Thu Apr 11 17:21:55 UTC 2024 I: starting to build libgff/trixie/i386 on jenkins on '2024-04-11 17:21' Thu Apr 11 17:21:55 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_3/20464/console.log Thu Apr 11 17:21:55 UTC 2024 I: Downloading source for trixie/libgff=2.0.0-3 --2024-04-11 17:21:55-- http://deb.debian.org/debian/pool/main/libg/libgff/libgff_2.0.0-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2028 (2.0K) [text/prs.lines.tag] Saving to: ‘libgff_2.0.0-3.dsc’ 0K . 100% 325M=0s 2024-04-11 17:21:55 (325 MB/s) - ‘libgff_2.0.0-3.dsc’ saved [2028/2028] Thu Apr 11 17:21:55 UTC 2024 I: libgff_2.0.0-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libgff Binary: libgff-dev Architecture: any Version: 2.0.0-3 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://github.com/COMBINE-lab/libgff Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/libgff Vcs-Git: https://salsa.debian.org/med-team/libgff.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, python-pysam-tests Build-Depends: debhelper-compat (= 13), cmake, debhelper Package-List: libgff-dev deb libdevel optional arch=any Checksums-Sha1: 6127e9f35dee7fc254a1ed280ff5337d42d814ba 102152 libgff_2.0.0.orig.tar.gz 0395c0f92eb407fe62dd62b345429e2f90972d84 4272 libgff_2.0.0-3.debian.tar.xz Checksums-Sha256: 7656b19459a7ca7d2fd0fcec4f2e0fd0deec1b4f39c703a114e8f4c22d82a99c 102152 libgff_2.0.0.orig.tar.gz 095e505f9fa1f984ed38dc5aef405f2f1346a853f2c7e7511e7b790e3da457f2 4272 libgff_2.0.0-3.debian.tar.xz Files: 2154f6c0a4ea49cea86205d9a737be84 102152 libgff_2.0.0.orig.tar.gz 310111f6fac08140c987b75f43ff8982 4272 libgff_2.0.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHq00MRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFXnA/9Gu+DmJ6hZC/WNlMbCX/olZSQOind3axN WEdhGQ5r4FRtKZt1tfqsuFVnRvczkv8CXMML2imuSVtXvrJdshUkqebfgRlVQ3So c8jOqpf8risP9duQ6/+WuW5QKsC0Ht8Y/yeJhPrXlOBfcHlbLHYk1PJ2LPAAZZ2j qib96ZWjAFX2aNUsjMBNL4gdTxMeY46sf2c1Cu2veaJX4uRffrIchS7HQ7o3GkSi NQb3/Od9EvNMArqN661SiE9eHdfYFa+Cpp+gSAjsISllSpSR9sJd852fA3a9vKAX VmK+fDXyNcTfTLZfjVONAYzPTLiHlfpeiZfz3/V/+XUsPcXOLFFz18wsv2m9klHy FORB4+1zrxSR/P85xbhgA+aBxmZ0g1HGJ2Q0Spq9gs5JFcwygP2i4Lc6L2YelhrO Cc1xndxGCwZMBw3jWxX5cNdI215Z5ImgbQmNud9UIVtlybBt+UYW8YG4NnYpsHki 4Dps6/K5PKfRAiBgagdt54aSy2WIe066hZtbHk9/qTYZ47iUIuEvCAfKgOuiA8VU Cm7phc7NchL4hmxExGPbNmuUBIOdlYuC/X7Le4Dzn3DJ/rjTr97SVk5nqp0EhzKt ND9SLwfrnkSHhYqN4qgUe4uofmVVz2ACsWdANSNE/lLeHm1m46De+O2xXZxGXNf+ 8J6MeosWktI= =qsCY -----END PGP SIGNATURE----- Thu Apr 11 17:21:55 UTC 2024 I: Checking whether the package is not for us Thu Apr 11 17:21:55 UTC 2024 I: Starting 1st build on remote node ionos2-i386.debian.net. Thu Apr 11 17:21:55 UTC 2024 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Thu Apr 11 17:23:11 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Apr 11 05:21:57 -12 2024 I: pbuilder-time-stamp: 1712856117 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [libgff_2.0.0-3.dsc] I: copying [./libgff_2.0.0.orig.tar.gz] I: copying [./libgff_2.0.0-3.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Jan 21 15:37:39 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libgff_2.0.0-3.dsc: no acceptable signature found dpkg-source: info: extracting libgff in libgff-2.0.0 dpkg-source: info: unpacking libgff_2.0.0.orig.tar.gz dpkg-source: info: unpacking libgff_2.0.0-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/48366/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='19d0965abdf6497096ccc708b7a0ef04' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='48366' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gn6jYsZH/pbuilderrc_V4H6 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gn6jYsZH/b1 --logfile b1/build.log libgff_2.0.0-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 10 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/48366/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19874 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libjsoncpp25{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 36.4 MB of archives. After unpacking 133 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libproc2-0 i386 2:4.0.4-4 [65.4 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 procps i386 2:4.0.4-4 [876 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-2+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 libmagic1 i386 1:5.45-2+b1 [114 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-2+b1 [43.0 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-3 [1195 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.39.3-6 [93.3 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.0-3 [1413 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b2 [727 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libarchive13 i386 3.7.2-1 [386 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b3 [314 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-4+b1 [20.7 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-4+b1 [60.7 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.13+dfsg-5+b3 [196 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.59.0-1 [82.5 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libpsl5 i386 0.21.2-1+b1 [59.7 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libssh2-1 i386 1.11.0-4 [224 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 libcurl4 i386 8.5.0-2 [463 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.5.0-2+b2 [104 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libjsoncpp25 i386 1.9.5-6+b2 [89.2 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 librhash0 i386 1.4.3-3+b1 [143 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libuv1 i386 1.48.0-1 [156 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 cmake-data all 3.28.3-1 [2128 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 cmake i386 3.28.3-1 [11.7 MB] Get: 36 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 43 http://deb.debian.org/debian trixie/main i386 libelf1 i386 0.190-1+b1 [182 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1 [118 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Fetched 36.4 MB in 1s (34.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19874 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_i386.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../04-libmagic1_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic1:i386 (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-2+b1_i386.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-3_i386.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.39.3-6_i386.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../10-libpipeline1_1.5.7-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.12.0-3_i386.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../17-libicu72_72.1-4+b1_i386.deb ... Unpacking libicu72:i386 (72.1-4+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../18-libxml2_2.9.14+dfsg-1.3+b2_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package libarchive13:i386. Preparing to unpack .../19-libarchive13_3.7.2-1_i386.deb ... Unpacking libarchive13:i386 (3.7.2-1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../20-libbrotli1_1.1.0-2+b3_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b3) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../21-libsasl2-modules-db_2.1.28+dfsg1-4+b1_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../22-libsasl2-2_2.1.28+dfsg1-4+b1_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../23-libldap-2.5-0_2.5.13+dfsg-5+b3_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.13+dfsg-5+b3) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../24-libnghttp2-14_1.59.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.59.0-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../25-libpsl5_0.21.2-1+b1_i386.deb ... Unpacking libpsl5:i386 (0.21.2-1+b1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../26-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../27-libssh2-1_1.11.0-4_i386.deb ... Unpacking libssh2-1:i386 (1.11.0-4) ... Selecting previously unselected package libcurl4:i386. Preparing to unpack .../28-libcurl4_8.5.0-2_i386.deb ... Unpacking libcurl4:i386 (8.5.0-2) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../29-libexpat1_2.5.0-2+b2_i386.deb ... Unpacking libexpat1:i386 (2.5.0-2+b2) ... Selecting previously unselected package libjsoncpp25:i386. Preparing to unpack .../30-libjsoncpp25_1.9.5-6+b2_i386.deb ... Unpacking libjsoncpp25:i386 (1.9.5-6+b2) ... Selecting previously unselected package librhash0:i386. Preparing to unpack .../31-librhash0_1.4.3-3+b1_i386.deb ... Unpacking librhash0:i386 (1.4.3-3+b1) ... Selecting previously unselected package libuv1:i386. Preparing to unpack .../32-libuv1_1.48.0-1_i386.deb ... Unpacking libuv1:i386 (1.48.0-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../33-cmake-data_3.28.3-1_all.deb ... 