Thu Dec  5 10:46:50 UTC 2024  I: starting to build hyphy/trixie/i386 on jenkins on '2024-12-05 10:46'
Thu Dec  5 10:46:50 UTC 2024  I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_1/48775/console.log
Thu Dec  5 10:46:50 UTC 2024  I: Downloading source for trixie/hyphy=2.5.63+dfsg-1
--2024-12-05 10:46:50--  http://deb.debian.org/debian/pool/main/h/hyphy/hyphy_2.5.63%2bdfsg-1.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2420 (2.4K) [text/prs.lines.tag]
Saving to: ‘hyphy_2.5.63+dfsg-1.dsc’

     0K ..                                                    100%  338M=0s

2024-12-05 10:46:50 (338 MB/s) - ‘hyphy_2.5.63+dfsg-1.dsc’ saved [2420/2420]

Thu Dec  5 10:46:50 UTC 2024  I: hyphy_2.5.63+dfsg-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: hyphy
Binary: hyphy-pt, hyphy-mpi, hyphy-common
Architecture: any all
Version: 2.5.63+dfsg-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>, Nilesh Patra <nilesh@debian.org>
Homepage: https://hyphy.org/
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/hyphy
Vcs-Git: https://salsa.debian.org/med-team/hyphy.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), cmake, mpi-default-dev, libcurl4-gnutls-dev | libcurl4-dev, libssl-dev, libsqlite3-dev, pkgconf, libpython3-all-dev, python3-all-dev:any, chrpath
Package-List:
 hyphy-common deb science optional arch=all
 hyphy-mpi deb science optional arch=any
 hyphy-pt deb science optional arch=any
Checksums-Sha1:
 ca9c51d52fadd9e6aafecb9ec2480fb2011d5cd7 2626580 hyphy_2.5.63+dfsg.orig.tar.xz
 71ed09e78052f951006d9738c9ebe1ee7ca0f182 17244 hyphy_2.5.63+dfsg-1.debian.tar.xz
Checksums-Sha256:
 44a4f7c83eb8854454c42a4e6c48b640ab2e1d93b88f55f7e38a34cf6701aa64 2626580 hyphy_2.5.63+dfsg.orig.tar.xz
 05a83c4172d4acef5e9154783c0b5faed04c0f3a8849d223c5efb6640d70cdae 17244 hyphy_2.5.63+dfsg-1.debian.tar.xz
Files:
 b126e5e1a1ec2212eb3986a2bf4d03e1 2626580 hyphy_2.5.63+dfsg.orig.tar.xz
 390b7033ba1bff678009b433f4f36006 17244 hyphy_2.5.63+dfsg-1.debian.tar.xz
Dgit: 1e16be5ba4764d2080f73aa823309fc90e8fd57c debian archive/debian/2.5.63+dfsg-1 https://git.dgit.debian.org/hyphy

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Thu Dec  5 10:46:50 UTC 2024  I: Checking whether the package is not for us
Thu Dec  5 10:46:50 UTC 2024  I: Starting 1st build on remote node ionos2-i386.debian.net.
Thu Dec  5 10:46:50 UTC 2024  I: Preparing to do remote build '1' on ionos2-i386.debian.net.
