Sun May 19 17:34:59 UTC 2024 I: starting to build lmfit-py/trixie/i386 on jenkins on '2024-05-19 17:34' Sun May 19 17:34:59 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_16/21436/console.log Sun May 19 17:34:59 UTC 2024 I: Downloading source for trixie/lmfit-py=1.2.2-3 --2024-05-19 17:34:59-- http://deb.debian.org/debian/pool/main/l/lmfit-py/lmfit-py_1.2.2-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2732 (2.7K) [text/prs.lines.tag] Saving to: ‘lmfit-py_1.2.2-3.dsc’ 0K .. 100% 368M=0s 2024-05-19 17:34:59 (368 MB/s) - ‘lmfit-py_1.2.2-3.dsc’ saved [2732/2732] Sun May 19 17:34:59 UTC 2024 I: lmfit-py_1.2.2-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: lmfit-py Binary: python3-lmfit, python-lmfit-doc Architecture: all Version: 1.2.2-3 Maintainer: Debian Science Maintainers Uploaders: Picca Frédéric-Emmanuel , Michael Hudson-Doyle Homepage: https://lmfit.github.io/lmfit-py/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/science-team/lmfit-py Vcs-Git: https://salsa.debian.org/science-team/lmfit-py.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-matplotlib, python3-pandas, python3-pytest, python3-scipy, python3-tk Build-Depends: debhelper-compat (= 13), dh-python, pybuild-plugin-pyproject, dh-sequence-numpy3, dh-sequence-python3, dh-sequence-sphinxdoc , python3-all, python3-asteval (>= 0.9.28~), python3-dill , python3-ipython , python3-numpy (>= 1.19~), python3-pandas, python3-pytest , python3-pytest-cov , python3-scipy (>= 1.6~), python3-setuptools, python3-setuptools-scm, python3-sphinx , python3-sphinx-gallery , python3-sympy , python3-nbsphinx , python3-uncertainties (>= 3.1.7-1.1~) Package-List: python-lmfit-doc deb doc optional arch=all python3-lmfit deb python optional arch=all Checksums-Sha1: 0a96e741469eccd6a96dd78bfe7ddfca592d2dd3 336346 lmfit-py_1.2.2.orig.tar.gz f3a60d6ebaba4fd6248b05640e45b60668cf42fd 9004 lmfit-py_1.2.2-3.debian.tar.xz Checksums-Sha256: 044a052a11a61da0576274504c17eb7e2803b41128e25821e96632207f23c88c 336346 lmfit-py_1.2.2.orig.tar.gz 1b612a08a2bad38b1dfe717f4f015f1cdebaac32c32e84455521d606fa628d80 9004 lmfit-py_1.2.2-3.debian.tar.xz Files: 3b24487b6088db2670d1de45f02547f3 336346 lmfit-py_1.2.2.orig.tar.gz a5ccd0fcf7b8bbd37a3daac965de0f62 9004 lmfit-py_1.2.2-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmXOcowRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFbNw/+Kld25wCbMF1jxEoBdWtH+bdISS18V7wH meNgI4B58Ggr5NJvcU9IBsHHEdbgjpj/JYydlcvo0MT5wT++0iMCqIpdmfXvBDlQ eePK1u2kjYqVy6+fkt6EsqLLpj1GBmPPGNyEbQTOFZQEUzlyetCqGn5jtkuYToBP ddTGoVKmkCPUQIdAOJEe/OwdJqAPj8YEm1Afh0BYD8TS902ZiO0fr/CxXQ3NiYx4 EXEtZ1KV7QwoAZId/T23f97WK43xna03t4WmfJKBUWZp9rVdb+RanPCyd9Kha3ju OFQQxnOa/3JqyqgAo4wh0Z/+DffIEqN4eKpKcBcsHYMgSKwiV4yV1qA6HmspCmuZ yd/KO2ZTxSEC6+r+Fi+z2TwTJz9qqYHUGB7MsYnTa+1uI9Vgl1bAaynQHWUespeq TN9Hvtsf6ZdvWoRIzj0HfKWAa5elHsNpFKq0UF3mGh++TyfrK72ahQsM7oMK/T2f cUXLS9QRJoa3n10ZSpfo8yoreFSrv+fMXsCbXieAj+C6XX0Xbu8gm2gemUAzaf0V jv800Vh/axOa7clvhxV+slms6TvDojA4GoOYWMSfkcQsHvRdDv+4XwgZ8UqG2lHu j3vZ29wC9lxsMDee9F6uMr3zF3vE5+lDQU1Ewybu4x/CfTNeS2fqo6a88JV7KXJp GqOdIZIjQ3U= =H2uw -----END PGP SIGNATURE----- Sun May 19 17:34:59 UTC 2024 I: Checking whether the package is not for us Sun May 19 17:34:59 UTC 2024 I: Starting 1st build on remote node infom08-i386.debian.net. Sun May 19 17:34:59 UTC 2024 I: Preparing to do remote build '1' on infom08-i386.debian.net. Sun May 19 17:49:31 UTC 2024 I: Deleting $TMPDIR on infom08-i386.debian.net. W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build I: Current time: Sat Jun 21 11:58:00 -12 2025 I: pbuilder-time-stamp: 1750550280 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [lmfit-py_1.2.2-3.dsc] I: copying [./lmfit-py_1.2.2.orig.tar.gz] I: copying [./lmfit-py_1.2.2-3.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Feb 15 20:22:36 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./lmfit-py_1.2.2-3.dsc: no acceptable signature found dpkg-source: info: extracting lmfit-py in lmfit-py-1.2.2 dpkg-source: info: unpacking lmfit-py_1.2.2.orig.tar.gz dpkg-source: info: unpacking lmfit-py_1.2.2-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying deactivate_test.patch dpkg-source: info: applying 0004-jupyter_sphinx-is-not-yet-working-on-Debian.patch dpkg-source: info: applying sphinx_basic_layout.patch dpkg-source: info: applying exclude_test_for_32bit.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/875/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='875' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.EkgTARCL/pbuilderrc_8WGu --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.EkgTARCL/b1 --logfile b1/build.log lmfit-py_1.2.2-3.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/sbin/chroot' I: uname -a Linux infom08-i386 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 21 17:48 /bin -> usr/bin I: user script /srv/workspace/pbuilder/875/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, pybuild-plugin-pyproject, dh-sequence-numpy3, dh-sequence-python3, dh-sequence-sphinxdoc, python3-all, python3-asteval (>= 0.9.28~), python3-dill, python3-ipython, python3-numpy (>= 1.19~), python3-pandas, python3-pytest, python3-pytest-cov, python3-scipy (>= 1.6~), python3-setuptools, python3-setuptools-scm, python3-sphinx, python3-sphinx-gallery, python3-sympy, python3-nbsphinx, python3-uncertainties (>= 3.1.7-1.1~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19687 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-numpy3; however: Package dh-sequence-numpy3 is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-sphinxdoc; however: Package dh-sequence-sphinxdoc is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-asteval (>= 0.9.28~); however: Package python3-asteval is not installed. pbuilder-satisfydepends-dummy depends on python3-dill; however: Package python3-dill is not installed. pbuilder-satisfydepends-dummy depends on python3-ipython; however: Package python3-ipython is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy (>= 1.19~); however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however: Package python3-pytest-cov is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy (>= 1.6~); however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm; however: Package python3-setuptools-scm is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-gallery; however: Package python3-sphinx-gallery is not installed. pbuilder-satisfydepends-dummy depends on python3-sympy; however: Package python3-sympy is not installed. pbuilder-satisfydepends-dummy depends on python3-nbsphinx; however: Package python3-nbsphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-uncertainties (>= 3.1.7-1.1~); however: Package python3-uncertainties is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnorm1t64{a} libopenjp2-7{a} libpgm-5.3-0t64{a} libpipeline1{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libsodium23{a} libsub-override-perl{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} libzmq5{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} pybuild-plugin-pyproject{a} python-babel-localedata{a} python-matplotlib-data{a} python-tinycss2-common{a} python3{a} python3-alabaster{a} python3-all{a} python3-appdirs{a} python3-asteval{a} python3-asttokens{a} python3-attr{a} python3-babel{a} python3-bleach{a} python3-brotli{a} python3-bs4{a} python3-build{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-coverage{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-dill{a} python3-distutils{a} python3-docutils{a} python3-entrypoints{a} python3-executing{a} python3-fastjsonschema{a} python3-fonttools{a} python3-fs{a} python3-hatch-vcs{a} python3-hatchling{a} python3-html5lib{a} python3-idna{a} python3-imagesize{a} python3-iniconfig{a} python3-installer{a} python3-ipython{a} python3-jedi{a} python3-jinja2{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-jupyter-client{a} python3-jupyter-core{a} python3-jupyterlab-pygments{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lxml-html-clean{a} python3-lz4{a} python3-markupsafe{a} python3-matplotlib{a} python3-matplotlib-inline{a} python3-minimal{a} python3-mpmath{a} python3-nbclient{a} python3-nbconvert{a} python3-nbformat{a} python3-nbsphinx{a} python3-nest-asyncio{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pandocfilters{a} python3-parso{a} python3-pathspec{a} python3-pexpect{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-prompt-toolkit{a} python3-ptyprocess{a} python3-pure-eval{a} python3-py{a} python3-pygments{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytest-cov{a} python3-referencing{a} python3-requests{a} python3-roman{a} python3-rpds-py{a} python3-scipy{a} python3-setuptools{a} python3-setuptools-scm{a} python3-six{a} python3-snowballstemmer{a} python3-soupsieve{a} python3-sphinx{a} python3-sphinx-gallery{a} python3-stack-data{a} python3-sympy{a} python3-tinycss2{a} python3-tk{a} python3-toml{a} python3-tornado{a} python3-traitlets{a} python3-trove-classifiers{a} python3-typeshed{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-uncertainties{a} python3-urllib3{a} python3-wcwidth{a} python3-webencodings{a} python3-wheel{a} python3-zmq{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx optipng pandoc python3-bottleneck python3-cssselect python3-json-pointer python3-numexpr python3-odf python3-olefile python3-openpyxl python3-rfc3987 python3-sphinxcontrib.bibtex python3-tables python3-uritemplate python3-webcolors shared-mime-info wget xdg-user-dirs 0 packages upgraded, 235 newly installed, 0 to remove and 0 not upgraded. Need to get 133 MB of archives. After unpacking 613 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libjs-jquery-hotkeys all 0~20130707+git2d51e3a9+dfsg-2.1 [11.5 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libpython3.11-minimal i386 3.11.9-1 [817 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.2-1 [107 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 python3.11-minimal i386 3.11.9-1 [1918 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.11.8-1 [26.3 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 tzdata all 2024a-4 [255 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-4 [69.3 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-4 [171 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 libpython3.11-stdlib i386 3.11.9-1 [1795 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 python3.11 i386 3.11.9-1 [602 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.11.8-1 [9336 B] Get: 15 http://deb.debian.org/debian trixie/main i386 python3 i386 3.11.8-1 [27.4 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.3-1 [809 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.3-1 [2224 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 sgml-base all 1.31 [15.4 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 openssl i386 3.2.1-3 [1364 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20240203 [158 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3 [42.9 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-4 [1194 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.1-1 [98.5 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.1-1 [1421 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libtcl8.6 i386 8.6.14+dfsg-1 [1095 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b3 [314 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 libpng16-16t64 i386 1.6.43-5 [286 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libfreetype6 i386 2.13.2+dfsg-1+b4 [449 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-core all 2.37-8 [840 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 fontconfig-config i386 2.15.0-1.1 [317 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libfontconfig1 i386 2.15.0-1.1 [401 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libxau6 i386 1:1.0.9-1+b1 [18.5 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libbsd0 i386 0.12.2-1 [134 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libxdmcp6 i386 1:1.1.2-3+b1 [24.8 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libxcb1 i386 1.15-1 [148 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 libx11-data all 2:1.8.7-1 [328 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 libx11-6 i386 2:1.8.7-1+b1 [822 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libxrender1 i386 1:0.9.10-1.1+b1 [28.8 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 libxft2 i386 2.3.6-1+b1 [55.3 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 x11-common all 1:7.7+23 [252 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 libxss1 i386 1:1.2.3-1+b1 [17.3 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libtk8.6 i386 8.6.14-1 [826 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 tk8.6-blt2.5 i386 2.5.3+dfsg-7 [616 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 blt i386 2.5.3+dfsg-7 [6024 B] Get: 58 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 65 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-1+b1 [194 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b3 [727 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 python3-distutils all 3.12.3-1 [131 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 68.1.2-2 [468 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20240422 [107 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 xml-core all 0.19 [20.1 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 docutils-common all 0.20.1+dfsg-3 [128 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 fonts-lyx all 2.4.0~RC4-1 [189 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.0-3 [140 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.1~rc2-1 [22.8 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.20-1 [46.9 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 libfribidi0 i386 1.0.13-3+b1 [71.8 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14-20240330-1 [735 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 libglib2.0-0t64 i386 2.80.2-1 [1555 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 libgraphite2-3 i386 1.3.14-2 [77.7 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.20.1-6+b1 [36.1 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.20.1-6+b1 [83.2 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get: 91 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.20.1-6+b1 [360 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.20.1-6+b1 [145 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 libharfbuzz0b i386 8.3.0-2+b1 [2234 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 libimagequant0 i386 2.18.0-1+b1 [35.9 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 libjbig0 i386 2.1-6.1+b1 [31.8 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo i386 1:2.1.5-3 [169 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 libjs-jquery-isonscreen all 1.2.0-1.1 [3196 B] Get: 98 http://deb.debian.org/debian trixie/main i386 libjs-jquery-metadata all 12-4 [6532 B] Get: 99 http://deb.debian.org/debian trixie/main i386 libjs-jquery-tablesorter all 1:2.31.3+dfsg1-3 [184 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 libjs-jquery-throttle-debounce all 1.1+dfsg.1-2 [12.2 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 103 http://deb.debian.org/debian trixie/main i386 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 