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Setting up libuv1:i386 (1.48.0-1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libproc2-0:i386 (2:4.0.4-4) ... Setting up autopoint (0.21-14) ... Setting up libjsoncpp25:i386 (1.9.5-6+b2) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-4+b1) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.22) ... Setting up librhash0:i386 (1.4.3-3+b1) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-4) ... Setting up libsub-override-perl (0.10-1) ... Setting up libssh2-1:i386 (1.11.0-4) ... Setting up cmake-data (3.28.3-1) ... Setting up libelf1:i386 (0.190-1+b1) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libarchive13:i386 (3.7.2-1) ... Setting up libldap-2.5-0:i386 (2.5.13+dfsg-5+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libcurl4:i386 (8.5.0-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up cmake (3.28.3-1) ... Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.37-15) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libgff-2.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libgff_2.0.0-3_source.changes dpkg-buildpackage: info: source package libgff dpkg-buildpackage: info: source version 2.0.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu .. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Install prefix : /usr version: 2.0.0 -- Configuring done (3.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu dh_auto_build cd obj-i686-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libgff-2.0.0 -B/build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu' make -f CMakeFiles/gff.dir/build.make CMakeFiles/gff.dir/depend make[3]: Entering directory '/build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu' cd /build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libgff-2.0.0 /build/reproducible-path/libgff-2.0.0 /build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu /build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu /build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu/CMakeFiles/gff.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu' make -f CMakeFiles/gff.dir/build.make CMakeFiles/gff.dir/build make[3]: Entering directory '/build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu' [ 9%] Building CXX object CMakeFiles/gff.dir/src/gdna.cpp.o [ 18%] Building CXX object CMakeFiles/gff.dir/src/codons.cpp.o [ 27%] Building CXX object CMakeFiles/gff.dir/src/GBase.cpp.o [ 36%] Building CXX object CMakeFiles/gff.dir/src/GFastaIndex.cpp.o /usr/bin/c++ -I/build/reproducible-path/libgff-2.0.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libgff-2.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -D_FILE_OFFSET_BITS=64 -std=c++14 -MD -MT CMakeFiles/gff.dir/src/codons.cpp.o -MF CMakeFiles/gff.dir/src/codons.cpp.o.d -o CMakeFiles/gff.dir/src/codons.cpp.o -c /build/reproducible-path/libgff-2.0.0/src/codons.cpp [ 45%] Building CXX object CMakeFiles/gff.dir/src/GArgs.cpp.o /usr/bin/c++ -I/build/reproducible-path/libgff-2.0.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libgff-2.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -D_FILE_OFFSET_BITS=64 -std=c++14 -MD -MT CMakeFiles/gff.dir/src/GBase.cpp.o -MF CMakeFiles/gff.dir/src/GBase.cpp.o.d -o CMakeFiles/gff.dir/src/GBase.cpp.o -c /build/reproducible-path/libgff-2.0.0/src/GBase.cpp [ 54%] Building CXX object CMakeFiles/gff.dir/src/GFaSeqGet.cpp.o /usr/bin/c++ -I/build/reproducible-path/libgff-2.0.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libgff-2.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -D_FILE_OFFSET_BITS=64 -std=c++14 -MD -MT CMakeFiles/gff.dir/src/gdna.cpp.o -MF CMakeFiles/gff.dir/src/gdna.cpp.o.d -o CMakeFiles/gff.dir/src/gdna.cpp.o -c /build/reproducible-path/libgff-2.0.0/src/gdna.cpp /usr/bin/c++ -I/build/reproducible-path/libgff-2.0.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libgff-2.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -D_FILE_OFFSET_BITS=64 -std=c++14 -MD -MT CMakeFiles/gff.dir/src/GArgs.cpp.o -MF CMakeFiles/gff.dir/src/GArgs.cpp.o.d -o CMakeFiles/gff.dir/src/GArgs.cpp.o -c /build/reproducible-path/libgff-2.0.0/src/GArgs.cpp /usr/bin/c++ -I/build/reproducible-path/libgff-2.0.