Thu Dec  5 10:49:06 UTC 2024  I: Deleting $TMPDIR on ionos2-i386.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Wed Dec  4 22:46:52 -12 2024
I: pbuilder-time-stamp: 1733395612
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [hyphy_2.5.63+dfsg-1.dsc]
I: copying [./hyphy_2.5.63+dfsg.orig.tar.xz]
I: copying [./hyphy_2.5.63+dfsg-1.debian.tar.xz]
I: Extracting source
gpgv: Signature made Sun Nov  3 12:19:47 2024 
gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv:                issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./hyphy_2.5.63+dfsg-1.dsc: no acceptable signature found
dpkg-source: info: extracting hyphy in hyphy-2.5.63+dfsg
dpkg-source: info: unpacking hyphy_2.5.63+dfsg.orig.tar.xz
dpkg-source: info: unpacking hyphy_2.5.63+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_sqlite.patch
dpkg-source: info: applying rm_arch_specific_flags.patch
dpkg-source: info: applying set-zlib-after-setting-default-libs.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/36440/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='i386'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 '
  DISTRIBUTION='trixie'
  HOME='/root'
  HOST_ARCH='i386'
  IFS=' 	
  '
  INVOCATION_ID='7645e963e2e542ad97fe5241f39050b9'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  LD_LIBRARY_PATH='/usr/lib/libeatmydata'
  LD_PRELOAD='libeatmydata.so'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='36440'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.SJD6x1S7/pbuilderrc_XD0J --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.SJD6x1S7/b1 --logfile b1/build.log hyphy_2.5.63+dfsg-1.dsc'
  SUDO_GID='112'
  SUDO_UID='107'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://46.16.76.132:3128'
I: uname -a
  Linux ionos2-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/36440/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), cmake, mpi-default-dev, libcurl4-gnutls-dev | libcurl4-dev, libssl-dev, libsqlite3-dev, pkgconf, libpython3-all-dev, python3-all-dev:any, chrpath
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19956 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on cmake; however:
  Package cmake is not installed.
 pbuilder-satisfydepends-dummy depends on mpi-default-dev; however:
  Package mpi-default-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev | libcurl4-dev; however:
  Package libcurl4-gnutls-dev is not installed.
  Package libcurl4-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libssl-dev; however:
  Package libssl-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however:
  Package libsqlite3-dev is not installed.
 pbuilder-satisfydepends-dummy depends on pkgconf; however:
  Package pkgconf is not installed.
 pbuilder-satisfydepends-dummy depends on libpython3-all-dev; however:
  Package libpython3-all-dev is not installed.
 pbuilder-satisfydepends-dummy depends on python3-all-dev:any.
 pbuilder-satisfydepends-dummy depends on chrpath; however:
  Package chrpath is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} chrpath{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} groff-base{a} hwloc-nox{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran-14-dev{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhwloc-dev{a} libhwloc15{a} libicu72{a} libidn2-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libmpich-dev{a} libmpich12{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libnsl2{a} libnuma-dev{a} libnuma1{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libslurm41t64{a} libsqlite3-dev{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunbound8{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mpi-default-dev{a} mpich{a} netbase{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libhwloc-plugins libldap-common libmail-sendmail-perl libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix wget 
0 packages upgraded, 136 newly installed, 0 to remove and 0 not upgraded.
Need to get 88.8 MB of archives. After unpacking 321 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.7-3 [814 kB]
Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB]
