Tue Oct 22 08:54:58 UTC 2024 I: starting to build ivar/trixie/i386 on jenkins on '2024-10-22 08:54' Tue Oct 22 08:54:58 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_2/41237/console.log Tue Oct 22 08:54:58 UTC 2024 I: Downloading source for trixie/ivar=1.4.3+dfsg-2 --2024-10-22 08:54:58-- http://deb.debian.org/debian/pool/main/i/ivar/ivar_1.4.3%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2205 (2.2K) [text/prs.lines.tag] Saving to: ‘ivar_1.4.3+dfsg-2.dsc’ 0K .. 100% 274M=0s 2024-10-22 08:54:58 (274 MB/s) - ‘ivar_1.4.3+dfsg-2.dsc’ saved [2205/2205] Tue Oct 22 08:54:58 UTC 2024 I: ivar_1.4.3+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ivar Binary: ivar, ivar-doc Architecture: any all Version: 1.4.3+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/andersen-lab/ivar Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/ivar Vcs-Git: https://salsa.debian.org/med-team/ivar.git Testsuite: autopkgtest Testsuite-Triggers: samtools Build-Depends: debhelper-compat (= 13), libhts-dev Package-List: ivar deb science optional arch=any ivar-doc deb doc optional arch=all Checksums-Sha1: b3321b88507ca2939854142a4b8a211b8f718ff3 674816 ivar_1.4.3+dfsg.orig.tar.xz a0301ce9286b8b5063a5b90de79c015c4e171d51 46396 ivar_1.4.3+dfsg-2.debian.tar.xz Checksums-Sha256: 262c15f5135207598785d3eb29698d4a0534c029408c917d18efb1ebc167d41f 674816 ivar_1.4.3+dfsg.orig.tar.xz 6b534b45e30e06667f6b1922934cc6aa588535d871a20336c0e42d7868d4b718 46396 ivar_1.4.3+dfsg-2.debian.tar.xz Files: bb436c8709f7f188433296aef15b41ee 674816 ivar_1.4.3+dfsg.orig.tar.xz 388f2a5bd860349586e3513d912ac57d 46396 ivar_1.4.3+dfsg-2.debian.tar.xz Dgit: 1a804969f3ffe3f2a3f77987f498d009f8fcf8a3 debian archive/debian/1.4.3+dfsg-2 https://git.dgit.debian.org/ivar -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmaToY0UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrFQg//foNli4YAPSpaLzp5yRutpsW9/1sa rKCDhji+0yxMs3OdL9jLCWRK7KMCFNcRwXQp+SDAJtL0YWbXBLZPo5KmxV7AUTAX a/IgPYEZO67shNRGArIT9N2HK5qKtfbd+Un93iQTX44vIesmQEFUQ1hVzc8RYX8K 3niriU9Yv+Rnh5cFZ3B53L7Zr19bjGerLokrCZEKD5Y4ApyIa5wt848QNxSEaMvH /cbjydcrDCyhbcBJD5hdHxxABknpwJOsQc1uzoJcqmdsOkVwkahZz2ZQ/jpISsMp NN6A7HEPgmfoY01oyP4QS0OTNvgnsGCaZwpiVWkesUiaOepAuIK/jgrdly1IDiOg yF1Xfz3Ecm6EgXmBh7fWSH9IjJ9Wk9rc3HiqCrxDgFtilMSGA/RQ2WAFJoptFhmS OM557zcdNLGCb4ydlRsMT6q3nA2okK0UDxqbGH0ROwrpV8QpJjHvBKwXmPHi2wrF sTM3iET17owz83z5qX9vqx1tuJUhpdxw5Av/pYafIZDCozTid2QONmevoti6ZRFC R6o/LFoF+DPo1gZk5pD7H0ruZwCpa+pqx5ruDn96sxvXIqCI4InHKdJ7dgGjFjSE 0vFV4FVsFS5QIe4dhv9B6q/eih5NgESLKKKHpl6j9yZHFu662MKH3c9SLbTZb5wW 7g/VpG4zTUtKot8= =WWVS -----END PGP SIGNATURE----- Tue Oct 22 08:54:58 UTC 2024 I: Checking whether the package is not for us Tue Oct 22 08:54:58 UTC 2024 I: Starting 1st build on remote node ionos6-i386.debian.net. Tue Oct 22 08:54:58 UTC 2024 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Tue Oct 22 08:57:41 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Nov 24 03:18:24 -12 2025 I: pbuilder-time-stamp: 1763997504 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [ivar_1.4.3+dfsg-2.dsc] I: copying [./ivar_1.4.3+dfsg.orig.tar.xz] I: copying [./ivar_1.4.3+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Jul 14 09:59:41 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ivar_1.4.3+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting ivar in ivar-1.4.3+dfsg dpkg-source: info: unpacking ivar_1.4.3+dfsg.orig.tar.xz dpkg-source: info: unpacking ivar_1.4.3+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Fix-warning.patch dpkg-source: info: applying forward-build-options.patch dpkg-source: info: applying privacy-breach.patch dpkg-source: info: applying gcc-13.patch dpkg-source: info: applying gcc-13-2.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/10636/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='7879a4bad9e842d381e92926b2027f01' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='10636' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.sz27CSCl/pbuilderrc_wW6I --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.sz27CSCl/b1 --logfile b1/build.log ivar_1.4.3+dfsg-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/10636/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libhts-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19786 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 37.0 MB of archives. After unpacking 125 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3 [42.9 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-9 [102 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-2 [194 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5 [9550 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.1 [733 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b4 [309 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libbrotli-dev i386 1.1.0-2+b4 [313 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.1-1 [23.1 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get: 36 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3 [200 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.63.0-1 [82.7 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libnghttp3-9 i386 1.4.0-1 [74.3 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libngtcp2-16 i386 1.6.0-1 [154 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libngtcp2-crypto-gnutls8 i386 1.6.0-1 [20.2 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 libcurl3t64-gnutls i386 8.10.1-2 [400 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 libevent-2.1-7t64 i386 2.1.12-stable-10 [194 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libunbound8 i386 1.22.0-1 [632 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 libgnutls-dane0t64 i386 3.8.6-2 [439 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libgnutls-openssl27t64 i386 3.8.6-2 [439 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 