Wed Feb 19 15:17:40 UTC 2025  I: starting to build lmfit-py/trixie/i386 on jenkins on '2025-02-19 15:17'
Wed Feb 19 15:17:40 UTC 2025  I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_6/55819/console.log
Wed Feb 19 15:17:40 UTC 2025  I: Downloading source for trixie/lmfit-py=1.3.2-2
--2025-02-19 15:17:40--  http://deb.debian.org/debian/pool/main/l/lmfit-py/lmfit-py_1.3.2-2.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2702 (2.6K) [text/prs.lines.tag]
Saving to: ‘lmfit-py_1.3.2-2.dsc’

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2025-02-19 15:17:40 (409 MB/s) - ‘lmfit-py_1.3.2-2.dsc’ saved [2702/2702]

Wed Feb 19 15:17:40 UTC 2025  I: lmfit-py_1.3.2-2.dsc
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Hash: SHA512

Format: 3.0 (quilt)
Source: lmfit-py
Binary: python3-lmfit, python-lmfit-doc
Architecture: all
Version: 1.3.2-2
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Uploaders:  Picca Frédéric-Emmanuel <picca@debian.org>, Michael Hudson-Doyle <mwhudson@debian.org>,
Homepage: https://lmfit.github.io/lmfit-py/
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/science-team/lmfit-py
Vcs-Git: https://salsa.debian.org/science-team/lmfit-py.git
Testsuite: autopkgtest
Testsuite-Triggers: python3-all, python3-matplotlib, python3-pandas, python3-pytest, python3-scipy, python3-tk
Build-Depends: debhelper-compat (= 13), dh-python, dh-sequence-numpy3, dh-sequence-python3, dh-sequence-sphinxdoc <!nodoc>, pybuild-plugin-pyproject, python3-all, python3-asteval (>= 1.0~), python3-dill <!nocheck>, python3-ipython <!nodoc>, python3-nbsphinx <!nodoc>, python3-numpy (>= 1.19~), python3-pandas, python3-pytest <!nocheck>, python3-pytest-cov <!nocheck>, python3-scipy (>= 1.6~), python3-setuptools, python3-setuptools-scm, python3-sphinx <!nodoc>, python3-sphinx-gallery <!nodoc>, python3-sympy <!nodoc>, python3-uncertainties (>= 3.2.2~)
Package-List:
 python-lmfit-doc deb doc optional arch=all
 python3-lmfit deb python optional arch=all
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Files:
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Wed Feb 19 15:17:40 UTC 2025  I: Checking whether the package is not for us
Wed Feb 19 15:17:40 UTC 2025  I: Starting 1st build on remote node ionos6-i386.debian.net.
Wed Feb 19 15:17:40 UTC 2025  I: Preparing to do remote build '1' on ionos6-i386.debian.net.
Wed Feb 19 15:28:11 UTC 2025  I: Deleting $TMPDIR on ionos6-i386.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Tue Mar 24 09:40:43 -12 2026
I: pbuilder-time-stamp: 1774388443
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [lmfit-py_1.3.2-2.dsc]
I: copying [./lmfit-py_1.3.2.orig.tar.gz]
I: copying [./lmfit-py_1.3.2-2.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./lmfit-py_1.3.2-2.dsc: unsupported subcommand
dpkg-source: info: extracting lmfit-py in lmfit-py-1.3.2
dpkg-source: info: unpacking lmfit-py_1.3.2.orig.tar.gz
dpkg-source: info: unpacking lmfit-py_1.3.2-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying deactivate_test.patch
dpkg-source: info: applying 0004-jupyter_sphinx-is-not-yet-working-on-Debian.patch
dpkg-source: info: applying exclude_test_for_32bit.patch
dpkg-source: info: applying intersphinx.patch
dpkg-source: info: applying asteval-nameerror.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/85162/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='i386'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 '
  DISTRIBUTION='trixie'
  HOME='/root'
  HOST_ARCH='i386'
  IFS=' 	
  '
  INVOCATION_ID='7b5f0351163a46e092a248e4bfaddde6'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  LD_LIBRARY_PATH='/usr/lib/libeatmydata'
  LD_PRELOAD='libeatmydata.so'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='85162'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.MxhgKdRY/pbuilderrc_hhb9 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.MxhgKdRY/b1 --logfile b1/build.log lmfit-py_1.3.2-2.dsc'
  SUDO_GID='112'
  SUDO_UID='107'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://213.165.73.152:3128'
I: uname -a
  Linux ionos6-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Nov 22  2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/85162/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-python, dh-sequence-numpy3, dh-sequence-python3, dh-sequence-sphinxdoc, pybuild-plugin-pyproject, python3-all, python3-asteval (>= 1.0~), python3-dill, python3-ipython, python3-nbsphinx, python3-numpy (>= 1.19~), python3-pandas, python3-pytest, python3-pytest-cov, python3-scipy (>= 1.6~), python3-setuptools, python3-setuptools-scm, python3-sphinx, python3-sphinx-gallery, python3-sympy, python3-uncertainties (>= 3.2.2~)
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19795 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-python; however:
  Package dh-python is not installed.
 pbuilder-satisfydepends-dummy depends on dh-sequence-numpy3; however:
  Package dh-sequence-numpy3 is not installed.
 pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however:
  Package dh-sequence-python3 is not installed.
 pbuilder-satisfydepends-dummy depends on dh-sequence-sphinxdoc; however:
  Package dh-sequence-sphinxdoc is not installed.
 pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however:
  Package pybuild-plugin-pyproject is not installed.
 pbuilder-satisfydepends-dummy depends on python3-all; however:
  Package python3-all is not installed.
 pbuilder-satisfydepends-dummy depends on python3-asteval (>= 1.0~); however:
  Package python3-asteval is not installed.
 pbuilder-satisfydepends-dummy depends on python3-dill; however:
  Package python3-dill is not installed.
 pbuilder-satisfydepends-dummy depends on python3-ipython; however:
  Package python3-ipython is not installed.
 pbuilder-satisfydepends-dummy depends on python3-nbsphinx; however:
  Package python3-nbsphinx is not installed.
 pbuilder-satisfydepends-dummy depends on python3-numpy (>= 1.19~); however:
  Package python3-numpy is not installed.
 pbuilder-satisfydepends-dummy depends on python3-pandas; however:
  Package python3-pandas is not installed.
 pbuilder-satisfydepends-dummy depends on python3-pytest; however:
  Package python3-pytest is not installed.
 pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however:
  Package python3-pytest-cov is not installed.
 pbuilder-satisfydepends-dummy depends on python3-scipy (>= 1.6~); however:
  Package python3-scipy is not installed.
 pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
  Package python3-setuptools is not installed.
 pbuilder-satisfydepends-dummy depends on python3-setuptools-scm; however:
  Package python3-setuptools-scm is not installed.
 pbuilder-satisfydepends-dummy depends on python3-sphinx; however:
  Package python3-sphinx is not installed.
 pbuilder-satisfydepends-dummy depends on python3-sphinx-gallery; however:
  Package python3-sphinx-gallery is not installed.
 pbuilder-satisfydepends-dummy depends on python3-sympy; however:
  Package python3-sympy is not installed.
 pbuilder-satisfydepends-dummy depends on python3-uncertainties (>= 3.2.2~); however:
  Package python3-uncertainties is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnorm1t64{a} libnsl2{a} libopenjp2-7{a} libpgm-5.3-0t64{a} libpipeline1{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libsodium23{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} libzmq5{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} pybuild-plugin-pyproject{a} python-babel-localedata{a} python-matplotlib-data{a} python-tinycss2-common{a} python3{a} python3-alabaster{a} python3-all{a} python3-asteval{a} python3-asttokens{a} python3-attr{a} python3-autocommand{a} python3-babel{a} python3-bleach{a} python3-brotli{a} python3-bs4{a} python3-build{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-coverage{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-dill{a} python3-docutils{a} python3-executing{a} python3-fastjsonschema{a} python3-fonttools{a} python3-fs{a} python3-html5lib{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-ipython{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jedi{a} python3-jinja2{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-jupyter-client{a} python3-jupyter-core{a} python3-jupyterlab-pygments{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-matplotlib-inline{a} python3-minimal{a} python3-mistune{a} python3-more-itertools{a} python3-mpmath{a} python3-nbclient{a} python3-nbconvert{a} python3-nbformat{a} python3-nbsphinx{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pandocfilters{a} python3-parso{a} python3-pexpect{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-prompt-toolkit{a} python3-psutil{a} python3-ptyprocess{a} python3-pure-eval{a} python3-pygments{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytest-cov{a} python3-pytz{a} python3-referencing{a} python3-requests{a} python3-roman{a} python3-rpds-py{a} python3-scipy{a} python3-setuptools{a} python3-setuptools-scm{a} python3-snowballstemmer{a} python3-soupsieve{a} python3-sphinx{a} python3-sphinx-gallery{a} python3-stack-data{a} python3-sympy{a} python3-tinycss2{a} python3-tk{a} python3-toml{a} python3-tornado{a} python3-traitlets{a} python3-typeguard{a} python3-typeshed{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-uncertainties{a} python3-urllib3{a} python3-wcwidth{a} python3-webencodings{a} python3-wheel{a} python3-zipp{a} python3-zmq{a} python3.12{a} python3.12-minimal{a} python3.12-tk{a} python3.13{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} xml-core{a} 
The following packages are RECOMMENDED but will NOT be installed:
  curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx optipng pandoc python3-bottleneck python3-cssselect python3-fqdn python3-isoduration python3-json-pointer python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-rfc3339-validator python3-rfc3986-validator python3-rfc3987 python3-sphinxcontrib.bibtex python3-tables python3-uritemplate python3-webcolors shared-mime-info wget xdg-user-dirs 
0 packages upgraded, 241 newly installed, 0 to remove and 0 not upgraded.
Need to get 133 MB of archives. After unpacking 642 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.13-minimal i386 3.13.2-1 [859 kB]
Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB]
Get: 3 http://deb.debian.org/debian trixie/main i386 python3.13-minimal i386 3.13.2-1 [2266 kB]
Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.13.1-2 [27.0 kB]
Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2024b-6 [257 kB]
Get: 8 http://deb.debian.org/debian trixie/main i386 libffi8 i386 3.4.7-1 [21.4 kB]
Get: 9 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-6 [69.4 kB]
Get: 10 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-6 [173 kB]
Get: 11 http://deb.debian.org/debian trixie/main i386 libpython3.13-stdlib i386 3.13.2-1 [1985 kB]
Get: 12 http://deb.debian.org/debian trixie/main i386 python3.13 i386 3.13.2-1 [745 kB]
Get: 13 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.13.1-2 [9952 B]
Get: 14 http://deb.debian.org/debian trixie/main i386 python3 i386 3.13.1-2 [28.0 kB]
Get: 15 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.9-1 [816 kB]
Get: 16 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.9-1 [2238 kB]
Get: 17 http://deb.debian.org/debian trixie/main i386 sgml-base all 1.31 [15.4 kB]
Get: 18 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB]
Get: 19 http://deb.debian.org/debian trixie/main i386 openssl i386 3.4.0-2 [1427 kB]
Get: 20 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20241223 [164 kB]
Get: 21 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB]
Get: 22 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB]
Get: 23 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB]
Get: 24 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.23.1-1 [245 kB]
Get: 25 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB]
Get: 26 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB]
Get: 27 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-3 [96.2 kB]
Get: 28 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB]
Get: 29 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB]
Get: 30 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-5 [301 kB]
Get: 31 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB]
Get: 32 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 33 http://deb.debian.org/debian trixie/main i386 automake all 1:1.17-3 [862 kB]
Get: 34 http://deb.debian.org/debian trixie/main i386 autopoint all 0.23.1-1 [770 kB]
Get: 35 http://deb.debian.org/debian trixie/main i386 libtcl8.6 i386 8.6.16+dfsg-1 [1103 kB]
Get: 36 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB]
Get: 37 http://deb.debian.org/debian trixie/main i386 libpng16-16t64 i386 1.6.46-4 [292 kB]
Get: 38 http://deb.debian.org/debian trixie/main i386 libfreetype6 i386 2.13.3+dfsg-1 [464 kB]
Get: 39 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 40 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 41 http://deb.debian.org/debian trixie/main i386 fontconfig-config i386 2.15.0-2 [317 kB]
Get: 42 http://deb.debian.org/debian trixie/main i386 libfontconfig1 i386 2.15.0-2 [402 kB]
Get: 43 http://deb.debian.org/debian trixie/main i386 libxau6 i386 1:1.0.11-1 [20.7 kB]
Get: 44 http://deb.debian.org/debian trixie/main i386 libxdmcp6 i386 1:1.1.5-1 [28.2 kB]
Get: 45 http://deb.debian.org/debian trixie/main i386 libxcb1 i386 1.17.0-2+b1 [148 kB]
Get: 46 http://deb.debian.org/debian trixie/main i386 libx11-data all 2:1.8.10-2 [337 kB]
Get: 47 http://deb.debian.org/debian trixie/main i386 libx11-6 i386 2:1.8.10-2 [834 kB]
Get: 48 http://deb.debian.org/debian trixie/main i386 libxrender1 i386 1:0.9.10-1.1+b4 [28.8 kB]
Get: 49 http://deb.debian.org/debian trixie/main i386 libxft2 i386 2.3.6-1+b4 [55.3 kB]
Get: 50 http://deb.debian.org/debian trixie/main i386 libxext6 i386 2:1.3.4-1+b3 [52.5 kB]
Get: 51 http://deb.debian.org/debian trixie/main i386 x11-common all 1:7.7+24 [217 kB]
Get: 52 http://deb.debian.org/debian trixie/main i386 libxss1 i386 1:1.2.3-1+b3 [17.3 kB]
Get: 53 http://deb.debian.org/debian trixie/main i386 libtk8.6 i386 8.6.16-1 [834 kB]
Get: 54 http://deb.debian.org/debian trixie/main i386 tk8.6-blt2.5 i386 2.5.3+dfsg-7 [616 kB]
Get: 55 http://deb.debian.org/debian trixie/main i386 blt i386 2.5.3+dfsg-7 [6024 B]
Get: 56 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 57 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-3 [539 kB]
Get: 58 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 59 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 60 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 61 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 62 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB]
Get: 63 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB]
Get: 64 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB]
Get: 65 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB]
Get: 66 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB]
Get: 67 http://deb.debian.org/debian trixie/main i386 gettext i386 0.23.1-1 [1714 kB]
Get: 68 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 69 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 70 http://deb.debian.org/debian trixie/main i386 debhelper all 13.24.1 [920 kB]
Get: 71 http://deb.debian.org/debian trixie/main i386 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 72 http://deb.debian.org/debian trixie/main i386 python3-more-itertools all 10.6.0-1 [65.3 kB]
Get: 73 http://deb.debian.org/debian trixie/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 74 http://deb.debian.org/debian trixie/main i386 python3-typeguard all 4.4.1-1 [37.0 kB]
Get: 75 http://deb.debian.org/debian trixie/main i386 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 76 http://deb.debian.org/debian trixie/main i386 python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 77 http://deb.debian.org/debian trixie/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 78 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 75.6.0-1 [222 kB]
Get: 79 http://deb.debian.org/debian trixie/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 80 http://deb.debian.org/debian trixie/main i386 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 81 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 75.6.0-1 [720 kB]
Get: 82 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20250108 [113 kB]
Get: 83 http://deb.debian.org/debian trixie/main i386 xml-core all 0.19 [20.1 kB]
Get: 84 http://deb.debian.org/debian trixie/main i386 docutils-common all 0.21.2+dfsg-2 [128 kB]
Get: 85 http://deb.debian.org/debian trixie/main i386 fonts-lyx all 2.4.3-1 [190 kB]
Get: 86 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.1-2 [150 kB]
Get: 87 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.2-1 [24.3 kB]
Get: 88 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.23-1+b1 [48.4 kB]
Get: 89 http://deb.debian.org/debian trixie/main i386 libfribidi0 i386 1.0.16-1 [27.0 kB]
Get: 90 http://deb.debian.org/debian trixie/main i386 libgpg-error0 i386 1.51-3 [87.3 kB]
Get: 91 http://deb.debian.org/debian trixie/main i386 libgcrypt20 i386 1.11.0-7 [799 kB]
Get: 92 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14.2.0-16 [735 kB]
Get: 93 http://deb.debian.org/debian trixie/main i386 libglib2.0-0t64 i386 2.83.3-2 [1581 kB]
Get: 94 http://deb.debian.org/debian trixie/main i386 libgraphite2-3 i386 1.3.14-2+b1 [77.8 kB]
Get: 95 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-4 [35.0 kB]
Get: 96 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-4 [83.7 kB]
Get: 97 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-4 [9600 B]
Get: 98 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-4 [354 kB]
Get: 99 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-4 [149 kB]
Get: 100 http://deb.debian.org/debian trixie/main i386 libharfbuzz0b i386 10.2.0-1 [504 kB]
Get: 101 http://deb.debian.org/debian trixie/main i386 libimagequant0 i386 2.18.0-1+b2 [36.0 kB]
Get: 102 http://deb.debian.org/debian trixie/main i386 libjbig0 i386 2.1-6.1+b2 [32.2 kB]
Get: 103 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo i386 1:2.1.5-3+b1 [171 kB]
Get: 104 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 105 http://deb.debian.org/debian trixie/main i386 libjs-jquery-hotkeys all 0.2.0-1 [12.6 kB]
Get: 106 http://deb.debian.org/debian trixie/main i386 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B]
Get: 107 http://deb.debian.org/debian trixie/main i386 libjs-jquery-metadata all 12-4 [6532 B]
Get: 108 http://deb.debian.org/debian trixie/main i386 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-4 [184 kB]
Get: 109 http://deb.debian.org/debian trixie/main i386 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB]
Get: 110 http://deb.debian.org/debian trixie/main i386 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get: 111 http://deb.debian.org/debian trixie/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get: 112 http://deb.debian.org/debian trixie/main i386 libjs-sphinxdoc all 8.1.3-4 [30.4 kB]
Get: 113 http://deb.debian.org/debian trixie/main i386 libjson-perl all 4.10000-1 [87.5 kB]
Get: 114 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.1-2 [2198 kB]
Get: 115 http://deb.debian.org/debian trixie/main i386 liblbfgsb0 i386 3.0+dfsg.4-1+b2 [29.5 kB]
Get: 116 http://deb.debian.org/debian trixie/main i386 liblcms2-2 i386 2.16-2 [171 kB]
Get: 117 http://deb.debian.org/debian trixie/main i386 liblerc4 i386 4.0.0+ds-5 [191 kB]
Get: 118 http://deb.debian.org/debian trixie/main i386 libnorm1t64 i386 1.5.9+dfsg-3.1+b2 [239 kB]
