACS3/Commands copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-i686-cpython-311/MACS3/Commands copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-i686-cpython-311/MACS3/Commands copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-i686-cpython-311/MACS3/Commands copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.linux-i686-cpython-311/MACS3/Commands copying MACS3/Commands/__init__.py -> build/lib.linux-i686-cpython-311/MACS3/Commands copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-i686-cpython-311/MACS3/Commands copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-i686-cpython-311/MACS3/Commands copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-i686-cpython-311/MACS3/Commands copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-i686-cpython-311/MACS3/Commands copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-i686-cpython-311/MACS3/Commands copying MACS3/Commands/randsample_cmd.py -> build/lib.linux-i686-cpython-311/MACS3/Commands creating build/lib.linux-i686-cpython-311/MACS3/Utilities copying MACS3/Utilities/Constants.py -> build/lib.linux-i686-cpython-311/MACS3/Utilities copying MACS3/Utilities/OptValidator.py -> build/lib.linux-i686-cpython-311/MACS3/Utilities copying MACS3/Utilities/Logger.py -> build/lib.linux-i686-cpython-311/MACS3/Utilities copying MACS3/Utilities/__init__.py -> build/lib.linux-i686-cpython-311/MACS3/Utilities running build_ext building 'MACS3.Signal.HMMR_EM' extension creating build/temp.linux-i686-cpython-311 creating build/temp.linux-i686-cpython-311/MACS3 creating build/temp.linux-i686-cpython-311/MACS3/Signal i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/HMMR_EM.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/HMMR_EM.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/Signal/HMMR_EM.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-311/MACS3/Signal/HMMR_EM.cpython-311-i386-linux-gnu.so building 'MACS3.Signal.HMMR_Signal_Processing' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/HMMR_Signal_Processing.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/HMMR_Signal_Processing.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/Signal/HMMR_Signal_Processing.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-311/MACS3/Signal/HMMR_Signal_Processing.cpython-311-i386-linux-gnu.so building 'MACS3.Signal.HMMR_HMM' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/HMMR_HMM.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/HMMR_HMM.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/Signal/HMMR_HMM.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-311/MACS3/Signal/HMMR_HMM.cpython-311-i386-linux-gnu.so building 'MACS3.Signal.Prob' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/Prob.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/Prob.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/Signal/Prob.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-311/MACS3/Signal/Prob.cpython-311-i386-linux-gnu.so building 'MACS3.Signal.Region' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/Region.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/Region.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/Signal/Region.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-311/MACS3/Signal/Region.cpython-311-i386-linux-gnu.so building 'MACS3.Signal.Pileup' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/Pileup.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/Pileup.o -w -Ofast i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/cPosValCalculation.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/cPosValCalculation.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/Signal/Pileup.o build/temp.linux-i686-cpython-311/MACS3/Signal/cPosValCalculation.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-311/MACS3/Signal/Pileup.cpython-311-i386-linux-gnu.so building 'MACS3.Signal.PileupV2' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/PileupV2.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/PileupV2.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/Signal/PileupV2.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-311/MACS3/Signal/PileupV2.cpython-311-i386-linux-gnu.so building 'MACS3.Signal.PeakModel' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/PeakModel.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/PeakModel.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/Signal/PeakModel.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-311/MACS3/Signal/PeakModel.cpython-311-i386-linux-gnu.so building 'MACS3.Signal.PeakDetect' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c MACS3/Signal/PeakDetect.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/PeakDetect.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/Signal/PeakDetect.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-311/MACS3/Signal/PeakDetect.cpython-311-i386-linux-gnu.so building 'MACS3.Signal.SignalProcessing' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/SignalProcessing.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/SignalProcessing.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/Signal/SignalProcessing.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-311/MACS3/Signal/SignalProcessing.cpython-311-i386-linux-gnu.so building 'MACS3.Signal.FixWidthTrack' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/FixWidthTrack.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/FixWidthTrack.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/Signal/FixWidthTrack.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-311/MACS3/Signal/FixWidthTrack.cpython-311-i386-linux-gnu.so building 'MACS3.Signal.PairedEndTrack' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/PairedEndTrack.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/PairedEndTrack.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/Signal/PairedEndTrack.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-311/MACS3/Signal/PairedEndTrack.cpython-311-i386-linux-gnu.so building 'MACS3.Signal.BedGraph' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/BedGraph.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/BedGraph.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/Signal/BedGraph.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-311/MACS3/Signal/BedGraph.cpython-311-i386-linux-gnu.so building 'MACS3.Signal.ScoreTrack' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/ScoreTrack.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/ScoreTrack.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/Signal/ScoreTrack.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-311/MACS3/Signal/ScoreTrack.cpython-311-i386-linux-gnu.so building 'MACS3.Signal.CallPeakUnit' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/CallPeakUnit.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/CallPeakUnit.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/Signal/CallPeakUnit.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-311/MACS3/Signal/CallPeakUnit.cpython-311-i386-linux-gnu.so building 'MACS3.Signal.VariantStat' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/VariantStat.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/VariantStat.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/Signal/VariantStat.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-311/MACS3/Signal/VariantStat.cpython-311-i386-linux-gnu.so building 'MACS3.Signal.ReadAlignment' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/ReadAlignment.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/ReadAlignment.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/Signal/ReadAlignment.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-311/MACS3/Signal/ReadAlignment.cpython-311-i386-linux-gnu.so building 'MACS3.Signal.RACollection' extension creating build/temp.linux-i686-cpython-311/MACS3/fermi-lite i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/Signal/RACollection.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/RACollection.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/Signal/swalign.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/swalign.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/bfc.c -o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/bfc.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/bseq.c -o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/bseq.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/bubble.c -o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/bubble.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/htab.c -o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/htab.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/ksw.c -o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/ksw.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/kthread.c -o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/kthread.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/mag.c -o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/mag.