libidn2-dev i386 2.3.7-2 [125 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 libp11-kit-dev i386 0.25.5-2 [208 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libtasn1-6-dev i386 4.19.0-3+b2 [101 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libgmpxx4ldbl i386 2:6.3.0+dfsg-2+b1 [330 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libgmp-dev i386 2:6.3.0+dfsg-2+b1 [659 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 nettle-dev i386 3.10-1 [1333 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libgnutls28-dev i386 3.8.6-2 [1444 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libpkgconf3 i386 1.8.1-3 [38.2 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 pkgconf-bin i386 1.8.1-3 [30.3 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 pkgconf i386 1.8.1-3 [26.1 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libnghttp2-dev i386 1.63.0-1 [123 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libnghttp3-dev i386 1.4.0-1 [99.2 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libngtcp2-crypto-gnutls-dev i386 1.6.0-1 [24.7 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libngtcp2-dev i386 1.6.0-1 [206 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libpsl-dev i386 0.21.2-1.1 [78.2 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1 [915 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 librtmp-dev i386 2.4+20151223.gitfa8646d.1-2+b4 [72.1 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libssl-dev i386 3.3.2-1 [2790 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 libssh2-1-dev i386 1.11.1-1 [407 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 libzstd-dev i386 1.5.6+dfsg-1 [352 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libcurl4-gnutls-dev i386 8.10.1-2 [531 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.22-1 [48.1 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 libdeflate-dev i386 1.22-1 [57.2 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 libhtscodecs2 i386 1.6.1-1 [70.8 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 libhts3t64 i386 1.20+ds-1 [495 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 liblzma-dev i386 5.6.2-2 [312 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 libhts-dev i386 1.20+ds-1 [1675 kB] Fetched 37.0 MB in 0s (85.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19786 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-9_i386.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... 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Unpacking libhts-dev:i386 (1.20+ds-1) ... Setting up libhtscodecs2:i386 (1.6.1-1) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libgnutls-openssl27t64:i386 (3.8.6-2) ... Setting up libkeyutils1:i386 (1.6.3-3) ... Setting up libicu72:i386 (72.1-5) ... Setting up libzstd-dev:i386 (1.5.6+dfsg-1) ... Setting up bsdextrautils (2.40.2-9) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:i386 (1.1.0-2+b4) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up libpsl5t64:i386 (0.21.2-1.1) ... Setting up libnghttp2-14:i386 (1.63.0-1) ... Setting up libdeflate0:i386 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libevent-2.1-7t64:i386 (2.1.12-stable-10) ... Setting up libcom-err2:i386 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:i386 (0.191-2) ... Setting up libpsl-dev:i386 (0.21.2-1.1) ... Setting up libkrb5support0:i386 (1.21.3-3) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ... Setting up autotools-dev (20220109.1) ... Setting up libunbound8:i386 (1.22.0-1) ... Setting up libpkgconf3:i386 (1.8.1-3) ... Setting up libgmpxx4ldbl:i386 (2:6.3.0+dfsg-2+b1) ... Setting up libgnutls-dane0t64:i386 (3.8.6-2) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libssl-dev:i386 (3.3.2-1) ... Setting up autopoint (0.22.5-2) ... Setting up pkgconf-bin (1.8.1-3) ... Setting up libk5crypto3:i386 (1.21.3-3) ... Setting up libidn2-dev:i386 (2.3.7-2) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:i386 (1.4.0-1) ... Setting up libnghttp3-dev:i386 (1.4.0-1) ... Setting up liblzma-dev:i386 (5.6.2-2) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up libngtcp2-16:i386 (1.6.0-1) ... Setting up libkrb5-3:i386 (1.21.3-3) ... Setting up libssh2-1t64:i386 (1.11.1-1) ... Setting up libtasn1-6-dev:i386 (4.19.0-3+b2) ... Setting up libdeflate-dev:i386 (1.22-1) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up libbrotli-dev:i386 (1.1.0-2+b4) ... Setting up libngtcp2-crypto-gnutls8:i386 (1.6.0-1) ... Setting up libp11-kit-dev:i386 (0.25.5-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libgmp-dev:i386 (2:6.3.0+dfsg-2+b1) ... Setting up nettle-dev:i386 (3.10-1) ... Setting up libtool (2.4.7-7) ... Setting up libngtcp2-crypto-gnutls-dev:i386 (1.6.0-1) ... Setting up libngtcp2-dev:i386 (1.6.0-1) ... Setting up libldap-2.5-0:i386 (2.5.18+dfsg-3) ... Setting up pkgconf:i386 (1.8.1-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libssh2-1-dev:i386 (1.11.1-1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libgnutls28-dev:i386 (3.8.6-2) ... Setting up libnghttp2-dev:i386 (1.63.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3t64-gnutls:i386 (8.10.1-2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp-dev:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libhts3t64:i386 (1.20+ds-1) ... Setting up debhelper (13.20) ... Setting up libcurl4-gnutls-dev:i386 (8.10.1-2) ... Setting up libhts-dev:i386 (1.20+ds-1) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ivar-1.4.3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ivar_1.4.3+dfsg-2_source.changes dpkg-buildpackage: info: source package ivar dpkg-buildpackage: info: source version 1.4.3+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:12: installing './compile' configure.ac:58: installing './config.guess' configure.ac:58: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gawk... (cached) mawk checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for main in -lhts... no checking for main in -lpthread... no checking for main in -lz... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking for _Bool... yes checking for stdbool.h that conforms to C99 or later... yes checking for inline... inline checking for int16_t... yes checking for int32_t... yes checking for int8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint8_t... yes checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for GNU libc compatible malloc... no checking for GNU libc compatible realloc... no checking for memmove... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build make -j22 make[1]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg' make all-recursive make[2]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg' Making all in src make[3]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o ivar.o ivar.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o call_consensus_pileup.o call_consensus_pileup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o alignment.o alignment.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o suffix_tree.o suffix_tree.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o trim_primer_quality.o trim_primer_quality.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o remove_reads_from_amplicon.o remove_reads_from_amplicon.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o call_variants.o call_variants.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o primer_bed.o primer_bed.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o allele_functions.o allele_functions.cpp Using built-in specs. Using built-in specs. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o get_masked_amplicons.o get_masked_amplicons.cpp COLLECT_GCC=g++ Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-6' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-6) COLLECT_GCC=g++ Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-6' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-6) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=generic' '-march=i686' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-mapUsing built-in specs. =/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=generic' '-march=i686' /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -D_GNU_SOURCE -quiet -D -v -I HAVE_CONFIG_H . -D -I _FORTIFY_SOURCE=2 .. -imultiarch call_consensus_pileup.cpp i386-linux-gnu -quiet -D_GNU_SOURCE -D -dumpbase HAVE_CONFIG_H call_consensus_pileup.cpp -D _FORTIFY_SOURCE=2 -dumpbase-ext ivar.cpp .cpp -quiet -mtune=generic -dumpbase ivar.cpp -march=i686 -dumpbase-ext -g .cpp -mtune=generic -g -march=i686 -O2 -g -g -Wdate-timeg++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o get_common_variants.o get_common_variants.cpp -O2 -Wformat=1Using built-in specs. -Wdate-time -Werror=format-security -Wformat=1 -Wall -Werror=format-security -Wextra -Wall -Wextra -Werror -Werror -version -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -fstack-protector-strong -ffloat-store -ffloat-store -fasynchronous-unwind-tables -fasynchronous-unwind-tables -o -o /tmp/ccNdam3X.s /tmp/cciFdGCO.s COLLECT_GCC=g++ COLLECT_GCC=g++ Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-6' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext -Target: i686-linux-gnu -enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-veriConfigured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-6' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs fy --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto ----enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx--program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext -32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-li-enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-lnux-gnu ibstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-veriThread model: posix fy --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mxSupported LTO compression algorithms: zlib32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-li zstdnux-gnu Thread model: posix gcc version 14.2.0 (Debian 14.2.0-6) Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-6) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -DCOLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map HAVE_CONFIG_H=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' ' -D-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mtune=generic' '-march=i686' _FORTIFY_SOURCE=2 suffix_tree.cpp -quiet -dumpbase suffix_tree.cpp -dumpbase-extg++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o parse_gff.o parse_gff.cpp .cpp -mtune=generic -march=i686 -g -g -O2 /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -Wdate-time -quiet -Wformat=1 -v -Werror=format-security -I -Wall . -Wextra -I -Werror .. -version -imultiarch -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. i386-linux-gnu -fstack-protector-strong -D_GNU_SOURCE -ffloat-store -D -fasynchronous-unwind-tables HAVE_CONFIG_H -o -D /tmp/ccRr7nTD.s _FORTIFY_SOURCE=2 alignment.cpp -quiet -dumpbase alignment.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccJfyOuv.s Using built-in specs. Using built-in specs. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o ref_seq.o ref_seq.cpp COLLECT_GCC=g++ Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-6' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-6) COLLECT_GCC=g++ Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-6' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-6) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mtune=generic' '-march=i686' /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2Using built-in specs. remove_reads_from_amplicon.cpp -quiet -dumpbase remove_reads_from_amplicon.cpp -dumpbase-ext .cpp -mtune=generic -march=i686COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map -g -g=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' ' -O2-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mtune=generic' '-march=i686' -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/cco1qx2I.s /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 trim_primer_quality.cpp -quiet -dumpbase trim_primer_quality.