Get: 119 http://deb.debian.org/debian trixie/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 120 http://deb.debian.org/debian trixie/main i386 libtirpc3t64 i386 1.3.4+ds-1.3+b1 [90.5 kB]
Get: 121 http://deb.debian.org/debian trixie/main i386 libnsl2 i386 1.3.0-3+b3 [42.7 kB]
Get: 122 http://deb.debian.org/debian trixie/main i386 libopenjp2-7 i386 2.5.3-1 [215 kB]
Get: 123 http://deb.debian.org/debian trixie/main i386 libpgm-5.3-0t64 i386 5.3.128~dfsg-2.1+b1 [169 kB]
Get: 124 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.9-1 [1972 kB]
Get: 125 http://deb.debian.org/debian trixie/main i386 libqhull-r8.0 i386 2020.2-6+b2 [259 kB]
Get: 126 http://deb.debian.org/debian trixie/main i386 libraqm0 i386 0.10.2-1 [14.6 kB]
Get: 127 http://deb.debian.org/debian trixie/main i386 libsharpyuv0 i386 1.5.0-0.1 [115 kB]
Get: 128 http://deb.debian.org/debian trixie/main i386 libsodium23 i386 1.0.18-1+b2 [186 kB]
Get: 129 http://deb.debian.org/debian trixie/main i386 libwebp7 i386 1.5.0-0.1 [329 kB]
Get: 130 http://deb.debian.org/debian trixie/main i386 libtiff6 i386 4.5.1+git230720-5 [339 kB]
Get: 131 http://deb.debian.org/debian trixie/main i386 libwebpdemux2 i386 1.5.0-0.1 [114 kB]
Get: 132 http://deb.debian.org/debian trixie/main i386 libwebpmux3 i386 1.5.0-0.1 [127 kB]
Get: 133 http://deb.debian.org/debian trixie/main i386 libxslt1.1 i386 1.1.35-1.1+b1 [243 kB]
Get: 134 http://deb.debian.org/debian trixie/main i386 libzmq5 i386 4.3.5-1+b3 [308 kB]
Get: 135 http://deb.debian.org/debian trixie/main i386 python3-packaging all 24.2-1 [55.3 kB]
Get: 136 http://deb.debian.org/debian trixie/main i386 python3-pyproject-hooks all 1.2.0-1 [11.7 kB]
Get: 137 http://deb.debian.org/debian trixie/main i386 python3-toml all 0.10.2-1 [16.2 kB]
Get: 138 http://deb.debian.org/debian trixie/main i386 python3-wheel all 0.45.1-1 [56.7 kB]
Get: 139 http://deb.debian.org/debian trixie/main i386 python3-build all 1.2.2-1 [36.0 kB]
Get: 140 http://deb.debian.org/debian trixie/main i386 python3-installer all 0.7.0+dfsg1-3 [18.6 kB]
Get: 141 http://deb.debian.org/debian trixie/main i386 pybuild-plugin-pyproject all 6.20250108 [11.6 kB]
Get: 142 http://deb.debian.org/debian trixie/main i386 python-babel-localedata all 2.17.0-1 [6050 kB]
Get: 143 http://deb.debian.org/debian trixie/main i386 python-matplotlib-data all 3.8.3-3 [2731 kB]
Get: 144 http://deb.debian.org/debian trixie/main i386 python-tinycss2-common all 1.4.0-1 [44.8 kB]
Get: 145 http://deb.debian.org/debian trixie/main i386 python3-alabaster all 0.7.16-0.1 [27.9 kB]
Get: 146 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.9-1 [681 kB]
Get: 147 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.13.1-2 [1052 B]
Get: 148 http://deb.debian.org/debian trixie/main i386 python3-asteval all 1.0.6-2 [22.0 kB]
Get: 149 http://deb.debian.org/debian trixie/main i386 python3-asttokens all 3.0.0-1 [20.1 kB]
Get: 150 http://deb.debian.org/debian trixie/main i386 python3-attr all 25.1.0-1 [68.7 kB]
Get: 151 http://deb.debian.org/debian trixie/main i386 python3-babel all 2.17.0-1 [117 kB]
Get: 152 http://deb.debian.org/debian trixie/main i386 python3-webencodings all 0.5.1-5 [11.1 kB]
Get: 153 http://deb.debian.org/debian trixie/main i386 python3-html5lib all 1.2-1 [92.2 kB]
Get: 154 http://deb.debian.org/debian trixie/main i386 python3-bleach all 6.2.0-1 [51.2 kB]
Get: 155 http://deb.debian.org/debian trixie/main i386 python3-brotli i386 1.1.0-2+b6 [319 kB]
Get: 156 http://deb.debian.org/debian trixie/main i386 python3-soupsieve all 2.6-1 [38.3 kB]
Get: 157 http://deb.debian.org/debian trixie/main i386 python3-bs4 all 4.13.3-1 [166 kB]
Get: 158 http://deb.debian.org/debian trixie/main i386 python3-certifi all 2025.1.31+ds-1 [9652 B]
Get: 159 http://deb.debian.org/debian trixie/main i386 python3-cffi-backend i386 1.17.1-2+b1 [95.5 kB]
Get: 160 http://deb.debian.org/debian trixie/main i386 python3-chardet all 5.2.0+dfsg-2 [108 kB]
Get: 161 http://deb.debian.org/debian trixie/main i386 python3-charset-normalizer i386 3.4.0-1+b1 [139 kB]
Get: 162 http://deb.debian.org/debian trixie/main i386 python3-numpy i386 1:1.26.4+ds-13 [4751 kB]
Get: 163 http://deb.debian.org/debian trixie/main i386 python3-contourpy i386 1.3.1-1 [271 kB]
Get: 164 http://deb.debian.org/debian trixie/main i386 python3-coverage i386 7.6.0+dfsg1-2+b1 [177 kB]
Get: 165 http://deb.debian.org/debian trixie/main i386 python3-cycler all 0.12.1-1 [9496 B]
Get: 166 http://deb.debian.org/debian trixie/main i386 python3-dateutil all 2.9.0-3 [79.3 kB]
Get: 167 http://deb.debian.org/debian trixie/main i386 python3-decorator all 5.1.1-5 [15.1 kB]
Get: 168 http://deb.debian.org/debian trixie/main i386 python3-defusedxml all 0.7.1-3 [43.4 kB]
Get: 169 http://deb.debian.org/debian trixie/main i386 python3-dill all 0.3.9-1 [83.5 kB]
Get: 170 http://deb.debian.org/debian trixie/main i386 python3-roman all 5.0-1 [10.6 kB]
Get: 171 http://deb.debian.org/debian trixie/main i386 python3-docutils all 0.21.2+dfsg-2 [403 kB]
Get: 172 http://deb.debian.org/debian trixie/main i386 python3-executing all 2.2.0-0.1 [24.5 kB]
Get: 173 http://deb.debian.org/debian trixie/main i386 python3-fastjsonschema all 2.21.1-1 [22.4 kB]
Get: 174 http://deb.debian.org/debian trixie/main i386 python3-pytz all 2025.1-3 [150 kB]
Get: 175 http://deb.debian.org/debian trixie/main i386 python3-tz all 2025.1-3 [4004 B]
Get: 176 http://deb.debian.org/debian trixie/main i386 python3-platformdirs all 4.3.6-1 [16.6 kB]
Get: 177 http://deb.debian.org/debian trixie/main i386 python3-fs all 2.4.16-6 [95.1 kB]
Get: 178 http://deb.debian.org/debian trixie/main i386 python3-lxml i386 5.3.1-1 [1587 kB]
Get: 179 http://deb.debian.org/debian trixie/main i386 python3-lz4 i386 4.4.0+dfsg-1 [25.5 kB]
Get: 180 http://deb.debian.org/debian trixie/main i386 python3-scipy i386 1.14.1-4 [20.1 MB]
Get: 181 http://deb.debian.org/debian trixie/main i386 python3-mpmath all 1.3.0-1 [419 kB]
Get: 182 http://deb.debian.org/debian trixie/main i386 python3-sympy all 1.13.3-1 [4147 kB]
Get: 183 http://deb.debian.org/debian trixie/main i386 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB]
Get: 184 http://deb.debian.org/debian trixie/main i386 unicode-data all 15.1.0-1 [8547 kB]
Get: 185 http://deb.debian.org/debian trixie/main i386 python3-fonttools i386 4.55.3-2 [1591 kB]
Get: 186 http://deb.debian.org/debian trixie/main i386 python3-idna all 3.10-1 [42.0 kB]
Get: 187 http://deb.debian.org/debian trixie/main i386 python3-imagesize all 1.4.1-1 [6688 B]
Get: 188 http://deb.debian.org/debian trixie/main i386 python3-iniconfig all 1.1.1-2 [6396 B]
Get: 189 http://deb.debian.org/debian trixie/main i386 python3-parso all 0.8.4-1 [67.8 kB]
Get: 190 http://deb.debian.org/debian trixie/main i386 python3-typeshed all 0.0~git20241223.ea91db2-1 [1530 kB]
Get: 191 http://deb.debian.org/debian trixie/main i386 python3-jedi all 0.19.1+ds1-1 [691 kB]
Get: 192 http://deb.debian.org/debian trixie/main i386 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB]
Get: 193 http://deb.debian.org/debian trixie/main i386 python3-matplotlib-inline all 0.1.6-2 [8652 B]
Get: 194 http://deb.debian.org/debian trixie/main i386 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB]
Get: 195 http://deb.debian.org/debian trixie/main i386 python3-prompt-toolkit all 3.0.50-1 [278 kB]
Get: 196 http://deb.debian.org/debian trixie/main i386 python3-pygments all 2.18.0+dfsg-2 [836 kB]
Get: 197 http://deb.debian.org/debian trixie/main i386 python3-pure-eval all 0.2.3-1 [11.2 kB]
Get: 198 http://deb.debian.org/debian trixie/main i386 python3-stack-data all 0.6.3-1 [21.6 kB]
Get: 199 http://deb.debian.org/debian trixie/main i386 python3-ptyprocess all 0.7.0-6 [14.5 kB]
Get: 200 http://deb.debian.org/debian trixie/main i386 python3-pexpect all 4.9-3 [55.6 kB]
Get: 201 http://deb.debian.org/debian trixie/main i386 python3-ipython all 8.30.0-2 [568 kB]
Get: 202 http://deb.debian.org/debian trixie/main i386 python3-markupsafe i386 2.1.5-1+b2 [13.9 kB]
Get: 203 http://deb.debian.org/debian trixie/main i386 python3-jinja2 all 3.1.5-2 [107 kB]
Get: 204 http://deb.debian.org/debian trixie/main i386 python3-rpds-py i386 0.21.0-2 [313 kB]
Get: 205 http://deb.debian.org/debian trixie/main i386 python3-referencing all 0.35.1-2 [23.5 kB]
Get: 206 http://deb.debian.org/debian trixie/main i386 python3-jsonschema-specifications all 2023.12.1-2 [9020 B]
Get: 207 http://deb.debian.org/debian trixie/main i386 python3-jsonschema all 4.19.2-6 [71.4 kB]
Get: 208 http://deb.debian.org/debian trixie/main i386 python3-jupyter-core all 5.7.2-5 [35.3 kB]
Get: 209 http://deb.debian.org/debian trixie/main i386 python3-psutil i386 5.9.8-2 [226 kB]
Get: 210 http://deb.debian.org/debian trixie/main i386 python3-tornado i386 6.4.2-1 [349 kB]
Get: 211 http://deb.debian.org/debian trixie/main i386 python3-zmq i386 26.2.1-1 [210 kB]
Get: 212 http://deb.debian.org/debian trixie/main i386 python3-jupyter-client all 8.6.3-2 [92.4 kB]
Get: 213 http://deb.debian.org/debian trixie/main i386 python3-jupyterlab-pygments all 0.2.2-3 [6096 B]
Get: 214 http://deb.debian.org/debian trixie/main i386 python3-kiwisolver i386 1.4.7-3 [83.3 kB]
Get: 215 http://deb.debian.org/debian trixie/main i386 python3-pil i386 11.1.0-5 [535 kB]
Get: 216 http://deb.debian.org/debian trixie/main i386 python3.12-tk i386 3.12.9-1 [114 kB]
Get: 217 http://deb.debian.org/debian trixie/main i386 python3.13-tk i386 3.13.2-1 [104 kB]
Get: 218 http://deb.debian.org/debian trixie/main i386 python3-tk i386 3.13.1-1 [9464 B]
Get: 219 http://deb.debian.org/debian trixie/main i386 python3-pil.imagetk i386 11.1.0-5 [81.8 kB]
Get: 220 http://deb.debian.org/debian trixie/main i386 python3-pyparsing all 3.1.2-1 [146 kB]
Get: 221 http://deb.debian.org/debian trixie/main i386 python3-matplotlib i386 3.8.3-3+b3 [5658 kB]
Get: 222 http://deb.debian.org/debian trixie/main i386 python3-mistune all 3.0.2-2 [33.2 kB]
Get: 223 http://deb.debian.org/debian trixie/main i386 python3-nbformat all 5.9.1-1 [45.1 kB]
Get: 224 http://deb.debian.org/debian trixie/main i386 python3-nbclient all 0.8.0-2 [62.2 kB]
Get: 225 http://deb.debian.org/debian trixie/main i386 python3-tinycss2 all 1.4.0-1 [24.9 kB]
Get: 226 http://deb.debian.org/debian trixie/main i386 python3-pandocfilters all 1.5.1-1 [23.7 kB]
Get: 227 http://deb.debian.org/debian trixie/main i386 python3-nbconvert all 7.16.6-1 [160 kB]
Get: 228 http://deb.debian.org/debian trixie/main i386 sphinx-common all 8.1.3-4 [616 kB]
Get: 229 http://deb.debian.org/debian trixie/main i386 python3-urllib3 all 2.3.0-1 [114 kB]
Get: 230 http://deb.debian.org/debian trixie/main i386 python3-requests all 2.32.3+dfsg-1 [71.9 kB]
Get: 231 http://deb.debian.org/debian trixie/main i386 python3-snowballstemmer all 2.2.0-4 [58.0 kB]
Get: 232 http://deb.debian.org/debian trixie/main i386 python3-sphinx all 8.1.3-4 [468 kB]
Get: 233 http://deb.debian.org/debian trixie/main i386 python3-nbsphinx all 0.9.5+ds-1 [39.9 kB]
Get: 234 http://deb.debian.org/debian trixie/main i386 python3-pandas-lib i386 2.2.3+dfsg-8 [6848 kB]
Get: 235 http://deb.debian.org/debian trixie/main i386 python3-pandas all 2.2.3+dfsg-8 [3097 kB]
Get: 236 http://deb.debian.org/debian trixie/main i386 python3-pluggy all 1.5.0-1 [26.9 kB]
Get: 237 http://deb.debian.org/debian trixie/main i386 python3-pytest all 8.3.4-1 [250 kB]
Get: 238 http://deb.debian.org/debian trixie/main i386 python3-pytest-cov all 5.0.0-1 [26.8 kB]
Get: 239 http://deb.debian.org/debian trixie/main i386 python3-setuptools-scm all 8.1.0-1 [40.5 kB]
Get: 240 http://deb.debian.org/debian trixie/main i386 python3-sphinx-gallery all 0.17.1-1 [401 kB]
Get: 241 http://deb.debian.org/debian trixie/main i386 python3-uncertainties all 3.2.2-1 [54.7 kB]
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 -> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/lmfit-py-1.3.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../lmfit-py_1.3.2-2_source.changes
dpkg-buildpackage: info: source package lmfit-py
dpkg-buildpackage: info: source version 1.3.2-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Stuart Prescott <stuart@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
 debian/rules clean
dh clean --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
	pybuild --clean -i python{version} -p "3.12 3.13"
	rm -rf .pybuild/
	find . -name \*.pyc -exec rm {} \;
   dh_autoreconf_clean -O--buildsystem=pybuild
   debian/rules override_dh_clean
make[1]: Entering directory '/build/reproducible-path/lmfit-py-1.3.2'
find . -name "*.pickle" -delete
rm -rf doc/examples
if [ -f lmfit/version.py.orig ] ; then mv lmfit/version.py.orig lmfit/version.py ; fi
dh_clean
	rm -f debian/debhelper-build-stamp
	rm -rf debian/.debhelper/
	rm -f -- debian/python3-lmfit.substvars debian/python-lmfit-doc.substvars debian/files
	rm -fr -- debian/python3-lmfit/ debian/tmp/ debian/python-lmfit-doc/
	find .  \( \( \
		\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
	        \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
		\) -exec rm -f {} + \) -o \
		\( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \)
make[1]: Leaving directory '/build/reproducible-path/lmfit-py-1.3.2'
 debian/rules binary
dh binary --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/reproducible-path/lmfit-py-1.3.2'
cp -a lmfit/version.py lmfit/version.py.orig
dh_auto_configure
	pybuild --configure -i python{version} -p "3.12 3.13"
make[1]: Leaving directory '/build/reproducible-path/lmfit-py-1.3.2'
   dh_auto_build -O--buildsystem=pybuild
	pybuild --build -i python{version} -p "3.12 3.13"
I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module
I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.12_lmfit  
* Building wheel...
running bdist_wheel
running build
running build_py
creating build/lib/lmfit
copying lmfit/lineshapes.py -> build/lib/lmfit
copying lmfit/_ampgo.py -> build/lib/lmfit
copying lmfit/printfuncs.py -> build/lib/lmfit
copying lmfit/model.py -> build/lib/lmfit
copying lmfit/confidence.py -> build/lib/lmfit
copying lmfit/version.py -> build/lib/lmfit
copying lmfit/models.py -> build/lib/lmfit
copying lmfit/minimizer.py -> build/lib/lmfit
copying lmfit/__init__.py -> build/lib/lmfit
copying lmfit/jsonutils.py -> build/lib/lmfit
copying lmfit/parameter.py -> build/lib/lmfit
running egg_info
writing lmfit.egg-info/PKG-INFO
writing dependency_links to lmfit.egg-info/dependency_links.txt
writing requirements to lmfit.egg-info/requires.txt
writing top-level names to lmfit.egg-info/top_level.txt
reading manifest file 'lmfit.egg-info/SOURCES.txt'
adding license file 'LICENSE'
adding license file 'AUTHORS.txt'
writing manifest file 'lmfit.egg-info/SOURCES.txt'
installing to build/bdist.linux-i686/wheel
running install
running install_lib
creating build/bdist.linux-i686/wheel
creating build/bdist.linux-i686/wheel/lmfit
copying build/lib/lmfit/lineshapes.py -> build/bdist.linux-i686/wheel/./lmfit
copying build/lib/lmfit/_ampgo.py -> build/bdist.linux-i686/wheel/./lmfit
copying build/lib/lmfit/printfuncs.py -> build/bdist.linux-i686/wheel/./lmfit
copying build/lib/lmfit/model.py -> build/bdist.linux-i686/wheel/./lmfit
copying build/lib/lmfit/confidence.py -> build/bdist.linux-i686/wheel/./lmfit
copying build/lib/lmfit/version.py -> build/bdist.linux-i686/wheel/./lmfit
copying build/lib/lmfit/models.py -> build/bdist.linux-i686/wheel/./lmfit
copying build/lib/lmfit/minimizer.py -> build/bdist.linux-i686/wheel/./lmfit
copying build/lib/lmfit/__init__.py -> build/bdist.linux-i686/wheel/./lmfit
copying build/lib/lmfit/jsonutils.py -> build/bdist.linux-i686/wheel/./lmfit
copying build/lib/lmfit/parameter.py -> build/bdist.linux-i686/wheel/./lmfit
running install_egg_info
Copying lmfit.egg-info to build/bdist.linux-i686/wheel/./lmfit-1.3.2.egg-info
running install_scripts
creating build/bdist.linux-i686/wheel/lmfit-1.3.2.dist-info/WHEEL
creating '/build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.12_lmfit/.tmp-n9gmeklz/lmfit-1.3.2-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it
adding 'lmfit/__init__.py'
adding 'lmfit/_ampgo.py'
adding 'lmfit/confidence.py'
adding 'lmfit/jsonutils.py'
adding 'lmfit/lineshapes.py'
adding 'lmfit/minimizer.py'
adding 'lmfit/model.py'
adding 'lmfit/models.py'
adding 'lmfit/parameter.py'
adding 'lmfit/printfuncs.py'
adding 'lmfit/version.py'
adding 'lmfit-1.3.2.dist-info/AUTHORS.txt'
adding 'lmfit-1.3.2.dist-info/LICENSE'
adding 'lmfit-1.3.2.dist-info/METADATA'
adding 'lmfit-1.3.2.dist-info/WHEEL'
adding 'lmfit-1.3.2.dist-info/top_level.txt'
adding 'lmfit-1.3.2.dist-info/RECORD'
removing build/bdist.linux-i686/wheel
Successfully built lmfit-1.3.2-py3-none-any.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit  
* Building wheel...
running bdist_wheel
running build
running build_py
copying lmfit/version.py -> build/lib/lmfit
running egg_info
writing lmfit.egg-info/PKG-INFO
writing dependency_links to lmfit.egg-info/dependency_links.txt
writing requirements to lmfit.egg-info/requires.txt
writing top-level names to lmfit.egg-info/top_level.txt
reading manifest file 'lmfit.egg-info/SOURCES.txt'
adding license file 'LICENSE'
adding license file 'AUTHORS.txt'
writing manifest file 'lmfit.egg-info/SOURCES.txt'
installing to build/bdist.linux-i686/wheel
running install
running install_lib
creating build/bdist.linux-i686/wheel
creating build/bdist.linux-i686/wheel/lmfit
copying build/lib/lmfit/lineshapes.py -> build/bdist.linux-i686/wheel/./lmfit
copying build/lib/lmfit/_ampgo.py -> build/bdist.linux-i686/wheel/./lmfit
copying build/lib/lmfit/printfuncs.py -> build/bdist.linux-i686/wheel/./lmfit
copying build/lib/lmfit/model.py -> build/bdist.linux-i686/wheel/./lmfit
copying build/lib/lmfit/confidence.py -> build/bdist.linux-i686/wheel/./lmfit
copying build/lib/lmfit/version.py -> build/bdist.linux-i686/wheel/./lmfit
copying build/lib/lmfit/models.py -> build/bdist.linux-i686/wheel/./lmfit
copying build/lib/lmfit/minimizer.py -> build/bdist.linux-i686/wheel/./lmfit
copying build/lib/lmfit/__init__.py -> build/bdist.linux-i686/wheel/./lmfit
copying build/lib/lmfit/jsonutils.py -> build/bdist.linux-i686/wheel/./lmfit
copying build/lib/lmfit/parameter.py -> build/bdist.linux-i686/wheel/./lmfit
running install_egg_info
Copying lmfit.egg-info to build/bdist.linux-i686/wheel/./lmfit-1.3.2.egg-info
running install_scripts
creating build/bdist.linux-i686/wheel/lmfit-1.3.2.dist-info/WHEEL
creating '/build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/.tmp-86i9ew58/lmfit-1.3.2-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it
adding 'lmfit/__init__.py'
adding 'lmfit/_ampgo.py'
adding 'lmfit/confidence.py'
adding 'lmfit/jsonutils.py'
adding 'lmfit/lineshapes.py'
adding 'lmfit/minimizer.py'
adding 'lmfit/model.py'
adding 'lmfit/models.py'
adding 'lmfit/parameter.py'
adding 'lmfit/printfuncs.py'
adding 'lmfit/version.py'
adding 'lmfit-1.3.2.dist-info/AUTHORS.txt'
adding 'lmfit-1.3.2.dist-info/LICENSE'
adding 'lmfit-1.3.2.dist-info/METADATA'
adding 'lmfit-1.3.2.dist-info/WHEEL'
adding 'lmfit-1.3.2.dist-info/top_level.txt'
adding 'lmfit-1.3.2.dist-info/RECORD'
removing build/bdist.linux-i686/wheel
Successfully built lmfit-1.3.2-py3-none-any.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module
   dh_auto_test -O--buildsystem=pybuild
	pybuild --test --test-pytest -i python{version} -p "3.12 3.13"
I: pybuild pybuild:308: cp -r NIST_STRD examples /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.12_lmfit/build
I: pybuild base:311: cd /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.12_lmfit/build; python3.12 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0
rootdir: /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.12_lmfit/build
configfile: pyproject.toml
plugins: typeguard-4.4.1, cov-5.0.0
collected 662 items

