Fri Oct 25 10:03:13 UTC 2024 I: starting to build libslow5lib/trixie/i386 on jenkins on '2024-10-25 10:02' Fri Oct 25 10:03:13 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_12/26449/console.log Fri Oct 25 10:03:13 UTC 2024 I: Downloading source for trixie/libslow5lib=0.7.0+dfsg-3 --2024-10-25 10:03:13-- http://deb.debian.org/debian/pool/main/libs/libslow5lib/libslow5lib_0.7.0%2bdfsg-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2584 (2.5K) [text/prs.lines.tag] Saving to: ‘libslow5lib_0.7.0+dfsg-3.dsc’ 0K .. 100% 214M=0s 2024-10-25 10:03:13 (214 MB/s) - ‘libslow5lib_0.7.0+dfsg-3.dsc’ saved [2584/2584] Fri Oct 25 10:03:13 UTC 2024 I: libslow5lib_0.7.0+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libslow5lib Binary: libslow5-0t64, libslow5-dev, python3-slow5 Architecture: any Version: 0.7.0+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/hasindu2008/slow5lib Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/libslow5lib Vcs-Git: https://salsa.debian.org/med-team/libslow5lib.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, libstreamvbyte-dev, python3-all, zlib1g-dev Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), dh-python, python3-all-dev, libstreamvbyte-dev, libzstd-dev, zlib1g-dev, cython3, python3-setuptools, python3-numpy, python3-wheel Package-List: libslow5-0t64 deb libs optional arch=any libslow5-dev deb libdevel optional arch=any python3-slow5 deb python optional arch=any Checksums-Sha1: cbad8da474b7d88ed5f766eaa2d9db2c85e1f3a3 2014308 libslow5lib_0.7.0+dfsg.orig.tar.xz ce7ad4d4a6430f9976ec1112e0cd228449696a2b 8348 libslow5lib_0.7.0+dfsg-3.debian.tar.xz Checksums-Sha256: 8a60fc89a8a641bb49c6ad3c308371d7152c61756aa67c1946b3d87f49364d3d 2014308 libslow5lib_0.7.0+dfsg.orig.tar.xz 86f7e4fc9c2e8fce922fd3c70458ac1acb47ca36a0df439377dd5ce9da89497d 8348 libslow5lib_0.7.0+dfsg-3.debian.tar.xz Files: 9bfd15ff3ab3938925d84fea770a8848 2014308 libslow5lib_0.7.0+dfsg.orig.tar.xz a57a415a580274851179a1f061247bf0 8348 libslow5lib_0.7.0+dfsg-3.debian.tar.xz Dgit: 52759902858a10731b15859bf5ad7b370cc0670c debian archive/debian/0.7.0+dfsg-3 https://git.dgit.debian.org/libslow5lib -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmahZ5sUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrUyhAAt/Yp06I++HgNaCe330UleTyGCuER 4p5qpGCo8zYF29WUFiOon2LyJhthotla+ZK1vl6jhpAUjQCUvC+JsPtZFWspEhhi IN8R0qd+MMB+68E8SwBNPacmfvwkhyDIARrhj8g75q9gpGFCM7dU5muHIEtUZsaL EDjbgbT476b3dQBUcZE6pSExNfpFfBvxsIxX9Ucy8xG841bd99fSYagFo891TuLe Zf9PIDeN8MsuuyLTWjBqEpAxqcjbO3OAFX7E4k4F/OJVCAIPhkfcjnG6tL6Iqg0c 4lK/O7v+wGVgf/ljqTP/24CyW3RlBWgIIFdT9HKJjD095G2sAHLMxzYJKC1UUKTV 4IfBsW2em+MCoIs1jrjDm8Tz9njq9rm/RxhLdGsq4mURlvOkadTpFG6xPjkqmJCa jfEesj9P0moIaUklUdzeXN7Gc2oq0nfMgrDdYw1qBp8A8f3efLxjXpjRAry+S1Aw CKz8E9MSMXnpKoq9F1VE8h6/x4aAx1PBuju5k3hsrwEVkdxkgQVLeiHWHXCi6G3C wG8Sy3jkJNs2HAMrHptmFQrHYYN6Dztx5bxxDMNr2ShmDQQi1RwAuEJ+T6tlwa7F N1vFp2OF+jEo5saX0noC6+xQk3CB3BbHWJLscSS88OrB33A5ym3PHy1DHIL2606X dpB+a4Mq0QbPpoU= =Exg4 -----END PGP SIGNATURE----- Fri Oct 25 10:03:13 UTC 2024 I: Checking whether the package is not for us Fri Oct 25 10:03:13 UTC 2024 I: Starting 1st build on remote node ionos12-i386.debian.net. Fri Oct 25 10:03:13 UTC 2024 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Fri Oct 25 10:06:17 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 24 22:03:15 -12 2024 I: pbuilder-time-stamp: 1729850595 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [libslow5lib_0.7.0+dfsg-3.dsc] I: copying [./libslow5lib_0.7.0+dfsg.orig.tar.xz] I: copying [./libslow5lib_0.7.0+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Jul 24 20:44:11 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libslow5lib_0.7.0+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting libslow5lib in libslow5lib-0.7.0+dfsg dpkg-source: info: unpacking libslow5lib_0.7.0+dfsg.orig.tar.xz dpkg-source: info: unpacking libslow5lib_0.7.0+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_streamvbyte.patch dpkg-source: info: applying enable_shared_and_static.patch dpkg-source: info: applying fix-baseline.patch dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/51705/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='679fce772b3b47f7825ce0e4b112a93c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='51705' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gxwa0Ywi/pbuilderrc_o3RJ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gxwa0Ywi/b1 --logfile b1/build.log libslow5lib_0.7.0+dfsg-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/51705/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), dh-python, python3-all-dev, libstreamvbyte-dev, libzstd-dev, zlib1g-dev, cython3, python3-setuptools, python3-numpy, python3-wheel dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 21867 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.106~); however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on libstreamvbyte-dev; however: Package libstreamvbyte-dev is not installed. pbuilder-satisfydepends-dummy depends on libzstd-dev; however: Package libzstd-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-wheel; however: Package python3-wheel is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} cython3{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libstreamvbyte-dev{a} libstreamvbyte0{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 102 newly installed, 0 to remove and 0 not upgraded. Need to get 66.3 MB of archives. After unpacking 257 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.6-1 [813 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.3-1 [107 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.6-1 [2242 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.1-1 [23.1 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get: 12 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 libtirpc3t64 i386 1.3.4+ds-1.3 [90.2 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libnsl2 i386 1.3.0-3+b2 [42.4 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-5 [173 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.6-1 [1961 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.6-1 [669 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main i386 python3 i386 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libproc2-0 i386 2:4.0.4-6 [65.7 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 procps i386 2:4.0.4-6 [876 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3 [42.9 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-9 [102 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 cmake-data all 3.30.5-1 [2223 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5 [9550 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.1 [733 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libarchive13t64 i386 3.7.4-1 [390 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b4 [309 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3+b1 [200 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.63.0-1 [82.7 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libcurl4t64 i386 8.10.1-2 [391 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 libjsoncpp26 i386 1.9.6-2 [90.0 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 librhash1 i386 1.4.5-1 [144 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libuv1t64 i386 1.48.0-6 [157 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 cmake i386 3.30.5-1 [12.5 MB] Get: 57 http://deb.debian.org/debian trixie/main i386 cython3 i386 3.0.11+dfsg-1 [2429 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 d-shlibs all 0.107 [11.0 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 65 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-2 [194 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 77 http://deb.debian.org/debian trixie/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 python3-zipp all 3.20.2-1 [10.3 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 74.1.2-2 [736 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20240824 [109 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.0-3 [140 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 libexpat1-dev i386 2.6.3-1 [164 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14.2.0-6 [735 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 libjs-sphinxdoc all 7.4.7-3 [158 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.0-3 [2167 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 libpython3.12t64 i386 3.12.6-1 [2168 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1 [915 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 libpython3.12-dev i386 3.12.6-1 [5284 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 libpython3-dev i386 3.12.6-1 [9956 B] Get: 93 http://deb.debian.org/debian trixie/main i386 libpython3-all-dev i386 3.12.6-1 [1068 B] Get: 94 http://deb.debian.org/debian trixie/main i386 libstreamvbyte0 i386 0.4.1-4+b1 [6096 B] Get: 95 http://deb.debian.org/debian trixie/main i386 libstreamvbyte-dev i386 0.4.1-4+b1 [6864 B] Get: 96 http://deb.debian.org/debian trixie/main i386 libzstd-dev i386 1.5.6+dfsg-1 [352 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.12.6-1 [1040 B] Get: 98 http://deb.debian.org/debian trixie/main i386 python3.12-dev i386 3.12.6-1 [506 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 python3-dev i386 3.12.6-1 [26.1 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 python3-all-dev i386 3.12.6-1 [1068 B] Get: 101 http://deb.debian.org/debian trixie/main i386 python3-numpy i386 1:1.26.4+ds-11 [4299 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 python3-wheel all 0.44.0-2 [53.4 kB] Fetched 66.3 MB in 1s (45.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21867 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.6-1_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.6-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.3-1_i386.deb ... Unpacking libexpat1:i386 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.6-1_i386.deb ... Unpacking python3.12-minimal (3.12.6-1) ... Setting up libpython3.12-minimal:i386 (3.12.6-1) ... Setting up libexpat1:i386 (2.6.3-1) ... Setting up python3.12-minimal (3.12.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22187 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_i386.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../04-libkrb5support0_1.21.3-3_i386.deb ... Unpacking libkrb5support0:i386 (1.21.3-3) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../05-libcom-err2_1.47.1-1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../06-libk5crypto3_1.21.3-3_i386.deb ... Unpacking libk5crypto3:i386 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../07-libkeyutils1_1.6.3-3_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../08-libkrb5-3_1.21.3-3_i386.deb ... Unpacking libkrb5-3:i386 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:i386. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3 to /lib/i386-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3.0.0 to /lib/i386-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:i386 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:i386. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_i386.deb ... Unpacking libnsl2:i386 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../14-libreadline8t64_8.2-5_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:i386. Preparing to unpack .../15-libpython3.12-stdlib_3.12.6-1_i386.deb ... Unpacking libpython3.12-stdlib:i386 (3.12.6-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.6-1_i386.deb ... Unpacking python3.12 (3.12.6-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23259 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.6-1_i386.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package libproc2-0:i386. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-6_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-6_i386.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../08-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.40.2-9_i386.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../11-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. 