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/cccXAsRQ.s g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -c -o interval_tree.o interval_tree.cpp COLLECT_GCC=g++ Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-6' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-6) Using built-in specs. 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'-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' /usr/libexec/gcc/i686-linux-gnu/14/cc1plus -quiet -v -I . -I .. -imultiarch i386-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 interval_tree.cpp -quiet -dumpbase interval_tree.cpp -dumpbase-ext .cpp -mtune=generic -march=i686 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-securityGNU C++17 (Debian 14.2.0-6) version 14.2.0 (i686-linux-gnu) compiled by GNU C version 14.2.0, -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -ffloat-store -fasynchronous-unwind-tables -o /tmp/ccN4kMqE.s GNU C++17 (Debian 14.2.0-6) version 14.2.0 (i686-linux-gnu) compiled by GNU C version 14.2.0, GNU C++17 (Debian 14.2.0-6) version 14.2.0 (i686-linux-gnu) compiled by GNU C version 14.2.0, GNU C++17 (Debian 14.2.0-6) version 14.2.0 (i686-linux-gnu) compiled by GNU C version 14.2.0, GNU C++17 (Debian 14.2.0-6) version 14.2.0 (i686-linux-gnu) compiled by GNU C version 14.2.0, GNU C++17 (Debian 14.2.0-6) version 14.2.0 (i686-linux-gnu) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GNU C++17 (Debian 14.2.0-6) version 14.2.0 (i686-linux-gnu) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GNU C++17 (Debian 14.2.0-6) version 14.2.0 (i686-linux-gnu) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/../../../../i686-linux-gnu/include" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/../../../../i686-linux-gnu/include" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" #include "..." search starts here: #include <...> search starts here: ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/../../../../i686-linux-gnu/include" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" . #include "..." search starts here: .. #include <...> search starts here: ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/../../../../i686-linux-gnu/include" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/../../../../i686-linux-gnu/include" /usr/include/c++/14 . ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" #include "..." search starts here: .. /usr/include/i386-linux-gnu/c++/14 ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" #include <...> search starts here: /usr/include/c++/14 /usr/include/c++/14/backward . /usr/include/i386-linux-gnu/c++/14 /usr/lib/gcc/i686-linux-gnu/14/include .. /usr/include/c++/14 /usr/include/c++/14/backward /usr/local/include /usr/include/i386-linux-gnu/c++/14 /usr/lib/gcc/i686-linux-gnu/14/include /usr/include/i386-linux-gnu ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" /usr/include/c++/14/backward ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" /usr/include /usr/local/include #include "..." search starts here: /usr/lib/gcc/i686-linux-gnu/14/include #include "..." search starts here: End of search list. ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" #include <...> search starts here: #include <...> search starts here: /usr/local/include /usr/include/i386-linux-gnu ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" . . ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/../../../../i686-linux-gnu/include" /usr/include/i386-linux-gnu /usr/include .. .. ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" /usr/include End of search list. /usr/include/c++/14 /usr/include/c++/14 End of search list. ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/../../../../i686-linux-gnu/include" /usr/include/i386-linux-gnu/c++/14 /usr/include/i386-linux-gnu/c++/14 ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" /usr/include/c++/14/backward /usr/include/c++/14/backward /usr/lib/gcc/i686-linux-gnu/14/include /usr/lib/gcc/i686-linux-gnu/14/include /usr/local/include /usr/local/include ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/../../../../i686-linux-gnu/include" #include "..." search starts here: /usr/include/i386-linux-gnu /usr/include/i386-linux-gnu #include <...> search starts here: /usr/include /usr/include . End of search list. End of search list. .. #include "..." search starts here: /usr/include/c++/14 #include <...> search starts here: /usr/include/i386-linux-gnu/c++/14 . /usr/include/c++/14/backward #include "..." search starts here: .. /usr/lib/gcc/i686-linux-gnu/14/include #include <...> search starts here: /usr/include/c++/14 /usr/local/include . /usr/include/i386-linux-gnu/c++/14 /usr/include/i386-linux-gnu .. /usr/include /usr/include/c++/14/backward /usr/include/c++/14 End of search list. /usr/lib/gcc/i686-linux-gnu/14/include /usr/include/i386-linux-gnu/c++/14 /usr/local/include /usr/include/c++/14/backward /usr/include/i386-linux-gnu /usr/lib/gcc/i686-linux-gnu/14/include /usr/include /usr/local/include /usr/include/i386-linux-gnu End of search list. /usr/include End of search list. GNU C++17 (Debian 14.2.0-6) version 14.2.0 (i686-linux-gnu) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" GNU C++17 (Debian 14.2.0-6) version 14.2.0 (i686-linux-gnu) compiled by GNU C version 14.2.0, ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/../../../../i686-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/14 /usr/include/i386-linux-gnu/c++/14 /usr/include/c++/14/backward /usr/lib/gcc/i686-linux-gnu/14/include /usr/local/include /usr/include/i386-linux-gnu /usr/include End of search list. GNU C++17 (Debian 14.2.0-6) version 14.2.0 (i686-linux-gnu) compiled by GNU C version 14.2.0, ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/../../../../i686-linux-gnu/include" #include "..." search starts here: GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 #include <...