Get: 3 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.7-3 [2236 kB]
Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.12.6-1 [26.7 kB]
Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2024b-4 [256 kB]
Get: 8 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB]
Get: 9 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.1-1+b1 [23.4 kB]
Get: 10 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB]
Get: 11 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-4 [9600 B]
Get: 12 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-3 [350 kB]
Get: 13 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB]
Get: 14 http://deb.debian.org/debian trixie/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 15 http://deb.debian.org/debian trixie/main i386 libtirpc3t64 i386 1.3.4+ds-1.3+b1 [90.5 kB]
Get: 16 http://deb.debian.org/debian trixie/main i386 libnsl2 i386 1.3.0-3+b3 [42.7 kB]
Get: 17 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-5 [69.3 kB]
Get: 18 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-5 [173 kB]
Get: 19 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.7-3 [1964 kB]
Get: 20 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.7-3 [671 kB]
Get: 21 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.12.6-1 [9692 B]
Get: 22 http://deb.debian.org/debian trixie/main i386 python3 i386 3.12.6-1 [27.8 kB]
Get: 23 http://deb.debian.org/debian trixie/main i386 libproc2-0 i386 2:4.0.4-6 [65.7 kB]
Get: 24 http://deb.debian.org/debian trixie/main i386 procps i386 2:4.0.4-6 [876 kB]
Get: 25 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB]
Get: 26 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB]
Get: 27 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB]
Get: 28 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB]
Get: 29 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB]
Get: 30 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB]
Get: 31 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-5 [1196 kB]
Get: 32 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-11 [95.6 kB]
Get: 33 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB]
Get: 34 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB]
Get: 35 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB]
Get: 36 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB]
Get: 37 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 38 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB]
Get: 39 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB]
Get: 40 http://deb.debian.org/debian trixie/main i386 chrpath i386 0.18-1 [14.0 kB]
Get: 41 http://deb.debian.org/debian trixie/main i386 cmake-data all 3.30.5-1 [2223 kB]
Get: 42 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5+b1 [9583 kB]
Get: 43 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB]
Get: 44 http://deb.debian.org/debian trixie/main i386 libarchive13t64 i386 3.7.4-1.1 [390 kB]
Get: 45 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB]
Get: 46 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB]
Get: 47 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB]
Get: 48 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3+b1 [200 kB]
Get: 49 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB]
Get: 50 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB]
Get: 51 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB]
Get: 52 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB]
Get: 53 http://deb.debian.org/debian trixie/main i386 libcurl4t64 i386 8.11.0-1 [392 kB]
Get: 54 http://deb.debian.org/debian trixie/main i386 libjsoncpp26 i386 1.9.6-3 [90.0 kB]
Get: 55 http://deb.debian.org/debian trixie/main i386 librhash1 i386 1.4.5-1 [144 kB]
Get: 56 http://deb.debian.org/debian trixie/main i386 libuv1t64 i386 1.48.0-7 [157 kB]
Get: 57 http://deb.debian.org/debian trixie/main i386 cmake i386 3.30.5-1 [12.5 MB]
Get: 58 http://deb.debian.org/debian trixie/main i386 comerr-dev i386 2.1-1.47.1-1+b1 [55.3 kB]
Get: 59 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB]
Get: 60 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-8 [517 kB]