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/misc.c -o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/misc.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/mrope.c -o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/mrope.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/rld0.c -o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/rld0.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/rle.c -o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/rle.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/rope.c -o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/rope.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.11 -c MACS3/fermi-lite/unitig.c -o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/unitig.o -w -Ofast -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/Signal/RACollection.o build/temp.linux-i686-cpython-311/MACS3/Signal/swalign.o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/bfc.o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/bseq.o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/bubble.o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/htab.o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/ksw.o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/kthread.o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/mag.o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/misc.o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/mrope.o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/rld0.o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/rle.o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/rope.o build/temp.linux-i686-cpython-311/MACS3/fermi-lite/unitig.o -L/usr/lib/i386-linux-gnu -lm -lz -o build/lib.linux-i686-cpython-311/MACS3/Signal/RACollection.cpython-311-i386-linux-gnu.so building 'MACS3.Signal.UnitigRACollection' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/UnitigRACollection.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/UnitigRACollection.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/Signal/UnitigRACollection.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-311/MACS3/Signal/UnitigRACollection.cpython-311-i386-linux-gnu.so building 'MACS3.Signal.PosReadsInfo' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/PosReadsInfo.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/PosReadsInfo.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/Signal/PosReadsInfo.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-311/MACS3/Signal/PosReadsInfo.cpython-311-i386-linux-gnu.so building 'MACS3.Signal.PeakVariants' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/Signal/PeakVariants.c -o build/temp.linux-i686-cpython-311/MACS3/Signal/PeakVariants.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/Signal/PeakVariants.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-311/MACS3/Signal/PeakVariants.cpython-311-i386-linux-gnu.so building 'MACS3.IO.Parser' extension creating build/temp.linux-i686-cpython-311/MACS3/IO i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/IO/Parser.c -o build/temp.linux-i686-cpython-311/MACS3/IO/Parser.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/IO/Parser.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-311/MACS3/IO/Parser.cpython-311-i386-linux-gnu.so building 'MACS3.IO.PeakIO' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c MACS3/IO/PeakIO.c -o build/temp.linux-i686-cpython-311/MACS3/IO/PeakIO.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/IO/PeakIO.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-311/MACS3/IO/PeakIO.cpython-311-i386-linux-gnu.so building 'MACS3.IO.BedGraphIO' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c MACS3/IO/BedGraphIO.c -o build/temp.linux-i686-cpython-311/MACS3/IO/BedGraphIO.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/IO/BedGraphIO.o -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-311/MACS3/IO/BedGraphIO.cpython-311-i386-linux-gnu.so building 'MACS3.IO.BAM' extension i686-linux-gnu-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.11 -c MACS3/IO/BAM.c -o build/temp.linux-i686-cpython-311/MACS3/IO/BAM.o -w -Ofast i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/macs-3.0.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-311/MACS3/IO/BAM.o -L/usr/lib/i386-linux-gnu -lm -o build/lib.linux-i686-cpython-311/MACS3/IO/BAM.cpython-311-i386-linux-gnu.so running build_scripts creating build/scripts-3.11 copying and adjusting bin/macs3 -> build/scripts-3.11 changing mode of build/scripts-3.11/macs3 from 644 to 755 installing to build/bdist.linux-i686/wheel running install running install_lib creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/MACS3 creating build/bdist.linux-i686/wheel/MACS3/IO copying build/lib.linux-i686-cpython-311/MACS3/IO/BedGraphIO.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/IO copying build/lib.linux-i686-cpython-311/MACS3/IO/BAM.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/IO copying build/lib.linux-i686-cpython-311/MACS3/IO/OutputWriter.py -> build/bdist.linux-i686/wheel/MACS3/IO copying build/lib.linux-i686-cpython-311/MACS3/IO/PeakIO.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/IO copying build/lib.linux-i686-cpython-311/MACS3/IO/__init__.py -> build/bdist.linux-i686/wheel/MACS3/IO copying build/lib.linux-i686-cpython-311/MACS3/IO/Parser.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/IO creating build/bdist.linux-i686/wheel/MACS3/Utilities copying build/lib.linux-i686-cpython-311/MACS3/Utilities/Constants.py -> build/bdist.linux-i686/wheel/MACS3/Utilities copying build/lib.linux-i686-cpython-311/MACS3/Utilities/OptValidator.py -> build/bdist.linux-i686/wheel/MACS3/Utilities copying build/lib.linux-i686-cpython-311/MACS3/Utilities/Logger.py -> build/bdist.linux-i686/wheel/MACS3/Utilities copying build/lib.linux-i686-cpython-311/MACS3/Utilities/__init__.py -> build/bdist.linux-i686/wheel/MACS3/Utilities copying build/lib.linux-i686-cpython-311/MACS3/__init__.py -> build/bdist.linux-i686/wheel/MACS3 creating build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-311/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-311/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-311/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-311/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-311/MACS3/Commands/diffpeak_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-311/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-311/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-311/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-311/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-311/MACS3/Commands/__init__.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-311/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-311/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-311/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-311/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-311/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands copying build/lib.linux-i686-cpython-311/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-i686/wheel/MACS3/Commands creating build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-311/MACS3/Signal/Region.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-311/MACS3/Signal/PairedEndTrack.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-311/MACS3/Signal/ReadAlignment.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-311/MACS3/Signal/PosReadsInfo.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-311/MACS3/Signal/VariantStat.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-311/MACS3/Signal/FixWidthTrack.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-311/MACS3/Signal/PeakDetect.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-311/MACS3/Signal/Prob.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-311/MACS3/Signal/HMMR_Signal_Processing.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-311/MACS3/Signal/HMMR_HMM.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-311/MACS3/Signal/Pileup.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-311/MACS3/Signal/PileupV2.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-311/MACS3/Signal/SignalProcessing.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-311/MACS3/Signal/__init__.py -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-311/MACS3/Signal/PeakModel.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-311/MACS3/Signal/PeakVariants.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-311/MACS3/Signal/ScoreTrack.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-311/MACS3/Signal/HMMR_EM.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-311/MACS3/Signal/UnitigRACollection.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-311/MACS3/Signal/CallPeakUnit.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-311/MACS3/Signal/RACollection.