> search starts here: . .. /usr/include/c++/14 /usr/include/i386-linux-gnu/c++/14 /usr/include/c++/14/backward /usr/lib/gcc/i686-linux-gnu/14/include /usr/local/include /usr/include/i386-linux-gnu /usr/include End of search list. ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/../../../../i686-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/14 /usr/include/i386-linux-gnu/c++/14 /usr/include/c++/14/backward /usr/lib/gcc/i686-linux-gnu/14/include /usr/local/include /usr/include/i386-linux-gnu /usr/include End of search list. ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/../../../../i686-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/14 /usr/include/i386-linux-gnu/c++/14 /usr/include/c++/14/backward /usr/lib/gcc/i686-linux-gnu/14/include /usr/local/include /usr/include/i386-linux-gnu /usr/include End of search list. GNU C++17 (Debian 14.2.0-6) version 14.2.0 (i686-linux-gnu) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/../../../../i686-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/14 /usr/include/i386-linux-gnu/c++/14 /usr/include/c++/14/backward /usr/lib/gcc/i686-linux-gnu/14/include /usr/local/include /usr/include/i386-linux-gnu /usr/include End of search list. GNU C++17 (Debian 14.2.0-6) version 14.2.0 (i686-linux-gnu) compiled by GNU C version 14.2.0, GMP version 6.3.0, MPFR version 4.2.1, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/i386-linux-gnu/c++/14" ignoring nonexistent directory "/usr/local/include/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed/i386-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/14/../../../../i686-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/14 /usr/include/i386-linux-gnu/c++/14 /usr/include/c++/14/backward /usr/lib/gcc/i686-linux-gnu/14/include /usr/local/include /usr/include/i386-linux-gnu /usr/include End of search list. Compiler executable checksum: 0dc5c2792cb20f1f8062a78a0f153659 Compiler executable checksum: 0dc5c2792cb20f1f8062a78a0f153659 Compiler executable checksum: 0dc5c2792cb20f1f8062a78a0f153659 Compiler executable checksum: 0dc5c2792cb20f1f8062a78a0f153659 Compiler executable checksum: 0dc5c2792cb20f1f8062a78a0f153659 Compiler executable checksum: Compiler executable checksum: 0dc5c2792cb20f1f80620da7c58ac2Compiler executable checksum: 0f791536592cb20f1f800d62a7c58ac20f79 152c36Compiler executable checksum: b2590f1f 8062a78a0d0f15c53659c2Compiler executable checksum: 79 2cb20f1f80620da7c58ac20f79Compiler executable checksum: 152cb2360f591f80620da7 8ac50fc21579362c59b20f1f8062 a78a0f153659 Compiler executable checksum: 0dc5c2792cb20f1f8062a78a0f153659 Compiler executable checksum: 0dc5c2792cb20f1fCompiler executable checksum: 8062a78a0f1536590dc5c2 792cb20f1f8062a78a0f153659 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mtune=generic' '-march=i686' as -v -I . -I .. --gdwarf-5 --32 -o alignment.o /tmp/ccJfyOuv.s GNU assembler version 2.43.1 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.43.1 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' as -v -I . -I .. --gdwarf-5 --32 -o interval_tree.o /tmp/ccN4kMqE.s GNU assembler version 2.43.1 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.43.1 MAKEFLAGS=w -j22 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'alignment.' MAKEFLAGS=w -j22 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'interval_tree.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mtune=generic' '-march=i686' as -v -I . -I .. --gdwarf-5 --32 -o remove_reads_from_amplicon.o /tmp/cco1qx2I.s GNU assembler version 2.43.1 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.43.1 MAKEFLAGS=w -j22 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'remove_reads_from_amplicon.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mtune=generic' '-march=i686' as -v -I . -I .. --gdwarf-5 --32 -o get_masked_amplicons.o /tmp/ccVVEz90.s GNU assembler version 2.43.1 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.43.1 MAKEFLAGS=w -j22 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'get_masked_amplicons.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=i686' as -v -I . -I .. --gdwarf-5 --32 -o ref_seq.o /tmp/ccZPH5Qm.s GNU assembler version 2.43.1 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.43.1 MAKEFLAGS=w -j22 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'ref_seq.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mtune=generic' '-march=i686' as -v -I . -I .. --gdwarf-5 --32 -o call_variants.o /tmp/ccy1Osnt.s GNU assembler version 2.43.1 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.43.1 MAKEFLAGS=w -j22 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'call_variants.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=generic' '-march=i686' as -v -I . -I .. --gdwarf-5 --32 -o get_common_variants.o /tmp/ccKoIpU3.s GNU assembler version 2.43.1 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.43.1 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mtune=generic' '-march=i686' as -v -I . -I .. --gdwarf-5 --32 -o allele_functions.o /tmp/ccBdGxB7.s GNU assembler version 2.43.1 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.43.1 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=generic' '-march=i686' as -v -I . -I .. --gdwarf-5 --32 -o call_consensus_pileup.o /tmp/cciFdGCO.s GNU assembler version 2.43.1 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.43.1 MAKEFLAGS=w -j22 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'get_common_variants.