104 http://deb.debian.org/debian trixie/main i386 libjson-perl all 4.10000-1 [87.5 kB] Get: 105 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.0-3 [2167 kB] Get: 106 http://deb.debian.org/debian trixie/main i386 liblbfgsb0 i386 3.0+dfsg.4-1+b1 [29.1 kB] Get: 107 http://deb.debian.org/debian trixie/main i386 liblcms2-2 i386 2.14-2+b1 [165 kB] Get: 108 http://deb.debian.org/debian trixie/main i386 liblerc4 i386 4.0.0+ds-4+b1 [180 kB] Get: 109 http://deb.debian.org/debian trixie/main i386 libnorm1t64 i386 1.5.9+dfsg-3.1 [237 kB] Get: 110 http://deb.debian.org/debian trixie/main i386 libopenjp2-7 i386 2.5.0-2+b3 [197 kB] Get: 111 http://deb.debian.org/debian trixie/main i386 libpgm-5.3-0t64 i386 5.3.128~dfsg-2.1 [167 kB] Get: 112 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.3-1 [1945 kB] Get: 113 http://deb.debian.org/debian trixie/main i386 libqhull-r8.0 i386 2020.2-6+b1 [256 kB] Get: 114 http://deb.debian.org/debian trixie/main i386 libraqm0 i386 0.10.1-1+b1 [14.7 kB] Get: 115 http://deb.debian.org/debian trixie/main i386 libsharpyuv0 i386 1.4.0-0.1 [113 kB] Get: 116 http://deb.debian.org/debian trixie/main i386 libsodium23 i386 1.0.18-1+b1 [185 kB] Get: 117 http://deb.debian.org/debian trixie/main i386 libwebp7 i386 1.4.0-0.1 [318 kB] Get: 118 http://deb.debian.org/debian trixie/main i386 libtiff6 i386 4.5.1+git230720-4 [338 kB] Get: 119 http://deb.debian.org/debian trixie/main i386 libwebpdemux2 i386 1.4.0-0.1 [111 kB] Get: 120 http://deb.debian.org/debian trixie/main i386 libwebpmux3 i386 1.4.0-0.1 [125 kB] Get: 121 http://deb.debian.org/debian trixie/main i386 libxslt1.1 i386 1.1.35-1+b1 [243 kB] Get: 122 http://deb.debian.org/debian trixie/main i386 libzmq5 i386 4.3.5-1+b2 [306 kB] Get: 123 http://deb.debian.org/debian trixie/main i386 python3-packaging all 24.0-1 [45.5 kB] Get: 124 http://deb.debian.org/debian trixie/main i386 python3-pyproject-hooks all 1.0.0-2 [10.6 kB] Get: 125 http://deb.debian.org/debian trixie/main i386 python3-toml all 0.10.2-1 [16.2 kB] Get: 126 http://deb.debian.org/debian trixie/main i386 python3-wheel all 0.43.0-1 [52.5 kB] Get: 127 http://deb.debian.org/debian trixie/main i386 python3-build all 1.2.1-1 [34.1 kB] Get: 128 http://deb.debian.org/debian trixie/main i386 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 129 http://deb.debian.org/debian trixie/main i386 pybuild-plugin-pyproject all 6.20240422 [11.1 kB] Get: 130 http://deb.debian.org/debian trixie/main i386 python-babel-localedata all 2.14.0-1 [5701 kB] Get: 131 http://deb.debian.org/debian trixie/main i386 python-matplotlib-data all 3.6.3-2 [2744 kB] Get: 132 http://deb.debian.org/debian trixie/main i386 python-tinycss2-common all 1.3.0-1 [31.9 kB] Get: 133 http://deb.debian.org/debian trixie/main i386 python3-alabaster all 0.7.12-1 [20.8 kB] Get: 134 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.3-1 [659 kB] Get: 135 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.11.8-1 [1056 B] Get: 136 http://deb.debian.org/debian trixie/main i386 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 137 http://deb.debian.org/debian trixie/main i386 python3-asteval all 0.9.31-1 [20.5 kB] Get: 138 http://deb.debian.org/debian trixie/main i386 python3-six all 1.16.0-6 [16.3 kB] Get: 139 http://deb.debian.org/debian trixie/main i386 python3-asttokens all 2.4.1-1 [20.6 kB] Get: 140 http://deb.debian.org/debian trixie/main i386 python3-attr all 23.2.0-2 [65.5 kB] Get: 141 http://deb.debian.org/debian trixie/main i386 python3-tz all 2024.1-2 [30.9 kB] Get: 142 http://deb.debian.org/debian trixie/main i386 python3-babel all 2.14.0-1 [111 kB] Get: 143 http://deb.debian.org/debian trixie/main i386 python3-webencodings all 0.5.1-5 [11.1 kB] Get: 144 http://deb.debian.org/debian trixie/main i386 python3-html5lib all 1.1-6 [90.5 kB] Get: 145 http://deb.debian.org/debian trixie/main i386 python3-bleach all 6.1.0-2 [50.7 kB] Get: 146 http://deb.debian.org/debian trixie/main i386 python3-brotli i386 1.1.0-2+b3 [323 kB] Get: 147 http://deb.debian.org/debian trixie/main i386 python3-soupsieve all 2.5-1 [38.1 kB] Get: 148 http://deb.debian.org/debian trixie/main i386 python3-bs4 all 4.12.3-1 [133 kB] Get: 149 http://deb.debian.org/debian trixie/main i386 python3-certifi all 2023.11.17-1 [155 kB] Get: 150 http://deb.debian.org/debian trixie/main i386 python3-cffi-backend i386 1.16.0-2+b2 [114 kB] Get: 151 http://deb.debian.org/debian trixie/main i386 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 152 http://deb.debian.org/debian trixie/main i386 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 153 http://deb.debian.org/debian trixie/main i386 python3-numpy i386 1:1.26.4+ds-8 [5469 kB] Get: 154 http://deb.debian.org/debian trixie/main i386 python3-contourpy i386 1.0.7-3 [295 kB] Get: 155 http://deb.debian.org/debian trixie/main i386 python3-coverage i386 7.2.7+dfsg1-1+b1 [170 kB] Get: 156 http://deb.debian.org/debian trixie/main i386 python3-cycler all 0.12.1-1 [9496 B] Get: 157 http://deb.debian.org/debian trixie/main i386 python3-dateutil all 2.9.0-2 [79.4 kB] Get: 158 http://deb.debian.org/debian trixie/main i386 python3-decorator all 5.1.1-5 [15.1 kB] Get: 159 http://deb.debian.org/debian trixie/main i386 python3-defusedxml all 0.7.1-2 [43.3 kB] Get: 160 http://deb.debian.org/debian trixie/main i386 python3-dill all 0.3.8-1 [81.7 kB] Get: 161 http://deb.debian.org/debian trixie/main i386 python3-roman all 3.3-3 [9880 B] Get: 162 http://deb.debian.org/debian trixie/main i386 python3-docutils all 0.20.1+dfsg-3 [389 kB] Get: 163 http://deb.debian.org/debian trixie/main i386 python3-entrypoints all 0.4-2 [7184 B] Get: 164 http://deb.debian.org/debian trixie/main i386 python3-executing all 2.0.1-0.1 [22.7 kB] Get: 165 http://deb.debian.org/debian trixie/main i386 python3-fastjsonschema all 2.19.1-1 [21.3 kB] Get: 166 http://deb.debian.org/debian trixie/main i386 python3-scipy i386 1.11.4-6 [19.0 MB] Get: 167 http://deb.debian.org/debian trixie/main i386 python3-typing-extensions all 4.11.0-1 [67.2 kB] Get: 168 http://deb.debian.org/debian trixie/main i386 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 169 http://deb.debian.org/debian trixie/main i386 python3-mpmath all 1.3.0-1 [419 kB] Get: 170 http://deb.debian.org/debian trixie/main i386 python3-sympy all 1.12-7 [3869 kB] Get: 171 http://deb.debian.org/debian trixie/main i386 python3-fs all 2.4.16-4 [95.4 kB] Get: 172 http://deb.debian.org/debian trixie/main i386 python3-lxml i386 5.1.0-1 [2065 kB] Get: 173 http://deb.debian.org/debian trixie/main i386 python3-lz4 i386 4.0.2+dfsg-1+b3 [25.6 kB] Get: 174 http://deb.debian.org/debian trixie/main i386 unicode-data all 15.1.0-1 [8547 kB] Get: 175 http://deb.debian.org/debian trixie/main i386 python3-fonttools i386 4.46.0-1 [1613 kB] Get: 176 http://deb.debian.org/debian trixie/main i386 python3-pathspec all 0.12.1-1 [28.1 kB] Get: 177 http://deb.debian.org/debian trixie/main i386 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 178 http://deb.debian.org/debian trixie/main i386 python3-trove-classifiers all 2024.1.31-1 [9968 B] Get: 179 http://deb.debian.org/debian trixie/main i386 python3-hatchling all 1.24.2-1 [53.2 kB] Get: 180 http://deb.debian.org/debian trixie/main i386 python3-setuptools-scm all 8.0.4-2 [39.5 kB] Get: 181 http://deb.debian.org/debian trixie/main i386 python3-hatch-vcs all 0.4.0-1 [8336 B] Get: 182 http://deb.debian.org/debian trixie/main i386 python3-idna all 3.6-2 [37.0 kB] Get: 183 http://deb.debian.org/debian trixie/main i386 python3-imagesize all 1.4.1-1 [6688 B] Get: 184 http://deb.debian.org/debian trixie/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 185 http://deb.debian.org/debian trixie/main i386 python3-parso all 0.8.3-1 [67.4 kB] Get: 186 http://deb.debian.org/debian trixie/main i386 python3-typeshed all 0.0~git20231111.6764465-3 [1258 kB] Get: 187 http://deb.debian.org/debian trixie/main i386 python3-jedi all 0.19.1+ds1-1 [691 kB] Get: 188 http://deb.debian.org/debian trixie/main i386 python3-traitlets all 5.5.0-2 [90.7 kB] Get: 189 http://deb.debian.org/debian trixie/main i386 python3-matplotlib-inline all 0.1.6-2 [8652 B] Get: 190 http://deb.debian.org/debian trixie/main i386 python3-ptyprocess all 0.7.0-5 [14.7 kB] Get: 191 http://deb.debian.org/debian trixie/main i386 python3-pexpect all 4.9-2 [55.5 kB] Get: 192 http://deb.debian.org/debian trixie/main i386 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 193 http://deb.debian.org/debian trixie/main i386 python3-prompt-toolkit all 3.0.43-2 [276 kB] Get: 194 http://deb.debian.org/debian trixie/main i386 python3-pygments all 2.17.2+dfsg-1 [818 kB] Get: 195 http://deb.debian.org/debian trixie/main i386 python3-pure-eval all 0.2.2-2 [11.0 kB] Get: 196 http://deb.debian.org/debian trixie/main i386 python3-stack-data all 0.6.3-1 [21.6 kB] Get: 197 http://deb.debian.org/debian trixie/main i386 python3-ipython all 8.20.0-1 [556 kB] Get: 198 http://deb.debian.org/debian trixie/main i386 python3-markupsafe i386 2.1.5-1 [14.4 kB] Get: 199 http://deb.debian.org/debian trixie/main i386 python3-jinja2 all 3.1.3-1 [119 kB] Get: 200 http://deb.debian.org/debian trixie/main i386 python3-rpds-py i386 0.12.0-3 [298 kB] Get: 201 http://deb.debian.org/debian trixie/main i386 python3-referencing all 0.31.0-1 [22.2 kB] Get: 202 http://deb.debian.org/debian trixie/main i386 python3-jsonschema-specifications all 2023.12.1-1 [8976 B] Get: 203 http://deb.debian.org/debian trixie/main i386 python3-jsonschema all 4.19.2-3 [71.3 kB] Get: 204 http://deb.debian.org/debian trixie/main i386 python3-platformdirs all 4.2.1-1 [16.0 kB] Get: 205 http://deb.debian.org/debian trixie/main i386 python3-jupyter-core all 5.3.2-1 [31.5 kB] Get: 206 http://deb.debian.org/debian trixie/main i386 python3-nest-asyncio all 1.5.4-1 [6248 B] Get: 207 http://deb.debian.org/debian trixie/main i386 python3-tornado i386 6.4.0-1 [347 kB] Get: 208 http://deb.debian.org/debian trixie/main i386 python3-py all 1.11.0-2 [88.7 kB] Get: 209 http://deb.debian.org/debian trixie/main i386 python3-zmq i386 24.0.1-5+b1 [362 kB] Get: 210 http://deb.debian.org/debian trixie/main i386 python3-jupyter-client all 7.4.9-2 [103 kB] Get: 211 http://deb.debian.org/debian trixie/main i386 python3-jupyterlab-pygments all 0.2.2-3 [6096 B] Get: 212 http://deb.debian.org/debian trixie/main i386 python3-kiwisolver i386 1.4.5-1 [84.8 kB] Get: 213 http://deb.debian.org/debian trixie/main i386 python3-lxml-html-clean all 0.1.1-1 [13.0 kB] Get: 214 http://deb.debian.org/debian trixie/main i386 python3-pil i386 10.3.0-2 [566 kB] Get: 215 http://deb.debian.org/debian trixie/main i386 python3-tk i386 3.12.3-1 [110 kB] Get: 216 http://deb.debian.org/debian trixie/main i386 python3-pil.imagetk i386 10.3.0-2 [79.7 kB] Get: 217 http://deb.debian.org/debian trixie/main i386 python3-pyparsing all 3.1.2-1 [146 kB] Get: 218 http://deb.debian.org/debian trixie/main i386 python3-matplotlib i386 3.6.3-2 [8059 kB] Get: 219 http://deb.debian.org/debian trixie/main i386 python3-nbformat all 5.9.1-1 [45.1 kB] Get: 220 http://deb.debian.org/debian trixie/main i386 python3-nbclient all 0.8.0-1 [64.0 kB] Get: 221 http://deb.debian.org/debian trixie/main i386 python3-pandocfilters all 1.5.1-1 [23.7 kB] Get: 222 http://deb.debian.org/debian trixie/main i386 python3-tinycss2 all 1.3.0-1 [22.1 kB] Get: 223 http://deb.debian.org/debian trixie/main i386 python3-nbconvert all 6.5.3-5 [163 kB] Get: 224 http://deb.debian.org/debian trixie/main i386 sphinx-common all 7.2.6-6 [702 kB] Get: 225 http://deb.debian.org/debian trixie/main i386 python3-urllib3 all 1.26.18-2 [116 kB] Get: 226 http://deb.debian.org/debian trixie/main i386 python3-requests all 2.31.0+dfsg-2 [68.7 kB] Get: 227 http://deb.debian.org/debian trixie/main i386 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 228 http://deb.debian.org/debian trixie/main i386 python3-sphinx all 7.2.6-6 [552 kB] Get: 229 http://deb.debian.org/debian trixie/main i386 python3-nbsphinx all 0.8.11+ds-1 [36.1 kB] Get: 230 http://deb.debian.org/debian trixie/main i386 python3-pandas-lib i386 2.1.4+dfsg-8 [7491 kB] Get: 231 http://deb.debian.org/debian trixie/main i386 python3-pandas all 2.1.4+dfsg-8 [3015 kB] Get: 232 http://deb.debian.org/debian trixie/main i386 python3-pytest all 7.4.4-3 [239 kB] Get: 233 http://deb.debian.org/debian trixie/main i386 python3-pytest-cov all 5.0.0-1 [26.8 kB] Get: 234 http://deb.debian.org/debian trixie/main i386 python3-sphinx-gallery all 0.10.1-5 [122 kB] Get: 235 http://deb.debian.org/debian trixie/main i386 python3-uncertainties all 3.1.7-2 [77.7 kB] Fetched 133 MB in 2s (86.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libjs-jquery. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19687 files and directories currently installed.) Preparing to unpack .../libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-jquery-hotkeys. Preparing to unpack .../libjs-jquery-hotkeys_0~20130707+git2d51e3a9+dfsg-2.1_all.deb ... Unpacking libjs-jquery-hotkeys (0~20130707+git2d51e3a9+dfsg-2.1) ... 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Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up fonts-lyx (2.4.0~RC4-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:i386 (1.1.0-2+b3) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up libpython3.12-minimal:i386 (3.12.3-1) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:i386 (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libqhull-r8.0:i386 (2020.2-6+b1) ... Setting up libcom-err2:i386 (1.47.1~rc2-1) ... Setting up file (1:5.45-3) ... Setting up libjs-jquery-throttle-debounce (1.1+dfsg.1-2) ... Setting up libjbig0:i386 (2.1-6.1+b1) ... Setting up libelf1t64:i386 (0.191-1+b1) ... Setting up python-babel-localedata (2.14.0-1) ... Setting up libkrb5support0:i386 (1.20.1-6+b1) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Jun 21 23:58:56 UTC 2025. Universal Time is now: Sat Jun 21 23:58:56 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up libpgm-5.3-0t64:i386 (5.3.128~dfsg-2.1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:i386 (2.80.2-1) ... No schema files found: doing nothing. Setting up libblas3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libjpeg62-turbo:i386 (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libfribidi0:i386 (1.0.13-3+b1) ... Setting up libimagequant0:i386 (2.18.0-1+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:i386 (1.6.43-5) ... Setting up libtcl8.6:i386 (8.6.14+dfsg-1) ... Setting up autopoint (0.21-14) ... 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Setting up libxml2:i386 (2.9.14+dfsg-1.3+b3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.3-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3+b1) ... Setting up liblapack3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libxcb1:i386 (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:i386 (1.4.0-0.1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:i386 (2.13.2+dfsg-1+b4) ... Setting up libjs-jquery-metadata (12-4) ... Setting up libjs-jquery-isonscreen (1.2.0-1.1) ... Setting up libgssapi-krb5-2:i386 (1.20.1-6+b1) ... Setting up libjs-sphinxdoc (7.2.6-6) ... Setting up libreadline8t64:i386 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libjs-jquery-tablesorter (1:2.31.3+dfsg1-3) ... Setting up groff-base (1.23.0-4) ... Setting up xml-core (0.19) ... Setting up libxslt1.1:i386 (1.1.35-1+b1) ... Setting up libx11-6:i386 (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:i386 (8.3.0-2+b1) ... Setting up libfontconfig1:i386 (2.15.0-1.1) ... Setting up liblbfgsb0:i386 (3.0+dfsg.4-1+b1) ... Setting up libzmq5:i386 (4.3.5-1+b2) ... Setting up libpython3.12-stdlib:i386 (3.12.3-1) ... Setting up libxrender1:i386 (1:0.9.10-1.