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Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package libarchive13t64:i386. Preparing to unpack .../21-libarchive13t64_3.7.4-1_i386.deb ... Unpacking libarchive13t64:i386 (3.7.4-1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../22-libbrotli1_1.1.0-2+b4_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b4) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../23-libsasl2-modules-db_2.1.28+dfsg1-8_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../24-libsasl2-2_2.1.28+dfsg1-8_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../25-libldap-2.5-0_2.5.18+dfsg-3+b1_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../26-libnghttp2-14_1.63.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.63.0-1) ... Selecting previously unselected package libpsl5t64:i386. Preparing to unpack .../27-libpsl5t64_0.21.2-1.1_i386.deb ... Unpacking libpsl5t64:i386 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../28-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:i386. Preparing to unpack .../29-libssh2-1t64_1.11.1-1_i386.deb ... Unpacking libssh2-1t64:i386 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:i386. Preparing to unpack .../30-libcurl4t64_8.10.1-2_i386.deb ... Unpacking libcurl4t64:i386 (8.10.1-2) ... Selecting previously unselected package libjsoncpp26:i386. Preparing to unpack .../31-libjsoncpp26_1.9.6-2_i386.deb ... Unpacking libjsoncpp26:i386 (1.9.6-2) ... Selecting previously unselected package librhash1:i386. Preparing to unpack .../32-librhash1_1.4.5-1_i386.deb ... Unpacking librhash1:i386 (1.4.5-1) ... Selecting previously unselected package libuv1t64:i386. Preparing to unpack .../33-libuv1t64_1.48.0-6_i386.deb ... Unpacking libuv1t64:i386 (1.48.0-6) ... Selecting previously unselected package cmake. Preparing to unpack .../34-cmake_3.30.5-1_i386.deb ... Unpacking cmake (3.30.5-1) ... Selecting previously unselected package cython3. Preparing to unpack .../35-cython3_3.0.11+dfsg-1_i386.deb ... Unpacking cython3 (3.0.11+dfsg-1) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../36-d-shlibs_0.107_all.deb ... Unpacking d-shlibs (0.107) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../37-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../38-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../39-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../40-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../41-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../42-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../43-libelf1t64_0.191-2_i386.deb ... Unpacking libelf1t64:i386 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../44-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../45-gettext_0.22.5-2_i386.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../46-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../47-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../48-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../49-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../50-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../51-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../52-python3-typeguard_4.3.0-1_all.deb ... Unpacking python3-typeguard (4.3.0-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../53-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../54-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../55-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../56-python3-pkg-resources_74.1.2-2_all.deb ... Unpacking python3-pkg-resources (74.1.2-2) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../57-python3-zipp_3.20.2-1_all.deb ... Unpacking python3-zipp (3.20.2-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../58-python3-setuptools_74.1.2-2_all.deb ... Unpacking python3-setuptools (74.1.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../59-dh-python_6.20240824_all.deb ... Unpacking dh-python (6.20240824) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../60-libblas3_3.12.0-3_i386.deb ... Unpacking libblas3:i386 (3.12.0-3) ... Selecting previously unselected package libexpat1-dev:i386. Preparing to unpack .../61-libexpat1-dev_2.6.3-1_i386.deb ... Unpacking libexpat1-dev:i386 (2.6.3-1) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../62-libgfortran5_14.2.0-6_i386.deb ... Unpacking libgfortran5:i386 (14.2.0-6) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../63-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../64-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../65-libjs-sphinxdoc_7.4.7-3_all.deb ... Unpacking libjs-sphinxdoc (7.4.7-3) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../66-liblapack3_3.12.0-3_i386.deb ... Unpacking liblapack3:i386 (3.12.0-3) ... Selecting previously unselected package libpython3.12t64:i386. Preparing to unpack .../67-libpython3.12t64_3.12.6-1_i386.deb ... Unpacking libpython3.12t64:i386 (3.12.6-1) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../68-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1) ... Selecting previously unselected package libpython3.12-dev:i386. Preparing to unpack .../69-libpython3.12-dev_3.12.6-1_i386.deb ... Unpacking libpython3.12-dev:i386 (3.12.6-1) ... Selecting previously unselected package libpython3-dev:i386. Preparing to unpack .../70-libpython3-dev_3.12.6-1_i386.deb ... Unpacking libpython3-dev:i386 (3.12.6-1) ... Selecting previously unselected package libpython3-all-dev:i386. Preparing to unpack .../71-libpython3-all-dev_3.12.6-1_i386.deb ... Unpacking libpython3-all-dev:i386 (3.12.6-1) ... Selecting previously unselected package libstreamvbyte0:i386. Preparing to unpack .../72-libstreamvbyte0_0.4.1-4+b1_i386.deb ... Unpacking libstreamvbyte0:i386 (0.4.1-4+b1) ... Selecting previously unselected package libstreamvbyte-dev:i386. Preparing to unpack .../73-libstreamvbyte-dev_0.4.1-4+b1_i386.deb ... Unpacking libstreamvbyte-dev:i386 (0.4.1-4+b1) ... Selecting previously unselected package libzstd-dev:i386. Preparing to unpack .../74-libzstd-dev_1.5.6+dfsg-1_i386.deb ... Unpacking