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=generic' '-march=i686' as -v -I . -I .. --gdwarf-5 --32 -o ivar.o /tmp/ccNdam3X.s GNU assembler version 2.43.1 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.43.1 MAKEFLAGS=w -j22 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'allele_functions.' MAKEFLAGS=w -j22 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'ivar.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' as -v -I . -I .. --gdwarf-5 --32 -o suffix_tree.o /tmp/ccRr7nTD.s GNU assembler version 2.43.1 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.43.1 MAKEFLAGS=w -j22 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'call_consensus_pileup.' MAKEFLAGS=w -j22 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'suffix_tree.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=generic' '-march=i686' as -v -I . -I .. --gdwarf-5 --32 -o primer_bed.o /tmp/ccWp7d29.s GNU assembler version 2.43.1 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.43.1 MAKEFLAGS=w -j22 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'primer_bed.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mtune=generic' '-march=i686' as -v -I . -I .. --gdwarf-5 --32 -o trim_primer_quality.o /tmp/cccXAsRQ.s GNU assembler version 2.43.1 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.43.1 MAKEFLAGS=w -j22 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'trim_primer_quality.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mtune=generic' '-march=i686' as -v -I . -I .. --gdwarf-5 --32 -o parse_gff.o /tmp/ccKUKHel.s GNU assembler version 2.43.1 (i686-linux-gnu) using BFD version (GNU Binutils for Debian) 2.43.1 MAKEFLAGS=w -j22 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'parse_gff.' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -Wl,-z,relro -Wl,-z,now -o ivar ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/libexec/gcc/i686-linux-gnu/14/lto-wrapper Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-6' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-6) MAKEFLAGS=w -j22 COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'ivar.' /usr/libexec/gcc/i686-linux-gnu/14/collect2 -plugin /usr/libexec/gcc/i686-linux-gnu/14/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/i686-linux-gnu/14/lto-wrapper -plugin-opt=-fresolution=/tmp/ccSInjRd.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_i386 --hash-style=gnu --as-needed -dynamic-linker /lib/ld-linux.so.2 -pie -o ivar /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/Scrt1.o /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/14/crtbeginS.o -L/usr/lib/gcc/i686-linux-gnu/14 -L/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/14/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/14/../../.. -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/i686-linux-gnu/14/crtendS.o /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'ivar.' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg/src' Making all in tests make[3]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg' make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg' dh_auto_test --no-parallel make -j1 check "TESTSUITEFLAGS=-j1 --verbose" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg' Making check in src make[3]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg/src' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg/src' Making check in tests make[3]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' make check_primer_trim check_trim check_quality_trim check_consensus check_allele_depth check_consensus_threshold check_consensus_min_depth check_consensus_seq_id check_primer_bed check_getmasked check_removereads check_variants check_common_variants check_unpaired_trim check_primer_trim_edge_cases check_isize_trim check_interval_tree check_amplicon_search check_consensus_min_insert_threshold check_quality_trim_unpaired check_strand_variants make[4]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_primer_trim.o test_primer_trim.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/trim_primer_quality.o ../src/trim_primer_quality.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/primer_bed.o ../src/primer_bed.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/interval_tree.o ../src/interval_tree.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_primer_trim test_primer_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_trim.o test_trim.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_trim test_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_quality_trim.o test_quality_trim.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_quality_trim test_quality_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_call_consensus_from_plup.o test_call_consensus_from_plup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/call_consensus_pileup.o ../src/call_consensus_pileup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/allele_functions.o ../src/allele_functions.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_consensus test_call_consensus_from_plup.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_allele_depth.o test_allele_depth.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_allele_depth test_allele_depth.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_consensus_threshold.o test_consensus_threshold.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_consensus_threshold test_consensus_threshold.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_consensus_min_depth.o test_consensus_min_depth.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_consensus_min_depth test_consensus_min_depth.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_consensus_seq_id.o test_consensus_seq_id.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_consensus_seq_id test_consensus_seq_id.