tests/test_1variable.py .                                                [  0%]
tests/test_NIST_Strd.py ...........................                      [  4%]
tests/test_algebraic_constraint.py ....                                  [  4%]
tests/test_ampgo.py ............                                         [  6%]
tests/test_basicfit.py .                                                 [  6%]
tests/test_basinhopping.py .....                                         [  7%]
tests/test_bounded_jacobian.py ..                                        [  7%]
tests/test_bounds.py .                                                   [  8%]
tests/test_brute.py ............                                         [  9%]
tests/test_builtin_models.py .......                                     [ 10%]
tests/test_confidence.py .............                                   [ 12%]
tests/test_covariance_matrix.py ..ssssssss.                              [ 14%]
tests/test_custom_independentvar.py .                                    [ 14%]
tests/test_default_kws.py .                                              [ 14%]
tests/test_dual_annealing.py ...                                         [ 15%]
tests/test_itercb.py ....................                                [ 18%]
tests/test_jsonutils.py .................                                [ 20%]
tests/test_least_squares.py .....                                        [ 21%]
tests/test_lineshapes.py ............................................... [ 28%]
..........................................                               [ 35%]
tests/test_manypeaks_speed.py .                                          [ 35%]
tests/test_max_nfev.py ...........................                       [ 39%]
tests/test_minimizer.py .ssssssssssssss                                  [ 41%]
tests/test_model.py .................................................... [ 49%]
........................................................................ [ 60%]
......s....s................................................             [ 69%]
tests/test_model_saveload.py .......................                     [ 72%]
tests/test_model_uncertainties.py .......                                [ 73%]
tests/test_models.py ........                                            [ 75%]
tests/test_multidatasets.py .                                            [ 75%]
tests/test_nose.py ...................s......                            [ 79%]
tests/test_pandas.py ..                                                  [ 79%]
tests/test_parameter.py ................................................ [ 86%]
..........                                                               [ 88%]
tests/test_parameters.py ...............................                 [ 92%]
tests/test_params_uvars.py ....                                          [ 93%]
tests/test_printfuncs.py ............................s......             [ 98%]
tests/test_shgo.py ......                                                [ 99%]
tests/test_stepmodel.py ..                                               [100%]