Get: 61 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 62 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 63 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 64 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 65 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB]
Get: 66 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB]
Get: 67 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB]
Get: 68 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 69 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 70 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB]
Get: 71 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14.2.0-8 [735 kB]
Get: 72 http://deb.debian.org/debian trixie/main i386 libgfortran-14-dev i386 14.2.0-8 [800 kB]
Get: 73 http://deb.debian.org/debian trixie/main i386 gfortran-14-i686-linux-gnu i386 14.2.0-8 [12.5 MB]
Get: 74 http://deb.debian.org/debian trixie/main i386 gfortran-14 i386 14.2.0-8 [12.2 kB]
Get: 75 http://deb.debian.org/debian trixie/main i386 libhwloc15 i386 2.11.2-1 [177 kB]
Get: 76 http://deb.debian.org/debian trixie/main i386 hwloc-nox i386 2.11.2-1 [229 kB]
Get: 77 http://deb.debian.org/debian trixie/main i386 libgssrpc4t64 i386 1.21.3-3 [63.1 kB]
Get: 78 http://deb.debian.org/debian trixie/main i386 libkadm5clnt-mit12 i386 1.21.3-3 [43.2 kB]
Get: 79 http://deb.debian.org/debian trixie/main i386 libkdb5-10t64 i386 1.21.3-3 [45.1 kB]
Get: 80 http://deb.debian.org/debian trixie/main i386 libkadm5srv-mit12 i386 1.21.3-3 [57.0 kB]
Get: 81 http://deb.debian.org/debian trixie/main i386 krb5-multidev i386 1.21.3-3 [126 kB]
Get: 82 http://deb.debian.org/debian trixie/main i386 libbrotli-dev i386 1.1.0-2+b6 [313 kB]
Get: 83 http://deb.debian.org/debian trixie/main i386 libnghttp3-9 i386 1.6.0-2 [75.9 kB]
Get: 84 http://deb.debian.org/debian trixie/main i386 libngtcp2-16 i386 1.9.1-1 [151 kB]
Get: 85 http://deb.debian.org/debian trixie/main i386 libngtcp2-crypto-gnutls8 i386 1.9.1-1 [19.1 kB]
Get: 86 http://deb.debian.org/debian trixie/main i386 libcurl3t64-gnutls i386 8.11.0-1 [403 kB]
Get: 87 http://deb.debian.org/debian trixie/main i386 libevent-2.1-7t64 i386 2.1.12-stable-10+b1 [195 kB]
Get: 88 http://deb.debian.org/debian trixie/main i386 libunbound8 i386 1.22.0-1 [632 kB]
Get: 89 http://deb.debian.org/debian trixie/main i386 libgnutls-dane0t64 i386 3.8.8-2 [447 kB]
Get: 90 http://deb.debian.org/debian trixie/main i386 libgnutls-openssl27t64 i386 3.8.8-2 [447 kB]
Get: 91 http://deb.debian.org/debian trixie/main i386 libidn2-dev i386 2.3.7-2+b1 [126 kB]
Get: 92 http://deb.debian.org/debian trixie/main i386 libp11-kit-dev i386 0.25.5-2+b1 [208 kB]
Get: 93 http://deb.debian.org/debian trixie/main i386 libtasn1-6-dev i386 4.19.0-3+b3 [102 kB]
Get: 94 http://deb.debian.org/debian trixie/main i386 libgmpxx4ldbl i386 2:6.3.0+dfsg-2+b2 [330 kB]
Get: 95 http://deb.debian.org/debian trixie/main i386 libgmp-dev i386 2:6.3.0+dfsg-2+b2 [661 kB]
Get: 96 http://deb.debian.org/debian trixie/main i386 nettle-dev i386 3.10-1+b1 [1334 kB]
Get: 97 http://deb.debian.org/debian trixie/main i386 libgnutls28-dev i386 3.8.8-2 [1453 kB]
Get: 98 http://deb.debian.org/debian trixie/main i386 libkrb5-dev i386 1.21.3-3 [15.7 kB]
Get: 99 http://deb.debian.org/debian trixie/main i386 libldap-dev i386 2.5.18+dfsg-3+b1 [324 kB]
Get: 100 http://deb.debian.org/debian trixie/main i386 libpkgconf3 i386 1.8.1-4 [38.4 kB]
Get: 101 http://deb.debian.org/debian trixie/main i386 pkgconf-bin i386 1.8.1-4 [30.6 kB]
Get: 102 http://deb.debian.org/debian trixie/main i386 pkgconf i386 1.8.1-4 [26.2 kB]
Get: 103 http://deb.debian.org/debian trixie/main i386 libnghttp2-dev i386 1.64.0-1 [123 kB]
Get: 104 http://deb.debian.org/debian trixie/main i386 libnghttp3-dev i386 1.6.0-2 [101 kB]
Get: 105 http://deb.debian.org/debian trixie/main i386 libngtcp2-crypto-gnutls-dev i386 1.9.1-1 [24.0 kB]
Get: 106 http://deb.debian.org/debian trixie/main i386 libngtcp2-dev i386 1.9.1-1 [202 kB]
Get: 107 http://deb.debian.org/debian trixie/main i386 libpsl-dev i386 0.21.2-1.1+b1 [78.4 kB]
Get: 108 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB]