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:i386 (3.11.9-1) ... Setting up python3.12 (3.12.3-1) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libraqm0:i386 (0.10.1-1+b1) ... Setting up sphinx-common (7.2.6-6) ... Setting up libxss1:i386 (1:1.2.3-1+b1) ... Setting up libpython3-stdlib:i386 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up libxft2:i386 (2.3.6-1+b1) ... Setting up libtk8.6:i386 (8.6.14-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up python3-pandocfilters (1.5.1-1) ... Setting up python3-markupsafe (2.1.5-1) ... Setting up python3-wheel (0.43.0-1) ... Setting up python3-webencodings (0.5.1-5) ... Setting up python3-platformdirs (4.2.1-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-pil:i386 (10.3.0-2) ... Setting up python3-roman (3.3-3) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.0-1) ... Setting up python3-wcwidth (0.2.13+dfsg1-1) ... Setting up python3-pyproject-hooks (1.0.0-2) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2023.11.17-1) ... Setting up python3-typeshed (0.0~git20231111.6764465-3) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up python3-nest-asyncio (1.5.4-1) ... Setting up python3-dill (0.3.8-1) ... Setting up python3-brotli (1.1.0-2+b3) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.5-1) ... Setting up python3-idna (3.6-2) ... Setting up python3-typing-extensions (4.11.0-1) ... Setting up python3-html5lib (1.1-6) ... Setting up python3-toml (0.10.2-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up python3-urllib3 (1.26.18-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-rpds-py (0.12.0-3) ... Setting up python3-fastjsonschema (2.19.1-1) ... Setting up python3-trove-classifiers (2024.1.31-1) ... Setting up python3-lxml:i386 (5.1.0-1) ... Setting up python3-traitlets (5.5.0-2) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-build (1.2.1-1) ... Setting up python3-pathspec (0.12.1-1) ... Setting up python3-lib2to3 (3.12.3-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-soupsieve (2.5-1) ... Setting up python3-cffi-backend:i386 (1.16.0-2+b2) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-ptyprocess (0.7.0-5) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-entrypoints (0.4-2) ... Setting up python3-prompt-toolkit (3.0.43-2) ... Setting up python3-distutils (3.12.3-1) ... python3.12: can't get files for byte-compilation Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.12-7) ... Setting up python3-attr (23.2.0-2) ... Setting up python3-tornado (6.4.0-1) ... Setting up python3-pure-eval (0.2.2-2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up python3-tinycss2 (1.3.0-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-py (1.11.0-2) ... Setting up python3-parso (0.8.3-1) ... Setting up python3-asteval (0.9.31-1) ... Setting up python3-babel (2.14.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-lz4 (4.0.2+dfsg-1+b3) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up python3-asttokens (2.4.1-1) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-pytest (7.4.4-3) ... Setting up python3-alabaster (0.7.12-1) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3-all (3.11.8-1) ... Setting up python3-coverage (7.2.7+dfsg1-1+b1) ... Setting up python3-tk:i386 (3.12.3-1) ... Setting up python3-pytest-cov (5.0.0-1) ... Setting up python3-setuptools-scm (8.0.4-2) ... Setting up python3-bs4 (4.12.3-1) ... Setting up python3-bleach (6.1.0-2) ... Setting up python3-matplotlib-inline (0.1.6-2) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-pygments (2.17.2+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-pil.imagetk:i386 (10.3.0-2) ... Setting up python3-executing (2.0.1-0.1) ... Setting up python3-pexpect (4.9-2) ... Setting up python3-zmq (24.0.1-5+b1) ... Setting up python3-requests (2.31.0+dfsg-2) ... Setting up python3-numpy (1:1.26.4+ds-8) ... Setting up python3-lxml-html-clean (0.1.1-1) ... Setting up python3-contourpy (1.0.7-3) ... Setting up python3-hatchling (1.24.2-1) ... Setting up python3-stack-data (0.6.3-1) ... Setting up python3-jupyter-core (5.3.2-1) ... Setting up python3-hatch-vcs (0.4.0-1) ... Setting up python3-referencing (0.31.0-1) ... Setting up python3-uncertainties (3.1.7-2) ... /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1707: SyntaxWarning: invalid escape sequence '\p' 'fL': '1234.57 \pm 0.10', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1708: SyntaxWarning: invalid escape sequence '\p' 'FL': '1234.57 \pm 0.10', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1709: SyntaxWarning: invalid escape sequence '\p' 'fL': '1234.57 \pm 0.10', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1710: SyntaxWarning: invalid escape sequence '\p' 'FL': '1234.57 \pm 0.10', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1750: SyntaxWarning: invalid escape sequence '\m' 'PSL': u'-1.2(\mathrm{nan})×10⁻¹²', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1829: SyntaxWarning: invalid escape sequence '\p' 'fL': '1234.567890 \pm 0', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1830: SyntaxWarning: invalid escape sequence '\p' 'FL': '1234.567890 \pm 0', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1995: SyntaxWarning: invalid escape sequence '\i' 'LS': '-\infty(\infty)', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1996: SyntaxWarning: invalid escape sequence '\i' 'L': '-\infty \pm \infty', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:1997: SyntaxWarning: invalid escape sequence '\i' 'LP': u'-\infty±\infty', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:2021: SyntaxWarning: invalid escape sequence '\m' 'LS': '\mathrm{nan}(\infty)', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:2022: SyntaxWarning: invalid escape sequence '\m' 'L': '\mathrm{nan} \pm \infty', /usr/lib/python3/dist-packages/uncertainties/test_uncertainties.py:2023: SyntaxWarning: invalid escape sequence '\m' 'LP': u'\mathrm{nan}±\infty' Setting up dh-python (6.20240422) ... Setting up python3-scipy (1.11.4-6) ... Setting up python3-jedi (0.19.1+ds1-1) ... Setting up pybuild-plugin-pyproject (6.20240422) ... Setting up python3-pandas-lib:i386 (2.1.4+dfsg-8) ... Setting up python3-jupyterlab-pygments (0.2.2-3) ... Setting up python3-pandas (2.1.4+dfsg-8) ... Setting up python3-ipython (8.20.0-1) ... Setting up python3-jupyter-client (7.4.9-2) ... Setting up python3-jsonschema-specifications (2023.12.1-1) ... Setting up python3-jsonschema (4.19.2-3) ... Setting up python3-nbformat (5.9.1-1) ... Setting up python3-nbclient (0.8.0-1) ... Setting up python3-nbconvert (6.5.3-5) ... Setting up python3-fonttools (4.46.0-1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-2) ... Processing triggers for libc-bin (2.38-11) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.20.1+dfsg-3) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.20.1+dfsg-3) ... Setting up python3-sphinx (7.2.6-6) ... Setting up python3-sphinx-gallery (0.10.1-5) ... Setting up python3-nbsphinx (0.8.11+ds-1) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/lmfit-py-1.2.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lmfit-py_1.2.2-3_source.changes dpkg-buildpackage: info: source package lmfit-py dpkg-buildpackage: info: source version 1.2.2-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p "3.12 3.11" rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/lmfit-py-1.2.2' find . -name "*.pickle" -delete rm -rf doc/examples if [ -f lmfit/version.py.orig ] ; then mv lmfit/version.py.orig lmfit/version.py ; fi dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-lmfit.substvars debian/python-lmfit-doc.substvars debian/files rm -fr -- debian/python3-lmfit/ debian/tmp/ debian/python-lmfit-doc/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/build/reproducible-path/lmfit-py-1.2.2' debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/lmfit-py-1.2.2' cp -a lmfit/version.py lmfit/version.py.orig dh_auto_configure pybuild --configure -i python{version} -p "3.12 3.11" make[1]: Leaving directory '/build/reproducible-path/lmfit-py-1.2.2' dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p "3.12 3.11" I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.12_lmfit * Building wheel... running bdist_wheel running build running build_py creating build creating build/lib creating build/lib/lmfit copying lmfit/models.py -> build/lib/lmfit copying lmfit/conf_emcee.py -> build/lib/lmfit copying lmfit/confidence.py -> build/lib/lmfit copying lmfit/model.py -> build/lib/lmfit copying lmfit/__init__.py -> build/lib/lmfit copying lmfit/version.py -> build/lib/lmfit copying lmfit/lineshapes.py -> build/lib/lmfit copying lmfit/parameter.py -> build/lib/lmfit copying lmfit/_ampgo.py -> build/lib/lmfit copying lmfit/minimizer.py -> build/lib/lmfit copying lmfit/jsonutils.py -> build/lib/lmfit copying lmfit/printfuncs.py -> build/lib/lmfit installing to build/bdist.linux-i686/wheel running install running install_lib creating build/bdist.linux-i686 creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/models.py -> build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/conf_emcee.py -> build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/confidence.py -> build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/model.py -> build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/__init__.py -> build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/version.py -> build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/lineshapes.py -> build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/parameter.py -> build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/_ampgo.py -> build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/minimizer.py -> build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/jsonutils.py -> build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/printfuncs.py -> build/bdist.linux-i686/wheel/lmfit running install_egg_info running egg_info writing lmfit.egg-info/PKG-INFO writing dependency_links to lmfit.egg-info/dependency_links.txt writing requirements to lmfit.egg-info/requires.txt writing top-level names to lmfit.egg-info/top_level.txt reading manifest file 'lmfit.egg-info/SOURCES.txt' adding license file 'LICENSE' adding license file 'AUTHORS.txt' writing manifest file 'lmfit.egg-info/SOURCES.txt' Copying lmfit.egg-info to build/bdist.linux-i686/wheel/lmfit-1.2.2.egg-info running install_scripts creating build/bdist.linux-i686/wheel/lmfit-1.2.2.dist-info/WHEEL creating '/build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.12_lmfit/.tmp-fvydl5qe/lmfit-1.2.2-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'lmfit/__init__.py' adding 'lmfit/_ampgo.py' adding 'lmfit/conf_emcee.py' adding 'lmfit/confidence.py' adding 'lmfit/jsonutils.py' adding 'lmfit/lineshapes.py' adding 'lmfit/minimizer.py' adding 'lmfit/model.py' adding 'lmfit/models.py' adding 'lmfit/parameter.py' adding 'lmfit/printfuncs.py' adding 'lmfit/version.py' adding 'lmfit-1.2.2.dist-info/AUTHORS.txt' adding 'lmfit-1.2.2.dist-info/LICENSE' adding 'lmfit-1.2.2.dist-info/METADATA' adding 'lmfit-1.2.2.dist-info/WHEEL' adding 'lmfit-1.2.2.dist-info/top_level.txt' adding 'lmfit-1.2.2.dist-info/RECORD' removing build/bdist.linux-i686/wheel Successfully built lmfit-1.2.2-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module I: pybuild plugin_pyproject:129: Building wheel for python3.11 with "build" module I: pybuild base:311: python3.11 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.11_lmfit * Building wheel... running bdist_wheel running build running build_py copying lmfit/version.py -> build/lib/lmfit installing to build/bdist.linux-i686/wheel running install running install_lib creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/models.py -> build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/conf_emcee.py -> build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/confidence.py -> build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/model.py -> build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/__init__.py -> build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/version.py -> build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/lineshapes.py -> build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/parameter.py -> build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/_ampgo.py -> build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/minimizer.py -> build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/jsonutils.py -> build/bdist.linux-i686/wheel/lmfit copying build/lib/lmfit/printfuncs.py -> build/bdist.linux-i686/wheel/lmfit running install_egg_info running egg_info writing lmfit.egg-info/PKG-INFO writing dependency_links to lmfit.egg-info/dependency_links.txt writing requirements to lmfit.egg-info/requires.txt writing top-level names to lmfit.egg-info/top_level.txt reading manifest file 'lmfit.egg-info/SOURCES.txt' adding license file 'LICENSE' adding license file 'AUTHORS.txt' writing manifest file 'lmfit.egg-info/SOURCES.txt' Copying lmfit.egg-info to build/bdist.linux-i686/wheel/lmfit-1.2.2.egg-info running install_scripts creating build/bdist.linux-i686/wheel/lmfit-1.2.2.dist-info/WHEEL creating '/build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.11_lmfit/.tmp-q76l3c5s/lmfit-1.2.2-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'lmfit/__init__.py' adding 'lmfit/_ampgo.py' adding 'lmfit/conf_emcee.py' adding 'lmfit/confidence.py' adding 'lmfit/jsonutils.py' adding 'lmfit/lineshapes.py' adding 'lmfit/minimizer.py' adding 'lmfit/model.py' adding 'lmfit/models.py' adding 'lmfit/parameter.py' adding 'lmfit/printfuncs.py' adding 'lmfit/version.py' adding 'lmfit-1.2.2.dist-info/AUTHORS.txt' adding 'lmfit-1.2.2.dist-info/LICENSE' adding 'lmfit-1.2.2.dist-info/METADATA' adding 'lmfit-1.2.2.dist-info/WHEEL' adding 'lmfit-1.2.2.dist-info/top_level.txt' adding 'lmfit-1.2.2.dist-info/RECORD' removing build/bdist.linux-i686/wheel Successfully built lmfit-1.2.2-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.11 with "installer" module dh_auto_test -O--buildsystem=pybuild pybuild --test --test-pytest -i python{version} -p "3.12 3.11" I: pybuild pybuild:308: cp -r NIST_STRD examples /build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.12_lmfit/build I: pybuild base:311: cd /build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.12_lmfit/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-7.4.4, pluggy-1.5.0 rootdir: /build/reproducible-path/lmfit-py-1.2.2 configfile: setup.cfg plugins: cov-5.0.0 collected 654 items tests/test_1variable.py . [ 0%] tests/test_NIST_Strd.py ........................... [ 4%] tests/test_algebraic_constraint.py .... [ 4%] tests/test_ampgo.py ............ [ 6%] tests/test_basicfit.py . [ 6%] tests/test_basinhopping.py ..... [ 7%] tests/test_bounded_jacobian.py .. [ 7%] tests/test_bounds.py . [ 8%] tests/test_brute.py ............ [ 9%] tests/test_builtin_models.py ....... [ 11%] tests/test_confidence.py ............. [ 12%] tests/test_covariance_matrix.py ..ssssssss. [ 14%] tests/test_custom_independentvar.py . [ 14%] tests/test_default_kws.py . [ 14%] tests/test_dual_annealing.py ... [ 15%] tests/test_itercb.py .................... [ 18%] tests/test_jsonutils.py ................. [ 21%] tests/test_least_squares.py ..... [ 21%] tests/test_lineshapes.py ............................................... [ 29%] .......................................... [ 35%] tests/test_manypeaks_speed.py . [ 35%] tests/test_max_nfev.py ........................... [ 39%] tests/test_minimizer.py .ssssssssssssss [ 42%] tests/test_model.py .................................................... [ 50%] ........................................................................ [ 61%] .....s....s............................................. [ 69%] tests/test_model_saveload.py ...................... [ 72%] tests/test_model_uncertainties.py ..... [ 73%] tests/test_models.py ........ [ 74%] tests/test_multidatasets.py . [ 75%] tests/test_nose.py ...................s...... [ 79%] tests/test_pandas.py .. [ 79%] tests/test_parameter.py ................................................ [ 86%] .......... [ 88%] tests/test_parameters.py ............................... [ 92%] tests/test_params_uvars.py ... [ 93%] tests/test_printfuncs.py ............................s...... [ 98%] tests/test_shgo.py ...... [ 99%] tests/test_stepmodel.py .. [100%] =============================== warnings summary =============================== tests/test_manypeaks_speed.py:15 /build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.12_lmfit/build/tests/test_manypeaks_speed.py:15: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.flaky(max_runs=5) .pybuild/cpython3_3.12_lmfit/build/tests/test_jsonutils.py::test_encode_decode_pandas /build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.12_lmfit/build/lmfit/jsonutils.py:130: FutureWarning: Passing literal json to 'read_json' is deprecated and will be removed in a future version. To read from a literal string, wrap it in a 'StringIO' object. out = read_json(obj['value']) .pybuild/cpython3_3.12_lmfit/build/tests/test_jsonutils.py::test_encode_decode_pandas /build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.12_lmfit/build/lmfit/jsonutils.py:132: FutureWarning: Passing literal json to 'read_json' is deprecated and will be removed in a future version. To read from a literal string, wrap it in a 'StringIO' object. out = read_json(obj['value'], typ='series') .pybuild/cpython3_3.12_lmfit/build/tests/test_model.py::test_make_params_valuetypes /build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.12_lmfit/build/lmfit/model.py:686: ComplexWarning: Casting complex values to real discards the imaginary part dval = {'value': float(val)} .pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_coerce_float64 .pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_scalar_minimizers /build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.12_lmfit/build/lmfit/minimizer.py:979: OptimizeWarning: Unknown solver options: maxiter ret = scipy_minimize(self.penalty, variables, **fmin_kws) .pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_bounds_length /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_custom_pool /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_float /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_init_with_chain /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_method_kwarg /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_ntemps /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_output /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_partial_bounds /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_reuse_sampler /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.12_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_seed /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ---------- coverage: platform linux, python 3.12.3-final-0 ----------- Coverage HTML written to dir htmlcov =========== 628 passed, 26 skipped, 17 warnings in 165.87s (0:02:45) =========== I: pybuild pybuild:334: rm -fr /build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.12_lmfit/build/NIST_STRD /build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.12_lmfit/build/examples; find /build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.12_lmfit/build -name "*.sav" -delete I: pybuild pybuild:308: cp -r NIST_STRD examples /build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.11_lmfit/build I: pybuild base:311: cd /build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.11_lmfit/build; python3.11 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-7.4.4, pluggy-1.5.0 rootdir: /build/reproducible-path/lmfit-py-1.2.2 configfile: setup.cfg plugins: cov-5.0.0 collected 654 items tests/test_1variable.py . [ 0%] tests/test_NIST_Strd.py ........................... [ 4%] tests/test_algebraic_constraint.py .... [ 4%] tests/test_ampgo.py ............ [ 6%] tests/test_basicfit.py . [ 6%] tests/test_basinhopping.py ..... [ 7%] tests/test_bounded_jacobian.py .. [ 7%] tests/test_bounds.py . [ 8%] tests/test_brute.py ............ [ 9%] tests/test_builtin_models.py ....... [ 11%] tests/test_confidence.py ............. [ 12%] tests/test_covariance_matrix.py ..ssssssss. [ 14%] tests/test_custom_independentvar.py . [ 14%] tests/test_default_kws.py . [ 14%] tests/test_dual_annealing.py ... [ 15%] tests/test_itercb.py .................... [ 18%] tests/test_jsonutils.py ................. [ 21%] tests/test_least_squares.py ..... [ 21%] tests/test_lineshapes.py ............................................... [ 29%] .......................................... [ 35%] tests/test_manypeaks_speed.py . [ 35%] tests/test_max_nfev.py ........................... [ 39%] tests/test_minimizer.py .ssssssssssssss [ 42%] tests/test_model.py .................................................... [ 50%] ........................................................................ [ 61%] .....s....s............................................. [ 69%] tests/test_model_saveload.py ...................... [ 72%] tests/test_model_uncertainties.py ..... [ 73%] tests/test_models.py ........ [ 74%] tests/test_multidatasets.py . [ 75%] tests/test_nose.py ...................s...... [ 79%] tests/test_pandas.py .. [ 79%] tests/test_parameter.py ................................................ [ 86%] .......... [ 88%] tests/test_parameters.py ............................... [ 92%] tests/test_params_uvars.py ... [ 93%] tests/test_printfuncs.py ............................s...... [ 98%] tests/test_shgo.py ...... [ 99%] tests/test_stepmodel.py .. [100%] =============================== warnings summary =============================== tests/test_manypeaks_speed.py:15 /build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.11_lmfit/build/tests/test_manypeaks_speed.py:15: PytestUnknownMarkWarning: Unknown pytest.mark.flaky - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.flaky(max_runs=5) .pybuild/cpython3_3.11_lmfit/build/tests/test_jsonutils.py::test_encode_decode_pandas /build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.11_lmfit/build/lmfit/jsonutils.py:130: FutureWarning: Passing literal json to 'read_json' is deprecated and will be removed in a future version. To read from a literal string, wrap it in a 'StringIO' object. out = read_json(obj['value']) .pybuild/cpython3_3.11_lmfit/build/tests/test_jsonutils.py::test_encode_decode_pandas /build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.11_lmfit/build/lmfit/jsonutils.py:132: FutureWarning: Passing literal json to 'read_json' is deprecated and will be removed in a future version. To read from a literal string, wrap it in a 'StringIO' object. out = read_json(obj['value'], typ='series') .pybuild/cpython3_3.11_lmfit/build/tests/test_model.py::test_make_params_valuetypes /build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.11_lmfit/build/lmfit/model.py:686: ComplexWarning: Casting complex values to real discards the imaginary part dval = {'value': float(val)} .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_coerce_float64 .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_scalar_minimizers /build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.11_lmfit/build/lmfit/minimizer.py:979: OptimizeWarning: Unknown solver options: maxiter ret = scipy_minimize(self.penalty, variables, **fmin_kws) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_bounds_length /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_custom_pool /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_float /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_init_with_chain /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_method_kwarg /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_ntemps /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_output /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_partial_bounds /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_reuse_sampler /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) .pybuild/cpython3_3.11_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_emcee_seed /usr/lib/python3.11/unittest/case.py:678: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) return self.run(*args, **kwds) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ---------- coverage: platform linux, python 3.11.9-final-0 ----------- Coverage HTML written to dir htmlcov =========== 628 passed, 26 skipped, 17 warnings in 203.11s (0:03:23) =========== I: pybuild pybuild:334: rm -fr /build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.11_lmfit/build/NIST_STRD /build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.11_lmfit/build/examples; find /build/reproducible-path/lmfit-py-1.2.2/.pybuild/cpython3_3.11_lmfit/build -name "*.sav" -delete rm -fr -- /tmp/dh-xdg-rundir-IRYQJI3w create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-lmfit.substvars debian/python-lmfit-doc.substvars rm -fr -- debian/.debhelper/generated/python3-lmfit/ debian/python3-lmfit/ debian/tmp/ debian/.debhelper/generated/python-lmfit-doc/ debian/python-lmfit-doc/ dh_auto_install -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/lmfit-py-1.2.2/debian/tmp pybuild --install -i python{version} -p "3.12 3.11" --dest-dir /build/reproducible-path/lmfit-py-1.2.2/debian/tmp I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir I: pybuild plugin_pyproject:178: Copying package built for python3.11 to destdir rm -f debian/python-lmfit-doc.debhelper.log debian/python3-lmfit.debhelper.log debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/reproducible-path/lmfit-py-1.2.2' mv examples/example_emcee_Model_interface.py examples/nodoc_example_emcee_Model_interface.py cp doc/sphinx/ext_mathjax.py doc/extensions.py PYTHONPATH=. http_proxy='localhost' python3 -m sphinx -N -bhtml -D mathjax_path="/usr/share/javascript/mathjax/MathJax.js" doc/ .pybuild/html # HTML generator Running Sphinx v7.2.6 /usr/lib/python3/dist-packages/sphinx_gallery/sphinx_compatibility.py:71: RemovedInSphinx80Warning: The alias 'sphinx.util.status_iterator' is deprecated, use 'sphinx.util.display.status_iterator' instead. Check CHANGES for Sphinx API modifications. status_iterator = sphinx.util.status_iterator making output directory... done loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://numpy.org/doc/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) loading intersphinx inventory from https://matplotlib.org/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) loading intersphinx inventory from https://matplotlib.org/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) loading intersphinx inventory from https://pandas.pydata.org/pandas-docs/stable/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://pandas.pydata.org/pandas-docs/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='pandas.pydata.org', port=443): Max retries exceeded with url: /pandas-docs/stable/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) loading intersphinx inventory from https://docs.sympy.org/latest/objects.inv... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.sympy.org/latest/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.sympy.org', port=443): Max retries exceeded with url: /latest/objects.inv (Caused by NewConnectionError(': Failed to establish a new connection: [Errno -3] Temporary failure in name resolution')) generating gallery... Using Sphinx-Gallery to convert rst text blocks to markdown for .ipynb files. generating gallery for examples... [ 6%] example_use_pandas.py generating gallery for examples... [ 11%] example_expression_model.py generating gallery for examples... [ 17%] example_fit_with_inequality.py generating gallery for examples... [ 22%] example_diffev.py generating gallery for examples... [ 28%] example_fit_with_bounds.py generating gallery for examples... [ 33%] example_fit_with_algebraic_constraint.py generating gallery for examples... [ 39%] example_reduce_fcn.py generating gallery for examples... [ 44%] example_sympy.py generating gallery for examples... [ 50%] example_fit_multi_datasets.py generating gallery for examples... [ 56%] example_Model_interface.py generating gallery for examples... [ 61%] example_fit_with_derivfunc.py generating gallery for examples... [ 67%] example_detect_outliers.py generating gallery for examples... [ 72%] nodoc_example_emcee_Model_interface.py generating gallery for examples... [ 78%] example_complex_resonator_model.py generating gallery for examples... [ 83%] lmfit_emcee_model_selection.py generating gallery for examples... [ 89%] example_confidence_interval.py generating gallery for examples... [ 94%] example_two_dimensional_peak.py generating gallery for examples... [100%] example_brute.py computation time summary: - ../examples/example_brute.py: 115.40 sec 0.0 MB - ../examples/example_confidence_interval.py: 110.89 sec 0.0 MB - ../examples/example_two_dimensional_peak.py: 9.75 sec 0.0 MB - ../examples/example_sympy.py: 4.56 sec 0.0 MB - ../examples/example_detect_outliers.py: 2.81 sec 0.0 MB - ../examples/example_complex_resonator_model.py: 1.46 sec 0.0 MB - ../examples/example_Model_interface.py: 1.26 sec 0.0 MB - ../examples/example_diffev.py: 1.18 sec 0.0 MB - ../examples/example_fit_multi_datasets.py: 1.07 sec 0.0 MB - ../examples/example_fit_with_inequality.py: 0.84 sec 0.0 MB - ../examples/example_reduce_fcn.py: 0.82 sec 0.0 MB - ../examples/example_fit_with_bounds.py: 0.69 sec 0.0 MB - ../examples/example_use_pandas.py: 0.67 sec 0.0 MB - ../examples/example_fit_with_algebraic_constraint.py: 0.61 sec 0.0 MB - ../examples/example_fit_with_derivfunc.py: 0.51 sec 0.0 MB - ../examples/example_expression_model.py: 0.48 sec 0.0 MB - ../examples/lmfit_emcee_model_selection.py: 0.00 sec 0.0 MB - ../examples/nodoc_example_emcee_Model_interface.py: 0.00 sec 0.0 MB building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 14 source files that are out of date updating environment: [new config] 34 added, 0 changed, 0 removed reading sources... [ 3%] bounds reading sources... [ 6%] builtin_models reading sources... [ 9%] confidence reading sources... [ 12%] constraints reading