=============================== warnings summary ===============================
tests/test_manypeaks_speed.py:15
  /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.12_lmfit/build/tests/test_manypeaks_speed.py:15: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @pytest.mark.flaky(max_runs=5)

tests/test_model_saveload.py::test_load_legacy_modelresult
  /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.12_lmfit/build/lmfit/jsonutils.py:146: UserWarning: Could not unpack dill-encoded callable 'gaussian', saved with Python version 3.10
    warnings.warn(msg)

tests/test_model_saveload.py::test_load_model_versions
  /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.12_lmfit/build/lmfit/jsonutils.py:146: UserWarning: Could not unpack dill-encoded callable 'mysine', saved with Python version 3.10
    warnings.warn(msg)

tests/test_model_saveload.py::test_load_model_versions
  /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.12_lmfit/build/lmfit/jsonutils.py:146: UserWarning: Could not unpack dill-encoded callable 'mysine', saved with Python version 3.11
    warnings.warn(msg)

tests/test_nose.py::CommonMinimizerTest::test_emcee
  /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee>>)
    return self.run(*args, **kwds)

tests/test_nose.py::CommonMinimizerTest::test_emcee_bounds_length
  /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee_bounds_length of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_bounds_length>>)
    return self.run(*args, **kwds)

tests/test_nose.py::CommonMinimizerTest::test_emcee_custom_pool
  /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee_custom_pool of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_custom_pool>>)
    return self.run(*args, **kwds)

tests/test_nose.py::CommonMinimizerTest::test_emcee_float
  /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee_float of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_float>>)
    return self.run(*args, **kwds)

tests/test_nose.py::CommonMinimizerTest::test_emcee_init_with_chain
  /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee_init_with_chain of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_init_with_chain>>)
    return self.run(*args, **kwds)

tests/test_nose.py::CommonMinimizerTest::test_emcee_method_kwarg
  /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee_method_kwarg of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_method_kwarg>>)
    return self.run(*args, **kwds)

tests/test_nose.py::CommonMinimizerTest::test_emcee_ntemps
  /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee_ntemps of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_ntemps>>)
    return self.run(*args, **kwds)

tests/test_nose.py::CommonMinimizerTest::test_emcee_output
  /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee_output of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_output>>)
    return self.run(*args, **kwds)

tests/test_nose.py::CommonMinimizerTest::test_emcee_partial_bounds
  /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee_partial_bounds of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_partial_bounds>>)
    return self.run(*args, **kwds)

tests/test_nose.py::CommonMinimizerTest::test_emcee_reuse_sampler
  /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee_reuse_sampler of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_reuse_sampler>>)
    return self.run(*args, **kwds)

tests/test_nose.py::CommonMinimizerTest::test_emcee_seed
  /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee_seed of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_seed>>)
    return self.run(*args, **kwds)

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html

---------- coverage: platform linux, python 3.12.9-final-0 -----------
Coverage HTML written to dir htmlcov

=========== 636 passed, 26 skipped, 15 warnings in 190.01s (0:03:10) ===========
I: pybuild pybuild:334: rm -fr /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.12_lmfit/build/NIST_STRD /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.12_lmfit/build/examples; find /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.12_lmfit/build -name "*.sav" -delete
I: pybuild pybuild:308: cp -r NIST_STRD examples /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build
I: pybuild base:311: cd /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build; python3.13 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0
rootdir: /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build
configfile: pyproject.toml
plugins: typeguard-4.4.1, cov-5.0.0
collected 662 items

tests/test_1variable.py .                                                [  0%]
tests/test_NIST_Strd.py ...........................                      [  4%]
tests/test_algebraic_constraint.py ....                                  [  4%]
tests/test_ampgo.py ............                                         [  6%]
tests/test_basicfit.py .                                                 [  6%]
tests/test_basinhopping.py .....                                         [  7%]
tests/test_bounded_jacobian.py ..                                        [  7%]
tests/test_bounds.py .                                                   [  8%]
tests/test_brute.py ............                                         [  9%]
tests/test_builtin_models.py .......                                     [ 10%]
tests/test_confidence.py .............                                   [ 12%]
tests/test_covariance_matrix.py ..ssssssss.                              [ 14%]
tests/test_custom_independentvar.py .                                    [ 14%]
tests/test_default_kws.py .                                              [ 14%]
tests/test_dual_annealing.py ...                                         [ 15%]
tests/test_itercb.py ....................                                [ 18%]
tests/test_jsonutils.py .................                                [ 20%]
tests/test_least_squares.py .....                                        [ 21%]
tests/test_lineshapes.py ............................................... [ 28%]
..........................................                               [ 35%]
tests/test_manypeaks_speed.py .                                          [ 35%]
tests/test_max_nfev.py ...........................                       [ 39%]
tests/test_minimizer.py .ssssssssssssss                                  [ 41%]
tests/test_model.py .................................................... [ 49%]
........................................................................ [ 60%]
......s....s................................................             [ 69%]
tests/test_model_saveload.py .......................                     [ 72%]
tests/test_model_uncertainties.py .......                                [ 73%]
tests/test_models.py ........                                            [ 75%]
tests/test_multidatasets.py .                                            [ 75%]
tests/test_nose.py ...................s......                            [ 79%]
tests/test_pandas.py ..                                                  [ 79%]
tests/test_parameter.py ................................................ [ 86%]
..........                                                               [ 88%]
tests/test_parameters.py ...............................                 [ 92%]
tests/test_params_uvars.py ....                                          [ 93%]
tests/test_printfuncs.py ............................s......             [ 98%]
tests/test_shgo.py ......                                                [ 99%]
tests/test_stepmodel.py ..                                               [100%]

=============================== warnings summary ===============================
tests/test_manypeaks_speed.py:15
  /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build/tests/test_manypeaks_speed.py:15: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @pytest.mark.flaky(max_runs=5)

tests/test_model_saveload.py::test_load_legacy_modelresult
  /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build/lmfit/jsonutils.py:146: UserWarning: Could not unpack dill-encoded callable 'gaussian', saved with Python version 3.10
    warnings.warn(msg)

tests/test_model_saveload.py::test_load_model_versions
  /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build/lmfit/jsonutils.py:146: UserWarning: Could not unpack dill-encoded callable 'mysine', saved with Python version 3.10
    warnings.warn(msg)

tests/test_model_saveload.py::test_load_model_versions
  /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build/lmfit/jsonutils.py:146: UserWarning: Could not unpack dill-encoded callable 'mysine', saved with Python version 3.11
    warnings.warn(msg)

tests/test_model_saveload.py::test_load_model_versions
  /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build/lmfit/jsonutils.py:146: UserWarning: Could not unpack dill-encoded callable 'mysine', saved with Python version 3.12
    warnings.warn(msg)

tests/test_nose.py::CommonMinimizerTest::test_emcee
  /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee>>)
    return self.run(*args, **kwds)

tests/test_nose.py::CommonMinimizerTest::test_emcee_bounds_length
  /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee_bounds_length of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_bounds_length>>)
    return self.run(*args, **kwds)

tests/test_nose.py::CommonMinimizerTest::test_emcee_custom_pool
  /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee_custom_pool of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_custom_pool>>)
    return self.run(*args, **kwds)

tests/test_nose.py::CommonMinimizerTest::test_emcee_float
  /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee_float of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_float>>)
    return self.run(*args, **kwds)

tests/test_nose.py::CommonMinimizerTest::test_emcee_init_with_chain
  /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee_init_with_chain of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_init_with_chain>>)
    return self.run(*args, **kwds)

tests/test_nose.py::CommonMinimizerTest::test_emcee_method_kwarg
  /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee_method_kwarg of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_method_kwarg>>)
    return self.run(*args, **kwds)

tests/test_nose.py::CommonMinimizerTest::test_emcee_ntemps
  /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee_ntemps of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_ntemps>>)
    return self.run(*args, **kwds)

tests/test_nose.py::CommonMinimizerTest::test_emcee_output
  /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee_output of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_output>>)
    return self.run(*args, **kwds)

tests/test_nose.py::CommonMinimizerTest::test_emcee_partial_bounds
  /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee_partial_bounds of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_partial_bounds>>)
    return self.run(*args, **kwds)

tests/test_nose.py::CommonMinimizerTest::test_emcee_reuse_sampler
  /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee_reuse_sampler of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_reuse_sampler>>)
    return self.run(*args, **kwds)

tests/test_nose.py::CommonMinimizerTest::test_emcee_seed
  /usr/lib/python3.13/unittest/case.py:707: DeprecationWarning: It is deprecated to return a value that is not None from a test case (<bound method CommonMinimizerTest.test_emcee_seed of <tests.test_nose.CommonMinimizerTest testMethod=test_emcee_seed>>)
    return self.run(*args, **kwds)

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html

---------- coverage: platform linux, python 3.13.2-final-0 -----------
Coverage HTML written to dir htmlcov

=========== 636 passed, 26 skipped, 16 warnings in 194.16s (0:03:14) ===========
I: pybuild pybuild:334: rm -fr /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build/NIST_STRD /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build/examples; find /build/reproducible-path/lmfit-py-1.3.2/.pybuild/cpython3_3.13_lmfit/build -name "*.sav" -delete
	rm -fr -- /tmp/dh-xdg-rundir-aUai5XVx
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=pybuild
   dh_prep -O--buildsystem=pybuild
	rm -f -- debian/python3-lmfit.substvars debian/python-lmfit-doc.substvars
	rm -fr -- debian/.debhelper/generated/python3-lmfit/ debian/python3-lmfit/ debian/tmp/ debian/.debhelper/generated/python-lmfit-doc/ debian/python-lmfit-doc/
   dh_auto_install -O--buildsystem=pybuild
	install -m0755 -d /build/reproducible-path/lmfit-py-1.3.2/debian/tmp
	pybuild --install -i python{version} -p "3.12 3.13" --dest-dir=/build/reproducible-path/lmfit-py-1.3.2/debian/tmp
I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir
I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir
	rm -f debian/python-lmfit-doc.debhelper.log debian/python3-lmfit.debhelper.log
   debian/rules override_dh_installdocs-indep
make[1]: Entering directory '/build/reproducible-path/lmfit-py-1.3.2'
mv examples/example_emcee_Model_interface.py examples/nodoc_example_emcee_Model_interface.py
cp doc/sphinx/ext_mathjax.py doc/extensions.py
PYTHONPATH=. http_proxy='localhost' python3 -m sphinx -N -bhtml -D mathjax_path="/usr/share/javascript/mathjax/MathJax.js" doc/ .pybuild/html  # HTML generator
Running Sphinx v8.1.3
loading translations [en]... done
making output directory... done
Using Sphinx-Gallery to convert rst text blocks to markdown for .ipynb files.
loading intersphinx inventory 'py' from https://docs.python.org/3/objects.inv ...
loading intersphinx inventory 'numpy' from https://numpy.org/doc/stable/objects.inv ...
loading intersphinx inventory 'scipy' from https://docs.scipy.org/doc/scipy/objects.inv ...
loading intersphinx inventory 'matplotlib' from https://matplotlib.org/stable/objects.inv ...
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to <class 'requests.exceptions.ConnectionError'>: HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NameResolutionError("<urllib3.connection.HTTPSConnection object at 0xed7e5240>: Failed to resolve 'docs.python.org' ([Errno -3] Temporary failure in name resolution)"))
loading intersphinx inventory 'pandas' from https://pandas.pydata.org/pandas-docs/stable/objects.inv ...
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to <class 'requests.exceptions.ConnectionError'>: HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by NameResolutionError("<urllib3.connection.HTTPSConnection object at 0xed7ed3c8>: Failed to resolve 'numpy.org' ([Errno -3] Temporary failure in name resolution)"))
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to <class 'requests.exceptions.ConnectionError'>: HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by NameResolutionError("<urllib3.connection.HTTPSConnection object at 0xed7e5920>: Failed to resolve 'docs.scipy.org' ([Errno -3] Temporary failure in name resolution)"))
loading intersphinx inventory 'sympy' from https://docs.sympy.org/latest/objects.inv ...
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to <class 'requests.exceptions.ConnectionError'>: HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by NameResolutionError("<urllib3.connection.HTTPSConnection object at 0xed7e52f0>: Failed to resolve 'matplotlib.org' ([Errno -3] Temporary failure in name resolution)"))
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory 'https://pandas.pydata.org/pandas-docs/stable/objects.inv' not fetchable due to <class 'requests.exceptions.ConnectionError'>: HTTPSConnectionPool(host='pandas.pydata.org', port=443): Max retries exceeded with url: /pandas-docs/stable/objects.inv (Caused by NameResolutionError("<urllib3.connection.HTTPSConnection object at 0xed7e5a80>: Failed to resolve 'pandas.pydata.org' ([Errno -3] Temporary failure in name resolution)"))
WARNING: failed to reach any of the inventories with the following issues:
intersphinx inventory 'https://docs.sympy.org/latest/objects.inv' not fetchable due to <class 'requests.exceptions.ConnectionError'>: HTTPSConnectionPool(host='docs.sympy.org', port=443): Max retries exceeded with url: /latest/objects.inv (Caused by NameResolutionError("<urllib3.connection.HTTPSConnection object at 0xed7e53a0>: Failed to resolve 'docs.sympy.org' ([Errno -3] Temporary failure in name resolution)"))
generating gallery...
generating gallery for examples... [  6%] example_use_pandas.py
generating gallery for examples... [ 11%] example_expression_model.py
generating gallery for examples... [ 17%] example_fit_with_inequality.py
generating gallery for examples... [ 22%] example_diffev.py
generating gallery for examples... [ 28%] example_fit_with_bounds.py
generating gallery for examples... [ 33%] example_fit_with_algebraic_constraint.py
generating gallery for examples... [ 39%] example_reduce_fcn.py
generating gallery for examples... [ 44%] example_sympy.py
generating gallery for examples... [ 50%] example_basinhopping.py
generating gallery for examples... [ 56%] example_fit_multi_datasets.py
generating gallery for examples... [ 61%] example_Model_interface.py
generating gallery for examples... [ 67%] example_fit_with_derivfunc.py
generating gallery for examples... [ 72%] example_detect_outliers.py
generating gallery for examples... [ 78%] example_complex_resonator_model.py
generating gallery for examples... [ 83%] lmfit_emcee_model_selection.py
generating gallery for examples... [ 89%] example_confidence_interval.py
generating gallery for examples... [ 94%] example_two_dimensional_peak.py
generating gallery for examples... [100%] example_brute.py