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libgff-2.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -D_FILE_OFFSET_BITS=64 -std=c++14 -MD -MT CMakeFiles/gff.dir/src/GFaSeqGet.cpp.o -MF CMakeFiles/gff.dir/src/GFaSeqGet.cpp.o.d -o CMakeFiles/gff.dir/src/GFaSeqGet.cpp.o -c /build/reproducible-path/libgff-2.0.0/src/GFaSeqGet.cpp /usr/bin/c++ -I/build/reproducible-path/libgff-2.0.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libgff-2.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -D_FILE_OFFSET_BITS=64 -std=c++14 -MD -MT CMakeFiles/gff.dir/src/GFastaIndex.cpp.o -MF CMakeFiles/gff.dir/src/GFastaIndex.cpp.o.d -o CMakeFiles/gff.dir/src/GFastaIndex.cpp.o -c /build/reproducible-path/libgff-2.0.0/src/GFastaIndex.cpp [ 63%] Building CXX object CMakeFiles/gff.dir/src/gff.cpp.o /usr/bin/c++ -I/build/reproducible-path/libgff-2.0.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libgff-2.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -D_FILE_OFFSET_BITS=64 -std=c++14 -MD -MT CMakeFiles/gff.dir/src/gff.cpp.o -MF CMakeFiles/gff.dir/src/gff.cpp.o.d -o CMakeFiles/gff.dir/src/gff.cpp.o -c /build/reproducible-path/libgff-2.0.0/src/gff.cpp [ 72%] Building CXX object CMakeFiles/gff.dir/src/GStr.cpp.o /usr/bin/c++ -I/build/reproducible-path/libgff-2.0.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libgff-2.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -D_FILE_OFFSET_BITS=64 -std=c++14 -MD -MT CMakeFiles/gff.dir/src/GStr.cpp.o -MF CMakeFiles/gff.dir/src/GStr.cpp.o.d -o CMakeFiles/gff.dir/src/GStr.cpp.o -c /build/reproducible-path/libgff-2.0.0/src/GStr.cpp /build/reproducible-path/libgff-2.0.0/src/GStr.cpp: In function 'void GStr::prep_data(uint, uint)': /build/reproducible-path/libgff-2.0.0/src/GStr.cpp:57:27: warning: array subscript 1 is above array bounds of 'char [1]' [-Warray-bounds=] 57 | my_data->chars[len]=0; | ~~~~~~~~~~~~~~~~~~^ In file included from /build/reproducible-path/libgff-2.0.0/src/GStr.cpp:2: /build/reproducible-path/libgff-2.0.0/include/GStr.h:184:21: note: while referencing 'GStr::Data::chars' 184 | char chars[1]; | ^~~~~ In file included from /build/reproducible-path/libgff-2.0.0/include/GList.hh:8, from /build/reproducible-path/libgff-2.0.0/include/GFastaIndex.h:12, from /build/reproducible-path/libgff-2.0.0/include/GFaSeqGet.h:3, from /build/reproducible-path/libgff-2.0.0/include/gff.h:9, from /build/reproducible-path/libgff-2.0.0/src/gff.cpp:1: /build/reproducible-path/libgff-2.0.0/include/GVec.hh: In instantiation of 'void GVec::setCapacity(int) [with OBJ = GMapSeg]': /build/reproducible-path/libgff-2.0.0/include/GVec.hh:202:3: required from 'GVec::GVec(int) [with OBJ = GMapSeg]' /build/reproducible-path/libgff-2.0.0/include/gff.h:126:50: required from here /build/reproducible-path/libgff-2.0.0/include/GVec.hh:291:15: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class GMapSeg'; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libgff-2.0.0/include/gff.h:69:7: note: 'class GMapSeg' declared here 69 | class GMapSeg:public GSeg { | ^~~~~~~ /build/reproducible-path/libgff-2.0.0/include/GVec.hh: In instantiation of 'void GVec::setCapacity(int) [with OBJ = GSeg]': /build/reproducible-path/libgff-2.0.0/include/GVec.hh:202:3: required from 'GVec::GVec(int) [with OBJ = GSeg]' /build/reproducible-path/libgff-2.0.0/include/gff.h:310:4: required from here /build/reproducible-path/libgff-2.0.0/include/GVec.hh:291:15: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class GSeg'; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libgff-2.0.0/include/gff.h:6: /build/reproducible-path/libgff-2.0.0/include/GBase.h:308:7: note: 'class GSeg' declared here 308 | class GSeg { | ^~~~ /build/reproducible-path/libgff-2.0.0/include/GVec.hh: In instantiation of 'void GVec::setCapacity(int) [with OBJ = GeneCDS]': /build/reproducible-path/libgff-2.0.0/include/GVec.hh:202:3: required from 'GVec::GVec(int) [with OBJ = GeneCDS]' /build/reproducible-path/libgff-2.0.0/include/gff.h:1349:17: required from here /build/reproducible-path/libgff-2.0.0/include/GVec.hh:291:15: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class GeneCDS'; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libgff-2.0.0/include/gff.h:1338:7: note: 'class GeneCDS' declared here 1338 | class GeneCDS: public GSeg { | ^~~~~~~ /build/reproducible-path/libgff-2.0.0/include/GVec.hh: In instantiation of 'void GVec::setCapacity(int) [with OBJ = GffExon]': /build/reproducible-path/libgff-2.0.0/include/GVec.hh:202:3: required from 'GVec::GVec(int) [with OBJ = GffExon]' /build/reproducible-path/libgff-2.0.0/src/gff.cpp:2315:16: required from here /build/reproducible-path/libgff-2.0.0/include/GVec.hh:291:15: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class GffExon'; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libgff-2.0.0/include/gff.h:627:7: note: 'class GffExon' declared here 627 | class GffExon : public GSeg { | ^~~~~~~ /build/reproducible-path/libgff-2.0.0/include/GVec.hh: In instantiation of 'void GVec::setCapacity(int) [with OBJ = GSegMatch]': /build/reproducible-path/libgff-2.0.0/include/GVec.hh:202:3: required from 'GVec::GVec(int) [with OBJ = GSegMatch]' /build/reproducible-path/libgff-2.0.0/include/GList.hh:191:76: required from 'GArray::GArray(int (*)(pointer, pointer)) [with OBJ = GSegMatch; GCompareProc = int(void*, void*)]' /build/reproducible-path/libgff-2.0.0/include/gff.h:1349:27: required from here /build/reproducible-path/libgff-2.0.0/include/GVec.hh:291:15: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class GSegMatch'; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libgff-2.0.0/include/gff.h:1326:7: note: 'class GSegMatch' declared here 1326 | class GSegMatch { //keep track of "matching" overlaps of a GeneCDSChain with multiple GeneSegment containers | ^~~~~~~~~ /build/reproducible-path/libgff-2.0.0/include/GVec.hh: In instantiation of 'void GVec::Grow(int, OBJ&) [with OBJ = GSegMatch]': /build/reproducible-path/libgff-2.0.0/include/GVec.hh:437:9: required from 'void GVec::Insert(int, OBJ*) [with OBJ = GSegMatch]' /build/reproducible-path/libgff-2.0.0/include/GVec.hh:69:44: required from 'void GVec::Insert(int, OBJ) [with OBJ = GSegMatch]' /build/reproducible-path/libgff-2.0.0/include/GList.hh:234:21: required from 'int GArray::Add(OBJ*) [with OBJ = GSegMatch]' /build/reproducible-path/libgff-2.0.0/include/GList.hh:51:36: required from 'int GArray::Add(OBJ&) [with OBJ = GSegMatch]' /build/reproducible-path/libgff-2.0.0/include/gff.h:1362:13: required from here /build/reproducible-path/libgff-2.0.0/include/GVec.hh:358:15: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class GSegMatch'; use assignment or value-initialization instead [-Wclass-memaccess] 358 | memset(&newList[fCount+1], 0, (NewCapacity-fCount-1)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libgff-2.0.0/include/gff.h:1326:7: note: 'class GSegMatch' declared here 1326 | class GSegMatch { //keep track of "matching" overlaps of a GeneCDSChain with multiple GeneSegment containers | ^~~~~~~~~ In member function 'void GStr::prep_data(uint, uint)', inlined from 'GStr::GStr(char, int)' at /build/reproducible-path/libgff-2.0.0/src/GStr.cpp:193:12: /build/reproducible-path/libgff-2.0.0/src/GStr.cpp:57:27: warning: array subscript 1 is above array bounds of 'char [1]' [-Warray-bounds=] 57 | my_data->chars[len]=0; | ~~~~~~~~~~~~~~~~~~^ /build/reproducible-path/libgff-2.0.0/include/GStr.h: In constructor 'GStr::GStr(char, int)': /build/reproducible-path/libgff-2.0.0/include/GStr.h:184:21: note: while referencing 'GStr::Data::chars' 184 | char chars[1]; | ^~~~~ In member function 'void GStr::prep_data(uint, uint)', inlined from 'GStr GStr::operator+(int) const' at /build/reproducible-path/libgff-2.0.0/src/GStr.cpp:666:24: /build/reproducible-path/libgff-2.0.0/src/GStr.cpp:57:27: warning: array subscript 1 is above array bounds of 'char [1]' [-Warray-bounds=] 57 | my_data->chars[len]=0; | ~~~~~~~~~~~~~~~~~~^ /build/reproducible-path/libgff-2.0.0/include/GStr.h: In member function 'GStr GStr::operator+(int) const': /build/reproducible-path/libgff-2.0.0/include/GStr.h:184:21: note: while referencing 'GStr::Data::chars' 184 | char chars[1]; | ^~~~~ In member function 'void GStr::prep_data(uint, uint)', inlined from 'GStr GStr::operator+(char) const' at /build/reproducible-path/libgff-2.0.0/src/GStr.cpp:677:24: /build/reproducible-path/libgff-2.0.0/src/GStr.cpp:57:27: warning: array subscript 1 is above array bounds of 'char [1]' [-Warray-bounds=] 57 | my_data->chars[len]=0; | ~~~~~~~~~~~~~~~~~~^ /build/reproducible-path/libgff-2.0.0/include/GStr.h: In member function 