Get: 109 http://deb.debian.org/debian trixie/main i386 librtmp-dev i386 2.4+20151223.gitfa8646d.1-2+b5 [72.3 kB]
Get: 110 http://deb.debian.org/debian trixie/main i386 libssl-dev i386 3.3.2-2 [2790 kB]
Get: 111 http://deb.debian.org/debian trixie/main i386 libssh2-1-dev i386 1.11.1-1 [407 kB]
Get: 112 http://deb.debian.org/debian trixie/main i386 libzstd-dev i386 1.5.6+dfsg-1+b1 [355 kB]
Get: 113 http://deb.debian.org/debian trixie/main i386 libcurl4-gnutls-dev i386 8.11.0-1 [533 kB]
Get: 114 http://deb.debian.org/debian trixie/main i386 libexpat1-dev i386 2.6.4-1 [165 kB]
Get: 115 http://deb.debian.org/debian trixie/main i386 libnuma1 i386 2.0.18-1+b1 [23.9 kB]
Get: 116 http://deb.debian.org/debian trixie/main i386 libnuma-dev i386 2.0.18-1+b1 [38.8 kB]
Get: 117 http://deb.debian.org/debian trixie/main i386 libltdl7 i386 2.4.7-8 [395 kB]
Get: 118 http://deb.debian.org/debian trixie/main i386 libltdl-dev i386 2.4.7-8 [167 kB]
Get: 119 http://deb.debian.org/debian trixie/main i386 libhwloc-dev i386 2.11.2-1 [271 kB]
Get: 120 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 121 http://deb.debian.org/debian trixie/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get: 122 http://deb.debian.org/debian trixie/main i386 libjs-sphinxdoc all 7.4.7-4 [158 kB]
Get: 123 http://deb.debian.org/debian trixie/main i386 libmpich12 i386 4.2.0-14 [1518 kB]
Get: 124 http://deb.debian.org/debian trixie/main i386 libslurm41t64 i386 24.05.4-1 [739 kB]
Get: 125 http://deb.debian.org/debian trixie/main i386 mpich i386 4.2.0-14 [235 kB]
Get: 126 http://deb.debian.org/debian trixie/main i386 libmpich-dev i386 4.2.0-14 [2494 kB]
Get: 127 http://deb.debian.org/debian trixie/main i386 libpython3.12t64 i386 3.12.7-3 [2170 kB]
Get: 128 http://deb.debian.org/debian trixie/main i386 libpython3.12-dev i386 3.12.7-3 [5282 kB]
Get: 129 http://deb.debian.org/debian trixie/main i386 libpython3-dev i386 3.12.6-1 [9956 B]
Get: 130 http://deb.debian.org/debian trixie/main i386 libpython3-all-dev i386 3.12.6-1 [1068 B]
Get: 131 http://deb.debian.org/debian trixie/main i386 libsqlite3-dev i386 3.46.1-1 [1193 kB]
Get: 132 http://deb.debian.org/debian trixie/main i386 mpi-default-dev i386 1.17 [3144 B]
Get: 133 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.12.6-1 [1040 B]
Get: 134 http://deb.debian.org/debian trixie/main i386 python3.12-dev i386 3.12.7-3 [505 kB]
Get: 135 http://deb.debian.org/debian trixie/main i386 python3-dev i386 3.12.6-1 [26.1 kB]
Get: 136 http://deb.debian.org/debian trixie/main i386 python3-all-dev i386 3.12.6-1 [1068 B]
Fetched 88.8 MB in 1s (74.0 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libpython3.12-minimal:i386.
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Unpacking libpython3.12-minimal:i386 (3.12.7-3) ...
Selecting previously unselected package libexpat1:i386.
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Unpacking libexpat1:i386 (2.6.4-1) ...
Selecting previously unselected package python3.12-minimal.
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Unpacking python3.12-minimal (3.12.7-3) ...
Setting up libpython3.12-minimal:i386 (3.12.7-3) ...
Setting up libexpat1:i386 (2.6.4-1) ...
Setting up python3.12-minimal (3.12.7-3) ...
Selecting previously unselected package python3-minimal.
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Unpacking python3-minimal (3.12.6-1) ...
Selecting previously unselected package media-types.
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Unpacking media-types (10.1.0) ...
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Unpacking netbase (6.4) ...
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Unpacking tzdata (2024b-4) ...
Selecting previously unselected package libkrb5support0:i386.
Preparing to unpack .../04-libkrb5support0_1.21.3-3_i386.deb ...
Unpacking libkrb5support0:i386 (1.21.3-3) ...
Selecting previously unselected package libcom-err2:i386.
Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_i386.deb ...
Unpacking libcom-err2:i386 (1.47.1-1+b1) ...
Selecting previously unselected package libk5crypto3:i386.