computation time summary:
    - ../examples/example_brute.py:                           42.04 sec   0.0 MB
    - ../examples/example_confidence_interval.py:             35.80 sec   0.0 MB
    - ../examples/example_basinhopping.py:                     4.78 sec   0.0 MB
    - ../examples/example_two_dimensional_peak.py:             3.74 sec   0.0 MB
    - ../examples/example_detect_outliers.py:                  1.51 sec   0.0 MB
    - ../examples/example_sympy.py:                            1.42 sec   0.0 MB
    - ../examples/example_complex_resonator_model.py:          0.97 sec   0.0 MB
    - ../examples/example_diffev.py:                           0.58 sec   0.0 MB
    - ../examples/example_Model_interface.py:                  0.54 sec   0.0 MB
    - ../examples/example_reduce_fcn.py:                       0.41 sec   0.0 MB
    - ../examples/example_fit_with_algebraic_constraint.py:    0.38 sec   0.0 MB
    - ../examples/example_use_pandas.py:                       0.38 sec   0.0 MB
    - ../examples/example_fit_multi_datasets.py:               0.37 sec   0.0 MB
    - ../examples/example_fit_with_bounds.py:                  0.37 sec   0.0 MB
    - ../examples/example_fit_with_inequality.py:              0.34 sec   0.0 MB
    - ../examples/example_fit_with_derivfunc.py:               0.34 sec   0.0 MB
    - ../examples/example_expression_model.py:                 0.33 sec   0.0 MB
    - ../examples/lmfit_emcee_model_selection.py:              0.00 sec   0.0 MB
building [mo]: targets for 0 po files that are out of date
writing output... 
building [html]: targets for 14 source files that are out of date
updating environment: [new config] 33 added, 0 changed, 0 removed
reading sources... [  3%] bounds
reading sources... [  6%] builtin_models
reading sources... [  9%] confidence
reading sources... [ 12%] constraints
reading sources... [ 15%] contents
reading sources... [ 18%] examples/example_Model_interface
reading sources... [ 21%] examples/example_basinhopping
reading sources... [ 24%] examples/example_brute
reading sources... [ 27%] examples/example_complex_resonator_model
reading sources... [ 30%] examples/example_confidence_interval
reading sources... [ 33%] examples/example_detect_outliers
reading sources... [ 36%] examples/example_diffev
reading sources... [ 39%] examples/example_expression_model
reading sources... [ 42%] examples/example_fit_multi_datasets
reading sources... [ 45%] examples/example_fit_with_algebraic_constraint
reading sources... [ 48%] examples/example_fit_with_bounds
reading sources... [ 52%] examples/example_fit_with_derivfunc
reading sources... [ 55%] examples/example_fit_with_inequality
reading sources... [ 58%] examples/example_reduce_fcn
reading sources... [ 61%] examples/example_sympy
reading sources... [ 64%] examples/example_two_dimensional_peak
reading sources... [ 67%] examples/example_use_pandas
reading sources... [ 70%] examples/index
reading sources... [ 73%] examples/lmfit_emcee_model_selection
reading sources... [ 76%] faq
reading sources... [ 79%] fitting
reading sources... [ 82%] index
reading sources... [ 85%] installation
reading sources... [ 88%] intro
reading sources... [ 91%] model
reading sources... [ 94%] parameters
reading sources... [ 97%] support
reading sources... [100%] whatsnew

/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:27: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-output:

    from lmfit.models import LinearModel, LorentzianModel

    peak = LorentzianModel()
    background = LinearModel()
    model = peak + background [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:289: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from lmfit.models import ExpressionModel

    mod = ExpressionModel('off + amp * exp(-x/x0) * sin(x*phase)') [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:303: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from numpy import exp, linspace, sin

    x = linspace(0, 10, 501)
    params = mod.make_params(off=0.25, amp=1.0, x0=2.0, phase=0.04)
    y = mod.eval(params, x=x) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:324: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    script = """
    def mycurve(x, amp, cen, sig):
        loren = lorentzian(x, amplitude=amp, center=cen, sigma=sig)
        gauss = gaussian(x, amplitude=amp, center=cen, sigma=sig)
        return log(loren) * gradient(gauss) / gradient(x)
    """ [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:335: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    mod = ExpressionModel('mycurve(x, height, mid, wid)', init_script=script,
                          independent_vars=['x']) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:354: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-output:

    from numpy import loadtxt

    from lmfit.models import GaussianModel

    data = loadtxt('test_peak.dat')
    x = data[:, 0]
    y = data[:, 1]

    mod = GaussianModel()

    pars = mod.guess(y, x=x)
    out = mod.fit(y, pars, x=x)

    print(out.fit_report(min_correl=0.25)) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:374: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    print(out.fit_report(min_correl=0.25)) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:385: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    import matplotlib as mpl
    mpl.rcParams['figure.dpi'] = 150
    %matplotlib inline
    %config InlineBackend.figure_format = 'svg'

    import matplotlib.pyplot as plt
    plt.plot(x, y, '-')
    plt.plot(x, out.best_fit, '-', label='Gaussian Model')
    plt.legend()
    plt.show() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:406: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from lmfit.models import LorentzianModel

    mod = LorentzianModel() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:415: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    pars = mod.guess(y, x=x)
    out = mod.fit(y, pars, x=x)
    print(out.fit_report(min_correl=0.25)) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:424: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

     plt.plot(x, y, '-')
     plt.plot(x, out.best_fit, '-', label='Lorentzian Model')
     plt.legend()
     plt.show() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:435: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from lmfit.models import VoigtModel

    mod = VoigtModel() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:443: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    pars = mod.guess(y, x=x)
    out = mod.fit(y, pars, x=x)
    print(out.fit_report(min_correl=0.25)) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:454: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8))
    axes[0].plot(x, y, '-')
    axes[0].plot(x, out.best_fit, '-', label='Voigt Model\ngamma constrained')
    axes[0].legend()
    # free gamma parameter
    pars['gamma'].set(value=0.7, vary=True, expr='')
    out_gamma = mod.fit(y, pars, x=x)
    axes[1].plot(x, y, '-')
    axes[1].plot(x, out_gamma.best_fit, '-', label='Voigt Model\ngamma unconstrained')
    axes[1].legend()
    plt.show() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:485: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    print(out_gamma.fit_report(min_correl=0.25)) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:522: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute:: ../examples/doc_builtinmodels_stepmodel.py
    :hide-output: [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:533: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    print(out.fit_report()) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:540: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    plt.plot(x, y)
    plt.plot(x, out.init_fit, '--', label='initial fit')
    plt.plot(x, out.best_fit, '-', label='best fit')
    plt.legend()
    plt.show() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:563: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute:: ../examples/doc_builtinmodels_nistgauss.py
    :hide-output: [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:579: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    print(out.fit_report()) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:590: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8))
    axes[0].plot(x, y)
    axes[0].plot(x, init, '--', label='initial fit')
    axes[0].plot(x, out.best_fit, '-', label='best fit')
    axes[0].legend()

    comps = out.eval_components(x=x)
    axes[1].plot(x, y)
    axes[1].plot(x, comps['g1_'], '--', label='Gaussian component 1')
    axes[1].plot(x, comps['g2_'], '--', label='Gaussian component 2')
    axes[1].plot(x, comps['exp_'], '--', label='Exponential component')
    axes[1].legend()

    plt.show() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:632: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute:: ../examples/doc_builtinmodels_nistgauss2.py
    :hide-code:
    :hide-output: [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:638: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    plt.plot(x, y)
    plt.plot(x, out.init_fit, '--', label='initial fit')
    plt.plot(x, out.best_fit, '-', label='best fit')
    plt.legend()

    plt.show() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:652: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    print(out.fit_report()) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:689: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-output:

    import numpy as np
    import matplotlib.pyplot as plt
    from lmfit.models import SplineModel, GaussianModel

    data = np.loadtxt('test_splinepeak.dat')
    x = data[:, 0]
    y = data[:, 1]

    plt.plot(x, y, label='data')
    plt.legend()
    plt.show() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:706: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    plt.plot(x, y, label='data')
    plt.legend()
    plt.show() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:717: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-output:

    model = GaussianModel(prefix='peak_')
    params = model.make_params(amplitude=8, center=16, sigma=1) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:731: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-output:

    knot_xvals = np.array([1, 3, 5, 7, 9, 11, 13, 19, 21, 23, 25])

    bkg = SplineModel(prefix='bkg_', xknots=knot_xvals)
    params.update(bkg.guess(y, x)) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:751: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-output:

    model = model + bkg

    params['peak_amplitude'].min = 0
    params['peak_center'].min = 10
    params['peak_center'].max = 20

    out = model.fit(y, params, x=x)
    print(out.fit_report(min_correl=0.3)) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:770: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    print(out.fit_report(min_correl=0.3)) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:786: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
   :hide-output:

    comps = out.eval_components()
    plt.plot(x, out.best_fit, label='best fit')
    plt.plot(x, comps['bkg_'], label='background')
    plt.plot(x, comps['peak_'], label='peak')
    plt.legend() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:797: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
   :hide-code:

    plt.plot(x, y, label='data')
    plt.plot(x, out.best_fit, label='best fit')
    plt.plot(x, comps['bkg_'], label='background')
    plt.plot(x, comps['peak_'], label='peak')
    plt.legend()
    plt.show() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:810: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
   :hide-output:

    knot_yvals = np.array([o.value for o in out.params.values() if o.name.startswith('bkg')])
    plt.plot(knot_xvals, knot_yvals, 'o', color='black', label='spline knots values') [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:818: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
   :hide-code:

    plt.plot(x, y, label='data')
    plt.plot(x, out.best_fit, label='best fit')
    plt.plot(x, comps['bkg_'], label='background')
    plt.plot(x, comps['peak_'], label='peak')
    knot_yvals = np.array([o.value for o in out.params.values() if o.name.startswith('bkg')])
    plt.plot(knot_xvals, knot_yvals, 'o', color='black', label='spline knots values')

    plt.legend()
    plt.show() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:836: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
   :hide-output:

    knot_xvals1 = np.array([1, 3, 5, 7, 9, 11, 13,         19, 21, 23, 25])
    knot_xvals2 = np.array([1, 3, 5, 7, 9, 11, 13,   16,   19, 21, 23, 25])
    knot_xvals3 = np.array([1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 25]) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:877: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
   :hide-output:

    plt.plot(x, y, 'o', label='data')
    for nknots in (10, 15, 20, 25):
        model = SplineModel(prefix='bkg_',   xknots=np.linspace(0, 25, nknots))
        params = model.guess(y, x)
        out = model.fit(y, params, x=x)
        plt.plot(x, out.best_fit, label=f'best-fit ({nknots} knots)')

    plt.legend()
    plt.show() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/builtin_models.rst:894: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
   :hide-code:

    plt.plot(x, y, 'o', label='data')
    for nknots in (10, 15, 20, 25):
        model = SplineModel(prefix='bkg_',   xknots=np.linspace(0, 25, nknots))
        params = model.guess(y, x)
        out = model.fit(y, params, x=x)
        plt.plot(x, out.best_fit, label=f'best-fit ({nknots} knots)')

    plt.legend()
    plt.show() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:47: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    import numpy as np

    import lmfit

    x = np.linspace(0.3, 10, 100)
    np.random.seed(0)
    y = 1/(0.1*x) + 2 + 0.1*np.random.randn(x.size)
    pars = lmfit.Parameters()
    pars.add_many(('a', 0.1), ('b', 1))


    def residual(p):
        return 1/(p['a']*x) + p['b'] - y [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:68: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    mini = lmfit.Minimizer(residual, pars)
    result = mini.minimize()

    print(lmfit.fit_report(result.params)) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:78: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    ci = lmfit.conf_interval(mini, result)
    lmfit.printfuncs.report_ci(ci) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:105: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    for p in result.params:
        result.params[p].stderr = abs(result.params[p].value * 0.1) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:144: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    # <examples/doc_confidence_chi2_maps.py>
    import matplotlib.pyplot as plt
    import numpy as np

    from lmfit import conf_interval, conf_interval2d, report_ci
    from lmfit.lineshapes import gaussian
    from lmfit.models import GaussianModel, LinearModel

    sigma_levels = [1, 2, 3]

    rng = np.random.default_rng(seed=102)

    #########################
    # set up data -- deliberately adding imperfections and
    # a small amount of non-Gaussian noise
    npts = 501
    x = np.linspace(1, 100, num=npts)
    noise = rng.normal(scale=0.3, size=npts) + 0.2*rng.f(3, 9, size=npts)
    y = (gaussian(x, amplitude=83, center=47., sigma=5.)
         + 0.02*x + 4 + 0.25*np.cos((x-20)/8.0) + noise)

    mod = GaussianModel() + LinearModel()
    params = mod.make_params(amplitude=100, center=50, sigma=5,
                             slope=0, intecept=2)
    out = mod.fit(y, params, x=x)
    print(out.fit_report())

    #########################
    # run conf_intervale, print report
    sigma_levels = [1, 2, 3]
    ci = conf_interval(out, out, sigmas=sigma_levels)

    print("## Confidence Report:")
    report_ci(ci) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:191: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    #########################
    # plot initial fit
    colors = ('#2030b0', '#b02030', '#207070')
    fig, axes = plt.subplots(2, 3, figsize=(15, 9.5))

    axes[0, 0].plot(x, y, 'o', markersize=3, label='data', color=colors[0])
    axes[0, 0].plot(x, out.best_fit, label='fit', color=colors[1])
    axes[0, 0].set_xlabel('x')
    axes[0, 0].set_ylabel('y')
    axes[0, 0].legend()

    aix, aiy = 0, 0
    nsamples = 50
    explicitly_calculate_sigma = True

    for pairs in (('sigma', 'amplitude'), ('intercept', 'amplitude'),
                  ('slope', 'intercept'), ('slope', 'center'), ('sigma', 'center')):

        xpar, ypar = pairs
        if explicitly_calculate_sigma:
            print(f"Generating chi-square map for {pairs}")
            c_x, c_y, chi2_mat = conf_interval2d(out, out, xpar, ypar,
                                                 nsamples, nsamples, nsigma=3.5,
                                                 chi2_out=True)
            # explicitly calculate sigma matrix: sigma increases chi_square
            # from  chi_square_best
            # to    chi_square + sigma**2 * reduced_chi_square
            # so:   sigma = sqrt((chi2-chi2_best)/ reduced_chi_square)
            chi2_min = chi2_mat.min()
            sigma_mat = np.sqrt((chi2_mat-chi2_min)/out.redchi)
        else:
            print(f"Generating sigma map for {pairs}")
            # or, you could just calculate the matrix of probabilities as:
            c_x, c_y, sigma_mat = conf_interval2d(out, out, xpar, ypar,
                                                  nsamples, nsamples, nsigma=3.5)

        aix += 1
        if aix == 2:
            aix = 0
            aiy += 1
        ax = axes[aix, aiy]

        cnt = ax.contour(c_x, c_y, sigma_mat, levels=sigma_levels, colors=colors,
                         linestyles='-')
        ax.clabel(cnt, inline=True, fmt=r"$\sigma=%.0f$", fontsize=13)