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal copying build/lib.linux-i686-cpython-311/MACS3/Signal/BedGraph.cpython-311-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/MACS3/Signal running install_egg_info running egg_info writing MACS3.egg-info/PKG-INFO writing dependency_links to MACS3.egg-info/dependency_links.txt writing requirements to MACS3.egg-info/requires.txt writing top-level names to MACS3.egg-info/top_level.txt dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'MACS3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'make_docker_base.sh' warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'MACS3.egg-info/SOURCES.txt' Copying MACS3.egg-info to build/bdist.linux-i686/wheel/MACS3-3.0.1.egg-info running install_scripts creating build/bdist.linux-i686/wheel/MACS3-3.0.1.data creating build/bdist.linux-i686/wheel/MACS3-3.0.1.data/scripts copying build/scripts-3.11/macs3 -> build/bdist.linux-i686/wheel/MACS3-3.0.1.data/scripts changing mode of build/bdist.linux-i686/wheel/MACS3-3.0.1.data/scripts/macs3 to 755 creating build/bdist.linux-i686/wheel/MACS3-3.0.1.dist-info/WHEEL creating '/build/reproducible-path/macs-3.0.1/.pybuild/cpython3_3.11_MACS3/.tmp-5cwcwnhf/MACS3-3.0.1-cp311-cp311-linux_i686.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'MACS3/__init__.py' adding 'MACS3/Commands/__init__.py' adding 'MACS3/Commands/bdgbroadcall_cmd.py' adding 'MACS3/Commands/bdgcmp_cmd.py' adding 'MACS3/Commands/bdgdiff_cmd.py' adding 'MACS3/Commands/bdgopt_cmd.py' adding 'MACS3/Commands/bdgpeakcall_cmd.py' adding 'MACS3/Commands/callpeak_cmd.py' adding 'MACS3/Commands/callvar_cmd.py' adding 'MACS3/Commands/cmbreps_cmd.py' adding 'MACS3/Commands/diffpeak_cmd.py' adding 'MACS3/Commands/filterdup_cmd.py' adding 'MACS3/Commands/hmmratac_cmd.py' adding 'MACS3/Commands/pileup_cmd.py' adding 'MACS3/Commands/predictd_cmd.py' adding 'MACS3/Commands/randsample_cmd.py' adding 'MACS3/Commands/refinepeak_cmd.py' adding 'MACS3/IO/BAM.cpython-311-i386-linux-gnu.so' adding 'MACS3/IO/BedGraphIO.cpython-311-i386-linux-gnu.so' adding 'MACS3/IO/OutputWriter.py' adding 'MACS3/IO/Parser.cpython-311-i386-linux-gnu.so' adding 'MACS3/IO/PeakIO.cpython-311-i386-linux-gnu.so' adding 'MACS3/IO/__init__.py' adding 'MACS3/Signal/BedGraph.cpython-311-i386-linux-gnu.so' adding 'MACS3/Signal/CallPeakUnit.cpython-311-i386-linux-gnu.so' adding 'MACS3/Signal/FixWidthTrack.cpython-311-i386-linux-gnu.so' adding 'MACS3/Signal/HMMR_EM.cpython-311-i386-linux-gnu.so' adding 'MACS3/Signal/HMMR_HMM.cpython-311-i386-linux-gnu.so' adding 'MACS3/Signal/HMMR_Signal_Processing.cpython-311-i386-linux-gnu.so' adding 'MACS3/Signal/PairedEndTrack.cpython-311-i386-linux-gnu.so' adding 'MACS3/Signal/PeakDetect.cpython-311-i386-linux-gnu.so' adding 'MACS3/Signal/PeakModel.cpython-311-i386-linux-gnu.so' adding 'MACS3/Signal/PeakVariants.cpython-311-i386-linux-gnu.so' adding 'MACS3/Signal/Pileup.cpython-311-i386-linux-gnu.so' adding 'MACS3/Signal/PileupV2.cpython-311-i386-linux-gnu.so' adding 'MACS3/Signal/PosReadsInfo.cpython-311-i386-linux-gnu.so' adding 'MACS3/Signal/Prob.cpython-311-i386-linux-gnu.so' adding 'MACS3/Signal/RACollection.cpython-311-i386-linux-gnu.so' adding 'MACS3/Signal/ReadAlignment.cpython-311-i386-linux-gnu.so' adding 'MACS3/Signal/Region.cpython-311-i386-linux-gnu.so' adding 'MACS3/Signal/ScoreTrack.cpython-311-i386-linux-gnu.so' adding 'MACS3/Signal/SignalProcessing.cpython-311-i386-linux-gnu.so' adding 'MACS3/Signal/UnitigRACollection.cpython-311-i386-linux-gnu.so' adding 'MACS3/Signal/VariantStat.cpython-311-i386-linux-gnu.so' adding 'MACS3/Signal/__init__.py' adding 'MACS3/Utilities/Constants.py' adding 'MACS3/Utilities/Logger.py' adding 'MACS3/Utilities/OptValidator.py' adding 'MACS3/Utilities/__init__.py' adding 'MACS3-3.0.1.data/scripts/macs3' adding 'MACS3-3.0.1.dist-info/LICENSE' adding 'MACS3-3.0.1.dist-info/METADATA' adding 'MACS3-3.0.1.dist-info/WHEEL' adding 'MACS3-3.0.1.dist-info/top_level.txt' adding 'MACS3-3.0.1.dist-info/RECORD' removing build/bdist.linux-i686/wheel Successfully built MACS3-3.0.1-cp311-cp311-linux_i686.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.11 with "installer" module PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS3/build/ help2man \ --no-discard-stderr --no-info \ --name "macs3 \- Model\-based Analysis for ChIP\-Sequencing" "python3 bin/macs3" > debian/macs3.1 for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \ "[NAME]\nmac3_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \ > debian/macs3_${subcommand}-man-include; done for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \ PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS3/build/ help2man \ --no-discard-stderr --no-info --version-string="3.0.1" \ --include debian/macs3_${subcommand}-man-include \ "python3 bin/macs3 ${subcommand}" > \ debian/macs3_${subcommand}.1; done make[1]: Leaving directory '/build/reproducible-path/macs-3.0.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/macs-3.0.1' dh_auto_test I: pybuild base:305: cd /build/reproducible-path/macs-3.0.1/.pybuild/cpython3_3.12_MACS3/build; python3.12 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 rootdir: /build/reproducible-path/macs-3.0.1 collected 64 items test/test_BAMBAI.py ........... [ 17%] test/test_BedGraph.py .. [ 20%] test/test_FixWidthTrack.py .... [ 26%] test/test_HMMR_HMM.py . [ 28%] test/test_PairedEndTrack.py .... [ 34%] test/test_Parser.py ... [ 39%] test/test_PeakIO.py . [ 40%] test/test_Pileup.py .......... [ 56%] test/test_Prob.py ................ [ 81%] test/test_Region.py ..... [ 89%] test/test_ScoreTrack.py .... [ 95%] test/test_SignalProcessing.py s. [ 98%] test/test_online.py . [100%] ======================== 63 passed, 1 skipped in 45.02s ======================== I: pybuild base:305: cd /build/reproducible-path/macs-3.0.1/.pybuild/cpython3_3.11_MACS3/build; python3.11 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.11.8, pytest-7.4.4, pluggy-1.4.0 rootdir: /build/reproducible-path/macs-3.0.1 collected 64 items test/test_BAMBAI.py ........... [ 17%] test/test_BedGraph.py .. [ 20%] test/test_FixWidthTrack.py .... [ 26%] test/test_HMMR_HMM.py . [ 28%] test/test_PairedEndTrack.py .... [ 34%] test/test_Parser.py ... [ 39%] test/test_PeakIO.py . [ 40%] test/test_Pileup.py .......... [ 56%] test/test_Prob.py ................ [ 81%] test/test_Region.py ..... [ 89%] test/test_ScoreTrack.py .... [ 95%] test/test_SignalProcessing.py s. [ 98%] test/test_online.py . [100%] ======================== 63 passed, 1 skipped in 40.06s ======================== cd test && for PY3VER in 3.12 3.11; do \ export PATH=/build/reproducible-path/macs-3.0.1/.pybuild/cpython3_${PY3VER}_MACS3/scripts:$PATH \ && export PYTHONPATH=/build/reproducible-path/macs-3.0.1/.pybuild/cpython3_${PY3VER}_MACS3/build \ && ./cmdlinetest macs3.0.1-2-${PY3VER} ; done 1. callpeak 1.1 callpeak narrow 1.2 callpeak broad 1.3 callpeak on PE narrow/broad 2. pileup 3. filterdup 4. predictd 5. randsample 6. refinepeak 7. bdgcmp 8. bdgpeakcall 9. bdgbroadcall 10. bdgdiff 11. cmbreps 12. bdgopt 13. callvar 14. 50k contigs with buffersize 14.1 callpeak 14.2 filterdup 14.3 pileup 14.4 randsample 15. hmmratac 15.1 hmmratac load training regions from bedfile 15.2 hmmratac load hmm model file 16. search for errors or warnings in log files checking ../temp/macs3.0.1-2-3.12_run_50kcontigs/run_callpeak_50kcontigs.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_50kcontigs/run_filterdup_50kcontigs.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_50kcontigs/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_50kcontigs/run_randsample.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_bdgbroadcall/run_bdgbroadcall_w_prefix.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_bdgcmp/run_bdgcmp.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_bdgdiff/run_bdgdiff_w_o_file.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_bdgdiff/run_bdgdiff_w_prefix.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_bdgopt/run_bdgopt_max.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_bdgopt/run_bdgopt_min.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_bdgpeakcall/run_bdgpeakcall_cutoff.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_bdgpeakcall/run_bdgpeakcall_w_prefix.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_callpeak_broad/run_callpeak_broad.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow0.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow1.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow2.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow3.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow4.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow5.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_callpeak_narrow_revert/run_callpeak_narrow_revert.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_callpeak_pe_broad/run_callpeak_bampe_broad.