libzstd-dev:i386 (1.5.6+dfsg-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../75-python3-all_3.12.6-1_i386.deb ... Unpacking python3-all (3.12.6-1) ... Selecting previously unselected package python3.12-dev. Preparing to unpack .../76-python3.12-dev_3.12.6-1_i386.deb ... Unpacking python3.12-dev (3.12.6-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../77-python3-dev_3.12.6-1_i386.deb ... Unpacking python3-dev (3.12.6-1) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../78-python3-all-dev_3.12.6-1_i386.deb ... Unpacking python3-all-dev (3.12.6-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../79-python3-numpy_1%3a1.26.4+ds-11_i386.deb ... Unpacking python3-numpy (1:1.26.4+ds-11) ... Selecting previously unselected package python3-wheel. Preparing to unpack .../80-python3-wheel_0.44.0-2_all.deb ... Unpacking python3-wheel (0.44.0-2) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libstreamvbyte0:i386 (0.4.1-4+b1) ... Setting up libkeyutils1:i386 (1.6.3-3) ... Setting up libicu72:i386 (72.1-5) ... Setting up libzstd-dev:i386 (1.5.6+dfsg-1) ... Setting up bsdextrautils (2.40.2-9) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:i386 (1.1.0-2+b4) ... Setting up libuv1t64:i386 (1.48.0-6) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up libpsl5t64:i386 (0.21.2-1.1) ... Setting up libnghttp2-14:i386 (1.63.0-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:i386 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:i386 (0.191-2) ... Setting up libkrb5support0:i386 (1.21.3-3) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Oct 25 10:03:52 UTC 2024. Universal Time is now: Fri Oct 25 10:03:52 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libexpat1-dev:i386 (2.6.3-1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libjsoncpp26:i386 (1.9.6-2) ... Setting up libstreamvbyte-dev:i386 (0.4.1-4+b1) ... Setting up libproc2-0:i386 (2:4.0.4-6) ... Setting up autopoint (0.22.5-2) ... Setting up d-shlibs (0.107) ... Setting up libk5crypto3:i386 (1.21.3-3) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-8) ... Setting up libgfortran5:i386 (14.2.0-6) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-6) ... Setting up netbase (6.4) ... Setting up cmake-data (3.30.5-1) ... Setting up librhash1:i386 (1.4.5-1) ... Setting up libkrb5-3:i386 (1.21.3-3) ... Setting up libssh2-1t64:i386 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up libldap-2.5-0:i386 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-3) ... Setting up libreadline8t64:i386 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libarchive13t64:i386 (3.7.4-1) ... Setting up libcurl4t64:i386 (8.10.1-2) ... Setting up libtirpc3t64:i386 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:i386 (1.3.0-3+b2) ... Setting up cmake (3.30.5-1) ... Setting up libpython3.12-stdlib:i386 (3.12.6-1) ... Setting up python3.12 (3.12.6-1) ... Setting up debhelper (13.20) ... Setting up libpython3.12t64:i386 (3.12.6-1) ... Setting up libpython3-stdlib:i386 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up libpython3.12-dev:i386 (3.12.6-1) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-wheel (0.44.0-2) ... Setting up python3.12-dev (3.12.6-1) ... Setting up cython3 (3.0.11+dfsg-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up libpython3-dev:i386 (3.12.6-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up libpython3-all-dev:i386 (3.12.6-1) ... Setting up python3-dev (3.12.6-1) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-all-dev (3.12.6-1) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up dh-python (6.20240824) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libslow5lib-0.7.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libslow5lib_0.7.0+dfsg-3_source.changes dpkg-buildpackage: info: source package libslow5lib dpkg-buildpackage: info: source version 0.7.0+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with python3 --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --with python3 --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' dh_auto_configure -- \ -DSLOW5_USE_ZSTD="ON" cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DSLOW5_USE_ZSTD=ON .. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu dh_auto_configure --buildsystem=pybuild I: pybuild base:311: dh_auto_configure --buildsystem=cmake --builddirectory=/build/reproducible-path/libslow5lib-0.7.0+dfsg/.pybuild/cpython3_3.12_slow5/build -- -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.12 -DPYTHON_LIBRARY:FILEPATH=/usr/lib/python3.12/config-3.12-i386-linux-gnu/libpython3.12.so -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.12 -DPython_EXECUTABLE=/usr/bin/python3.12 -DPython_LIBRARY=/usr/lib/python3.12/config-3.12-i386-linux-gnu/libpython3.12.so -DPython_INCLUDE_DIR=/usr/include/python3.12 -DPython3_EXECUTABLE=/usr/bin/python3.12 -DPython3_LIBRARY=/usr/lib/python3.12/config-3.12-i386-linux-gnu/libpython3.12.so -DPython3_INCLUDE_DIR=/usr/include/python3.12 cd .pybuild/cpython3_3.12_slow5/build && PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.12 -DPYTHON_LIBRARY:FILEPATH=/usr/lib/python3.12/config-3.12-i386-linux-gnu/libpython3.12.so -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.12 -DPython_EXECUTABLE=/usr/bin/python3.12 -DPython_LIBRARY=/usr/lib/python3.12/config-3.12-i386-linux-gnu/libpython3.12.so -DPython_INCLUDE_DIR=/usr/include/python3.12 -DPython3_EXECUTABLE=/usr/bin/python3.12 -DPython3_LIBRARY=/usr/lib/python3.12/config-3.12-i386-linux-gnu/libpython3.12.so -DPython3_INCLUDE_DIR=/usr/include/python3.12 ../../.. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (0.