Preparing to unpack .../06-libk5crypto3_1.21.3-3_i386.deb ...
Unpacking libk5crypto3:i386 (1.21.3-3) ...
Selecting previously unselected package libkeyutils1:i386.
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Unpacking libkeyutils1:i386 (1.6.3-4) ...
Selecting previously unselected package libkrb5-3:i386.
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Unpacking libkrb5-3:i386 (1.21.3-3) ...
Selecting previously unselected package libgssapi-krb5-2:i386.
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Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ...
Selecting previously unselected package libtirpc-common.
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Unpacking libtirpc-common (1.3.4+ds-1.3) ...
Selecting previously unselected package libtirpc3t64:i386.
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Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3 to /lib/i386-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3.0.0 to /lib/i386-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
Unpacking libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ...
Selecting previously unselected package libnsl2:i386.
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Unpacking libnsl2:i386 (1.3.0-3+b3) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../13-readline-common_8.2-5_all.deb ...
Unpacking readline-common (8.2-5) ...
Selecting previously unselected package libreadline8t64:i386.
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Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
Unpacking libreadline8t64:i386 (8.2-5) ...
Selecting previously unselected package libpython3.12-stdlib:i386.
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Selecting previously unselected package python3.12.
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Unpacking python3.12 (3.12.7-3) ...
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Setting up python3-minimal (3.12.6-1) ...
Selecting previously unselected package python3.
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Unpacking python3 (3.12.6-1) ...
Selecting previously unselected package libproc2-0:i386.
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Unpacking libmagic1t64:i386 (1:5.45-3+b1) ...
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Unpacking man-db (2.13.0-1) ...
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Unpacking m4 (1.4.19-4) ...
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Unpacking cmake-data (3.30.5-1) ...
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Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Selecting previously unselected package libarchive13t64:i386.
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Unpacking libarchive13t64:i386 (3.7.4-1.1) ...
Selecting previously unselected package libbrotli1:i386.
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Unpacking libbrotli1:i386 (1.1.0-2+b6) ...
Selecting previously unselected package libsasl2-modules-db:i386.
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Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ...
Selecting previously unselected package libsasl2-2:i386.
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Unpacking libsasl2-2:i386 (2.1.28+dfsg1-8) ...
Selecting previously unselected package libldap-2.5-0:i386.
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Unpacking libldap-2.5-0:i386 (2.5.18+dfsg-3+b1) ...
Selecting previously unselected package libnghttp2-14:i386.
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Selecting previously unselected package librtmp1:i386.
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Unpacking libcurl4t64:i386 (8.11.0-1) ...
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Unpacking libjsoncpp26:i386 (1.9.6-3) ...
Selecting previously unselected package librhash1:i386.
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Unpacking librhash1:i386 (1.4.5-1) ...
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Unpacking libuv1t64:i386 (1.48.0-7) ...
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Unpacking cmake (3.30.5-1) ...
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Unpacking comerr-dev:i386 (2.1-1.47.1-1+b1) ...
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Setting up libpsl5t64:i386 (0.21.2-1.1+b1) ...
Setting up libnghttp2-14:i386 (1.64.0-1) ...
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Setting up m4 (1.4.19-4) ...
Setting up libevent-2.1-7t64:i386 (2.1.12-stable-10+b1) ...
Setting up libcom-err2:i386 (1.47.1-1+b1) ...
Setting up file (1:5.45-3+b1) ...
Setting up libelf1t64:i386 (0.192-4) ...
Setting up libpsl-dev:i386 (0.21.2-1.1+b1) ...
Setting up libkrb5support0:i386 (1.21.3-3) ...
Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ...
Setting up tzdata (2024b-4) ...

Current default time zone: 'Etc/UTC'
Local time is now:      Thu Dec  5 10:47:25 UTC 2024.
Universal Time is now:  Thu Dec  5 10:47:25 UTC 2024.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

Setting up autotools-dev (20220109.1) ...
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Setting up libpkgconf3:i386 (1.8.1-4) ...