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_callpeak_pe_broad/run_callpeak_bedpe_broad.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_callpeak_pe_narrow/run_callpeak_bampe_narrow.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_callvar/run_callvar_PE.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_cmbreps/run_cmbreps_fisher.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_cmbreps/run_cmbreps_max.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_cmbreps/run_cmbreps_mean.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_filterdup/run_filterdup.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_filterdup/run_filterdup_d.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_filterdup/run_filterdup_pe.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_filterdup/run_filterdup_pe_d.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_hmmratac/run_hmmratac.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_hmmratac/run_hmmratac_bedpe.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_hmmratac/run_hmmratac_load_hmm_model.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_hmmratac/run_hmmratac_load_training_regions.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_pileup/run_pileup_CTRL.bed.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_pileup/run_pileup_CTRLPE.bampe.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_pileup/run_pileup_CTRLPE.bedpe.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_pileup/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_pileup/run_pileup_ChIPPE.bampe.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_pileup/run_pileup_ChIPPE.bedpe.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_predictd/run_predictd.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_predictd/run_predictd_bampe.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_predictd/run_predictd_bedpe.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_randsample/run_randsample.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_randsample/run_randsample_bampe.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_randsample/run_randsample_bedpe.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_refinepeak/run_refinepeak_w_ofile.log... ... clear! checking ../temp/macs3.0.1-2-3.12_run_refinepeak/run_refinepeak_w_prefix.log... ... clear! 17. compare with standard outputs 16.1.1 checking 50kcontigs run_callpeak_50kcontigs_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.12_run_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak vs standard_results_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak ... success! Results are the same! 16.1.2 checking 50kcontigs run_callpeak_50kcontigs_summits.bed ... checking the files: ../temp/macs3.0.1-2-3.12_run_50kcontigs/run_callpeak_50kcontigs_summits.bed vs standard_results_50kcontigs/run_callpeak_50kcontigs_summits.bed ... success! Results are the same! 16.1.3 checking 50kcontigs run_filterdup_result.bed ... checking the files: ../temp/macs3.0.1-2-3.12_run_50kcontigs/run_filterdup_result.bed vs standard_results_50kcontigs/run_filterdup_result.bed ... success! Results are the same! 16.1.4 checking 50kcontigs run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_50kcontigs/run_pileup_ChIP.bed.bdg vs standard_results_50kcontigs/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.2.1 checking bdgbroadcall run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... checking the files: ../temp/macs3.0.1-2-3.12_run_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 vs standard_results_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... success! Results are the same! 16.3.1 checking bdgcmp run_bdgcmp_FE.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_bdgcmp/run_bdgcmp_FE.bdg vs standard_results_bdgcmp/run_bdgcmp_FE.bdg ... success! Results are the same! 16.3.2 checking bdgcmp run_bdgcmp_ppois.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_bdgcmp/run_bdgcmp_ppois.bdg vs standard_results_bdgcmp/run_bdgcmp_ppois.bdg ... success! Results are the same! 16.4.1 checking bdgdiff common.bed ... checking the files: ../temp/macs3.0.1-2-3.12_run_bdgdiff/common.bed vs standard_results_bdgdiff/common.bed ... success! Results are the same! 16.4.2 checking bdgdiff cond1.bed ... checking the files: ../temp/macs3.0.1-2-3.12_run_bdgdiff/cond1.bed vs standard_results_bdgdiff/cond1.bed ... success! Results are the same! 16.4.3 checking bdgdiff cond2.bed ... checking the files: ../temp/macs3.0.1-2-3.12_run_bdgdiff/cond2.bed vs standard_results_bdgdiff/cond2.bed ... success! Results are the same! 16.4.4 checking bdgdiff run_bdgdiff_prefix_c3.0_common.bed ... checking the files: ../temp/macs3.0.1-2-3.12_run_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed ... success! Results are the same! 16.4.5 checking bdgdiff run_bdgdiff_prefix_c3.0_cond1.bed ... checking the files: ../temp/macs3.0.1-2-3.12_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed ... success! Results are the same! 16.4.6 checking bdgdiff run_bdgdiff_prefix_c3.0_cond2.bed ... checking the files: ../temp/macs3.0.1-2-3.12_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed ... success! Results are the same! 16.5.1 checking bdgpeakcall run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.12_run_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak vs standard_results_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... success! Results are the same! 16.6.1 checking callpeak_broad run_callpeak_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_broad/run_callpeak_broad_control_lambda.bdg vs standard_results_callpeak_broad/run_callpeak_broad_control_lambda.bdg ... success! Results are the same! 16.6.2 checking callpeak_broad run_callpeak_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_broad/run_callpeak_broad_peaks.broadPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.broadPeak ... success! Results are the same! 16.6.3 checking callpeak_broad run_callpeak_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_broad/run_callpeak_broad_peaks.gappedPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.gappedPeak ... success! Results are the same! 16.6.4 checking callpeak_broad run_callpeak_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_broad/run_callpeak_broad_treat_pileup.bdg vs standard_results_callpeak_broad/run_callpeak_broad_treat_pileup.bdg ... success! Results are the same! 16.7.1 checking callpeak_narrow run_callpeak_narrow0_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg ... success! Results are the same! 16.7.2 checking callpeak_narrow run_callpeak_narrow0_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak ... success! Results are the same! 16.7.3 checking callpeak_narrow run_callpeak_narrow0_summits.bed ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow0_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow0_summits.bed ... success! Results are the same! 16.7.4 checking callpeak_narrow run_callpeak_narrow0_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg ... success! Results are the same! 16.7.5 checking callpeak_narrow run_callpeak_narrow1_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg ... success! Results are the same! 16.7.6 checking callpeak_narrow run_callpeak_narrow1_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak ... success! Results are the same! 16.7.7 checking callpeak_narrow run_callpeak_narrow1_summits.bed ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow1_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow1_summits.bed ... success! Results are the same! 16.7.8 checking callpeak_narrow run_callpeak_narrow1_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg ... success! Results are the same! 16.7.9 checking callpeak_narrow run_callpeak_narrow2_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg ... success! Results are the same! 16.7.10 checking callpeak_narrow run_callpeak_narrow2_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak ... success! Results are the same! 16.7.11 checking callpeak_narrow run_callpeak_narrow2_summits.bed ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow2_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow2_summits.bed ... success! Results are the same! 16.7.12 checking callpeak_narrow run_callpeak_narrow2_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg ... success! Results are the same! 16.7.13 checking callpeak_narrow run_callpeak_narrow3_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg ... success! Results are the same! 16.7.14 checking callpeak_narrow run_callpeak_narrow3_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak ... success! Results are the same! 16.7.15 checking callpeak_narrow run_callpeak_narrow3_summits.bed ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow3_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow3_summits.bed ... success! Results are the same! 16.7.16 checking callpeak_narrow run_callpeak_narrow3_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg ... success! Results are the same! 16.7.17 checking callpeak_narrow run_callpeak_narrow4_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg ... success! Results are the same! 16.7.18 checking callpeak_narrow run_callpeak_narrow4_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak ... success! Results are the same! 16.7.19 checking callpeak_narrow run_callpeak_narrow4_summits.bed ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow4_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow4_summits.bed ... success! Results are the same! 16.7.20 checking callpeak_narrow run_callpeak_narrow4_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg ... success! Results are the same! 16.7.21 checking callpeak_narrow run_callpeak_narrow5_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg ... success! Results are the same! 16.7.22 checking callpeak_narrow run_callpeak_narrow5_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak ... success! Results are the same! 16.7.23 checking callpeak_narrow run_callpeak_narrow5_summits.bed ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow5_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow5_summits.bed ... success! Results are the same! 16.7.24 checking callpeak_narrow run_callpeak_narrow5_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg ... success! Results are the same! 16.8.1 checking callpeak_narrow_revert run_callpeak_narrow_revert_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg ... success! Results are the same! 16.8.2 checking callpeak_narrow_revert run_callpeak_narrow_revert_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak ... success! Results are the same! 16.8.3 checking callpeak_narrow_revert run_callpeak_narrow_revert_summits.bed ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed ... success! Results are the same! 16.8.4 checking callpeak_narrow_revert run_callpeak_narrow_revert_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg ... success! Results are the same! 16.9.1 checking callpeak_pe_broad run_callpeak_bampe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg ... success! Results are the same! 16.9.2 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak ... success! Results are the same! 16.9.3 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.4 checking callpeak_pe_broad run_callpeak_bampe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg ... success! Results are the same! 16.9.5 checking callpeak_pe_broad run_callpeak_bedpe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg ... success! Results are the same! 16.9.6 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak ... success! Results are the same! 16.9.7 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.8 checking callpeak_pe_broad run_callpeak_bedpe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg ... success! Results are the same! 16.10.1 checking callpeak_pe_narrow run_callpeak_bampe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.2 checking callpeak_pe_narrow run_callpeak_bampe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.3 checking callpeak_pe_narrow run_callpeak_bampe_narrow_summits.bed ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed ... success! Results are the same! 16.10.4 checking callpeak_pe_narrow run_callpeak_bampe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.5 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.6 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.7 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_summits.bed ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed ... success! Results are the same! 16.10.8 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.9 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... success! Results are the same! 16.10.10 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... success! Results are the same! 16.10.11 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_summits.bed ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed ... success! Results are the same! 16.10.12 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... success! Results are the same! 16.11.1 checking cmbreps run_cmbreps_fisher.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_cmbreps/run_cmbreps_fisher.bdg vs standard_results_cmbreps/run_cmbreps_fisher.bdg ... success! Results are the same! 16.11.2 checking cmbreps run_cmbreps_max.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_cmbreps/run_cmbreps_max.bdg vs standard_results_cmbreps/run_cmbreps_max.bdg ... success! Results are the same! 16.11.3 checking cmbreps run_cmbreps_mean.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_cmbreps/run_cmbreps_mean.bdg vs standard_results_cmbreps/run_cmbreps_mean.bdg ... success! Results are the same! 16.12.1 checking filterdup run_filterdup_result.bed ... checking the files: ../temp/macs3.0.1-2-3.12_run_filterdup/run_filterdup_result.bed vs standard_results_filterdup/run_filterdup_result.bed ... success! Results are the same! 16.12.2 checking filterdup run_filterdup_result_pe.bedpe ... checking the files: ../temp/macs3.0.1-2-3.12_run_filterdup/run_filterdup_result_pe.bedpe vs standard_results_filterdup/run_filterdup_result_pe.bedpe ... success! Results are the same! 16.13.1 checking pileup run_pileup_CTRL.bed.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_pileup/run_pileup_CTRL.bed.bdg vs standard_results_pileup/run_pileup_CTRL.bed.bdg ... success! Results are the same! 16.13.2 checking pileup run_pileup_CTRLPE.bampe.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_pileup/run_pileup_CTRLPE.bampe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bampe.bdg ... success! Results are the same! 16.13.3 checking pileup run_pileup_CTRLPE.bedpe.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_pileup/run_pileup_CTRLPE.bedpe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bedpe.bdg ... success! Results are the same! 16.13.4 checking pileup run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_pileup/run_pileup_ChIP.bed.bdg vs standard_results_pileup/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.13.5 checking pileup run_pileup_ChIPPE.bampe.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_pileup/run_pileup_ChIPPE.bampe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bampe.bdg ... success! Results are the same! 16.13.6 checking pileup run_pileup_ChIPPE.bedpe.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_pileup/run_pileup_ChIPPE.bedpe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bedpe.bdg ... success! Results are the same! 16.14.1 checking refinepeak run_refinepeak_w_ofile.bed ... checking the files: ../temp/macs3.0.1-2-3.12_run_refinepeak/run_refinepeak_w_ofile.bed vs standard_results_refinepeak/run_refinepeak_w_ofile.bed ... success! Results are the same! 16.14.2 checking refinepeak run_refinepeak_w_prefix_refinepeak.bed ... checking the files: ../temp/macs3.0.1-2-3.12_run_refinepeak/run_refinepeak_w_prefix_refinepeak.bed vs standard_results_refinepeak/run_refinepeak_w_prefix_refinepeak.bed ... success! Results are the same! 16.15.1 checking bdgopt run_bdgopt_max.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_bdgopt/run_bdgopt_max.bdg vs standard_results_bdgopt/run_bdgopt_max.bdg ... success! Results are the same! 16.15.2 checking bdgopt run_bdgopt_min.bdg ... checking the files: ../temp/macs3.0.1-2-3.12_run_bdgopt/run_bdgopt_min.bdg vs standard_results_bdgopt/run_bdgopt_min.bdg ... success! Results are the same! 16.16.1 checking predictd run_predictd.txt ... checking the files: ../temp/macs3.0.1-2-3.12_run_predictd/run_predictd.txt vs standard_results_predictd/run_predictd.txt ... success! Results are the same! 16.16.2 checking predictd run_predictd_bampe.txt ... checking the files: ../temp/macs3.0.1-2-3.12_run_predictd/run_predictd_bampe.txt vs standard_results_predictd/run_predictd_bampe.txt ... success! Results are the same! 16.16.3 checking predictd run_predictd_bedpe.txt ... checking the files: ../temp/macs3.0.1-2-3.12_run_predictd/run_predictd_bedpe.txt vs standard_results_predictd/run_predictd_bedpe.txt ... success! Results are the same! 16.17.1 checking callvar PEsample.vcf ... checking the files: ../temp/macs3.0.1-2-3.12_run_callvar/PEsample.vcf vs standard_results_callvar/PEsample.vcf ... success! Results are the same! 16.18.1 checking hmmratac hmmratac_yeast500k_accessible_regions.gappedPeak ... checking the files: ../temp/macs3.0.1-2-3.12_run_hmmratac/hmmratac_yeast500k_accessible_regions.gappedPeak vs standard_results_hmmratac/hmmratac_yeast500k_accessible_regions.gappedPeak ... success! Results are the same! 16.18.2 checking hmmratac hmmratac_yeast500k_bedpe_accessible_regions.gappedPeak ... checking the files: ../temp/macs3.0.1-2-3.12_run_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.gappedPeak vs standard_results_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.gappedPeak ... success! Results are the same! 16.18.3 checking hmmratac hmmratac_yeast500k_load_hmm_model_accessible_regions.gappedPeak ... checking the files: ../temp/macs3.0.1-2-3.12_run_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.gappedPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.gappedPeak ... success! Results are the same! 16.18.4 checking hmmratac hmmratac_yeast500k_load_training_regions_accessible_regions.gappedPeak ... checking the files: ../temp/macs3.0.1-2-3.12_run_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.gappedPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.gappedPeak ... success! Results are the same! 18. brief speed test CPU time (mm:ss): 00:02:38 Max mem (KB): 252932 1. callpeak 1.1 callpeak narrow 1.2 callpeak broad 1.3 callpeak on PE narrow/broad 2. pileup 3. filterdup 4. predictd 5. randsample 6. refinepeak 7. bdgcmp 8. bdgpeakcall 9. bdgbroadcall 10. bdgdiff 11. cmbreps 12. bdgopt 13. callvar 14. 