sources... [ 15%] contents reading sources... [ 18%] examples/example_Model_interface reading sources... [ 21%] examples/example_brute reading sources... [ 24%] examples/example_complex_resonator_model reading sources... [ 26%] examples/example_confidence_interval reading sources... [ 29%] examples/example_detect_outliers reading sources... [ 32%] examples/example_diffev reading sources... [ 35%] examples/example_expression_model reading sources... [ 38%] examples/example_fit_multi_datasets reading sources... [ 41%] examples/example_fit_with_algebraic_constraint reading sources... [ 44%] examples/example_fit_with_bounds reading sources... [ 47%] examples/example_fit_with_derivfunc reading sources... [ 50%] examples/example_fit_with_inequality reading sources... [ 53%] examples/example_reduce_fcn reading sources... [ 56%] examples/example_sympy reading sources... [ 59%] examples/example_two_dimensional_peak reading sources... [ 62%] examples/example_use_pandas reading sources... [ 65%] examples/index reading sources... [ 68%] examples/lmfit_emcee_model_selection reading sources... [ 71%] examples/nodoc_example_emcee_Model_interface reading sources... [ 74%] examples/sg_execution_times reading sources... [ 76%] faq reading sources... [ 79%] fitting reading sources... [ 82%] index reading sources... [ 85%] installation reading sources... [ 88%] intro reading sources... [ 91%] model reading sources... [ 94%] parameters reading sources... [ 97%] support reading sources... [100%] whatsnew /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:27: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: from lmfit.models import LinearModel, LorentzianModel peak = LorentzianModel() background = LinearModel() model = peak + background /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:289: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit.models import ExpressionModel mod = ExpressionModel('off + amp * exp(-x/x0) * sin(x*phase)') /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:303: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, linspace, sin x = linspace(0, 10, 501) params = mod.make_params(off=0.25, amp=1.0, x0=2.0, phase=0.04) y = mod.eval(params, x=x) /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:324: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: script = """ def mycurve(x, amp, cen, sig): loren = lorentzian(x, amplitude=amp, center=cen, sigma=sig) gauss = gaussian(x, amplitude=amp, center=cen, sigma=sig) return log(loren) * gradient(gauss) / gradient(x) """ /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:335: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = ExpressionModel('mycurve(x, height, mid, wid)', init_script=script, independent_vars=['x']) /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:354: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: from numpy import loadtxt from lmfit.models import GaussianModel data = loadtxt('test_peak.dat') x = data[:, 0] y = data[:, 1] mod = GaussianModel() pars = mod.guess(y, x=x) out = mod.fit(y, pars, x=x) print(out.fit_report(min_correl=0.25)) /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:374: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report(min_correl=0.25)) /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:385: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import matplotlib as mpl mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' import matplotlib.pyplot as plt plt.plot(x, y, '-') plt.plot(x, out.best_fit, '-', label='Gaussian Model') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:406: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit.models import LorentzianModel mod = LorentzianModel() /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:415: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: pars = mod.guess(y, x=x) out = mod.fit(y, pars, x=x) print(out.fit_report(min_correl=0.25)) /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:424: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, '-') plt.plot(x, out.best_fit, '-', label='Lorentzian Model') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:435: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit.models import VoigtModel mod = VoigtModel() /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:443: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: pars = mod.guess(y, x=x) out = mod.fit(y, pars, x=x) print(out.fit_report(min_correl=0.25)) /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:454: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y, '-') axes[0].plot(x, out.best_fit, '-', label='Voigt Model\ngamma constrained') axes[0].legend() # free gamma parameter pars['gamma'].set(value=0.7, vary=True, expr='') out_gamma = mod.fit(y, pars, x=x) axes[1].plot(x, y, '-') axes[1].plot(x, out_gamma.best_fit, '-', label='Voigt Model\ngamma unconstrained') axes[1].legend() plt.show() /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:485: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out_gamma.fit_report(min_correl=0.25)) /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:522: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_builtinmodels_stepmodel.py :hide-output: /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:533: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report()) /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:540: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y) plt.plot(x, out.init_fit, '--', label='initial fit') plt.plot(x, out.best_fit, '-', label='best fit') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:563: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_builtinmodels_nistgauss.py :hide-output: /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:579: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report()) /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:590: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y) axes[0].plot(x, init, '--', label='initial fit') axes[0].plot(x, out.best_fit, '-', label='best fit') axes[0].legend() comps = out.eval_components(x=x) axes[1].plot(x, y) axes[1].plot(x, comps['g1_'], '--', label='Gaussian component 1') axes[1].plot(x, comps['g2_'], '--', label='Gaussian component 2') axes[1].plot(x, comps['exp_'], '--', label='Exponential component') axes[1].legend() plt.show() /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:632: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_builtinmodels_nistgauss2.py :hide-code: :hide-output: /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:638: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y) plt.plot(x, out.init_fit, '--', label='initial fit') plt.plot(x, out.best_fit, '-', label='best fit') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:652: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report()) /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:689: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: import numpy as np import matplotlib.pyplot as plt from lmfit.models import SplineModel, GaussianModel data = np.loadtxt('test_splinepeak.dat') x = data[:, 0] y = data[:, 1] plt.plot(x, y, label='data') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:706: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, label='data') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:717: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: model = GaussianModel(prefix='peak_') params = model.make_params(amplitude=8, center=16, sigma=1) /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:731: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: knot_xvals = np.array([1, 3, 5, 7, 9, 11, 13, 19, 21, 23, 25]) bkg = SplineModel(prefix='bkg_', xknots=knot_xvals) params.update(bkg.guess(y, x)) /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:751: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: model = model + bkg params['peak_amplitude'].min = 0 params['peak_center'].min = 10 params['peak_center'].max = 20 out = model.fit(y, params, x=x) print(out.fit_report(min_correl=0.3)) /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:770: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(out.fit_report(min_correl=0.3)) /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:786: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: comps = out.eval_components() plt.plot(x, out.best_fit, label='best fit') plt.plot(x, comps['bkg_'], label='background') plt.plot(x, comps['peak_'], label='peak') plt.legend() /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:797: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, label='data') plt.plot(x, out.best_fit, label='best fit') plt.plot(x, comps['bkg_'], label='background') plt.plot(x, comps['peak_'], label='peak') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:810: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: knot_yvals = np.array([o.value for o in out.params.values() if o.name.startswith('bkg')]) plt.plot(knot_xvals, knot_yvals, 'o', color='black', label='spline knots values') /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:818: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, label='data') plt.plot(x, out.best_fit, label='best fit') plt.plot(x, comps['bkg_'], label='background') plt.plot(x, comps['peak_'], label='peak') knot_yvals = np.array([o.value for o in out.params.values() if o.name.startswith('bkg')]) plt.plot(knot_xvals, knot_yvals, 'o', color='black', label='spline knots values') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:836: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: knot_xvals1 = np.array([1, 3, 5, 7, 9, 11, 13, 19, 21, 23, 25]) knot_xvals2 = np.array([1, 3, 5, 7, 9, 11, 13, 16, 19, 21, 23, 25]) knot_xvals3 = np.array([1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 25]) /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:877: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: plt.plot(x, y, 'o', label='data') for nknots in (10, 15, 20, 25): model = SplineModel(prefix='bkg_', xknots=np.linspace(0, 25, nknots)) params = model.guess(y, x) out = model.fit(y, params, x=x) plt.plot(x, out.best_fit, label=f'best-fit ({nknots} knots)') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.2.2/doc/builtin_models.rst:894: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, 'o', label='data') for nknots in (10, 15, 20, 25): model = SplineModel(prefix='bkg_', xknots=np.linspace(0, 25, nknots)) params = model.guess(y, x) out = model.fit(y, params, x=x) plt.plot(x, out.best_fit, label=f'best-fit ({nknots} knots)') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.2.2/doc/confidence.rst:45: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np import lmfit x = np.linspace(0.3, 10, 100) np.random.seed(0) y = 1/(0.1*x) + 2 + 0.1*np.random.randn(x.size) pars = lmfit.Parameters() pars.add_many(('a', 0.1), ('b', 1)) def residual(p): return 1/(p['a']*x) + p['b'] - y /build/reproducible-path/lmfit-py-1.2.2/doc/confidence.rst:66: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mini = lmfit.Minimizer(residual, pars) result = mini.minimize() print(lmfit.fit_report(result.params)) /build/reproducible-path/lmfit-py-1.2.2/doc/confidence.rst:76: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ci = lmfit.conf_interval(mini, result) lmfit.printfuncs.report_ci(ci) /build/reproducible-path/lmfit-py-1.2.2/doc/confidence.rst:103: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: for p in result.params: result.params[p].stderr = abs(result.params[p].value * 0.1) /build/reproducible-path/lmfit-py-1.2.2/doc/confidence.rst:142: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: # import matplotlib.pyplot as plt import numpy as np from lmfit import conf_interval, conf_interval2d, report_ci from lmfit.lineshapes import gaussian from lmfit.models import GaussianModel, LinearModel sigma_levels = [1, 2, 3] rng = np.random.default_rng(seed=102) ######################### # set up data -- deliberately adding imperfections and # a small amount of non-Gaussian noise npts = 501 x = np.linspace(1, 100, num=npts) noise = rng.normal(scale=0.3, size=npts) + 0.2*rng.f(3, 9, size=npts) y = (gaussian(x, amplitude=83, center=47., sigma=5.) + 0.02*x + 4 + 0.25*np.cos((x-20)/8.0) + noise) mod = GaussianModel() + LinearModel() params = mod.make_params(amplitude=100, center=50, sigma=5, slope=0, intecept=2) out = mod.fit(y, params, x=x) print(out.fit_report()) ######################### # run conf_intervale, print report sigma_levels = [1, 2, 3] ci = conf_interval(out, out, sigmas=sigma_levels) print("## Confidence Report:") report_ci(ci) /build/reproducible-path/lmfit-py-1.2.2/doc/confidence.rst:187: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ######################### # plot initial fit colors = ('#2030b0', '#b02030', '#207070') fig, axes = plt.subplots(2, 3, figsize=(15, 9.5)) axes[0, 0].plot(x, y, 'o', markersize=3, label='data', color=colors[0]) axes[0, 0].plot(x, out.best_fit, label='fit', color=colors[1]) axes[0, 0].set_xlabel('x') axes[0, 0].set_ylabel('y') axes[0, 0].legend() aix, aiy = 0, 0 nsamples = 30 for pairs in (('sigma', 'amplitude'), ('intercept', 'amplitude'), ('slope', 'intercept'), ('slope', 'center'), ('sigma', 'center')): xpar, ypar = pairs print("Generating chi-square map for ", pairs) c_x, c_y, dchi2_mat = conf_interval2d(out, out, xpar, ypar, nsamples, nsamples, nsigma=3.5, chi2_out=True) # sigma matrix: sigma increases chi_square # from chi_square_best # to chi_square + sigma**2 * reduced_chi_square # so: sigma = sqrt(dchi2 / reduced_chi_square) sigma_mat = np.sqrt(abs(dchi2_mat)/out.redchi) # you could calculate the matrix of probabilities from sigma as: # prob_mat = np.erf(sigma_mat/np.sqrt(2)) aix += 1 if aix == 2: aix = 0 aiy += 1 ax = axes[aix, aiy] cnt = ax.contour(c_x, c_y, sigma_mat, levels=sigma_levels, colors=colors, linestyles='-') ax.clabel(cnt, inline=True, fmt="$\sigma=%.0f$", fontsize=13) # draw boxes for estimated uncertaties: # dotted : scaled stderr from initial fit # dashed : values found from conf_interval() xv = out.params[xpar].value xs = out.params[xpar].stderr yv = out.params[ypar].value ys = out.params[ypar].stderr cix = ci[xpar] ciy = ci[ypar] nc = len(sigma_levels) for i in sigma_levels: # dotted line: scaled stderr ax.plot((xv-i*xs, xv+i*xs, xv+i*xs, xv-i*xs, xv-i*xs), (yv-i*ys, yv-i*ys, yv+i*ys, yv+i*ys, yv-i*ys), linestyle='dotted', color=colors[i-1]) # dashed line: refined uncertainties from conf_interval xsp, xsm = cix[nc+i][1], cix[nc-i][1] ysp, ysm = ciy[nc+i][1], ciy[nc-i][1] ax.plot((xsm, xsp, xsp, xsm, xsm), (ysm, ysm, ysp, ysp, ysm), linestyle='dashed', color=colors[i-1]) ax.set_xlabel(xpar) ax.set_ylabel(ypar) ax.grid(True, color='#d0d0d0') plt.show() # /build/reproducible-path/lmfit-py-1.2.2/doc/confidence.rst:284: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import warnings warnings.filterwarnings(action="ignore") import matplotlib as mpl import matplotlib.pyplot as plt mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' /build/reproducible-path/lmfit-py-1.2.2/doc/confidence.rst:295: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_confidence_advanced.py :hide-output: /build/reproducible-path/lmfit-py-1.2.2/doc/confidence.rst:300: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: lmfit.report_fit(out2.params, min_correl=0.5) print('') lmfit.printfuncs.report_ci(ci) /build/reproducible-path/lmfit-py-1.2.2/doc/confidence.rst:317: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) cx, cy, grid = lmfit.conf_interval2d(mini, out2, 'a1', 't2', 30, 30) ctp = axes[0].contourf(cx, cy, grid, np.linspace(0, 1, 11)) fig.colorbar(ctp, ax=axes[0]) axes[0].set_xlabel('a1') axes[0].set_ylabel('t2') cx, cy, grid = lmfit.conf_interval2d(mini, out2, 'a2', 't2', 30, 30) ctp = axes[1].contourf(cx, cy, grid, np.linspace(0, 1, 11)) fig.colorbar(ctp, ax=axes[1]) axes[1].set_xlabel('a2') axes[1].set_ylabel('t2') plt.show() /build/reproducible-path/lmfit-py-1.2.2/doc/confidence.rst:351: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) cx1, cy1, prob = trace['a1']['a1'], trace['a1']['t2'], trace['a1']['prob'] cx2, cy2, prob2 = trace['t2']['t2'], trace['t2']['a1'], trace['t2']['prob'] axes[0].scatter(cx1, cy1, c=prob, s=30) axes[0].set_xlabel('a1') axes[0].set_ylabel('t2') axes[1].scatter(cx2, cy2, c=prob2, s=30) axes[1].set_xlabel('t2') axes[1].set_ylabel('a1') plt.show() /build/reproducible-path/lmfit-py-1.2.2/doc/confidence.rst:370: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) cx1, cy1, prob = trace['a1']['a1'], trace['a1']['t2'], trace['a1']['prob'] cx2, cy2, prob2 = trace['t2']['t2'], trace['t2']['a1'], trace['t2']['prob'] axes[0].scatter(cx1, cy1, c=prob, s=30) axes[0].set_xlabel('a1') axes[0].set_ylabel('t2') axes[1].scatter(cx2, cy2, c=prob2, s=30) axes[1].set_xlabel('t2') axes[1].set_ylabel('a1') plt.show() /build/reproducible-path/lmfit-py-1.2.2/doc/constraints.rst:43: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import Parameters pars = Parameters() pars.add('frac_curve1', value=0.5, min=0, max=1) pars.add('frac_curve2', expr='1-frac_curve1') /build/reproducible-path/lmfit-py-1.2.2/doc/constraints.rst:85: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars = Parameters() pars.add('amp_1', value=0.5, min=0, max=1) pars.add('cen_1', value=2.2) pars.add('wid_1', value=0.2) /build/reproducible-path/lmfit-py-1.2.2/doc/constraints.rst:94: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars.add('amp_2', expr='(2.0 - amp_1**2)') pars.add('wid_2', expr='sqrt(pi)*wid_1') pars.add('cen_2', expr='cen_1 * wid_2 / max(wid_1, 0.001)') /build/reproducible-path/lmfit-py-1.2.2/doc/constraints.rst:103: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars.add('param_a', value=1) pars.add('param_b', value=2) pars.add('test_val', value=100) pars.add('bounded', expr='param_a if test_val/2. > 100 else param_b') /build/reproducible-path/lmfit-py-1.2.2/doc/constraints.rst:113: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: if pars['test_val'].value/2. > 100: bounded = pars['param_a'].value else: bounded = pars['param_b'].value /build/reproducible-path/lmfit-py-1.2.2/doc/constraints.rst:132: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars = Parameters() pars.add('x', value=5, vary=True) pars.add('delta', value=5, max=10, vary=True) pars.add('y', expr='delta-x') /build/reproducible-path/lmfit-py-1.2.2/doc/constraints.rst:175: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def mylorentzian(x, amp, cen, wid): "lorentzian function: wid = half-width at half-max" return (amp / (1 + ((x-cen) / wid)**2)) /build/reproducible-path/lmfit-py-1.2.2/doc/constraints.rst:185: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import Parameters pars = Parameters() pars._asteval.symtable['lorentzian'] = mylorentzian /build/reproducible-path/lmfit-py-1.2.2/doc/constraints.rst:194: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import Minimizer def userfcn(x, params): pass fitter = Minimizer(userfcn, pars) /build/reproducible-path/lmfit-py-1.2.2/doc/constraints.rst:209: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: pars = Parameters() fitter = Minimizer(userfcn, pars) fitter.params._asteval.symtable['lorentzian'] = mylorentzian /build/reproducible-path/lmfit-py-1.2.2/doc/faq.rst:249: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np import lmfit def quad_off(x, x0, a, b, c): model = a + b * x**2 model[np.where(x < x0)] = c return model x0 = 19 b = 0.02 a = 2.0 xdat = np.linspace(0, 100, 101) ydat = a + b * xdat**2 ydat[np.where(xdat < x0)] = a + b * x0**2 ydat += np.random.normal(scale=0.1, size=xdat.size) mod = lmfit.Model(quad_off) pars = mod.make_params(x0=22, a=1, b=1, c=1) result = mod.fit(ydat, pars, x=xdat) print(result.fit_report()) /build/reproducible-path/lmfit-py-1.2.2/doc/faq.rst:292: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np from scipy.special import erf import lmfit def quad_off(x, x0, a, b, c): m1 = a + b * x**2 m2 = c * np.ones(len(x)) # step up from 0 to 1 at x0: (erf(x-x0)+1)/2 # step down from 1 to 0 at x0: (1-erf(x-x0))/2 model = m1 * (erf(x-x0)+1)/2 + m2 * (1-erf(x-x0))/2 return model x0 = 19 b = 0.02 a = 2.0 xdat = np.linspace(0, 100, 101) ydat = a + b * xdat**2 ydat[np.where(xdat < x0)] = a + b * x0**2 ydat += np.random.normal(scale=0.1, size=xdat.size) mod = lmfit.Model(quad_off) pars = mod.make_params(x0=22, a=1, b=1, c=1) result = mod.fit(ydat, pars, x=xdat) print(result.fit_report()) /build/reproducible-path/lmfit-py-1.2.2/doc/fitting.rst:64: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, sign, sin, pi def residual(pars, x, data=None, eps=None): # unpack parameters: extract .value attribute for each parameter parvals = pars.valuesdict() period = parvals['period'] shift = parvals['shift'] decay = parvals['decay'] if abs(shift) > pi/2: shift = shift - sign(shift)*pi if abs(period) < 1.e-10: period = sign(period)*1.e-10 model = parvals['amp'] * sin(shift + x/period) * exp(-x*x*decay*decay) if data is None: return model if eps is None: return model - data return (model-data) / eps /build/reproducible-path/lmfit-py-1.2.2/doc/fitting.rst:97: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: from lmfit import Parameter, Parameters params = Parameters() /build/reproducible-path/lmfit-py-1.2.2/doc/fitting.rst:104: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params['period'] = Parameter(name='period', value=2, min=1.e-10) /build/reproducible-path/lmfit-py-1.2.2/doc/fitting.rst:110: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: period = 1 /build/reproducible-path/lmfit-py-1.2.2/doc/fitting.rst:115: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: if abs(period) < 1.e-10: period = sign(period)*1.e-10 /build/reproducible-path/lmfit-py-1.2.2/doc/fitting.rst:493: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_fitting_withreport.py :hide-output: /build/reproducible-path/lmfit-py-1.2.2/doc/fitting.rst:498: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(fit_report(out)) /build/reproducible-path/lmfit-py-1.2.2/doc/fitting.rst:507: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('-------------------------------') print('Parameter Value Stderr') for name, param in out.params.items(): print(f'{name:7s} {param.value:11.5f} {param.stderr:11.5f}') /build/reproducible-path/lmfit-py-1.2.2/doc/fitting.rst:615: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import warnings warnings.filterwarnings(action="ignore") import matplotlib as mpl import matplotlib.pyplot as plt mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' /build/reproducible-path/lmfit-py-1.2.2/doc/fitting.rst:628: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import matplotlib.pyplot as plt import numpy as np import lmfit x = np.linspace(1, 10, 250) np.random.seed(0) y = 3.0 * np.exp(-x / 2) - 5.0 * np.exp(-(x - 0.1) / 10.) + 0.1 * np.random.randn(x.size) /build/reproducible-path/lmfit-py-1.2.2/doc/fitting.rst:641: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: p = lmfit.Parameters() p.add_many(('a1', 4.), ('a2', 4.), ('t1', 3.), ('t2', 3., True)) def residual(p): v = p.valuesdict() return v['a1'] * np.exp(-x / v['t1']) + v['a2'] * np.exp(-(x - 0.1) / v['t2']) - y /build/reproducible-path/lmfit-py-1.2.2/doc/fitting.rst:655: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mi = lmfit.minimize(residual, p, method='nelder', nan_policy='omit') lmfit.printfuncs.report_fit(mi.params, min_correl=0.5) /build/reproducible-path/lmfit-py-1.2.2/doc/fitting.rst:662: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: plt.plot(x, y, 'o') plt.plot(x, residual(mi.params) + y, label='best fit') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.2.2/doc/fitting.rst:689: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mi.params.add('__lnsigma', value=np.log(0.1), min=np.log(0.001), max=np.log(2)) /build/reproducible-path/lmfit-py-1.2.2/doc/fitting.rst:696: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: res = lmfit.minimize(residual, method='emcee', nan_policy='omit', burn=300, steps=1000, thin=20, params=mi.params, is_weighted=False, progress=False) /build/reproducible-path/lmfit-py-1.2.2/doc/fitting.rst:715: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: plt.plot(res.acceptance_fraction, 'o') plt.xlabel('walker') plt.ylabel('acceptance fraction') plt.show() /build/reproducible-path/lmfit-py-1.2.2/doc/fitting.rst:725: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import corner emcee_plot = corner.corner(res.flatchain, labels=res.var_names, truths=list(res.params.valuesdict().values())) /build/reproducible-path/lmfit-py-1.2.2/doc/fitting.rst:737: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('median of posterior probability distribution') print('--------------------------------------------') lmfit.report_fit(res.params) /build/reproducible-path/lmfit-py-1.2.2/doc/fitting.rst:758: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: highest_prob = np.argmax(res.lnprob) hp_loc = np.unravel_index(highest_prob, res.lnprob.shape) mle_soln = res.chain[hp_loc] for i, par in enumerate(p): p[par].value = mle_soln[i] print('\nMaximum Likelihood Estimation from emcee ') print('-------------------------------------------------') print('Parameter MLE Value Median Value Uncertainty') fmt = ' {:5s} {:11.5f} {:11.5f} {:11.5f}'.format for name, param in p.items(): print(fmt(name, param.value, res.params[name].value, res.params[name].stderr)) /build/reproducible-path/lmfit-py-1.2.2/doc/fitting.rst:782: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('\nError estimates from emcee:') print('------------------------------------------------------') print('Parameter -2sigma -1sigma median +1sigma +2sigma') for name in p.keys(): quantiles = np.percentile(res.flatchain[name], [2.275, 15.865, 50, 84.135, 97.275]) median = quantiles[2] err_m2 = quantiles[0] - median err_m1 = quantiles[1] - median err_p1 = quantiles[3] - median err_p2 = quantiles[4] - median fmt = ' {:5s} {:8.4f} {:8.4f} {:8.4f} {:8.4f} {:8.4f}'.format print(fmt(name, err_m2, err_m1, median, err_p1, err_p2)) /build/reproducible-path/lmfit-py-1.2.2/doc/intro.rst:43: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, sin def residual(variables, x, data, uncertainty): """Model a decaying sine wave and subtract data.""" amp = variables[0] phaseshift = variables[1] freq = variables[2] decay = variables[3] model = amp * sin(x*freq + phaseshift) * exp(-x*x*decay) return (data-model) / uncertainty /build/reproducible-path/lmfit-py-1.2.2/doc/intro.rst:60: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import linspace, random from scipy.optimize import leastsq # generate synthetic data with noise x = linspace(0, 100) noise = random.normal(size=x.size, scale=0.2) data = 7.5 * sin(x*0.22 + 2.5) * exp(-x*x*0.01) + noise # generate experimental uncertainties uncertainty = abs(0.16 + random.normal(size=x.size, scale=0.05)) variables = [10.0, 0.2, 3.0, 0.007] out = leastsq(residual, variables, args=(x, data, uncertainty)) /build/reproducible-path/lmfit-py-1.2.2/doc/intro.rst:123: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, sin from lmfit import minimize, Parameters def residual(params, x, data, uncertainty): amp = params['amp'] phaseshift = params['phase'] freq = params['frequency'] decay = params['decay'] model = amp * sin(x*freq + phaseshift) * exp(-x*x*decay) return (data-model) / uncertainty params = Parameters() params.add('amp', value=10) params.add('decay', value=0.007) params.add('phase', value=0.2) params.add('frequency', value=3.0) out = minimize(residual, params, args=(x, data, uncertainty)) /build/reproducible-path/lmfit-py-1.2.2/doc/intro.rst:158: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import create_params params = create_params(amp=10, decay=0.007, phase=0.2, frequency=3.0) /build/reproducible-path/lmfit-py-1.2.2/doc/intro.rst:176: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params = Parameters() params.add('amp', value=10, vary=False) params.add('decay', value=0.007, min=0.0) params.add('phase', value=0.2) params.add('frequency', value=3.0, max=10) /build/reproducible-path/lmfit-py-1.2.2/doc/intro.rst:192: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params = create_params(amp={'value': 10, 'vary': False}, decay={'value': 0.007, 'min': 0}, phase=0.2, frequency={'value': 3.0, 'max':10}) /build/reproducible-path/lmfit-py-1.2.2/doc/intro.rst:201: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params['amp'].vary = False params['decay'].min = 0.10 /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:49: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: import matplotlib as mpl mpl.rcParams['figure.dpi'] = 150 %matplotlib inline %config InlineBackend.figure_format = 'svg' /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:57: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from numpy import exp, linspace, random def gaussian(x, amp, cen, wid): return amp * exp(-(x-cen)**2 / wid) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:68: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: from scipy.optimize import curve_fit x = linspace(-10, 10, 101) y = gaussian(x, 2.33, 0.21, 1.51) + random.normal(0, 0.2, x.size) init_vals = [1, 0, 1] # for [amp, cen, wid] best_vals, covar = curve_fit(gaussian, x, y, p0=init_vals) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:90: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import Model gmodel = Model(gaussian) print(f'parameter names: {gmodel.param_names}') print(f'independent variables: {gmodel.independent_vars}') /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:119: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params = gmodel.make_params() /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:129: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: params = gmodel.make_params(cen=0.3, amp=3, wid=1.25) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:143: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: x_eval = linspace(0, 10, 201) y_eval = gmodel.eval(params, x=x_eval) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:150: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: y_eval = gmodel.eval(x=x_eval, cen=6.5, amp=100, wid=2.0) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:159: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: result = gmodel.fit(y, params, x=x) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:165: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: result = gmodel.fit(y, x=x, cen=0.5, amp=10, wid=2.0) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:172: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_gaussian.py :hide-output: /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:179: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(result.fit_report()) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:189: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, 'o') plt.plot(x, result.init_fit, '--', label='initial fit') plt.plot(x, result.best_fit, '-', label='best fit') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:203: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: gmodel = Model(gaussian) result = gmodel.fit(y, params, x=x, amp=5, cen=5, wid=1) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:327: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np from lmfit import Model def decay(t, tau, N): return N*np.exp(-t/tau) decay_model = Model(decay) print(f'independent variables: {decay_model.independent_vars}') params = decay_model.make_params() print('\nParameters:') for pname, par in params.items(): print(pname, par) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:352: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: decay_model = Model(decay, independent_vars=['tau']) print(f'independent variables: {decay_model.independent_vars}') params = decay_model.make_params() print('\nParameters:') for pname, par in params.items(): print(pname, par) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:384: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def decay2(t, tau, N=10, check_positive=False): if check_positive: arg = abs(t)/max(1.e-9, abs(tau)) else: arg = t/tau return N*np.exp(arg) mod = Model(decay2) params = mod.make_params() print('Parameters:') for pname, par in params.items(): print(pname, par) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:421: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def myfunc(x, amplitude=1, center=0, sigma=1): # function definition, for now just ``pass`` pass mod = Model(myfunc, prefix='f1_') params = mod.make_params() print('Parameters:') for pname, par in params.items(): print(pname, par) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:468: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def myfunc(x, a=1, b=0): return a*x + 10*a - b /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:475: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def myfunc(x, a, b): return a*x + 10*a - b /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:494: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(myfunc) # simply supply initial values pars = mod.make_params(a=3, b=0.5) # supply initial values, attributes for bounds, etcetera: pars_bounded = mod.make_params(a=dict(value=3, min=0), b=dict(value=0.5, vary=False)) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:514: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: from lmfit import create_params mod = Model(myfunc) # simply supply initial values pars = create_params(a=3, b=0.5) # supply initial values and attributes for bounds, etc: pars_bounded = create_params(a=dict(value=3, min=0), b=dict(value=0.5, vary=False)) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:538: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: x = linspace(0, 10, 100) y_eval = mod.eval(x=x, a=7.0, b=-2.0) y_sim = y_eval + random.normal(0, 0.2, x.size) out = mod.fit(y_sim, pars, x=x, a=3.0, b=0.0) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:568: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(myfunc) mod.set_param_hint('bounded_parameter', min=0, max=1.0) pars = mod.make_params() /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:580: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: print('Parameter hints:') for pname, par in mod.param_hints.items(): print(pname, par) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:595: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(gaussian) mod.set_param_hint('wid', min=0) mod.set_param_hint('fwhm', expr='2.3548*wid') params = mod.make_params(amp={'value': 10, 'min':0.1, 'max':2000}, cen=5.5, wid=1.25) params.pretty_print() /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:714: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_savemodel.py /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:718: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_loadmodel.py :hide-output: /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:1013: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_gaussian.py :hide-output: :hide-code: /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:1017: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: dely = result.eval_uncertainty(sigma=3) plt.fill_between(x, result.best_fit-dely, result.best_fit+dely, color="#ABABAB", label='3-$\sigma$ uncertainty band') /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:1028: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: plt.plot(x, y, 'o') plt.plot(x, result.init_fit, '--', label='initial fit') plt.plot(x, result.best_fit, '-', label='best fit') plt.fill_between(x, result.best_fit-dely, result.best_fit+dely, color="#ABABAB", label='3-$\sigma$ uncertainty band') plt.legend() plt.show() /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:1052: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_uncertainty2.py /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:1096: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_uvars_params.py /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:1128: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_savemodelresult.py :hide-output: /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:1133: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_loadmodelresult.py :hide-output: /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:1154: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def gaussian_plus_line(x, amp, cen, wid, slope, intercept): """line + 1-d gaussian""" gauss = (amp / (sqrt(2*pi) * wid)) * exp(-(x-cen)**2 / (2*wid**2)) line = slope*x + intercept return gauss + line /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:1165: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(gaussian_plus_line) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:1177: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def line(x, slope, intercept): """a line""" return slope*x + intercept /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:1185: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(gaussian) + Model(line) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:1191: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_two_components.py :hide-output: /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:1196: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(result.fit_report()) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:1203: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y, 'o') axes[0].plot(x, result.init_fit, '--', label='initial fit') axes[0].plot(x, result.best_fit, '-', label='best fit') axes[0].legend() comps = result.eval_components() axes[1].plot(x, y, 'o') axes[1].plot(x, comps['gaussian'], '--', label='Gaussian component') axes[1].plot(x, comps['line'], '--', label='Line component') axes[1].legend() plt.show() /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:1225: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-output: comps = result.eval_components() plt.plot(x, y, 'o') plt.plot(x, comps['gaussian'], '--', label='Gaussian component') plt.plot(x, comps['line'], '--', label='Line component') /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:1247: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: xwide = linspace(-5, 25, 3001) predicted = mod.eval(result.params, x=xwide) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:1264: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: def fcn1(x, a): pass def fcn2(x, b): pass def fcn3(x, c): pass /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:1276: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: mod = Model(fcn1) + Model(fcn2) * Model(fcn3) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:1290: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: import numpy as np def convolve(dat, kernel): """simple convolution of two arrays""" npts = min(len(dat), len(kernel)) pad = np.ones(npts) tmp = np.concatenate((pad*dat[0], dat, pad*dat[-1])) out = np.convolve(tmp, kernel, mode='valid') noff = int((len(out) - npts) / 2) return (out[noff:])[:npts] /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:1308: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_model_composite.py :hide-output: /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:1313: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: print(result.fit_report()) /build/reproducible-path/lmfit-py-1.2.2/doc/model.rst:1320: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: :hide-code: fig, axes = plt.subplots(1, 2, figsize=(12.8, 4.8)) axes[0].plot(x, y, 'o') axes[0].plot(x, result.init_fit, '--', label='initial fit') axes[0].plot(x, result.best_fit, '-', label='best fit') axes[0].legend() axes[1].plot(x, y, 'o') axes[1].plot(x, 10*comps['jump'], '--', label='Jump component') axes[1].plot(x, 10*comps['gaussian'], '-', label='Gaussian component') axes[1].legend() plt.show() /build/reproducible-path/lmfit-py-1.2.2/doc/parameters.rst:117: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: ../examples/doc_parameters_basic.py :hide-output: /build/reproducible-path/lmfit-py-1.2.2/doc/parameters.rst:125: ERROR: Unknown directive type "jupyter-execute". .. jupyter-execute:: def fcn2min(params, x, data): """Model a decaying sine wave and subtract data.""" v = params.valuesdict() model = v['amp'] * np.sin(x*v['omega'] + v['shift']) * np.exp(-x*x*v['decay']) return model - data looking for now-outdated files... none found pickling environment... done checking 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The HTML pages are in .pybuild/html. rm doc/extensions.py mv examples/nodoc_example_emcee_Model_interface.py examples/example_emcee_Model_interface.py dh_installdocs -i install -m0755 -d debian/python3-lmfit/usr/share/doc/python3-lmfit install -p -m0644 debian/copyright debian/python3-lmfit/usr/share/doc/python3-lmfit/copyright install -m0755 -d debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc install -p -m0644 debian/copyright debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc/copyright install -m0755 -d debian/python-lmfit-doc/usr/share/doc-base/ install -p -m0644 debian/python-lmfit-doc.doc-base debian/python-lmfit-doc/usr/share/doc-base/python-lmfit-doc.python-lmfit-doc dh_installdocs .pybuild/html -p python-lmfit-doc --doc-main-package=python3-lmfit install -m0755 -d debian/python-lmfit-doc/usr/share/doc/python3-lmfit cd '.pybuild/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/reproducible-path/lmfit-py-1.2.2/debian/python-lmfit-doc/usr/share/doc/python3-lmfit chmod -R u\+rw,go=rX debian/python-lmfit-doc/usr/share/doc install -p -m0644 debian/copyright debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc/copyright install -m0755 -d debian/python-lmfit-doc/usr/share/doc-base/ install -p -m0644 debian/python-lmfit-doc.doc-base debian/python-lmfit-doc/usr/share/doc-base/python-lmfit-doc.python-lmfit-doc make[1]: Leaving directory '/build/reproducible-path/lmfit-py-1.2.2' dh_sphinxdoc -O--buildsystem=pybuild ln -sf ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/language_data.js ln -sf ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/sphinx_highlight.js ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/searchtools.js ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/doctools.js rm -rf debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/.doctrees rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/.buildinfo mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc install -p -m0644 debian/.debhelper/generated/python-lmfit-doc/dh_installchangelogs.dch.trimmed debian/python-lmfit-doc/usr/share/doc/python-lmfit-doc/changelog.Debian install -m0755 -d debian/python3-lmfit/usr/share/doc/python3-lmfit install -p -m0644 debian/.debhelper/generated/python3-lmfit/dh_installchangelogs.dch.trimmed debian/python3-lmfit/usr/share/doc/python3-lmfit/changelog.Debian rm -f debian/python-lmfit-doc.debhelper.log debian/python3-lmfit.debhelper.log debian/rules execute_before_dh_python3 make[1]: Entering directory '/build/reproducible-path/lmfit-py-1.2.2' rm -rf debian/python3-lmfit/usr/lib/python3*/dist-packages/htmlcov debian/python3-lmfit/usr/lib/python3*/dist-packages/.coverage make[1]: Leaving directory '/build/reproducible-path/lmfit-py-1.2.2' dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 6.20240422 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:182: supported Python versions: 3.11,3.12 (default=3.11) D: dh_python3 debhelper:166: skipping package python-lmfit-doc (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:174: source=lmfit-py, binary packages=['python3-lmfit'] D: dh_python3 dh_python3:204: processing package python3-lmfit... D: dh_python3 fs:50: moving files from debian/python3-lmfit/usr/lib/python3.11/dist-packages to debian/python3-lmfit/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/python3-lmfit/usr/lib/python3.12/dist-packages to debian/python3-lmfit/usr/lib/python3/dist-packages/ D: dh_python3 fs:176: Writing INSTALLER in debian/python3-lmfit/usr/lib/python3/dist-packages/lmfit-1.2.2.dist-info D: dh_python3 fs:187: Deleting RECORD in debian/python3-lmfit/usr/lib/python3/dist-packages/lmfit-1.2.2.dist-info D: dh_python3 fs:335: package python3-lmfit details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': {'debian/python3-lmfit/usr/lib/python3/dist-packages/lmfit-1.2.2.dist-info/METADATA'}, 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-lmfit D: dh_python3 pydist:173: trying to find dependency for asteval >=0.9.28 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:263: dependency: included in build-deps with limits D: dh_python3 pydist:173: trying to find dependency for numpy >=1.19 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:263: dependency: included in build-deps with limits D: dh_python3 pydist:173: trying to find dependency for scipy >=1.6 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:263: dependency: included in build-deps with limits D: dh_python3 pydist:173: trying to find dependency for uncertainties >=3.1.4 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:263: dependency: included in build-deps with limits D: dh_python3 pydist:173: trying to find dependency for pycairo ; (platform_system == "Windows") and extra == 'all' (python=None) I: dh_python3 pydist:325: Ignoring complex environment marker: pycairo ; (platform_system == "Windows") and extra == 'all' D: dh_python3 pydist:173: trying to find dependency for pycairo ; (platform_system == "Windows") and extra == 'doc' (python=None) I: dh_python3 pydist:325: Ignoring complex environment marker: pycairo ; (platform_system == "Windows") and extra == 'doc' D: dh_python3 depends:253: D={'python3-uncertainties (>= 3.1.7-1.1~)', 'python3:any', 'python3-asteval (>= 0.9.28~)', 'python3-numpy (>= 1.19~)', 'python3-scipy (>= 1.6~)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/sphinx_highlight.js ln -s ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/sphinx_highlight.js rm -f debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/doctools.js ln 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debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_multi_datasets_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_reduce_fcn_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_bounds_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_reduce_fcn_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_004_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_multi_datasets_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_002_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_004.