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED PYTHON_EXECUTABLE PYTHON_INCLUDE_DIR PYTHON_LIBRARY Python3_EXECUTABLE Python3_INCLUDE_DIR Python3_LIBRARY Python_EXECUTABLE Python_INCLUDE_DIR Python_LIBRARY -- Build files have been written to: /build/reproducible-path/libslow5lib-0.7.0+dfsg/.pybuild/cpython3_3.12_slow5/build make[1]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' dh_auto_build cd obj-i686-linux-gnu && make -j11 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libslow5lib-0.7.0+dfsg -B/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' make -f CMakeFiles/slow5_static.dir/build.make CMakeFiles/slow5_static.dir/depend make -f CMakeFiles/slow5.dir/build.make CMakeFiles/slow5.dir/depend make[4]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libslow5lib-0.7.0+dfsg /build/reproducible-path/libslow5lib-0.7.0+dfsg /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu/CMakeFiles/slow5_static.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libslow5lib-0.7.0+dfsg /build/reproducible-path/libslow5lib-0.7.0+dfsg /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu/CMakeFiles/slow5.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' make -f CMakeFiles/slow5_static.dir/build.make CMakeFiles/slow5_static.dir/build make[4]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' [ 10%] Building C object CMakeFiles/slow5_static.dir/src/slow5_idx.c.o make -f CMakeFiles/slow5.dir/build.make CMakeFiles/slow5.dir/build [ 30%] Building C object CMakeFiles/slow5_static.dir/src/slow5_press.c.o [ 30%] Building C object CMakeFiles/slow5_static.dir/src/slow5_misc.c.o [ 40%] Building C object CMakeFiles/slow5_static.dir/src/slow5.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_idx.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_idx.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_idx.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_idx.c /usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_misc.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_misc.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_misc.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_misc.c make[4]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' /usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5.c.o -MF CMakeFiles/slow5_static.dir/src/slow5.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c /usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_press.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_press.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_press.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_press.c [ 60%] Building C object CMakeFiles/slow5.dir/src/slow5_idx.c.o [ 60%] Building C object CMakeFiles/slow5.dir/src/slow5.c.o [ 70%] Building C object CMakeFiles/slow5.dir/src/slow5_misc.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_idx.c.o -MF CMakeFiles/slow5.dir/src/slow5_idx.c.o.d -o CMakeFiles/slow5.dir/src/slow5_idx.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_idx.c /usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_misc.c.o -MF CMakeFiles/slow5.dir/src/slow5_misc.c.o.d -o CMakeFiles/slow5.dir/src/slow5_misc.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_misc.c [ 80%] Building C object CMakeFiles/slow5.dir/src/slow5_press.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5.c.o -MF CMakeFiles/slow5.dir/src/slow5.c.o.d -o CMakeFiles/slow5.dir/src/slow5.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c /usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_press.c.o -MF CMakeFiles/slow5.dir/src/slow5_press.c.o.d -o CMakeFiles/slow5.dir/src/slow5_press.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_press.c In file included from /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5.h:55, from /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:40: /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c: In function ‘slow5_get_mem’: /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:80:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:2461:9: note: in expansion of macro ‘SLOW5_ERROR’ 2461 | SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.", | ^~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c: In function ‘slow5_rec_aux_parse’: /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:80:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:3083:17: note: in expansion of macro ‘SLOW5_ERROR’ 3083 | SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size); | ^~~~~~~~~~~ In file included from /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5.h:55, from /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:40: /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c: In function ‘slow5_get_mem’: /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:80:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:2461:9: note: in expansion of macro ‘SLOW5_ERROR’ 2461 | SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.", | ^~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c: In function ‘slow5_rec_aux_parse’: /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:80:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:3083:17: note: in expansion of macro ‘SLOW5_ERROR’ 3083 | SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size); | ^~~~~~~~~~~ [ 90%] Linking C shared library libslow5.so /usr/bin/cmake -E cmake_link_script CMakeFiles/slow5.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libslow5.so.0 -o libslow5.so.0 CMakeFiles/slow5.dir/src/slow5.c.o CMakeFiles/slow5.dir/src/slow5_idx.c.o CMakeFiles/slow5.dir/src/slow5_misc.c.o CMakeFiles/slow5.dir/src/slow5_press.c.o -lzstd /usr/bin/cmake -E cmake_symlink_library libslow5.so.0 libslow5.so.0 libslow5.so make[4]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' [100%] Linking C static library libslow5_static.a /usr/bin/cmake -P CMakeFiles/slow5_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/slow5_static.dir/link.txt --verbose=1 [100%] Built target slow5 /usr/bin/ar qc libslow5_static.a CMakeFiles/slow5_static.dir/src/slow5.c.o CMakeFiles/slow5_static.dir/src/slow5_idx.c.o CMakeFiles/slow5_static.dir/src/slow5_misc.c.o CMakeFiles/slow5_static.dir/src/slow5_press.c.o /usr/bin/ranlib libslow5_static.a make[4]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' [100%] Built target slow5_static make[3]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' for py in `py3versions -s`; do \ $py setup.py build; \ done /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running build