        # draw boxes for estimated uncertaties:
        #  dotted :  scaled stderr from initial fit
        #  dashed :  values found from conf_interval()
        xv = out.params[xpar].value
        xs = out.params[xpar].stderr
        yv = out.params[ypar].value
        ys = out.params[ypar].stderr

        cix = ci[xpar]
        ciy = ci[ypar]
        nc = len(sigma_levels)
        for i in sigma_levels:
            # dotted line: scaled stderr
            ax.plot((xv-i*xs, xv+i*xs, xv+i*xs, xv-i*xs, xv-i*xs),
                    (yv-i*ys, yv-i*ys, yv+i*ys, yv+i*ys, yv-i*ys),
                    linestyle='dotted', color=colors[i-1])

            # dashed line: refined uncertainties from conf_interval
            xsp, xsm = cix[nc+i][1], cix[nc-i][1]
            ysp, ysm = ciy[nc+i][1], ciy[nc-i][1]
            ax.plot((xsm, xsp, xsp, xsm, xsm), (ysm, ysm, ysp, ysp, ysm),
                    linestyle='dashed', color=colors[i-1])

        ax.set_xlabel(xpar)
        ax.set_ylabel(ypar)
        ax.grid(True, color='#d0d0d0')
    plt.show()
    # <end examples/doc_confidence_chi2_maps.py> [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:295: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    import warnings
    warnings.filterwarnings(action="ignore")
    import matplotlib as mpl
    import matplotlib.pyplot as plt
    mpl.rcParams['figure.dpi'] = 150
    %matplotlib inline
    %config InlineBackend.figure_format = 'svg' [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:306: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute:: ../examples/doc_confidence_advanced.py
    :hide-output: [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:311: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    lmfit.report_fit(out2.params, min_correl=0.5)
    print('')
    lmfit.printfuncs.report_ci(ci) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:328: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8))
    cx, cy, grid = lmfit.conf_interval2d(mini, out2, 'a1', 't2', 30, 30)
    ctp = axes[0].contourf(cx, cy, grid, np.linspace(0, 1, 11))
    fig.colorbar(ctp, ax=axes[0])
    axes[0].set_xlabel('a1')
    axes[0].set_ylabel('t2')

    cx, cy, grid = lmfit.conf_interval2d(mini, out2, 'a2', 't2', 30, 30)
    ctp = axes[1].contourf(cx, cy, grid, np.linspace(0, 1, 11))
    fig.colorbar(ctp, ax=axes[1])
    axes[1].set_xlabel('a2')
    axes[1].set_ylabel('t2')

    plt.show() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:362: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-output:

    fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8))
    cx1, cy1, prob = trace['a1']['a1'], trace['a1']['t2'], trace['a1']['prob']
    cx2, cy2, prob2 = trace['t2']['t2'], trace['t2']['a1'], trace['t2']['prob']

    axes[0].scatter(cx1, cy1, c=prob, s=30)
    axes[0].set_xlabel('a1')
    axes[0].set_ylabel('t2')

    axes[1].scatter(cx2, cy2, c=prob2, s=30)
    axes[1].set_xlabel('t2')
    axes[1].set_ylabel('a1')

    plt.show() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/confidence.rst:381: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8))
    cx1, cy1, prob = trace['a1']['a1'], trace['a1']['t2'], trace['a1']['prob']
    cx2, cy2, prob2 = trace['t2']['t2'], trace['t2']['a1'], trace['t2']['prob']
    axes[0].scatter(cx1, cy1, c=prob, s=30)
    axes[0].set_xlabel('a1')
    axes[0].set_ylabel('t2')
    axes[1].scatter(cx2, cy2, c=prob2, s=30)
    axes[1].set_xlabel('t2')
    axes[1].set_ylabel('a1')
    plt.show() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/constraints.rst:43: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from lmfit import Parameters

    pars = Parameters()
    pars.add('frac_curve1', value=0.5, min=0, max=1)
    pars.add('frac_curve2', expr='1-frac_curve1') [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/constraints.rst:85: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    pars = Parameters()
    pars.add('amp_1', value=0.5, min=0, max=1)
    pars.add('cen_1', value=2.2)
    pars.add('wid_1', value=0.2) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/constraints.rst:94: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    pars.add('amp_2', expr='(2.0 - amp_1**2)')
    pars.add('wid_2', expr='sqrt(pi)*wid_1')
    pars.add('cen_2', expr='cen_1 * wid_2 / max(wid_1, 0.001)') [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/constraints.rst:103: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    pars.add('param_a', value=1)
    pars.add('param_b', value=2)
    pars.add('test_val', value=100)

    pars.add('bounded', expr='param_a if test_val/2. > 100 else param_b') [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/constraints.rst:113: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    if pars['test_val'].value/2. > 100:
        bounded = pars['param_a'].value
    else:
        bounded = pars['param_b'].value [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/constraints.rst:132: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    pars = Parameters()
    pars.add('x', value=5, vary=True)
    pars.add('delta', value=5, max=10, vary=True)
    pars.add('y', expr='delta-x') [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/constraints.rst:175: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    def mylorentzian(x, amp, cen, wid):
        "lorentzian function: wid = half-width at half-max"
        return (amp / (1 + ((x-cen) / wid)**2)) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/constraints.rst:185: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from lmfit import Parameters

    pars = Parameters()
    pars._asteval.symtable['lorentzian'] = mylorentzian [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/constraints.rst:194: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from lmfit import Minimizer


    def userfcn(x, params):
        pass


    fitter = Minimizer(userfcn, pars) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/constraints.rst:209: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    pars = Parameters()
    fitter = Minimizer(userfcn, pars)
    fitter.params._asteval.symtable['lorentzian'] = mylorentzian [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/faq.rst:249: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    import numpy as np

    import lmfit


    def quad_off(x, x0, a, b, c):
        model = a + b * x**2
        model[np.where(x < x0)] = c
        return model


    x0 = 19
    b = 0.02
    a = 2.0
    xdat = np.linspace(0, 100, 101)
    ydat = a + b * xdat**2
    ydat[np.where(xdat < x0)] = a + b * x0**2
    ydat += np.random.normal(scale=0.1, size=xdat.size)

    mod = lmfit.Model(quad_off)
    pars = mod.make_params(x0=22, a=1, b=1, c=1)

    result = mod.fit(ydat, pars, x=xdat)
    print(result.fit_report()) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/faq.rst:292: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    import numpy as np
    from scipy.special import erf

    import lmfit


    def quad_off(x, x0, a, b, c):
        m1 = a + b * x**2
        m2 = c * np.ones(len(x))
        # step up from 0 to 1 at x0: (erf(x-x0)+1)/2
        # step down from 1 to 0 at x0: (1-erf(x-x0))/2
        model = m1 * (erf(x-x0)+1)/2 + m2 * (1-erf(x-x0))/2
        return model


    x0 = 19
    b = 0.02
    a = 2.0
    xdat = np.linspace(0, 100, 101)
    ydat = a + b * xdat**2
    ydat[np.where(xdat < x0)] = a + b * x0**2
    ydat += np.random.normal(scale=0.1, size=xdat.size)

    mod = lmfit.Model(quad_off)
    pars = mod.make_params(x0=22, a=1, b=1, c=1)

    result = mod.fit(ydat, pars, x=xdat)
    print(result.fit_report()) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:64: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from numpy import exp, sign, sin, pi


    def residual(pars, x, data=None, eps=None):
        # unpack parameters: extract .value attribute for each parameter
        parvals = pars.valuesdict()
        period = parvals['period']
        shift = parvals['shift']
        decay = parvals['decay']

        if abs(shift) > pi/2:
            shift = shift - sign(shift)*pi

        if abs(period) < 1.e-10:
            period = sign(period)*1.e-10

        model = parvals['amp'] * sin(shift + x/period) * exp(-x*x*decay*decay)

        if data is None:
            return model
        if eps is None:
            return model - data
        return (model-data) / eps [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:97: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    from lmfit import Parameter, Parameters

    params =  Parameters() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:104: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    params['period'] = Parameter(name='period', value=2, min=1.e-10) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:110: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    period = 1 [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:115: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    if abs(period) < 1.e-10:
        period = sign(period)*1.e-10 [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:521: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute:: ../examples/doc_fitting_withreport.py
    :hide-output: [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:526: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    print(fit_report(out)) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:535: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    print('-------------------------------')
    print('Parameter    Value       Stderr')
    for name, param in out.params.items():
        print(f'{name:7s} {param.value:11.5f} {param.stderr:11.5f}') [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:643: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    import warnings
    warnings.filterwarnings(action="ignore")

    import matplotlib as mpl
    import matplotlib.pyplot as plt
    mpl.rcParams['figure.dpi'] = 150
    %matplotlib inline
    %config InlineBackend.figure_format = 'svg' [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:656: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    import matplotlib.pyplot as plt
    import numpy as np

    import lmfit

    x = np.linspace(1, 10, 250)
    np.random.seed(0)
    y = 3.0 * np.exp(-x / 2) - 5.0 * np.exp(-(x - 0.1) / 10.) + 0.1 * np.random.randn(x.size) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:669: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    p = lmfit.Parameters()
    p.add_many(('a1', 4.), ('a2', 4.), ('t1', 3.), ('t2', 3., True))

    def residual(p):
        v = p.valuesdict()
        return v['a1'] * np.exp(-x / v['t1']) + v['a2'] * np.exp(-(x - 0.1) / v['t2']) - y [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:683: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    mi = lmfit.minimize(residual, p, method='nelder', nan_policy='omit')
    lmfit.printfuncs.report_fit(mi.params, min_correl=0.5) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:690: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    plt.plot(x, y, 'o')
    plt.plot(x, residual(mi.params) + y, label='best fit')
    plt.legend()
    plt.show() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:717: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    mi.params.add('__lnsigma', value=np.log(0.1), min=np.log(0.001), max=np.log(2)) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:724: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-output:

    res = lmfit.minimize(residual, method='emcee', nan_policy='omit', burn=300, steps=1000, thin=20,
                         params=mi.params, is_weighted=False, progress=False) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:743: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    plt.plot(res.acceptance_fraction, 'o')
    plt.xlabel('walker')
    plt.ylabel('acceptance fraction')
    plt.show() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:753: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    import corner

    emcee_plot = corner.corner(res.flatchain, labels=res.var_names,
                               truths=list(res.params.valuesdict().values())) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:765: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    print('median of posterior probability distribution')
    print('--------------------------------------------')
    lmfit.report_fit(res.params) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:786: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    highest_prob = np.argmax(res.lnprob)
    hp_loc = np.unravel_index(highest_prob, res.lnprob.shape)
    mle_soln = res.chain[hp_loc]
    for i, par in enumerate(p):
        p[par].value = mle_soln[i]


    print('\nMaximum Likelihood Estimation from emcee       ')
    print('-------------------------------------------------')
    print('Parameter  MLE Value   Median Value   Uncertainty')
    fmt = '  {:5s}  {:11.5f} {:11.5f}   {:11.5f}'.format
    for name, param in p.items():
        print(fmt(name, param.value, res.params[name].value,
                  res.params[name].stderr)) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/fitting.rst:810: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    print('\nError estimates from emcee:')
    print('------------------------------------------------------')
    print('Parameter  -2sigma  -1sigma   median  +1sigma  +2sigma')

    for name in p.keys():
        quantiles = np.percentile(res.flatchain[name],
                                  [2.275, 15.865, 50, 84.135, 97.275])
        median = quantiles[2]
        err_m2 = quantiles[0] - median
        err_m1 = quantiles[1] - median
        err_p1 = quantiles[3] - median
        err_p2 = quantiles[4] - median
        fmt = '  {:5s}   {:8.4f} {:8.4f} {:8.4f} {:8.4f} {:8.4f}'.format
        print(fmt(name, err_m2, err_m1, median, err_p1, err_p2)) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/intro.rst:43: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from numpy import exp, sin

    def residual(variables, x, data, uncertainty):
        """Model a decaying sine wave and subtract data."""
        amp = variables[0]
        phaseshift = variables[1]
        freq = variables[2]
        decay = variables[3]

        model = amp * sin(x*freq + phaseshift) * exp(-x*x*decay)

        return (data-model) / uncertainty [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/intro.rst:60: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from numpy import linspace, random
    from scipy.optimize import leastsq

    # generate synthetic data with noise
    x = linspace(0, 100)
    noise = random.normal(size=x.size, scale=0.2)
    data = 7.5 * sin(x*0.22 + 2.5) * exp(-x*x*0.01) + noise

    # generate experimental uncertainties
    uncertainty = abs(0.16 + random.normal(size=x.size, scale=0.05))

    variables = [10.0, 0.2, 3.0, 0.007]
    out = leastsq(residual, variables, args=(x, data, uncertainty)) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/intro.rst:123: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from numpy import exp, sin

    from lmfit import minimize, Parameters


    def residual(params, x, data, uncertainty):
        amp = params['amp']
        phaseshift = params['phase']
        freq = params['frequency']
        decay = params['decay']

        model = amp * sin(x*freq + phaseshift) * exp(-x*x*decay)

        return (data-model) / uncertainty


    params = Parameters()
    params.add('amp', value=10)
    params.add('decay', value=0.007)
    params.add('phase', value=0.2)
    params.add('frequency', value=3.0)

    out = minimize(residual, params, args=(x, data, uncertainty)) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/intro.rst:158: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from lmfit import create_params

    params = create_params(amp=10, decay=0.007, phase=0.2, frequency=3.0) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/intro.rst:176: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

   params = Parameters()
   params.add('amp', value=10, vary=False)
   params.add('decay', value=0.007, min=0.0)
   params.add('phase', value=0.2)
   params.add('frequency', value=3.0, max=10) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/intro.rst:192: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

   params = create_params(amp={'value': 10, 'vary': False},
                          decay={'value': 0.007, 'min': 0},
                          phase=0.2,
                          frequency={'value': 3.0, 'max':10}) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/intro.rst:201: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    params['amp'].vary = False
    params['decay'].min = 0.10 [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:49: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    import matplotlib as mpl
    mpl.rcParams['figure.dpi'] = 150
    %matplotlib inline
    %config InlineBackend.figure_format = 'svg' [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:57: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from numpy import exp, linspace, random


    def gaussian(x, amp, cen, wid):
        return amp * exp(-(x-cen)**2 / wid) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:69: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-output:

    from scipy.optimize import curve_fit

    x = linspace(-10, 10, 101)
    y = gaussian(x, 2.33, 0.21, 1.51) + random.normal(0, 0.2, x.size)

    init_vals = [1, 0, 1]  # for [amp, cen, wid]
    best_vals, covar = curve_fit(gaussian, x, y, p0=init_vals) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:90: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from lmfit import Model

    gmodel = Model(gaussian)
    print(f'parameter names: {gmodel.param_names}')
    print(f'independent variables: {gmodel.independent_vars}') [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:120: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    params = gmodel.make_params() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:130: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    params = gmodel.make_params(cen=0.3, amp=3, wid=1.25) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:144: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    x_eval = linspace(0, 10, 201)
    y_eval = gmodel.eval(params, x=x_eval) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:151: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    y_eval = gmodel.eval(x=x_eval, cen=6.5, amp=100, wid=2.0) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:160: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    result = gmodel.fit(y, params, x=x) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:166: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    result = gmodel.fit(y, x=x, cen=0.5, amp=10, wid=2.0) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:173: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute:: ../examples/doc_model_gaussian.py
    :hide-output: [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:180: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    print(result.fit_report()) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:190: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    plt.plot(x, y, 'o')
    plt.plot(x, result.init_fit, '--', label='initial fit')
    plt.plot(x, result.best_fit, '-', label='best fit')
    plt.legend()
    plt.show() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:204: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    gmodel = Model(gaussian)
    result = gmodel.fit(y, params, x=x, amp=5, cen=5, wid=1) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:350: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    import numpy as np
    from lmfit import Model


    def decay(t, tau, N):
       return N*np.exp(-t/tau)


    decay_model = Model(decay)
    print(f'independent variables: {decay_model.independent_vars}')

    params = decay_model.make_params()
    print('\nParameters:')
    for pname, par in params.items():
        print(pname, par) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:375: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    decay_model = Model(decay, independent_vars=['tau'])
    print(f'independent variables: {decay_model.independent_vars}')

    params = decay_model.make_params()
    print('\nParameters:')
    for pname, par in params.items():
        print(pname, par) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:407: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    def decay2(t, tau, N=10, check_positive=False):
        if check_positive:
            arg = abs(t)/max(1.e-9, abs(tau))
        else:
            arg = t/tau
        return N*np.exp(arg)


    mod = Model(decay2)
    print(f'independent variables: {mod.independent_vars}')

    params = mod.make_params()
    print('Parameters:')
    for pname, par in params.items():
        print(pname, par) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:440: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::


    def voigt(x, amplitude=1.0, center=0.0, sigma=1.0, gamma=None):
        """Return a 1-dimensional Voigt function.
            ...
        """
        if gamma is None:
            gamma = sigma
        z = (x-center + 1j*gamma) / max(tiny, (sigma*s2))
        return amplitude*real(wofz(z)) / max(tiny, (sigma*s2pi))

    mod = Model(voigt)
    print(f'independent variables: {mod.independent_vars}')

    params = mod.make_params(amplitude=10, center=5, sigma=2)