Setting up libgmpxx4ldbl:i386 (2:6.3.0+dfsg-2+b2) ...
Setting up libexpat1-dev:i386 (2.6.4-1) ...
Setting up libgnutls-dane0t64:i386 (3.8.8-2) ...
Setting up libsqlite3-dev:i386 (3.46.1-1) ...
Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libjsoncpp26:i386 (1.9.6-3) ...
Setting up libproc2-0:i386 (2:4.0.4-6) ...
Setting up comerr-dev:i386 (2.1-1.47.1-1+b1) ...
Setting up libssl-dev:i386 (3.3.2-2) ...
Setting up libhwloc15:i386 (2.11.2-1) ...
Setting up autopoint (0.22.5-2) ...
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Setting up libk5crypto3:i386 (1.21.3-3) ...
Setting up libltdl7:i386 (2.4.7-8) ...
Setting up libidn2-dev:i386 (2.3.7-2+b1) ...
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Setting up libgfortran5:i386 (14.2.0-8) ...
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Setting up libnghttp3-9:i386 (1.6.0-2) ...
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Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libnuma1:i386 (2.0.18-1+b1) ...
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Setting up librhash1:i386 (1.4.5-1) ...
Setting up libkrb5-3:i386 (1.21.3-3) ...
Setting up libssh2-1t64:i386 (1.11.1-1) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up libtasn1-6-dev:i386 (4.19.0-3+b3) ...
Setting up readline-common (8.2-5) ...
Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up libbrotli-dev:i386 (1.1.0-2+b6) ...
Setting up chrpath (0.18-1) ...
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Setting up libp11-kit-dev:i386 (0.25.5-2+b1) ...
Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libgfortran-14-dev:i386 (14.2.0-8) ...
Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
Setting up gettext (0.22.5-2) ...
Setting up libgmp-dev:i386 (2:6.3.0+dfsg-2+b2) ...
Setting up nettle-dev:i386 (3.10-1+b1) ...
Setting up libtool (2.4.7-8) ...
Setting up hwloc-nox (2.11.2-1) ...
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Setting up libngtcp2-dev:i386 (1.9.1-1) ...
Setting up libldap-2.5-0:i386 (2.5.18+dfsg-3+b1) ...
Setting up pkgconf:i386 (1.8.1-4) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up libnuma-dev:i386 (2.0.18-1+b1) ...
Setting up dh-autoreconf (20) ...
Setting up libltdl-dev:i386 (2.4.7-8) ...
Setting up libldap-dev:i386 (2.5.18+dfsg-3+b1) ...
Setting up gfortran-14-i686-linux-gnu (14.2.0-8) ...
Setting up libgssapi-krb5-2:i386 (1.21.3-3) ...
Setting up libssh2-1-dev:i386 (1.11.1-1) ...
Setting up libjs-sphinxdoc (7.4.7-4) ...
Setting up libreadline8t64:i386 (8.2-5) ...
Setting up dh-strip-nondeterminism (1.14.0-1) ...
Setting up groff-base (1.23.0-5) ...
Setting up libhwloc-dev:i386 (2.11.2-1) ...
Setting up gfortran-14 (14.2.0-8) ...
Setting up libarchive13t64:i386 (3.7.4-1.1) ...
Setting up libgnutls28-dev:i386 (3.8.8-2) ...
Setting up libnghttp2-dev:i386 (1.64.0-1) ...
Setting up libcurl4t64:i386 (8.11.0-1) ...
Setting up libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ...
Setting up mpich (4.2.0-14) ...
update-alternatives: using /usr/bin/mpicc.mpich to provide /usr/bin/mpicc (mpi) in auto mode
update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun (mpirun) in auto mode
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libcurl3t64-gnutls:i386 (8.11.0-1) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libgssrpc4t64:i386 (1.21.3-3) ...
Setting up librtmp-dev:i386 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libmpich-dev:i386 (4.2.0-14) ...
update-alternatives: using /usr/include/i386-linux-gnu/mpich to provide /usr/include/i386-linux-gnu/mpi (mpi-i386-linux-gnu) in auto mode
Setting up mpi-default-dev (1.17) ...