running build_ext Compiling python/pyslow5.pyx because it changed. [1/1] Cythonizing python/pyslow5.pyx building 'pyslow5' extension creating build creating build/temp.linux-x86_64-cpython-312 creating build/temp.linux-x86_64-cpython-312/python creating build/temp.linux-x86_64-cpython-312/src i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c python/pyslow5.c -o build/temp.linux-x86_64-cpython-312/python/pyslow5.o -g -Wall -O2 -std=c99 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from python/pyslow5.c:1294: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ python/pyslow5.c: In function ‘__pyx_pf_7pyslow5_4Open_62write_record_batch’: python/pyslow5.c:46426:14: warning: ‘__pyx_v_ret’ may be used uninitialized [-Wmaybe-uninitialized] 46426 | if (__pyx_t_5) { | ^ python/pyslow5.c:42930:8: note: ‘__pyx_v_ret’ was declared here 42930 | long __pyx_v_ret; | ^~~~~~~~~~~ python/pyslow5.c: In function ‘__pyx_pf_7pyslow5_4Open_60write_record’: python/pyslow5.c:42319:10: warning: ‘__pyx_v_ret’ may be used uninitialized [-Wmaybe-uninitialized] 42319 | if (__pyx_t_7) { | ^ python/pyslow5.c:40075:8: note: ‘__pyx_v_ret’ was declared here 40075 | long __pyx_v_ret; | ^~~~~~~~~~~ i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c python/slow5threads.c -o build/temp.linux-x86_64-cpython-312/python/slow5threads.o -g -Wall -O2 -std=c99 i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/slow5.c -o build/temp.linux-x86_64-cpython-312/src/slow5.o -g -Wall -O2 -std=c99 src/slow5.c: In function ‘slow5_init’: src/slow5.c:191:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 191 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { | ^~ src/slow5.c: In function ‘slow5_init_empty’: src/slow5.c:265:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 265 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { | ^~ src/slow5.c: In function ‘slow5_get_mem’: src/slow5.c:2460:49: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2460 | if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) { | ^~ In file included from include/slow5/slow5.h:55, from src/slow5.c:40: include/slow5/slow5_error.h:80:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ src/slow5.c:2461:9: note: in expansion of macro ‘SLOW5_ERROR’ 2461 | SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.", | ^~~~~~~~~~~ src/slow5.c: In function ‘slow5_rec_aux_parse’: include/slow5/slow5_error.h:80:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ src/slow5.c:3083:17: note: in expansion of macro ‘SLOW5_ERROR’ 3083 | SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size); | ^~~~~~~~~~~ i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/slow5_idx.c -o build/temp.linux-x86_64-cpython-312/src/slow5_idx.o -g -Wall -O2 -std=c99 i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/slow5_misc.c -o build/temp.linux-x86_64-cpython-312/src/slow5_misc.o -g -Wall -O2 -std=c99 i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/slow5_press.c -o build/temp.linux-x86_64-cpython-312/src/slow5_press.o -g -Wall -O2 -std=c99 src/slow5_press.c: In function ‘slow5_fwrite_compress’: src/slow5_press.c:558:27: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 558 | if (bytes != size * nmemb || ferror(fp)) { | ^~ src/slow5_press.c:559:31: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 559 | if (bytes != size * nmemb) { | ^~ src/slow5_press.c: In function ‘slow5_pread_depress_solo’: src/slow5_press.c:686:47: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 686 | if ((ret = pread(fd, raw, count, offset)) != count) { | ^~ creating build/lib.linux-x86_64-cpython-312 i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/python/pyslow5.o build/temp.linux-x86_64-cpython-312/python/slow5threads.o build/temp.linux-x86_64-cpython-312/src/slow5.o build/temp.linux-x86_64-cpython-312/src/slow5_idx.o build/temp.linux-x86_64-cpython-312/src/slow5_misc.o build/temp.linux-x86_64-cpython-312/src/slow5_press.o -L. -L/usr/lib/i386-linux-gnu -lm -lz -lstreamvbyte -o build/lib.linux-x86_64-cpython-312/pyslow5.cpython-312-i386-linux-gnu.so make[1]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' mkdir -p lib cp -a obj-i686-linux-gnu/libslow5_static.a lib/libslow5.a /usr/bin/make -C test zstd=1 make[2]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/test' mkdir bin cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ endian_test.c -o bin/endian_test -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_helpers.c -o bin/unit_test_helpers -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_press.c -o bin/unit_test_press -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_ascii.c -o bin/unit_test_ascii -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_binary.c -o bin/unit_test_binary -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ convert_slow5_test.c -o bin/convert_slow5_test -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_two_rg.c -o bin/unit_test_two_rg -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_lossless.c -o bin/unit_test_lossless -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_empty.c -o bin/unit_test_empty -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_enum.c -o bin/unit_test_enum -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd make[2]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/test' for pys in `py3versions -s`; do \ echo $pys; \ pydir=`$pys debian/get-pyver-dir.py`; \ echo $pydir; X=0; \ PYTHONPATH=`pwd`/build/$pydir $pys -m unittest -v python/test.py || X=$?; \ if [ "" != 0 ]; then exit $X; fi; \ done python3.12 lib.linux-x86_64-cpython-312 test_nonExistant_aux (python.test.TestAUX.test_nonExistant_aux) ... [slow5_idx_init::INFO] Index file not found. Creating an index at 'examples/example2.slow5.idx'. 24-Oct-24 22:06:01 - [WARNING]: get_read unknown aux name: noExistTest ok test_read_id (python.test.TestAUX.test_read_id) ... 24-Oct-24 22:06:01 - [WARNING]: get_read unknown aux name: noExistTest ok test_read_number (python.test.TestAUX.test_read_number) ... 