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_derivfunc_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_use_pandas_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_bounds_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_use_pandas_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_002_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_expression_model_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_003.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_002_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_complex_resonator_model_003_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_algebraic_constraint_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_two_dimensional_peak_004_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_inequality_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_brute_002_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_001_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_fit_with_inequality_thumb.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_003_3_0x.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_003.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_detect_outliers_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_confidence_interval_001.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_images/sphx_glr_example_sympy_002.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/bc82bea3a5dd7bdba60b65220891d9e5/examples_python.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_downloads/fb625db3c50d423b1b7881136ffdeec8/examples_jupyter.zip using File::StripNondeterminism::handlers::zip Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/lmfitheader.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/broken_example.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/listitem.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/footerbg.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/no_image.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/relbg.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/headerbg.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/minus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/plus.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/file.png using File::StripNondeterminism::handlers::png Normalizing debian/python-lmfit-doc/usr/share/doc/python3-lmfit/html/_static/bodybg.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild cd debian/python3-lmfit cd debian/python-lmfit-doc chmod a-x usr/share/doc/python3-lmfit/changelog.Debian gzip -9nf usr/share/doc/python3-lmfit/changelog.Debian chmod a-x usr/share/doc/python-lmfit-doc/changelog.Debian usr/share/doc/python3-lmfit/html/_downloads/2c0316848a8a5e58fdf5c1bd1978018e/example_confidence_interval.ipynb usr/share/doc/python3-lmfit/html/_downloads/3805fc8171e8a0686d5cf65be55085ee/example_complex_resonator_model.py usr/share/doc/python3-lmfit/html/_downloads/3dcc7459227dbd4ba1982949be8491e1/example_complex_resonator_model.ipynb usr/share/doc/python3-lmfit/html/_downloads/6069607ae016c4f4f055d1c8dfd4bfa7/example_sympy.ipynb usr/share/doc/python3-lmfit/html/_downloads/87be2ee5d3294a608face2290f955fe3/example_two_dimensional_peak.py usr/share/doc/python3-lmfit/html/_downloads/8b2fe0a32f4790de5b0465c00682a37b/example_Model_interface.py usr/share/doc/python3-lmfit/html/_downloads/9074bca346e91d4783f1ebfda08595dd/lmfit_emcee_model_selection.ipynb usr/share/doc/python3-lmfit/html/_downloads/9254f2af7eef00978dc5823dc5418985/example_brute.ipynb usr/share/doc/python3-lmfit/html/_downloads/9f726e78b6ffce5b68fd1a615f5db248/nodoc_example_emcee_Model_interface.py usr/share/doc/python3-lmfit/html/_downloads/a48b6f5c2c4202cb67d15a117c5eb6bc/example_fit_with_derivfunc.ipynb usr/share/doc/python3-lmfit/html/_downloads/a4a9bd70fc277eac0b5a505f48c84a99/example_detect_outliers.ipynb usr/share/doc/python3-lmfit/html/_downloads/a69966d88009a9341e88bfe1935158a7/example_Model_interface.ipynb usr/share/doc/python3-lmfit/html/_downloads/b6a243851aa5b1d7362705005c5ed3b1/example_confidence_interval.py usr/share/doc/python3-lmfit/html/_downloads/c004866ac6395edd2609ff96cecdc255/example_brute.py usr/share/doc/python3-lmfit/html/_downloads/c5b1d1ce60f76e20b3312a2697eca7f1/lmfit_emcee_model_selection.py usr/share/doc/python3-lmfit/html/_downloads/e9797dfaa256c029a43c2a364328ed36/example_fit_multi_datasets.ipynb usr/share/doc/python3-lmfit/html/_downloads/ee6bdfefbd3fee18a7b2cb99c291f27e/example_two_dimensional_peak.ipynb usr/share/doc/python3-lmfit/html/_downloads/f64821164b7aa0a9e3cc648c50420867/nodoc_example_emcee_Model_interface.ipynb gzip -9nf usr/share/doc/python-lmfit-doc/changelog.Debian usr/share/doc/python3-lmfit/html/_downloads/2c0316848a8a5e58fdf5c1bd1978018e/example_confidence_interval.ipynb usr/share/doc/python3-lmfit/html/_downloads/3805fc8171e8a0686d5cf65be55085ee/example_complex_resonator_model.py usr/share/doc/python3-lmfit/html/_downloads/3dcc7459227dbd4ba1982949be8491e1/example_complex_resonator_model.ipynb usr/share/doc/python3-lmfit/html/_downloads/6069607ae016c4f4f055d1c8dfd4bfa7/example_sympy.ipynb usr/share/doc/python3-lmfit/html/_downloads/87be2ee5d3294a608face2290f955fe3/example_two_dimensional_peak.py usr/share/doc/python3-lmfit/html/_downloads/8b2fe0a32f4790de5b0465c00682a37b/example_Model_interface.py usr/share/doc/python3-lmfit/html/_downloads/9074bca346e91d4783f1ebfda08595dd/lmfit_emcee_model_selection.ipynb usr/share/doc/python3-lmfit/html/_downloads/9254f2af7eef00978dc5823dc5418985/example_brute.ipynb usr/share/doc/python3-lmfit/html/_downloads/9f726e78b6ffce5b68fd1a615f5db248/nodoc_example_emcee_Model_interface.py usr/share/doc/python3-lmfit/html/_downloads/a48b6f5c2c4202cb67d15a117c5eb6bc/example_fit_with_derivfunc.ipynb usr/share/doc/python3-lmfit/html/_downloads/a4a9bd70fc277eac0b5a505f48c84a99/example_detect_outliers.ipynb usr/share/doc/python3-lmfit/html/_downloads/a69966d88009a9341e88bfe1935158a7/example_Model_interface.ipynb usr/share/doc/python3-lmfit/html/_downloads/b6a243851aa5b1d7362705005c5ed3b1/example_confidence_interval.py usr/share/doc/python3-lmfit/html/_downloads/c004866ac6395edd2609ff96cecdc255/example_brute.py usr/share/doc/python3-lmfit/html/_downloads/c5b1d1ce60f76e20b3312a2697eca7f1/lmfit_emcee_model_selection.py usr/share/doc/python3-lmfit/html/_downloads/e9797dfaa256c029a43c2a364328ed36/example_fit_multi_datasets.ipynb usr/share/doc/python3-lmfit/html/_downloads/ee6bdfefbd3fee18a7b2cb99c291f27e/example_two_dimensional_peak.ipynb usr/share/doc/python3-lmfit/html/_downloads/f64821164b7aa0a9e3cc648c50420867/nodoc_example_emcee_Model_interface.ipynb cd '/build/reproducible-path/lmfit-py-1.2.2' cd '/build/reproducible-path/lmfit-py-1.2.2' dh_fixperms -O--buildsystem=pybuild find debian/python3-lmfit ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python-lmfit-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-lmfit/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-lmfit/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python-lmfit-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/python-lmfit-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-lmfit/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python-lmfit-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python-lmfit-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-lmfit -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-lmfit/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-lmfit/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-lmfit/DEBIAN/postinst cat debian/python3-lmfit.postinst.debhelper >> debian/python3-lmfit/DEBIAN/postinst chmod 0755 -- debian/python3-lmfit/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-lmfit/DEBIAN/prerm cat debian/python3-lmfit.prerm.debhelper >> debian/python3-lmfit/DEBIAN/prerm chmod 0755 -- debian/python3-lmfit/DEBIAN/prerm install -m0755 -d debian/python-lmfit-doc/DEBIAN dh_numpy3 -O--buildsystem=pybuild mv debian/python3-lmfit.substvars.new debian/python3-lmfit.substvars mv debian/python-lmfit-doc.substvars.new debian/python-lmfit-doc.substvars dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python3-lmfit/DEBIAN echo misc:Depends= >> debian/python3-lmfit.substvars echo misc:Pre-Depends= >> debian/python3-lmfit.substvars dpkg-gencontrol -ppython3-lmfit -ldebian/changelog -Tdebian/python3-lmfit.substvars -cdebian/control -Pdebian/python3-lmfit install -m0755 -d debian/python-lmfit-doc/DEBIAN echo misc:Depends= >> debian/python-lmfit-doc.substvars echo misc:Pre-Depends= >> debian/python-lmfit-doc.substvars dpkg-gencontrol -ppython-lmfit-doc -ldebian/changelog -Tdebian/python-lmfit-doc.substvars -cdebian/control -Pdebian/python-lmfit-doc chmod 0644 -- debian/python3-lmfit/DEBIAN/control dpkg-gencontrol: warning: package python-lmfit-doc: substitution variable ${python3:Depends} unused, but is defined chmod 0644 -- debian/python-lmfit-doc/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python-lmfit-doc/DEBIAN install -m0755 -d debian/python3-lmfit/DEBIAN cd debian/python-lmfit-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/python3-lmfit >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-lmfit/DEBIAN/md5sums chmod 0644 -- debian/python-lmfit-doc/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-lmfit .. dpkg-deb --root-owner-group --build debian/python-lmfit-doc .. dpkg-deb: building package 'python3-lmfit' in '../python3-lmfit_1.2.2-3_all.deb'. dpkg-deb: building package 'python-lmfit-doc' in '../python-lmfit-doc_1.2.2-3_all.deb'. dpkg-genbuildinfo --build=binary -O../lmfit-py_1.2.2-3_i386.buildinfo dpkg-genchanges --build=binary -O../lmfit-py_1.2.2-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/875 and its subdirectories I: Current time: Sat Jun 21 12:12:28 -12 2025 I: pbuilder-time-stamp: 1750551148 Sun May 19 17:49:32 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom07-i386.debian.net. Sun May 19 17:49:32 UTC 2024 I: Preparing to do remote build '2' on infom07-i386.debian.net. Sun May 19 17:59:17 UTC 2024 I: Deleting $TMPDIR on infom07-i386.debian.net. Sun May 19 17:59:18 UTC 2024 I: lmfit-py_1.2.2-3_i386.changes: Format: 1.8 Date: Thu, 15 Feb 2024 21:12:51 +0100 Source: lmfit-py Binary: python-lmfit-doc python3-lmfit Architecture: all Version: 1.2.2-3 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Andreas Tille Description: python-lmfit-doc - Least-Squares Minimization with Constraints (Documentation) python3-lmfit - Least-Squares Minimization with Constraints (Python 3) Closes: 1047368 1056419 1057574 1058311 Changes: lmfit-py (1.2.2-3) unstable; urgency=medium . * Team upload. * Versioned (Build-)Depends: python3-uncertainties (>= 3.1.7-1.1~) Closes: #1056419, #1058311, #1057574 * Skip a test on 32-bit archs * Fix clean target Closes: #1047368 Checksums-Sha1: 19ca1eba8da5197a72990e6fd8c767e1e2c5cb22 11689 lmfit-py_1.2.2-3_i386.buildinfo 0d65653c5c2dc5fc0d4f6a06486122772a635e2b 5454720 python-lmfit-doc_1.2.2-3_all.deb 46107a572d4e0a6cf4ec913e8e833b22bcff2b22 80168 python3-lmfit_1.2.2-3_all.deb Checksums-Sha256: a46b393687eaac4c4d6b90c8cd0f8713b884b444c83694d060ca3f5fbfdda74b 11689 lmfit-py_1.2.2-3_i386.buildinfo d6fe9c4726693369a41f4a77004d1d1d616cdd0c17335c8bafe5ee2ff35706c8 5454720 python-lmfit-doc_1.2.2-3_all.deb 2e6a527caa85b1c0a161413ab50e3c236c8ee4a98f4dcd017cc3d0e53344e64a 80168 python3-lmfit_1.2.2-3_all.deb Files: c37eac1e742eb746148126527a63d558 11689 science optional lmfit-py_1.2.2-3_i386.buildinfo 4615b1124abde0e7b6372f5fad00d3d8 5454720 doc optional python-lmfit-doc_1.2.2-3_all.deb 7693d1f56ed82af28ad12bd7e807abcd 80168 python optional python3-lmfit_1.2.2-3_all.deb Sun May 19 17:59:19 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_16-21436.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.EkgTARCL/lmfit-py_1.2.2-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.EkgTARCL/lmfit-py_1.2.2-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.EkgTARCL/lmfit-py_1.2.2-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.EkgTARCL/b1/lmfit-py_1.2.2-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.EkgTARCL/b2/lmfit-py_1.2.2-3_i386.changes ## close_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 2.865s) 1.180s 59 calls diff 1.145s 26 calls xz 0.260s 11 calls js-beautify 0.237s 187 calls html2text 0.019s 3 calls cmp 0.019s 3 calls cmp (external) 0.004s 46 calls cmp (internal) ## compare_files (cumulative) (total time: 31.102s) 6.931s 1 call abc.DotChangesFile 6.890s 1 call abc.DebFile 6.814s 2 calls abc.XzFile 5.569s 1 call abc.DebDataTarFile 3.425s 1 call abc.JavaScriptFile 0.940s 17 calls abc.HtmlFile 0.468s 17 calls abc.TextFile 0.051s 1 call abc.TarFile 0.014s 1 call abc.Md5sumsFile ## container_extract (total time: 1.317s) 1.142s 6 calls diffoscope.comparators.xz.XzContainer 0.140s 418 calls diffoscope.comparators.deb.DebTarContainer 0.031s 8 calls diffoscope.comparators.deb.DebContainer 0.004s 6 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 1.962s) 1.962s 122 calls linediff ## has_same_content_as (total time: 0.028s) 0.015s 1 call abc.DebDataTarFile 0.005s 17 calls abc.HtmlFile 0.003s 19 calls abc.TextFile 0.003s 2 calls abc.DebFile 0.001s 4 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 2 calls abc.Md5sumsFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call abc.TarFile 0.000s 2 calls abc.XzFile 0.000s 1 call abc.JavaScriptFile ## main (total time: 10.702s) 10.701s 2 calls outputs 0.001s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 3.294s) 3.288s 1 call html 0.003s 1 call text 0.003s 1 call json ## recognizes (total time: 0.456s) 0.321s 2130 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.079s 12 calls diffoscope.comparators.binary.FilesystemFile 0.030s 260 calls diffoscope.comparators.utils.archive.ArchiveMember 0.026s 108 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.388s) 0.388s 50 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 11.150s CPU time consumed: 11.676s Sun May 19 17:59:31 UTC 2024 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Sun May 19 17:59:31 UTC 2024 E: lmfit-py failed to build reproducibly in trixie on i386. Sun May 19 17:59:33 UTC 2024 I: Submitting .buildinfo files to external archives: Sun May 19 17:59:33 UTC 2024 I: Submitting 16K b1/lmfit-py_1.2.2-3_i386.buildinfo.asc Sun May 19 17:59:34 UTC 2024 I: Submitting 16K b2/lmfit-py_1.2.2-3_i386.buildinfo.asc Sun May 19 17:59:35 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun May 19 17:59:35 UTC 2024 I: Done submitting .buildinfo files. Sun May 19 17:59:35 UTC 2024 I: Removing signed lmfit-py_1.2.2-3_i386.buildinfo.asc files: removed './b1/lmfit-py_1.2.2-3_i386.buildinfo.asc' removed './b2/lmfit-py_1.2.2-3_i386.buildinfo.asc'