50k contigs with buffersize 14.1 callpeak 14.2 filterdup 14.3 pileup 14.4 randsample 15. hmmratac 15.1 hmmratac load training regions from bedfile 15.2 hmmratac load hmm model file 16. search for errors or warnings in log files checking ../temp/macs3.0.1-2-3.11_run_50kcontigs/run_callpeak_50kcontigs.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_50kcontigs/run_filterdup_50kcontigs.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_50kcontigs/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_50kcontigs/run_randsample.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_bdgbroadcall/run_bdgbroadcall_w_prefix.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_bdgcmp/run_bdgcmp.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_bdgdiff/run_bdgdiff_w_o_file.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_bdgdiff/run_bdgdiff_w_prefix.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_bdgopt/run_bdgopt_max.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_bdgopt/run_bdgopt_min.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_bdgpeakcall/run_bdgpeakcall_cutoff.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_bdgpeakcall/run_bdgpeakcall_w_prefix.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_callpeak_broad/run_callpeak_broad.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow0.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow1.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow2.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow3.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow4.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow5.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_callpeak_narrow_revert/run_callpeak_narrow_revert.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_callpeak_pe_broad/run_callpeak_bampe_broad.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_callpeak_pe_broad/run_callpeak_bedpe_broad.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_callpeak_pe_narrow/run_callpeak_bampe_narrow.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_callvar/run_callvar_PE.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_cmbreps/run_cmbreps_fisher.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_cmbreps/run_cmbreps_max.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_cmbreps/run_cmbreps_mean.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_filterdup/run_filterdup.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_filterdup/run_filterdup_d.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_filterdup/run_filterdup_pe.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_filterdup/run_filterdup_pe_d.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_hmmratac/run_hmmratac.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_hmmratac/run_hmmratac_bedpe.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_hmmratac/run_hmmratac_load_hmm_model.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_hmmratac/run_hmmratac_load_training_regions.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_pileup/run_pileup_CTRL.bed.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_pileup/run_pileup_CTRLPE.bampe.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_pileup/run_pileup_CTRLPE.bedpe.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_pileup/run_pileup_ChIP.bed.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_pileup/run_pileup_ChIPPE.bampe.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_pileup/run_pileup_ChIPPE.bedpe.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_predictd/run_predictd.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_predictd/run_predictd_bampe.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_predictd/run_predictd_bedpe.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_randsample/run_randsample.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_randsample/run_randsample_bampe.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_randsample/run_randsample_bedpe.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_refinepeak/run_refinepeak_w_ofile.log... ... clear! checking ../temp/macs3.0.1-2-3.11_run_refinepeak/run_refinepeak_w_prefix.log... ... clear! 17. compare with standard outputs 16.1.1 checking 50kcontigs run_callpeak_50kcontigs_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.11_run_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak vs standard_results_50kcontigs/run_callpeak_50kcontigs_peaks.narrowPeak ... success! Results are the same! 16.1.2 checking 50kcontigs run_callpeak_50kcontigs_summits.bed ... checking the files: ../temp/macs3.0.1-2-3.11_run_50kcontigs/run_callpeak_50kcontigs_summits.bed vs standard_results_50kcontigs/run_callpeak_50kcontigs_summits.bed ... success! Results are the same! 16.1.3 checking 50kcontigs run_filterdup_result.bed ... checking the files: ../temp/macs3.0.1-2-3.11_run_50kcontigs/run_filterdup_result.bed vs standard_results_50kcontigs/run_filterdup_result.bed ... success! Results are the same! 16.1.4 checking 50kcontigs run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_50kcontigs/run_pileup_ChIP.bed.bdg vs standard_results_50kcontigs/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.2.1 checking bdgbroadcall run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... checking the files: ../temp/macs3.0.1-2-3.11_run_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 vs standard_results_bdgbroadcall/run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... success! Results are the same! 16.3.1 checking bdgcmp run_bdgcmp_FE.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_bdgcmp/run_bdgcmp_FE.bdg vs standard_results_bdgcmp/run_bdgcmp_FE.bdg ... success! Results are the same! 16.3.2 checking bdgcmp run_bdgcmp_ppois.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_bdgcmp/run_bdgcmp_ppois.bdg vs standard_results_bdgcmp/run_bdgcmp_ppois.bdg ... success! Results are the same! 16.4.1 checking bdgdiff common.bed ... checking the files: ../temp/macs3.0.1-2-3.11_run_bdgdiff/common.bed vs standard_results_bdgdiff/common.bed ... success! Results are the same! 16.4.2 checking bdgdiff cond1.bed ... checking the files: ../temp/macs3.0.1-2-3.11_run_bdgdiff/cond1.bed vs standard_results_bdgdiff/cond1.bed ... success! Results are the same! 16.4.3 checking bdgdiff cond2.bed ... checking the files: ../temp/macs3.0.1-2-3.11_run_bdgdiff/cond2.bed vs standard_results_bdgdiff/cond2.bed ... success! Results are the same! 16.4.4 checking bdgdiff run_bdgdiff_prefix_c3.0_common.bed ... checking the files: ../temp/macs3.0.1-2-3.11_run_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_common.bed ... success! Results are the same! 16.4.5 checking bdgdiff run_bdgdiff_prefix_c3.0_cond1.bed ... checking the files: ../temp/macs3.0.1-2-3.11_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond1.bed ... success! Results are the same! 16.4.6 checking bdgdiff run_bdgdiff_prefix_c3.0_cond2.bed ... checking the files: ../temp/macs3.0.1-2-3.11_run_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed vs standard_results_bdgdiff/run_bdgdiff_prefix_c3.0_cond2.bed ... success! Results are the same! 16.5.1 checking bdgpeakcall run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.11_run_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak vs standard_results_bdgpeakcall/run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... success! Results are the same! 16.6.1 checking callpeak_broad run_callpeak_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_broad/run_callpeak_broad_control_lambda.bdg vs standard_results_callpeak_broad/run_callpeak_broad_control_lambda.bdg ... success! Results are the same! 16.6.2 checking callpeak_broad run_callpeak_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_broad/run_callpeak_broad_peaks.broadPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.broadPeak ... success! Results are the same! 16.6.3 checking callpeak_broad run_callpeak_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_broad/run_callpeak_broad_peaks.gappedPeak vs