24-Oct-24 22:06:01 - [WARNING]: get_read unknown aux name: noExistTest ok test_start_mux (python.test.TestAUX.test_start_mux) ... 24-Oct-24 22:06:01 - [WARNING]: get_read unknown aux name: noExistTest ok test_get_aux_names (python.test.TestAuxAll.test_get_aux_names) ... ok test_get_aux_types (python.test.TestAuxAll.test_get_aux_types) ... ok test_get_read_all_aux (python.test.TestAuxAll.test_get_read_all_aux) ... ok test_seq_reads_pA_aux_all (python.test.TestAuxAll.test_seq_reads_pA_aux_all) ... ok test_class_methods (python.test.TestBase.test_class_methods) ... [slow5_idx_init::INFO] Index file not found. Creating an index at 'examples/example.slow5.idx'. ok test_digitisation (python.test.TestBase.test_digitisation) ... ok test_len_raw_signal (python.test.TestBase.test_len_raw_signal) ... ok test_offset (python.test.TestBase.test_offset) ... ok test_pylen_signal (python.test.TestBase.test_pylen_signal) ... ok test_range (python.test.TestBase.test_range) ... ok test_read_group (python.test.TestBase.test_read_group) ... ok test_read_id (python.test.TestBase.test_read_id) ... ok test_read_type (python.test.TestBase.test_read_type) ... ok test_sampling_rate (python.test.TestBase.test_sampling_rate) ... ok test_signal (python.test.TestBase.test_signal) ... ok test_get_all_headers (python.test.TestHeaders.test_get_all_headers) ... ok test_get_header_names (python.test.TestHeaders.test_get_header_names) ... ok test_digitisation (python.test.TestRandomAccess.test_digitisation) ... ok test_len_raw_signal (python.test.TestRandomAccess.test_len_raw_signal) ... ok test_offset (python.test.TestRandomAccess.test_offset) ... ok test_pylen_signal (python.test.TestRandomAccess.test_pylen_signal) ... ok test_range (python.test.TestRandomAccess.test_range) ... ok test_read_group (python.test.TestRandomAccess.test_read_group) ... ok test_read_id (python.test.TestRandomAccess.test_read_id) ... ok test_sampling_rate (python.test.TestRandomAccess.test_sampling_rate) ... ok test_signal (python.test.TestRandomAccess.test_signal) ... ok test_seq_reads (python.test.TestSequentialRead.test_seq_reads) ... ok test_get_empty_header (python.test.TestWrite.test_get_empty_header) ... ok test_get_empty_record (python.test.TestWrite.test_get_empty_record) ... ok test_write_header (python.test.TestWrite.test_write_header) ... ok test_write_records (python.test.TestWrite.test_write_records) ... ok test_get_empty_aux (python.test.TestWriteAux.test_get_empty_aux) ... ok test_write_records_aux (python.test.TestWriteAux.test_write_records_aux) ... ok test_write_matches_read (python.test.TestWriteData.test_write_matches_read) ... [slow5_idx_init::INFO] Index file not found. Creating an index at 'examples/example_write.slow5.idx'. ok test_base_reads (python.test.TestYieldRead.test_base_reads) ... ok test_reads_with_no_exist (python.test.TestYieldRead.test_reads_with_no_exist) ... [slow5_idx_get::ERROR] Read ID 'null_read' was not found. At src/slow5_idx.c:441 ok test_seq_reads_multi (python.test.testMultiThreading.test_seq_reads_multi) ... ok test_get_reads_multi (python.test.testMultiThreadingRandom.test_get_reads_multi) ... ok ---------------------------------------------------------------------- Ran 42 tests in 1.048s OK r0 r1 r2 r3 r4 r5 0a238451-b9ed-446d-a152-badd074006c4 0d624d4b-671f-40b8-9798-84f2ccc4d7fc r0 r1 r2 r3 r4 r5 0a238451-b9ed-446d-a152-badd074006c4 0d624d4b-671f-40b8-9798-84f2ccc4d7fc make[1]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake cd obj-i686-linux-gnu && make -j11 install DESTDIR=/build/reproducible-path/libslow5lib-0.7.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libslow5lib-0.7.0+dfsg -B/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/libslow5lib-0.7.0+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libslow5.so.0 -- Installing: /build/reproducible-path/libslow5lib-0.7.0+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libslow5.so -- Up-to-date: /build/reproducible-path/libslow5lib-0.7.0+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libslow5.so.0 -- Up-to-date: /build/reproducible-path/libslow5lib-0.7.0+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libslow5.so -- Installing: /build/reproducible-path/libslow5lib-0.7.0+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libslow5_static.a make[1]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' mv debian/tmp/usr/lib/i386-linux-gnu/libslow5_static.a debian/tmp/usr/lib/i386-linux-gnu/libslow5.a d-shlibmove --commit \ --t64 \ --multiarch \ --devunversioned \ --exclude-la \ --movedev include usr \ debian/tmp/usr/lib/i386-linux-gnu/libslow5.so Library package automatic movement utility --> libzstd-dev package exists. set -e install -d -m 755 debian/libslow5-dev/usr/lib/i386-linux-gnu install -d -m 755 debian/libslow5-0t64/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libslow5.a debian/libslow5-dev/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libslow5.so debian/libslow5-dev/usr/lib/i386-linux-gnu mv /build/reproducible-path/libslow5lib-0.7.0+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libslow5.so.0 debian/libslow5-0t64/usr/lib/i386-linux-gnu PKGDEV=libslow5-dev PKGSHL=libslow5-0t64 install -d -m 755 debian/libslow5-dev/usr mv include debian/libslow5-dev/usr dh_install dh_install -plibslow5-dev src/*.h usr/include/slow5/ dh_install -ppython3-slow5 build/lib.*-*/* usr/lib/python3/dist-packages/ make[1]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' dh_installexamples dh_installexamples -ppython3-slow5 python/example.py dh_installexamples -ppython3-slow5 examples/*.slow5 make[1]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' dh_python3 -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux.so.2.