'GStr GStr::operator+(char) const': /build/reproducible-path/libgff-2.0.0/include/GStr.h:184:21: note: while referencing 'GStr::Data::chars' 184 | char chars[1]; | ^~~~~ In member function 'void GStr::prep_data(uint, uint)', inlined from 'GStr GStr::operator+(double) const' at /build/reproducible-path/libgff-2.0.0/src/GStr.cpp:688:24: /build/reproducible-path/libgff-2.0.0/src/GStr.cpp:57:27: warning: array subscript 1 is above array bounds of 'char [1]' [-Warray-bounds=] 57 | my_data->chars[len]=0; | ~~~~~~~~~~~~~~~~~~^ /build/reproducible-path/libgff-2.0.0/include/GStr.h: In member function 'GStr GStr::operator+(double) const': /build/reproducible-path/libgff-2.0.0/include/GStr.h:184:21: note: while referencing 'GStr::Data::chars' 184 | char chars[1]; | ^~~~~ [ 81%] Linking CXX static library libgff.a /usr/bin/cmake -P CMakeFiles/gff.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/gff.dir/link.txt --verbose=1 /usr/bin/ar qc libgff.a CMakeFiles/gff.dir/src/codons.cpp.o CMakeFiles/gff.dir/src/GArgs.cpp.o CMakeFiles/gff.dir/src/GBase.cpp.o CMakeFiles/gff.dir/src/gdna.cpp.o CMakeFiles/gff.dir/src/GFaSeqGet.cpp.o CMakeFiles/gff.dir/src/GFastaIndex.cpp.o CMakeFiles/gff.dir/src/gff.cpp.o CMakeFiles/gff.dir/src/GStr.cpp.o /usr/bin/ranlib libgff.a make[3]: Leaving directory '/build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu' [ 81%] Built target gff make -f CMakeFiles/TestGFFParse.dir/build.make CMakeFiles/TestGFFParse.dir/depend make[3]: Entering directory '/build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu' cd /build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libgff-2.0.0 /build/reproducible-path/libgff-2.0.0 /build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu /build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu /build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu/CMakeFiles/TestGFFParse.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu' make -f CMakeFiles/TestGFFParse.dir/build.make CMakeFiles/TestGFFParse.dir/build make[3]: Entering directory '/build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu' [ 90%] Building CXX object CMakeFiles/TestGFFParse.dir/src/TestGFFParse.cpp.o /usr/bin/c++ -I/build/reproducible-path/libgff-2.0.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libgff-2.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -D_FILE_OFFSET_BITS=64 -std=c++14 -MD -MT CMakeFiles/TestGFFParse.dir/src/TestGFFParse.cpp.o -MF CMakeFiles/TestGFFParse.dir/src/TestGFFParse.cpp.o.d -o CMakeFiles/TestGFFParse.dir/src/TestGFFParse.cpp.o -c /build/reproducible-path/libgff-2.0.0/src/TestGFFParse.cpp /build/reproducible-path/libgff-2.0.0/src/TestGFFParse.cpp: In function 'int main(int, char**)': /build/reproducible-path/libgff-2.0.0/src/TestGFFParse.cpp:25:35: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 25 | for (size_t j=0; j < f->attrs->Count(); ++j) { | ~~^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libgff-2.0.0/include/GList.hh:8, from /build/reproducible-path/libgff-2.0.0/include/GFastaIndex.h:12, from /build/reproducible-path/libgff-2.0.0/include/GFaSeqGet.h:3, from /build/reproducible-path/libgff-2.0.0/include/gff.h:9, from /build/reproducible-path/libgff-2.0.0/src/TestGFFParse.cpp:5: /build/reproducible-path/libgff-2.0.0/include/GVec.hh: In instantiation of 'void GVec::setCapacity(int) [with OBJ = GMapSeg]': /build/reproducible-path/libgff-2.0.0/include/GVec.hh:202:3: required from 'GVec::GVec(int) [with OBJ = GMapSeg]' /build/reproducible-path/libgff-2.0.0/include/gff.h:126:50: required from here /build/reproducible-path/libgff-2.0.0/include/GVec.hh:291:15: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class GMapSeg'; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libgff-2.0.0/include/gff.h:69:7: note: 'class GMapSeg' declared here 69 | class GMapSeg:public GSeg { | ^~~~~~~ /build/reproducible-path/libgff-2.0.0/include/GVec.hh: In instantiation of 'void GVec::setCapacity(int) [with OBJ = GSeg]': /build/reproducible-path/libgff-2.0.0/include/GVec.hh:202:3: required from 'GVec::GVec(int) [with OBJ = GSeg]' /build/reproducible-path/libgff-2.0.0/include/gff.h:310:4: required from here /build/reproducible-path/libgff-2.0.0/include/GVec.hh:291:15: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class GSeg'; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/libgff-2.0.0/include/gff.h:6: /build/reproducible-path/libgff-2.0.0/include/GBase.h:308:7: note: 'class GSeg' declared here 308 | class GSeg { | ^~~~ /build/reproducible-path/libgff-2.0.0/include/GVec.hh: In instantiation of 'void GVec::setCapacity(int) [with OBJ = GeneCDS]': /build/reproducible-path/libgff-2.0.0/include/GVec.hh:202:3: required from 'GVec::GVec(int) [with OBJ = GeneCDS]' /build/reproducible-path/libgff-2.0.0/include/gff.h:1349:17: required from here /build/reproducible-path/libgff-2.0.0/include/GVec.hh:291:15: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class GeneCDS'; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libgff-2.0.0/include/gff.h:1338:7: note: 'class GeneCDS' declared here 1338 | class GeneCDS: public GSeg { | ^~~~~~~ /build/reproducible-path/libgff-2.0.0/include/GVec.hh: In instantiation of 'void GVec::setCapacity(int) [with OBJ = GSegMatch]': /build/reproducible-path/libgff-2.0.0/include/GVec.hh:202:3: required from 'GVec::GVec(int) [with OBJ = GSegMatch]' /build/reproducible-path/libgff-2.0.0/include/GList.hh:191:76: required from 'GArray::GArray(int (*)(pointer, pointer)) [with OBJ = GSegMatch; GCompareProc = int(void*, void*)]' /build/reproducible-path/libgff-2.0.0/include/gff.h:1349:27: required from here /build/reproducible-path/libgff-2.0.0/include/GVec.hh:291:15: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class GSegMatch'; use assignment or value-initialization instead [-Wclass-memaccess] 291 | memset(fArray+fCount, 0, (NewCapacity-fCount)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libgff-2.0.0/include/gff.h:1326:7: note: 'class GSegMatch' declared here 1326 | class GSegMatch { //keep track of "matching" overlaps of a GeneCDSChain with multiple GeneSegment containers | ^~~~~~~~~ /build/reproducible-path/libgff-2.0.0/include/GVec.hh: In instantiation of 'void GVec::Grow(int, OBJ&) [with OBJ = GSegMatch]': /build/reproducible-path/libgff-2.0.0/include/GVec.hh:437:9: required from 'void GVec::Insert(int, OBJ*) [with OBJ = GSegMatch]' /build/reproducible-path/libgff-2.0.0/include/GVec.hh:69:44: required from 'void GVec::Insert(int, OBJ) [with OBJ = GSegMatch]' /build/reproducible-path/libgff-2.0.0/include/GList.hh:234:21: required from 'int GArray::Add(OBJ*) [with OBJ = GSegMatch]' /build/reproducible-path/libgff-2.0.0/include/GList.hh:51:36: required from 'int GArray::Add(OBJ&) [with OBJ = GSegMatch]' /build/reproducible-path/libgff-2.0.0/include/gff.h:1362:13: required from here /build/reproducible-path/libgff-2.0.0/include/GVec.hh:358:15: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'class GSegMatch'; use assignment or value-initialization instead [-Wclass-memaccess] 358 | memset(&newList[fCount+1], 0, (NewCapacity-fCount-1)*sizeof(OBJ)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libgff-2.0.0/include/gff.h:1326:7: note: 'class GSegMatch' declared here 1326 | class GSegMatch { //keep track of "matching" overlaps of a GeneCDSChain with multiple GeneSegment containers | ^~~~~~~~~ [100%] Linking CXX executable TestGFFParse /usr/bin/cmake -E cmake_link_script CMakeFiles/TestGFFParse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libgff-2.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Wall -D_FILE_OFFSET_BITS=64 -Wl,-z,relro CMakeFiles/TestGFFParse.dir/src/TestGFFParse.cpp.o -o TestGFFParse libgff.a make[3]: Leaving directory '/build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu' [100%] Built target TestGFFParse make[2]: Leaving directory '/build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libgff-dev/ cd obj-i686-linux-gnu && make -j8 install DESTDIR=/build/reproducible-path/libgff-2.0.0/debian/libgff-dev AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libgff-2.0.0 -B/build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/libgff-2.0.0/debian/libgff-dev/usr/lib/libgff/cmake/libgffConfig.cmake -- Installing: /build/reproducible-path/libgff-2.0.0/debian/libgff-dev/usr/lib/libgff/cmake/libgffConfigVersion.cmake -- Installing: /build/reproducible-path/libgff-2.0.0/debian/libgff-dev/usr/lib/libgff.a -- Installing: /build/reproducible-path/libgff-2.0.0/debian/libgff-dev/usr/include -- Installing: /build/reproducible-path/libgff-2.0.0/debian/libgff-dev/usr/include/GList.hh -- Installing: /build/reproducible-path/libgff-2.0.0/debian/libgff-dev/usr/include/GBase.h -- Installing: /build/reproducible-path/libgff-2.0.0/debian/libgff-dev/usr/include/GArgs.h -- Installing: /build/reproducible-path/libgff-2.0.0/debian/libgff-dev/usr/include/gff.h -- Installing: /build/reproducible-path/libgff-2.0.0/debian/libgff-dev/usr/include/codons.h -- Installing: /build/reproducible-path/libgff-2.0.0/debian/libgff-dev/usr/include/gdna.h -- Installing: /build/reproducible-path/libgff-2.0.0/debian/libgff-dev/usr/include/GStr.h -- Installing: /build/reproducible-path/libgff-2.0.0/debian/libgff-dev/usr/include/GFastaIndex.h -- Installing: /build/reproducible-path/libgff-2.0.0/debian/libgff-dev/usr/include/GHash.hh -- Installing: /build/reproducible-path/libgff-2.0.0/debian/libgff-dev/usr/include/GVec.hh -- Installing: /build/reproducible-path/libgff-2.0.0/debian/libgff-dev/usr/include/GFaSeqGet.h make[1]: Leaving directory '/build/reproducible-path/libgff-2.0.0/obj-i686-linux-gnu' dh_installdocs dh_installchangelogs dh_installexamples dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/libgff-2.0.0' dh_fixperms find debian -name '*.gtf' | xargs chmod -x make[1]: Leaving directory '/build/reproducible-path/libgff-2.0.0' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libgff-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'libgff-dev' in '../libgff-dev_2.0.0-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../libgff_2.0.0-3_i386.buildinfo dpkg-genchanges --build=binary -O../libgff_2.0.0-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/48366 and its subdirectories I: Current time: Thu Apr 11 05:23:10 -12 2024 I: pbuilder-time-stamp: 1712856190 Thu Apr 11 17:23:13 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Thu Apr 11 17:23:13 UTC 2024 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Thu Apr 11 17:23:53 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. Thu Apr 11 17:23:53 UTC 2024 I: libgff_2.0.0-3_i386.changes: Format: 1.8 Date: Fri, 21 Jan 2022 16:14:04 +0100 Source: libgff Binary: libgff-dev Architecture: i386 Version: 2.0.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libgff-dev - GFF/GTF parsing from cufflinks as a library Changes: libgff (2.0.0-3) unstable; urgency=medium . * Team upload. * Really fix watch file * Add missing build dependency on dh addon. Checksums-Sha1: fdeca40af55ebcd650e2ff1a50256d271b1d2478 162244 libgff-dev_2.0.0-3_i386.deb 4bc831a6a9fe27da967a72d08524bc86523185e7 5851 libgff_2.0.0-3_i386.buildinfo Checksums-Sha256: 00f09aca6401ed303ce543e6e2abe3263c9149a814c83013433fd962e35a2f1d 162244 libgff-dev_2.0.0-3_i386.deb acb705abdbedcd1e288cef770120b2efd1888a76b3d12f23ef0ece714b0b118c 5851 libgff_2.0.0-3_i386.buildinfo Files: da5fb47443dd714fe47e1762550209bb 162244 libdevel optional libgff-dev_2.0.0-3_i386.deb 89fe8fcb65bb24ea92cae1ee7fe8292e 5851 libdevel optional libgff_2.0.0-3_i386.buildinfo Thu Apr 11 17:23:55 UTC 2024 I: diffoscope 263 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_3-20464.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.gn6jYsZH/libgff_2.0.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.gn6jYsZH/libgff_2.0.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.gn6jYsZH/libgff_2.0.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.gn6jYsZH/b1/libgff_2.0.0-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.gn6jYsZH/b2/libgff_2.0.0-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.354s) 0.354s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.017s) 0.017s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 703ms CPU time consumed: 703ms Thu Apr 11 17:23:56 UTC 2024 I: diffoscope 263 found no differences in the changes files, and a .buildinfo file also exists. Thu Apr 11 17:23:56 UTC 2024 I: libgff from trixie built successfully and reproducibly on i386. Thu Apr 11 17:23:57 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Apr 11 17:23:57 UTC 2024 I: Submitting 8.0K b1/libgff_2.0.0-3_i386.buildinfo.asc Thu Apr 11 17:23:58 UTC 2024 I: Submitting 8.0K b2/libgff_2.0.0-3_i386.buildinfo.asc Thu Apr 11 17:23:59 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Apr 11 17:23:59 UTC 2024 I: Done submitting .buildinfo files. Thu Apr 11 17:23:59 UTC 2024 I: Removing signed libgff_2.0.0-3_i386.buildinfo.asc files: removed './b1/libgff_2.0.0-3_i386.buildinfo.asc' removed './b2/libgff_2.0.0-3_i386.buildinfo.asc'