standard_results_callpeak_broad/run_callpeak_broad_peaks.gappedPeak ... success! Results are the same! 16.6.4 checking callpeak_broad run_callpeak_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_broad/run_callpeak_broad_treat_pileup.bdg vs standard_results_callpeak_broad/run_callpeak_broad_treat_pileup.bdg ... success! Results are the same! 16.7.1 checking callpeak_narrow run_callpeak_narrow0_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_control_lambda.bdg ... success! Results are the same! 16.7.2 checking callpeak_narrow run_callpeak_narrow0_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow0_peaks.narrowPeak ... success! Results are the same! 16.7.3 checking callpeak_narrow run_callpeak_narrow0_summits.bed ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow0_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow0_summits.bed ... success! Results are the same! 16.7.4 checking callpeak_narrow run_callpeak_narrow0_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow0_treat_pileup.bdg ... success! Results are the same! 16.7.5 checking callpeak_narrow run_callpeak_narrow1_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_control_lambda.bdg ... success! Results are the same! 16.7.6 checking callpeak_narrow run_callpeak_narrow1_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow1_peaks.narrowPeak ... success! Results are the same! 16.7.7 checking callpeak_narrow run_callpeak_narrow1_summits.bed ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow1_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow1_summits.bed ... success! Results are the same! 16.7.8 checking callpeak_narrow run_callpeak_narrow1_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow1_treat_pileup.bdg ... success! Results are the same! 16.7.9 checking callpeak_narrow run_callpeak_narrow2_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_control_lambda.bdg ... success! Results are the same! 16.7.10 checking callpeak_narrow run_callpeak_narrow2_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow2_peaks.narrowPeak ... success! Results are the same! 16.7.11 checking callpeak_narrow run_callpeak_narrow2_summits.bed ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow2_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow2_summits.bed ... success! Results are the same! 16.7.12 checking callpeak_narrow run_callpeak_narrow2_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow2_treat_pileup.bdg ... success! Results are the same! 16.7.13 checking callpeak_narrow run_callpeak_narrow3_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_control_lambda.bdg ... success! Results are the same! 16.7.14 checking callpeak_narrow run_callpeak_narrow3_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow3_peaks.narrowPeak ... success! Results are the same! 16.7.15 checking callpeak_narrow run_callpeak_narrow3_summits.bed ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow3_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow3_summits.bed ... success! Results are the same! 16.7.16 checking callpeak_narrow run_callpeak_narrow3_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow3_treat_pileup.bdg ... success! Results are the same! 16.7.17 checking callpeak_narrow run_callpeak_narrow4_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_control_lambda.bdg ... success! Results are the same! 16.7.18 checking callpeak_narrow run_callpeak_narrow4_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow4_peaks.narrowPeak ... success! Results are the same! 16.7.19 checking callpeak_narrow run_callpeak_narrow4_summits.bed ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow4_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow4_summits.bed ... success! Results are the same! 16.7.20 checking callpeak_narrow run_callpeak_narrow4_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow4_treat_pileup.bdg ... success! Results are the same! 16.7.21 checking callpeak_narrow run_callpeak_narrow5_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_control_lambda.bdg ... success! Results are the same! 16.7.22 checking callpeak_narrow run_callpeak_narrow5_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak vs standard_results_callpeak_narrow/run_callpeak_narrow5_peaks.narrowPeak ... success! Results are the same! 16.7.23 checking callpeak_narrow run_callpeak_narrow5_summits.bed ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow5_summits.bed vs standard_results_callpeak_narrow/run_callpeak_narrow5_summits.bed ... success! Results are the same! 16.7.24 checking callpeak_narrow run_callpeak_narrow5_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg vs standard_results_callpeak_narrow/run_callpeak_narrow5_treat_pileup.bdg ... success! Results are the same! 16.8.1 checking callpeak_narrow_revert run_callpeak_narrow_revert_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_control_lambda.bdg ... success! Results are the same! 16.8.2 checking callpeak_narrow_revert run_callpeak_narrow_revert_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_peaks.narrowPeak ... success! Results are the same! 16.8.3 checking callpeak_narrow_revert run_callpeak_narrow_revert_summits.bed ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_summits.bed ... success! Results are the same! 16.8.4 checking callpeak_narrow_revert run_callpeak_narrow_revert_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg vs standard_results_callpeak_narrow_revert/run_callpeak_narrow_revert_treat_pileup.bdg ... success! Results are the same! 16.9.1 checking callpeak_pe_broad run_callpeak_bampe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_control_lambda.bdg ... success! Results are the same! 16.9.2 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.broadPeak ... success! Results are the same! 16.9.3 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.4 checking callpeak_pe_broad run_callpeak_bampe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bampe_broad_treat_pileup.bdg ... success! Results are the same! 16.9.5 checking callpeak_pe_broad run_callpeak_bedpe_broad_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_control_lambda.bdg ... success! Results are the same! 16.9.6 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.broadPeak ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.broadPeak ... success! Results are the same! 16.9.7 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.gappedPeak ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_peaks.gappedPeak ... success! Results are the same! 16.9.8 checking callpeak_pe_broad run_callpeak_bedpe_broad_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg vs standard_results_callpeak_pe_broad/run_callpeak_bedpe_broad_treat_pileup.bdg ... success! Results are the same! 16.10.1 checking callpeak_pe_narrow run_callpeak_bampe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.2 checking callpeak_pe_narrow run_callpeak_bampe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.3 checking callpeak_pe_narrow run_callpeak_bampe_narrow_summits.bed ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_summits.bed ... success! Results are the same! 16.10.4 checking callpeak_pe_narrow run_callpeak_bampe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bampe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.5 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_control_lambda.bdg ... success! Results are the same! 16.10.6 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_peaks.narrowPeak ... success! Results are the same! 16.10.7 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_summits.bed ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_summits.bed ... success! Results are the same! 16.10.8 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_bedpe_narrow_treat_pileup.bdg ... success! Results are the same! 16.10.9 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... success! Results are the same! 16.10.10 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... success! Results are the same! 16.10.11 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_summits.bed ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_summits.bed ... success! Results are the same! 16.10.12 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg vs standard_results_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... success! Results are the same! 16.11.1 checking cmbreps run_cmbreps_fisher.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_cmbreps/run_cmbreps_fisher.bdg vs standard_results_cmbreps/run_cmbreps_fisher.bdg ... success! Results are the same! 16.11.2 checking cmbreps run_cmbreps_max.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_cmbreps/run_cmbreps_max.bdg vs standard_results_cmbreps/run_cmbreps_max.bdg ... success! Results are the same! 16.11.3 checking cmbreps run_cmbreps_mean.