    # or
    params2 = mod.make_params(amplitude=10, center=5, sigma=2, gamma=1.5) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:483: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    def myfunc(x, amplitude=1, center=0, sigma=1):
        # function definition, for now just ``pass``
        pass


    mod = Model(myfunc, prefix='f1_')
    params = mod.make_params()
    print('Parameters:')
    for pname, par in params.items():
        print(pname, par) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:530: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    def myfunc(x, a=1, b=0):
        return a*x + 10*a - b [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:537: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    def myfunc(x, a, b):
        return a*x + 10*a - b [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:556: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    mod = Model(myfunc)

    # simply supply initial values
    pars = mod.make_params(a=3, b=0.5)

    # supply initial values, attributes for bounds, etcetera:
    pars_bounded = mod.make_params(a=dict(value=3, min=0),
                                   b=dict(value=0.5, vary=False)) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:576: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from lmfit import create_params

    mod = Model(myfunc)

    # simply supply initial values
    pars = create_params(a=3, b=0.5)

    # supply initial values and attributes for bounds, etc:
    pars_bounded = create_params(a=dict(value=3, min=0),
                                 b=dict(value=0.5, vary=False)) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:600: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    x = linspace(0, 10, 100)
    y_eval = mod.eval(x=x, a=7.0, b=-2.0)
    y_sim = y_eval + random.normal(0, 0.2, x.size)
    out = mod.fit(y_sim, pars, x=x, a=3.0, b=0.0) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:631: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    mod = Model(myfunc)
    mod.set_param_hint('bounded_parameter', min=0, max=1.0)
    pars = mod.make_params() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:643: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    print('Parameter hints:')
    for pname, par in mod.param_hints.items():
        print(pname, par) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:658: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    mod = Model(gaussian)
    mod.set_param_hint('wid', min=0)
    mod.set_param_hint('fwhm', expr='2.3548*wid')
    params = mod.make_params(amp={'value': 10, 'min':0.1, 'max':2000},
                             cen=5.5, wid=1.25)
    params.pretty_print() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:775: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute:: ../examples/doc_model_savemodel.py [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:779: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute:: ../examples/doc_model_loadmodel.py
    :hide-output: [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1077: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute:: ../examples/doc_model_gaussian.py
    :hide-output:
    :hide-code: [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1081: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-output:

    dely = result.eval_uncertainty(sigma=3)
    plt.fill_between(x, result.best_fit-dely, result.best_fit+dely, color="#ABABAB",
                     label=r'3-$\sigma$ uncertainty band') [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1092: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    plt.plot(x, y, 'o')
    plt.plot(x, result.init_fit, '--', label='initial fit')
    plt.plot(x, result.best_fit, '-', label='best fit')
    plt.fill_between(x, result.best_fit-dely, result.best_fit+dely, color="#ABABAB",
                     label=r'3-$\sigma$ uncertainty band')
    plt.legend()
    plt.show() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1116: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute:: ../examples/doc_model_uncertainty2.py [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1126: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute:: ../examples/doc_model_uncertainty_pred.py [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1169: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute:: ../examples/doc_uvars_params.py [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1201: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute:: ../examples/doc_model_savemodelresult.py
    :hide-output: [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1206: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute:: ../examples/doc_model_loadmodelresult.py
    :hide-output: [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1228: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    def gaussian_plus_line(x, amp, cen, wid, slope, intercept):
        """line + 1-d gaussian"""

        gauss = (amp / (sqrt(2*pi) * wid)) * exp(-(x-cen)**2 / (2*wid**2))
        line = slope*x + intercept
        return gauss + line [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1239: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    mod = Model(gaussian_plus_line) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1251: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    def line(x, slope, intercept):
        """a line"""
        return slope*x + intercept [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1259: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    mod = Model(gaussian) + Model(line) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1265: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute:: ../examples/doc_model_two_components.py
    :hide-output: [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1270: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

     print(result.fit_report()) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1277: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8))
    axes[0].plot(x, y, 'o')
    axes[0].plot(x, result.init_fit, '--', label='initial fit')
    axes[0].plot(x, result.best_fit, '-', label='best fit')
    axes[0].legend()

    comps = result.eval_components()
    axes[1].plot(x, y, 'o')
    axes[1].plot(x, comps['gaussian'], '--', label='Gaussian component')
    axes[1].plot(x, comps['line'], '--', label='Line component')
    axes[1].legend()
    plt.show() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1299: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-output:

    comps = result.eval_components()
    plt.plot(x, y, 'o')
    plt.plot(x, comps['gaussian'], '--', label='Gaussian component')
    plt.plot(x, comps['line'], '--', label='Line component') [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1321: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    xwide = linspace(-5, 25, 3001)
    predicted = mod.eval(result.params, x=xwide) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1338: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    def fcn1(x, a):
       pass

    def fcn2(x, b):
       pass

    def fcn3(x, c):
       pass [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1350: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

     mod = Model(fcn1) + Model(fcn2) * Model(fcn3) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1364: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    import numpy as np

    def convolve(dat, kernel):
        """simple convolution of two arrays"""
        npts = min(len(dat), len(kernel))
        pad = np.ones(npts)
        tmp = np.concatenate((pad*dat[0], dat, pad*dat[-1]))
        out = np.convolve(tmp, kernel, mode='valid')
        noff = int((len(out) - npts) / 2)
        return (out[noff:])[:npts] [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1382: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute:: ../examples/doc_model_composite.py
    :hide-output: [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1387: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

     print(result.fit_report()) [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/model.rst:1394: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :hide-code:

    fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8))
    axes[0].plot(x, y, 'o')
    axes[0].plot(x, result.init_fit, '--', label='initial fit')
    axes[0].plot(x, result.best_fit, '-', label='best fit')
    axes[0].legend()
    axes[1].plot(x, y, 'o')
    axes[1].plot(x, 10*comps['jump'], '--', label='Jump component')
    axes[1].plot(x, 10*comps['gaussian'], '-', label='Gaussian component')
    axes[1].legend()
    plt.show() [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/parameters.rst:117: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute:: ../examples/doc_parameters_basic.py
    :hide-output: [docutils]
/build/reproducible-path/lmfit-py-1.3.2/doc/parameters.rst:125: ERROR: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    def fcn2min(params, x, data):
        """Model a decaying sine wave and subtract data."""
        v = params.valuesdict()