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_primer_bed.o test_primer_bed.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_primer_bed test_primer_bed.o ../src/primer_bed.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_getmasked.o test_getmasked.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/get_masked_amplicons.o ../src/get_masked_amplicons.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_getmasked test_getmasked.o ../src/get_masked_amplicons.o ../src/primer_bed.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_removereads.o test_removereads.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/remove_reads_from_amplicon.o ../src/remove_reads_from_amplicon.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_removereads test_removereads.o ../src/remove_reads_from_amplicon.o ../src/primer_bed.o ../src/trim_primer_quality.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_variants.o test_variants.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/call_variants.o ../src/call_variants.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/parse_gff.o ../src/parse_gff.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/ref_seq.o ../src/ref_seq.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_variants test_variants.o ../src/call_variants.o ../src/allele_functions.o ../src/parse_gff.o ../src/ref_seq.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_common_variants.o test_common_variants.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/get_common_variants.o ../src/get_common_variants.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_common_variants test_common_variants.o ../src/get_common_variants.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_unpaired_trim.o test_unpaired_trim.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_unpaired_trim test_unpaired_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_primer_trim_edge_cases.o test_primer_trim_edge_cases.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_primer_trim_edge_cases test_primer_trim_edge_cases.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_isize_trim.o test_isize_trim.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_isize_trim test_isize_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_interval_tree.o test_interval_tree.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_interval_tree test_interval_tree.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_amplicon_search.o test_amplicon_search.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_amplicon_search test_amplicon_search.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_consensus_min_insert_threshold.o test_consensus_min_insert_threshold.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_consensus_min_insert_threshold test_consensus_min_insert_threshold.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_quality_trim_unpaired.o test_quality_trim_unpaired.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_quality_trim_unpaired test_quality_trim_unpaired.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_variants_reverse_strand.o test_variants_reverse_strand.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_strand_variants test_variants_reverse_strand.o ../src/call_variants.o ../src/allele_functions.o ../src/parse_gff.o ../src/ref_seq.o -lhts -lz -lpthread make[4]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' make check-TESTS make[4]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' make[5]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' PASS: check_primer_trim PASS: check_trim PASS: check_quality_trim PASS: check_consensus PASS: check_allele_depth PASS: check_consensus_threshold PASS: check_consensus_min_depth PASS: check_consensus_seq_id PASS: check_primer_bed PASS: check_getmasked PASS: check_removereads PASS: check_variants PASS: check_common_variants PASS: check_unpaired_trim PASS: check_primer_trim_edge_cases PASS: check_isize_trim PASS: check_interval_tree PASS: check_amplicon_search PASS: check_consensus_min_insert_threshold PASS: check_quality_trim_unpaired PASS: check_strand_variants ============================================================================ Testsuite summary for ivar 1.4.3 ============================================================================ # TOTAL: 21 # PASS: 21 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[5]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' make[4]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg' make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j22 install DESTDIR=/build/reproducible-path/ivar-1.4.3\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg' Making install in src make[2]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg/src' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -v -g -Wall -Wextra -Werror -Wl,-z,relro -Wl,-z,now -o ivar ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/libexec/gcc/i686-linux-gnu/14/lto-wrapper Target: i686-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-6' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=i686-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-targets=all --enable-multiarch --disable-werror --with-arch-32=i686 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-6) MAKEFLAGS=w -j22 -- DESTDIR=/build/reproducible-path/ivar-1.4.3+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no COMPILER_PATH=/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/14/:/usr/libexec/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/14/:/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/14/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/14/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'ivar.' /usr/libexec/gcc/i686-linux-gnu/14/collect2 -plugin /usr/libexec/gcc/i686-linux-gnu/14/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/i686-linux-gnu/14/lto-wrapper -plugin-opt=-fresolution=/tmp/ccptMcu5.