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_cmbreps/run_cmbreps_mean.bdg vs standard_results_cmbreps/run_cmbreps_mean.bdg ... success! Results are the same! 16.12.1 checking filterdup run_filterdup_result.bed ... checking the files: ../temp/macs3.0.1-2-3.11_run_filterdup/run_filterdup_result.bed vs standard_results_filterdup/run_filterdup_result.bed ... success! Results are the same! 16.12.2 checking filterdup run_filterdup_result_pe.bedpe ... checking the files: ../temp/macs3.0.1-2-3.11_run_filterdup/run_filterdup_result_pe.bedpe vs standard_results_filterdup/run_filterdup_result_pe.bedpe ... success! Results are the same! 16.13.1 checking pileup run_pileup_CTRL.bed.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_pileup/run_pileup_CTRL.bed.bdg vs standard_results_pileup/run_pileup_CTRL.bed.bdg ... success! Results are the same! 16.13.2 checking pileup run_pileup_CTRLPE.bampe.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_pileup/run_pileup_CTRLPE.bampe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bampe.bdg ... success! Results are the same! 16.13.3 checking pileup run_pileup_CTRLPE.bedpe.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_pileup/run_pileup_CTRLPE.bedpe.bdg vs standard_results_pileup/run_pileup_CTRLPE.bedpe.bdg ... success! Results are the same! 16.13.4 checking pileup run_pileup_ChIP.bed.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_pileup/run_pileup_ChIP.bed.bdg vs standard_results_pileup/run_pileup_ChIP.bed.bdg ... success! Results are the same! 16.13.5 checking pileup run_pileup_ChIPPE.bampe.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_pileup/run_pileup_ChIPPE.bampe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bampe.bdg ... success! Results are the same! 16.13.6 checking pileup run_pileup_ChIPPE.bedpe.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_pileup/run_pileup_ChIPPE.bedpe.bdg vs standard_results_pileup/run_pileup_ChIPPE.bedpe.bdg ... success! Results are the same! 16.14.1 checking refinepeak run_refinepeak_w_ofile.bed ... checking the files: ../temp/macs3.0.1-2-3.11_run_refinepeak/run_refinepeak_w_ofile.bed vs standard_results_refinepeak/run_refinepeak_w_ofile.bed ... success! Results are the same! 16.14.2 checking refinepeak run_refinepeak_w_prefix_refinepeak.bed ... checking the files: ../temp/macs3.0.1-2-3.11_run_refinepeak/run_refinepeak_w_prefix_refinepeak.bed vs standard_results_refinepeak/run_refinepeak_w_prefix_refinepeak.bed ... success! Results are the same! 16.15.1 checking bdgopt run_bdgopt_max.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_bdgopt/run_bdgopt_max.bdg vs standard_results_bdgopt/run_bdgopt_max.bdg ... success! Results are the same! 16.15.2 checking bdgopt run_bdgopt_min.bdg ... checking the files: ../temp/macs3.0.1-2-3.11_run_bdgopt/run_bdgopt_min.bdg vs standard_results_bdgopt/run_bdgopt_min.bdg ... success! Results are the same! 16.16.1 checking predictd run_predictd.txt ... checking the files: ../temp/macs3.0.1-2-3.11_run_predictd/run_predictd.txt vs standard_results_predictd/run_predictd.txt ... success! Results are the same! 16.16.2 checking predictd run_predictd_bampe.txt ... checking the files: ../temp/macs3.0.1-2-3.11_run_predictd/run_predictd_bampe.txt vs standard_results_predictd/run_predictd_bampe.txt ... success! Results are the same! 16.16.3 checking predictd run_predictd_bedpe.txt ... checking the files: ../temp/macs3.0.1-2-3.11_run_predictd/run_predictd_bedpe.txt vs standard_results_predictd/run_predictd_bedpe.txt ... success! Results are the same! 16.17.1 checking callvar PEsample.vcf ... checking the files: ../temp/macs3.0.1-2-3.11_run_callvar/PEsample.vcf vs standard_results_callvar/PEsample.vcf ... success! Results are the same! 16.18.1 checking hmmratac hmmratac_yeast500k_accessible_regions.gappedPeak ... checking the files: ../temp/macs3.0.1-2-3.11_run_hmmratac/hmmratac_yeast500k_accessible_regions.gappedPeak vs standard_results_hmmratac/hmmratac_yeast500k_accessible_regions.gappedPeak ... success! Results are the same! 16.18.2 checking hmmratac hmmratac_yeast500k_bedpe_accessible_regions.gappedPeak ... checking the files: ../temp/macs3.0.1-2-3.11_run_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.gappedPeak vs standard_results_hmmratac/hmmratac_yeast500k_bedpe_accessible_regions.gappedPeak ... success! Results are the same! 16.18.3 checking hmmratac hmmratac_yeast500k_load_hmm_model_accessible_regions.gappedPeak ... checking the files: ../temp/macs3.0.1-2-3.11_run_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.gappedPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_hmm_model_accessible_regions.gappedPeak ... success! Results are the same! 16.18.4 checking hmmratac hmmratac_yeast500k_load_training_regions_accessible_regions.gappedPeak ... checking the files: ../temp/macs3.0.1-2-3.11_run_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.gappedPeak vs standard_results_hmmratac/hmmratac_yeast500k_load_training_regions_accessible_regions.gappedPeak ... success! Results are the same! 18. brief speed test CPU time (mm:ss): 00:03:16 Max mem (KB): 190432 make[1]: Leaving directory '/build/reproducible-path/macs-3.0.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/macs/ -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir I: pybuild plugin_pyproject:178: Copying package built for python3.11 to destdir dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild debian/rules execute_before_dh_python3 make[1]: Entering directory '/build/reproducible-path/macs-3.0.1' dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/macs-3.0.1' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_3.0.1-2_i386.deb'. dpkg-deb: building package 'macs' in '../macs_3.0.1-2_i386.deb'. dpkg-genbuildinfo --build=binary -O../macs_3.0.1-2_i386.buildinfo dpkg-genchanges --build=binary -O../macs_3.0.1-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from macs-3.0.1/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/49257 and its subdirectories I: Current time: Sat Mar 30 02:03:17 -12 2024 I: pbuilder-time-stamp: 1711807397 Sat Mar 30 14:03:19 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Sat Mar 30 14:03:19 UTC 2024 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Sat Mar 30 14:28:06 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. Sat Mar 30 14:28:07 UTC 2024 I: macs_3.0.1-2_i386.changes: Format: 1.8 Date: Wed, 28 Feb 2024 12:39:52 +0100 Source: macs Binary: macs macs-dbgsym Architecture: i386 Version: 3.0.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: macs - Model-based Analysis of ChIP-Seq on short reads sequencers Changes: macs (3.0.1-2) unstable; urgency=medium . * d/rules: make use of dh_numpy3 to add the numpy ABI dependency. * d/patches/spelling: fix typos. * d/lintian-overrides: update to match change in warnings. Checksums-Sha1: 721cdc9222695ab7c18e45fb3ea1abbfc2c827ac 22808760 macs-dbgsym_3.0.1-2_i386.deb fe682f6ef949517e68fb83b3a712143aed0ca044 7622 macs_3.0.1-2_i386.buildinfo e307432acfd7638d0a836bda3644ee272e3017db 4525708 macs_3.0.1-2_i386.deb Checksums-Sha256: b07cebca8d80b1d7b8b25e5bea877108dea8145a1ca87318d22cf5ba07d48957 22808760 macs-dbgsym_3.0.1-2_i386.deb bde1790023bc0e785873f505df0fdd2f14c486d91b645f93bcd8e27a45e94154 7622 macs_3.0.1-2_i386.buildinfo 24fa81c51c0dca079cc65794686581ee467cbfb721bb03878d329a8d9d7db20b 4525708 macs_3.0.1-2_i386.deb Files: 355929cc841bd9141eb7f99f12d5355a 22808760 debug optional macs-dbgsym_3.0.1-2_i386.deb ce6719aa448aceb5d9b5e431d7e99b24 7622 science optional macs_3.0.1-2_i386.buildinfo 521ee88d1bc772e913a5dd629c25090f 4525708 science optional macs_3.0.1-2_i386.deb Sat Mar 30 14:28:08 UTC 2024 I: diffoscope 261 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_5-13592.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.zPTHTb8U/macs_3.0.1-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.zPTHTb8U/macs_3.0.1-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.zPTHTb8U/macs_3.0.1-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.zPTHTb8U/b1/macs_3.0.1-2_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.zPTHTb8U/b2/macs_3.0.1-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 1.167s) 1.167s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.596s) 0.596s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1.537s CPU time consumed: 1.522s Sat Mar 30 14:28:10 UTC 2024 I: diffoscope 261 found no differences in the changes files, and a .buildinfo file also exists. Sat Mar 30 14:28:10 UTC 2024 I: macs from trixie built successfully and reproducibly on i386. Sat Mar 30 14:28:12 UTC 2024 I: Submitting .buildinfo files to external archives: Sat Mar 30 14:28:12 UTC 2024 I: Submitting 12K b1/macs_3.0.1-2_i386.buildinfo.asc Sat Mar 30 14:28:12 UTC 2024 I: Submitting 12K b2/macs_3.0.1-2_i386.buildinfo.asc Sat Mar 30 14:28:14 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Mar 30 14:28:14 UTC 2024 I: Done submitting .buildinfo files. Sat Mar 30 14:28:14 UTC 2024 I: Removing signed macs_3.0.1-2_i386.buildinfo.asc files: removed './b1/macs_3.0.1-2_i386.buildinfo.asc' removed './b2/macs_3.0.1-2_i386.buildinfo.asc'