        model = v['amp'] * np.sin(x*v['omega'] + v['shift']) * np.exp(-x*x*v['decay'])
        return model - data [docutils]
looking for now-outdated files... none found
pickling environment... done
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D: dh_python3 dh_python3:180: version: 6.20250108
D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild']
D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild'])
D: dh_python3 dh_python3:183: supported Python versions: 3.12,3.13 (default=3.13)
D: dh_python3 debhelper:166: skipping package python-lmfit-doc (missing ${python3:Depends} in Depends/Recommends)
D: dh_python3 debhelper:174: source=lmfit-py, binary packages=['python3-lmfit']
D: dh_python3 dh_python3:205: processing package python3-lmfit...
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D: dh_python3 fs:338: package python3-lmfit details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': {'debian/python3-lmfit/usr/lib/python3/dist-packages/lmfit-1.3.2.dist-info/METADATA'}, 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()}
D: dh_python3 depends:103: generating dependencies for package python3-lmfit
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D: dh_python3 pydist:175: trying to find dependency for dill>=0.3.4 (python=None)
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I: dh_python3 pydist:339: Ignoring complex environment marker: pycairo; platform_system == "Windows" and extra == "doc"
D: dh_python3 depends:253: D={'python3:any', 'python3-asteval (>= 1.0~)', 'python3-scipy (>= 1.6~)', 'python3-dill', 'python3-uncertainties (>= 3.2.2~)', 'python3-numpy (>= 1.19~)'}; R=[]; S=[]; E=[], B=[]; RT=[]
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	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_reduce_fcn_001.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_thumb.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_inequality_001.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_derivfunc_thumb.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_bounds_001_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_multi_datasets_thumb.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_Model_interface_001_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_bounds_001.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_001_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_001.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_003_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_004_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_002.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_derivfunc_001.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_reduce_fcn_001_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_003.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_002.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_Model_interface_thumb.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_001.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_diffev_001_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_bounds_thumb.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/9896395df97ee7377a6f37d810ed61b7/example_fit_with_inequality.zip using File::StripNondeterminism::handlers::zip
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/f81f821349f6ac014b70d7d599914cf0/example_expression_model.zip using File::StripNondeterminism::handlers::zip
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/94d199f783ca5474abd6b2528828a3da/example_reduce_fcn.zip using File::StripNondeterminism::handlers::zip
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/dbec5987901e14219cbb0374bcb09f84/example_Model_interface.zip using File::StripNondeterminism::handlers::zip
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/4b0b2bd3ab5ac85a687b73fdf77c10e8/example_fit_with_algebraic_constraint.zip using File::StripNondeterminism::handlers::zip
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_001.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_thumb.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_thumb.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_003.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_002_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_001_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_003_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_002.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_002_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_003_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/83c1efe92ae9450e505c8e1a6f140c89/example_diffev.zip using File::StripNondeterminism::handlers::zip
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/9525432cdc678720dba934ae8fde54b3/example_brute.zip using File::StripNondeterminism::handlers::zip
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/43307aed08caee4fd5f81b541b305e07/example_fit_with_derivfunc.zip using File::StripNondeterminism::handlers::zip
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/fe2af31b7b0cbda8b83cc55e6a993962/example_fit_multi_datasets.zip using File::StripNondeterminism::handlers::zip
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/00134ee71b9a3140093a2c880ffc05b2/example_two_dimensional_peak.zip using File::StripNondeterminism::handlers::zip
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_004.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_002.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_inequality_thumb.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_003.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_001_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_004_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_lmfit_emcee_model_selection_thumb.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_basinhopping_001_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_003_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_002_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_003.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_001_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_002_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_expression_model_001.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_thumb.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_004.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_002.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_expression_model_001_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_thumb.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_multi_datasets_001.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_reduce_fcn_thumb.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_use_pandas_001_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_Model_interface_001.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_algebraic_constraint_thumb.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_basinhopping_001.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_001.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_002_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_003.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_use_pandas_001.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_algebraic_constraint_001.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_derivfunc_001_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_003_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_thumb.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_expression_model_thumb.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_001.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_002.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_001.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_002_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_001_3_00x.png using File::StripNondeterminism::handlers::png
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/1e1423cf629493dec61889ad589cc4ee/example_sympy.zip using File::StripNondeterminism::handlers::zip
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/570649c46ce3ba7d3aa57423dbdf4bfc/example_detect_outliers.zip using File::StripNondeterminism::handlers::zip
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/8bc8bf935cb55b846fb887ae67119e73/example_fit_with_bounds.zip using File::StripNondeterminism::handlers::zip
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/d91d8231a4fc8b35dce7ae4cca7141a1/example_use_pandas.zip using File::StripNondeterminism::handlers::zip
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/bc82bea3a5dd7bdba60b65220891d9e5/examples_python.zip using File::StripNondeterminism::handlers::zip
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/cb0c48698554996e8733a1803c042898/lmfit_emcee_model_selection.zip using File::StripNondeterminism::handlers::zip
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/699f40a9aaadc3e2940695c56ce1a766/example_complex_resonator_model.zip using File::StripNondeterminism::handlers::zip
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/a77b5add2eaa4ab07fa4f0e915c3066a/example_basinhopping.zip using File::StripNondeterminism::handlers::zip
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/71e355b3b30ce74828ca4cf53539dee9/example_confidence_interval.zip using File::StripNondeterminism::handlers::zip
	Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/fb625db3c50d423b1b7881136ffdeec8/examples_jupyter.zip using File::StripNondeterminism::handlers::zip
   dh_compress -O--buildsystem=pybuild
	cd debian/python3-lmfit
	cd debian/python-lmfit-doc
	chmod a-x usr/share/doc/python3-lmfit/changelog.Debian
	gzip -9nf usr/share/doc/python3-lmfit/changelog.Debian
	chmod a-x usr/share/doc/python-lmfit-doc/changelog.Debian usr/share/doc/python3-lmfit/html/_downloads/2c0316848a8a5e58fdf5c1bd1978018e/example_confidence_interval.ipynb usr/share/doc/python3-lmfit/html/_downloads/3805fc8171e8a0686d5cf65be55085ee/example_complex_resonator_model.py usr/share/doc/python3-lmfit/html/_downloads/3dcc7459227dbd4ba1982949be8491e1/example_complex_resonator_model.ipynb usr/share/doc/python3-lmfit/html/_downloads/6069607ae016c4f4f055d1c8dfd4bfa7/example_sympy.ipynb usr/share/doc/python3-lmfit/html/_downloads/87be2ee5d3294a608face2290f955fe3/example_two_dimensional_peak.py usr/share/doc/python3-lmfit/html/_downloads/8b2fe0a32f4790de5b0465c00682a37b/example_Model_interface.py usr/share/doc/python3-lmfit/html/_downloads/9074bca346e91d4783f1ebfda08595dd/lmfit_emcee_model_selection.ipynb usr/share/doc/python3-lmfit/html/_downloads/9254f2af7eef00978dc5823dc5418985/example_brute.ipynb usr/share/doc/python3-lmfit/html/_downloads/a48b6f5c2c4202cb67d15a117c5eb6bc/example_fit_with_derivfunc.ipynb usr/share/doc/python3-lmfit/html/_downloads/a4a9bd70fc277eac0b5a505f48c84a99/example_detect_outliers.ipynb usr/share/doc/python3-lmfit/html/_downloads/a69966d88009a9341e88bfe1935158a7/example_Model_interface.ipynb usr/share/doc/python3-lmfit/html/_downloads/b6a243851aa5b1d7362705005c5ed3b1/example_confidence_interval.py usr/share/doc/python3-lmfit/html/_downloads/c004866ac6395edd2609ff96cecdc255/example_brute.py usr/share/doc/python3-lmfit/html/_downloads/c5b1d1ce60f76e20b3312a2697eca7f1/lmfit_emcee_model_selection.py usr/share/doc/python3-lmfit/html/_downloads/e9797dfaa256c029a43c2a364328ed36/example_fit_multi_datasets.ipynb usr/share/doc/python3-lmfit/html/_downloads/ee6bdfefbd3fee18a7b2cb99c291f27e/example_two_dimensional_peak.ipynb
	cd '/build/reproducible-path/lmfit-py-1.3.2'
	gzip -9nf usr/share/doc/python-lmfit-doc/changelog.Debian usr/share/doc/python3-lmfit/html/_downloads/2c0316848a8a5e58fdf5c1bd1978018e/example_confidence_interval.ipynb usr/share/doc/python3-lmfit/html/_downloads/3805fc8171e8a0686d5cf65be55085ee/example_complex_resonator_model.py usr/share/doc/python3-lmfit/html/_downloads/3dcc7459227dbd4ba1982949be8491e1/example_complex_resonator_model.ipynb usr/share/doc/python3-lmfit/html/_downloads/6069607ae016c4f4f055d1c8dfd4bfa7/example_sympy.ipynb usr/share/doc/python3-lmfit/html/_downloads/87be2ee5d3294a608face2290f955fe3/example_two_dimensional_peak.py usr/share/doc/python3-lmfit/html/_downloads/8b2fe0a32f4790de5b0465c00682a37b/example_Model_interface.py usr/share/doc/python3-lmfit/html/_downloads/9074bca346e91d4783f1ebfda08595dd/lmfit_emcee_model_selection.ipynb usr/share/doc/python3-lmfit/html/_downloads/9254f2af7eef00978dc5823dc5418985/example_brute.ipynb usr/share/doc/python3-lmfit/html/_downloads/a48b6f5c2c4202cb67d15a117c5eb6bc/example_fit_with_derivfunc.ipynb usr/share/doc/python3-lmfit/html/_downloads/a4a9bd70fc277eac0b5a505f48c84a99/example_detect_outliers.ipynb usr/share/doc/python3-lmfit/html/_downloads/a69966d88009a9341e88bfe1935158a7/example_Model_interface.ipynb usr/share/doc/python3-lmfit/html/_downloads/b6a243851aa5b1d7362705005c5ed3b1/example_confidence_interval.py usr/share/doc/python3-lmfit/html/_downloads/c004866ac6395edd2609ff96cecdc255/example_brute.py usr/share/doc/python3-lmfit/html/_downloads/c5b1d1ce60f76e20b3312a2697eca7f1/lmfit_emcee_model_selection.py usr/share/doc/python3-lmfit/html/_downloads/e9797dfaa256c029a43c2a364328ed36/example_fit_multi_datasets.ipynb usr/share/doc/python3-lmfit/html/_downloads/ee6bdfefbd3fee18a7b2cb99c291f27e/example_two_dimensional_peak.ipynb
	cd '/build/reproducible-path/lmfit-py-1.3.2'
   dh_fixperms -O--buildsystem=pybuild
	find debian/python3-lmfit ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
	find debian/python-lmfit-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
	find debian/python3-lmfit/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-lmfit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/python-lmfit-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-lmfit-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/python3-lmfit/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
	find debian/python3-lmfit -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
	find debian/python-lmfit-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
	find debian/python3-lmfit/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
	find debian/python-lmfit-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
   dh_missing -O--buildsystem=pybuild
   dh_installdeb -O--buildsystem=pybuild
	install -m0755 -d debian/python3-lmfit/DEBIAN
	printf '#!/bin/sh\nset -e\n' > debian/python3-lmfit/DEBIAN/postinst
	cat debian/python3-lmfit.postinst.debhelper >> debian/python3-lmfit/DEBIAN/postinst
	chmod 0755 -- debian/python3-lmfit/DEBIAN/postinst
	printf '#!/bin/sh\nset -e\n' > debian/python3-lmfit/DEBIAN/prerm
	cat debian/python3-lmfit.prerm.debhelper >> debian/python3-lmfit/DEBIAN/prerm
	chmod 0755 -- debian/python3-lmfit/DEBIAN/prerm
	install -m0755 -d debian/python-lmfit-doc/DEBIAN
   dh_numpy3 -O--buildsystem=pybuild
	mv debian/python3-lmfit.substvars.new debian/python3-lmfit.substvars
	mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars
   dh_gencontrol -O--buildsystem=pybuild
	install -m0755 -d debian/python-lmfit-doc/DEBIAN
	echo misc:Depends= >> debian/python-lmfit-doc.substvars
	echo misc:Pre-Depends= >> debian/python-lmfit-doc.substvars
	dpkg-gencontrol -ppython-lmfit-doc -ldebian/changelog -Tdebian/python-lmfit-doc.substvars -cdebian/control -Pdebian/python-lmfit-doc
	install -m0755 -d debian/python3-lmfit/DEBIAN
	echo misc:Depends= >> debian/python3-lmfit.substvars
	echo misc:Pre-Depends= >> debian/python3-lmfit.substvars
	dpkg-gencontrol -ppython3-lmfit -ldebian/changelog -Tdebian/python3-lmfit.substvars -cdebian/control -Pdebian/python3-lmfit
dpkg-gencontrol: warning: package python-lmfit-doc: substitution variable ${python3:Depends} unused, but is defined
	chmod 0644 -- debian/python-lmfit-doc/DEBIAN/control
	chmod 0644 -- debian/python3-lmfit/DEBIAN/control
   dh_md5sums -O--buildsystem=pybuild
	install -m0755 -d debian/python3-lmfit/DEBIAN
	install -m0755 -d debian/python-lmfit-doc/DEBIAN
	cd debian/python3-lmfit >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
	cd debian/python-lmfit-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
	chmod 0644 -- debian/python3-lmfit/DEBIAN/md5sums
	chmod 0644 -- debian/python-lmfit-doc/DEBIAN/md5sums
   dh_builddeb -O--buildsystem=pybuild
	dpkg-deb --root-owner-group --build debian/python3-lmfit ..
	dpkg-deb --root-owner-group --build debian/python-lmfit-doc ..
dpkg-deb: building package 'python-lmfit-doc' in '../python-lmfit-doc_1.3.2-2_all.deb'.
dpkg-deb: building package 'python3-lmfit' in '../python3-lmfit_1.3.2-2_all.deb'.
 dpkg-genbuildinfo --build=binary -O../lmfit-py_1.3.2-2_i386.buildinfo
 dpkg-genchanges --build=binary -O../lmfit-py_1.3.2-2_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/85162 and its subdirectories
I: Current time: Tue Mar 24 09:51:09 -12 2026
I: pbuilder-time-stamp: 1774389069
Wed Feb 19 15:28:12 UTC 2025  I: 1st build successful. Starting 2nd build on remote node ionos12-i386.debian.net.
Wed Feb 19 15:28:12 UTC 2025  I: Preparing to do remote build '2' on ionos12-i386.debian.net.
Wed Feb 19 15:45:56 UTC 2025  I: Deleting $TMPDIR on ionos12-i386.debian.net.
Wed Feb 19 15:45:56 UTC 2025  I: lmfit-py_1.3.2-2_i386.changes:
Format: 1.8
Date: Tue, 11 Feb 2025 09:25:26 +1100
Source: lmfit-py
Binary: python-lmfit-doc python3-lmfit
Architecture: all
Version: 1.3.2-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Stuart Prescott <stuart@debian.org>
Description:
 python-lmfit-doc - Least-Squares Minimization with Constraints (Documentation)
 python3-lmfit - Least-Squares Minimization with Constraints (Python 3)
Changes:
 lmfit-py (1.3.2-2) unstable; urgency=medium
 .
   * Team upload.
   * Upload to unstable.
   * Update Standards-Version to 4.7.0 (no changes required).
   * Typo fix in doc-base file.
Checksums-Sha1:
 cb8dabfd03864e9d5714f2730705d9eeb0f9fd3e 11641 lmfit-py_1.3.2-2_i386.buildinfo
 b7551f9ece497cca0563603011e658e09f29213e 5686916 python-lmfit-doc_1.3.2-2_all.deb
 5cdf114c00e351680ef8ff9c1591c8b8e9b6b9f6 81452 python3-lmfit_1.3.2-2_all.deb
Checksums-Sha256:
 ad99c9487c9ec9d6899a6c666d95326ac815b5ef1117d9d15b83277e9e7051c3 11641 lmfit-py_1.3.2-2_i386.buildinfo
 eb10a56ab26aba0302b12539d35d6cff63cba2077a70763bcdfe0bf972535710 5686916 python-lmfit-doc_1.3.2-2_all.deb
 267381270741b8ed81fbc191daf358b3959beb039d80ce238c7d3682dc77d244 81452 python3-lmfit_1.3.2-2_all.deb
Files:
 a4a2256ecef23a68ea33d9743b2228b7 11641 science optional lmfit-py_1.3.2-2_i386.buildinfo
 e418c3d0e77144af9bb6ba3ba0716ef9 5686916 doc optional python-lmfit-doc_1.3.2-2_all.deb
 a9ce445fceff1cbae9e4400acce9bba7 81452 python optional python3-lmfit_1.3.2-2_all.deb
Wed Feb 19 15:45:58 UTC 2025  I: diffoscope 288 will be used to compare the two builds:
Running as unit: rb-diffoscope-i386_6-55819.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.MxhgKdRY/lmfit-py_1.3.2-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.MxhgKdRY/lmfit-py_1.3.2-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.MxhgKdRY/lmfit-py_1.3.2-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.MxhgKdRY/b1/lmfit-py_1.3.2-2_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.MxhgKdRY/b2/lmfit-py_1.3.2-2_i386.changes

## close_archive (total time: 0.000s)
       0.000s      4 calls    diffoscope.comparators.xz.XzContainer
       0.000s      4 calls    diffoscope.comparators.tar.TarContainer

## command (total time: 1.831s)
       0.860s     57 calls    diff
       0.629s      6 calls    xz
       0.167s     11 calls    js-beautify
       0.132s    187 calls    html2text
       0.020s      3 calls    cmp
       0.020s      3 calls    cmp (external)
       0.003s     46 calls    cmp (internal)

## compare_files (cumulative) (total time: 22.144s)
       4.891s      1 call     abc.DotChangesFile
       4.857s      1 call     abc.DebFile
       4.799s      2 calls    abc.XzFile
       4.088s      1 call     abc.DebDataTarFile
       2.379s      1 call     abc.JavaScriptFile
       0.721s     17 calls    abc.HtmlFile
       0.353s     17 calls    abc.TextFile
       0.044s      1 call     abc.TarFile
       0.012s      1 call     abc.Md5sumsFile

## container_extract (total time: 0.799s)
       0.630s      6 calls    diffoscope.comparators.xz.XzContainer
       0.143s    456 calls    diffoscope.comparators.deb.DebTarContainer
       0.023s      8 calls    diffoscope.comparators.deb.DebContainer
       0.003s      6 calls    diffoscope.comparators.tar.TarContainer

## diff (total time: 0.009s)
       0.009s     61 calls    linediff

## has_same_content_as (total time: 0.026s)
       0.017s      1 call     abc.DebDataTarFile
       0.004s     17 calls    abc.HtmlFile
       0.002s     19 calls    abc.TextFile
       0.002s      2 calls    abc.DebFile
       0.000s      4 calls    diffoscope.comparators.utils.libarchive.LibarchiveSymlink
       0.000s      2 calls    abc.Md5sumsFile
       0.000s      2 calls    abc.XzFile
       0.000s      1 call     diffoscope.comparators.binary.FilesystemFile
       0.000s      1 call     abc.TarFile
       0.000s      1 call     abc.DotChangesFile
       0.000s      1 call     abc.JavaScriptFile

## main (total time: 6.017s)
       5.990s      2 calls    outputs
       0.027s      1 call     cleanup

## open_archive (total time: 0.000s)
       0.000s      6 calls    diffoscope.comparators.xz.XzContainer
       0.000s      4 calls    diffoscope.comparators.tar.TarContainer
       0.000s      2 calls    diffoscope.comparators.deb.DebTarContainer
       0.000s      2 calls    diffoscope.comparators.deb.DebContainer

## output (total time: 0.707s)
       0.703s      1 call     html
       0.002s      1 call     text
       0.002s      1 call     json

## recognizes (total time: 0.375s)
       0.250s   2130 calls    diffoscope.comparators.utils.libarchive.LibarchiveMember
       0.065s     12 calls    diffoscope.comparators.binary.FilesystemFile
       0.036s    260 calls    diffoscope.comparators.utils.archive.ArchiveMember
       0.023s    108 calls    diffoscope.comparators.debian.DebControlMember

## specialize (total time: 0.692s)
       0.692s     50 calls    specialize
Finished with result: success
Main processes terminated with: code=exited/status=1
Service runtime: 6.341s
CPU time consumed: 6.868s
Wed Feb 19 15:46:04 UTC 2025  W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate.
Wed Feb 19 15:46:04 UTC 2025  E: lmfit-py failed to build reproducibly in trixie on i386.
Wed Feb 19 15:46:06 UTC 2025  I: Submitting .buildinfo files to external archives:
Wed Feb 19 15:46:06 UTC 2025  I: Submitting 16K	b1/lmfit-py_1.3.2-2_i386.buildinfo.asc
Wed Feb 19 15:46:07 UTC 2025  I: Submitting 16K	b2/lmfit-py_1.3.2-2_i386.buildinfo.asc
Wed Feb 19 15:46:08 UTC 2025  I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Wed Feb 19 15:46:08 UTC 2025  I: Done submitting .buildinfo files.
Wed Feb 19 15:46:08 UTC 2025  I: Removing signed lmfit-py_1.3.2-2_i386.buildinfo.asc files:
removed './b1/lmfit-py_1.3.2-2_i386.buildinfo.asc'
removed './b2/lmfit-py_1.3.2-2_i386.buildinfo.asc'