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux.so.2.usr-is-merged dpkg-shlibdeps: warning: symbol streamvbyte_encode used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol zigzag_delta_decode used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateInit2_ used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol streamvbyte_decode used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol zigzag_delta_encode used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol deflate used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol deflateEnd used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateReset used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateEnd used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol deflateReset used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dpkg-gencontrol: warning: package libslow5-0t64: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: Depends field of package libslow5-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libslow5-dev: substitution variable ${devlibs:Depends} unused, but is defined dpkg-gencontrol: warning: package libslow5-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libslow5-0t64: substitution variable ${python3:Depends} unused, but is defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'libslow5-dev' in '../libslow5-dev_0.7.0+dfsg-3_i386.deb'. dpkg-deb: building package 'libslow5-0t64' in '../libslow5-0t64_0.7.0+dfsg-3_i386.deb'. dpkg-deb: building package 'libslow5-0t64-dbgsym' in '../libslow5-0t64-dbgsym_0.7.0+dfsg-3_i386.deb'. dpkg-deb: building package 'python3-slow5' in '../python3-slow5_0.7.0+dfsg-3_i386.deb'. dpkg-deb: building package 'python3-slow5-dbgsym' in '../python3-slow5-dbgsym_0.7.0+dfsg-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../libslow5lib_0.7.0+dfsg-3_i386.buildinfo dpkg-genchanges --build=binary -O../libslow5lib_0.7.0+dfsg-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/51705 and its subdirectories I: Current time: Thu Oct 24 22:06:17 -12 2024 I: pbuilder-time-stamp: 1729850777 Fri Oct 25 10:06:18 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Fri Oct 25 10:06:18 UTC 2024 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Fri Oct 25 10:08:00 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. Fri Oct 25 10:08:01 UTC 2024 I: libslow5lib_0.7.0+dfsg-3_i386.changes: Format: 1.8 Date: Wed, 24 Jul 2024 22:36:50 +0200 Source: libslow5lib Binary: libslow5-0t64 libslow5-0t64-dbgsym libslow5-dev python3-slow5 python3-slow5-dbgsym Architecture: i386 Version: 0.7.0+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libslow5-0t64 - library for reading & writing SLOW5 files libslow5-dev - header and static library for reading & writing SLOW5 files python3-slow5 - Python3 modul for reading & writing SLOW5 files Closes: 1075205 Changes: libslow5lib (0.7.0+dfsg-3) unstable; urgency=medium . * use_debian_packaged_streamvbyte.patch: fix a type error. (Closes: #1075205) * d/control: add myself to uploaders. * d/control: declare compliance to standards version 4.7.0. * d/s/lintian-overrides: flag error caused by t64 transition. Checksums-Sha1: 4540cefe6377fac48f1b54659b1bdec6a816fe83 143592 libslow5-0t64-dbgsym_0.7.0+dfsg-3_i386.deb a29e502581271cbf04876f5122a4abb83f0b1c9e 62040 libslow5-0t64_0.7.0+dfsg-3_i386.deb b8c89a96e8a382fbee2e364aa0eb065312932b83 83644 libslow5-dev_0.7.0+dfsg-3_i386.deb 2a84a2349109f1d3fe54e486ef59c81c75239b63 8633 libslow5lib_0.7.0+dfsg-3_i386.buildinfo d694956a3e93560709b5305bb3f1a09dfe12e858 1346652 python3-slow5-dbgsym_0.7.0+dfsg-3_i386.deb 5d1f49993de627003f4a2a51e6e50dc7a4393c1a 426804 python3-slow5_0.7.0+dfsg-3_i386.deb Checksums-Sha256: b32789ee010531d549e84ae9a7adbcb95a1d40732a37cd1ad0b0e0c0be06e369 143592 libslow5-0t64-dbgsym_0.7.0+dfsg-3_i386.deb d6c88b1d344b45fb937f5e2e6d601a05016f4083bdcc7ab6dceea346420b7081 62040 libslow5-0t64_0.7.0+dfsg-3_i386.deb 3395c060fac0e0e32c672089be06ca01a951499ce8d056c275d50a9a33a05bd8 83644 libslow5-dev_0.7.0+dfsg-3_i386.deb afea0ce431f63877c413978845331d1be7985722601f6b74815b248a9cbca0fd 8633 libslow5lib_0.7.0+dfsg-3_i386.buildinfo e292dd8308f31d8fd1f47a4f5773d8688a8efe39eae1ddbf99cb3bc7ccd7d0c7 1346652 python3-slow5-dbgsym_0.7.0+dfsg-3_i386.deb 66377b74f24679f60574c7a20770f40a3e1e4a707710874067d266f6f72becff 426804 python3-slow5_0.7.0+dfsg-3_i386.deb Files: cddcfed1ae3e1893e054e172eca8ee60 143592 debug optional libslow5-0t64-dbgsym_0.7.0+dfsg-3_i386.deb 06036966c3e35461d3c61e9841652086 62040 libs optional libslow5-0t64_0.7.0+dfsg-3_i386.deb 97cb7a3dedee4bbce98b3a14842c4593 83644 libdevel optional libslow5-dev_0.7.0+dfsg-3_i386.deb fb535b42da45f768e7afa6ff1504d4ad 8633 science optional libslow5lib_0.7.0+dfsg-3_i386.buildinfo a526c33d681b09965d971b1cff4e5176 1346652 debug optional python3-slow5-dbgsym_0.7.0+dfsg-3_i386.deb ad3a479c564aad1607d000b0d339fbe0 426804 python optional python3-slow5_0.7.0+dfsg-3_i386.deb Fri Oct 25 10:08:02 UTC 2024 I: diffoscope 281 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_12-26449.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.gxwa0Ywi/libslow5lib_0.7.0+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.gxwa0Ywi/libslow5lib_0.7.0+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.gxwa0Ywi/libslow5lib_0.7.0+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.gxwa0Ywi/b1/libslow5lib_0.7.0+dfsg-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.gxwa0Ywi/b2/libslow5lib_0.7.0+dfsg-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.427s) 0.427s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.043s) 0.043s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 783ms CPU time consumed: 779ms Fri Oct 25 10:08:03 UTC 2024 I: diffoscope 281 found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 25 10:08:03 UTC 2024 I: libslow5lib from trixie built successfully and reproducibly on i386. Fri Oct 25 10:08:04 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Oct 25 10:08:04 UTC 2024 I: Submitting 12K b1/libslow5lib_0.7.0+dfsg-3_i386.buildinfo.asc Fri Oct 25 10:08:05 UTC 2024 I: Submitting 12K b2/libslow5lib_0.7.0+dfsg-3_i386.buildinfo.asc Fri Oct 25 10:08:06 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Oct 25 10:08:06 UTC 2024 I: Done submitting .buildinfo files. Fri Oct 25 10:08:06 UTC 2024 I: Removing signed libslow5lib_0.7.0+dfsg-3_i386.buildinfo.asc files: removed './b1/libslow5lib_0.7.0+dfsg-3_i386.buildinfo.asc' removed './b2/libslow5lib_0.7.0+dfsg-3_i386.buildinfo.asc'