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_i386 --hash-style=gnu --as-needed -dynamic-linker /lib/ld-linux.so.2 -pie -o ivar /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/Scrt1.o /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/14/crtbeginS.o -L/usr/lib/gcc/i686-linux-gnu/14 -L/usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/14/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/14/../../.. -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/i686-linux-gnu/14/crtendS.o /usr/lib/gcc/i686-linux-gnu/14/../../../i386-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.3+dfsg=.' '-fstack-protector-strong' '-Wformat=1' '-Werror=format-security' '-ffloat-store' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-shared-libgcc' '-mtune=generic' '-march=i686' '-dumpdir' 'ivar.' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg/src' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/ivar-1.4.3+dfsg/debian/tmp/usr/bin' /usr/bin/install -c ivar '/build/reproducible-path/ivar-1.4.3+dfsg/debian/tmp/usr/bin' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg/src' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg/src' Making install in tests make[2]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg/tests' make[2]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg' make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules execute_before_dh_fixperms make[1]: Entering directory '/build/reproducible-path/ivar-1.4.3+dfsg' if [ -x /build/reproducible-path/ivar-1.4.3+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/data/primer_pair_test/test_primer_pair.bed ] \ ; then chmod -v -x /build/reproducible-path/ivar-1.4.3+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed \ ; fi make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.3+dfsg' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'ivar-doc' in '../ivar-doc_1.4.3+dfsg-2_all.deb'. dpkg-deb: building package 'ivar' in '../ivar_1.4.3+dfsg-2_i386.deb'. dpkg-deb: building package 'ivar-dbgsym' in '../ivar-dbgsym_1.4.3+dfsg-2_i386.deb'. dpkg-genbuildinfo --build=binary -O../ivar_1.4.3+dfsg-2_i386.buildinfo dpkg-genchanges --build=binary -O../ivar_1.4.3+dfsg-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/10636 and its subdirectories I: Current time: Mon Nov 24 03:20:31 -12 2025 I: pbuilder-time-stamp: 1763997631 Tue Oct 22 08:57:42 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Tue Oct 22 08:57:42 UTC 2024 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Tue Oct 22 09:00:07 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. Tue Oct 22 09:00:08 UTC 2024 I: ivar_1.4.3+dfsg-2_i386.changes: Format: 1.8 Date: Sun, 14 Jul 2024 11:40:01 +0200 Source: ivar Binary: ivar ivar-dbgsym ivar-doc Architecture: i386 all Version: 1.4.3+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: ivar - functions broadly useful for viral amplicon-based sequencing ivar-doc - functions broadly useful for viral amplicon-based sequencing (doc Changes: ivar (1.4.3+dfsg-2) unstable; urgency=medium . * d/rules: fix arch-all build failure. Checksums-Sha1: f05a3995f5852ac10c829fd9801294179d78ecfb 1679632 ivar-dbgsym_1.4.3+dfsg-2_i386.deb 470f0ead189f8517564682962549a7b7ee3c787e 254752 ivar-doc_1.4.3+dfsg-2_all.deb 1b4c23249035e95242ad476e82dab77b154541e1 6840 ivar_1.4.3+dfsg-2_i386.buildinfo 71f865a9b8e65c43453ad7543d3f776793d5cfd3 242240 ivar_1.4.3+dfsg-2_i386.deb Checksums-Sha256: 6ff2c460b644d143bc13c43e87041fede1d1e1f91d063ea8b59c1f15a558faa2 1679632 ivar-dbgsym_1.4.3+dfsg-2_i386.deb b102da4f0bcb6628b681551a757fb5c8ff03f1b16b4a37fb66cf2cda249775e9 254752 ivar-doc_1.4.3+dfsg-2_all.deb 33cb6f4ea6fd30652fd4b60c6416c1e3978f41363faacf718596a8081c166e4b 6840 ivar_1.4.3+dfsg-2_i386.buildinfo 0382ba824c6653c354f8e7f60bea5835054e4773c1f12627860f54f7f5280c69 242240 ivar_1.4.3+dfsg-2_i386.deb Files: fafd62c3c68ca92fb48659a38bd52141 1679632 debug optional ivar-dbgsym_1.4.3+dfsg-2_i386.deb 09bc80c775a7d040dbf4b03e21a7caf8 254752 doc optional ivar-doc_1.4.3+dfsg-2_all.deb 955085e4e5eefad6a8db82950a648df9 6840 science optional ivar_1.4.3+dfsg-2_i386.buildinfo 3a4618b02c7c6d6dc287ba162f63589e 242240 science optional ivar_1.4.3+dfsg-2_i386.deb Tue Oct 22 09:00:09 UTC 2024 I: diffoscope 281 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_2-41237.service Warning: program compiled against libxml 212 using older 209 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.sz27CSCl/ivar_1.4.3+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.sz27CSCl/ivar_1.4.3+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.sz27CSCl/ivar_1.4.3+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.sz27CSCl/b1/ivar_1.4.3+dfsg-2_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.sz27CSCl/b2/ivar_1.4.3+dfsg-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.422s) 0.422s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.041s) 0.041s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 770ms CPU time consumed: 769ms Tue Oct 22 09:00:11 UTC 2024 I: diffoscope 281 found no differences in the changes files, and a .buildinfo file also exists. Tue Oct 22 09:00:11 UTC 2024 I: ivar from trixie built successfully and reproducibly on i386. Tue Oct 22 09:00:13 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Oct 22 09:00:13 UTC 2024 I: Submitting 8.0K b1/ivar_1.4.3+dfsg-2_i386.buildinfo.asc Tue Oct 22 09:00:14 UTC 2024 I: Submitting 8.0K b2/ivar_1.4.3+dfsg-2_i386.buildinfo.asc Tue Oct 22 09:00:15 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Oct 22 09:00:15 UTC 2024 I: Done submitting .buildinfo files. Tue Oct 22 09:00:15 UTC 2024 I: Removing signed ivar_1.4.3+dfsg-2_i386.buildinfo.asc files: removed './b1/ivar_1.4.3+dfsg-2_i386.buildinfo.asc' removed './b2/ivar_1.4.3+dfsg-2_i386.buildinfo.asc'