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Setting up cmake (3.30.5-1) ...
Setting up libkadm5clnt-mit12:i386 (1.21.3-3) ...
Setting up libpython3.12-stdlib:i386 (3.12.7-3) ...
Setting up libkdb5-10t64:i386 (1.21.3-3) ...
Setting up python3.12 (3.12.7-3) ...
Setting up debhelper (13.20) ...
Setting up libpython3.12t64:i386 (3.12.7-3) ...
Setting up libkadm5srv-mit12:i386 (1.21.3-3) ...
Setting up libpython3-stdlib:i386 (3.12.6-1) ...
Setting up krb5-multidev:i386 (1.21.3-3) ...
Setting up python3 (3.12.6-1) ...
Setting up libpython3.12-dev:i386 (3.12.7-3) ...
Setting up libkrb5-dev:i386 (1.21.3-3) ...
Setting up python3.12-dev (3.12.7-3) ...
Setting up libpython3-dev:i386 (3.12.6-1) ...
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Setting up python3-all-dev (3.12.6-1) ...
Processing triggers for libc-bin (2.40-3) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
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Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/hyphy-2.5.63+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../hyphy_2.5.63+dfsg-1_source.changes
dpkg-buildpackage: info: source package hyphy
dpkg-buildpackage: info: source version 2.5.63+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
 debian/rules clean
dh clean --buildsystem=cmake
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.63+dfsg'
dh_auto_clean
make[1]: Leaving directory '/build/reproducible-path/hyphy-2.5.63+dfsg'
   dh_autoreconf_clean -O--buildsystem=cmake
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make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.63+dfsg'
dh_auto_configure -- -DINSTALL_PREFIX=/usr -DNOAVX=ON -DNOSSE3=ON
	cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DINSTALL_PREFIX=/usr -DNOAVX=ON -DNOSSE3=ON ..
-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test HAVE_SSE4_EXTENSIONS
-- Performing Test HAVE_SSE4_EXTENSIONS - Success
-- Performing Test HAVE_NEON_EXTENSIONS
-- Performing Test HAVE_NEON_EXTENSIONS - Failed
Set compiler flags to -fsigned-char -O3 -D_FORTIFY_SOURCE=2   -Wall -std=c++14 -msse4.1  
Set linker flags to -fsigned-char -O3 -D_FORTIFY_SOURCE=2   -Wall -std=c++14 -msse4.1   
-- Could NOT find BLAS (missing: BLAS_LIBRARIES) 
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Found CURL: /usr/lib/i386-linux-gnu/libcurl.so (found version "8.11.0")
/usr/lib/i386-linux-gnu/libcurl.so
Node not installed; API documentation will not be generated
-- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1")
-- Checking for module 'sqlite3'
--   Found sqlite3, version 3.46.1
-- Found SQLITE3: /usr/lib/i386-linux-gnu/libsqlite3.so
-- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found suitable version "1.3.1", minimum required is "1.2.9")
/usr/share/hyphy
-- Found MPI_C: /usr/lib/i386-linux-gnu/mpich/lib/libmpich.so (found version "4.1")
-- Found MPI_CXX: /usr/lib/i386-linux-gnu/mpich/lib/libmpichcxx.so (found version "4.1")
-- Found MPI: TRUE (found version "4.1")
-fsigned-char -O3 -D_FORTIFY_SOURCE=2   -Wall -std=c++14 -msse4.1     -fopenmp
-- Configuring done (3.4s)
-- Generating done (0.1s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
    CMAKE_INSTALL_LIBDIR
    CMAKE_INSTALL_LOCALSTATEDIR
    CMAKE_INSTALL_RUNSTATEDIR
    CMAKE_INSTALL_SYSCONFDIR
    FETCHCONTENT_FULLY_DISCONNECTED
    INSTALL_PREFIX
    NOSSE3


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make[1]: Leaving directory '/build/reproducible-path/hyphy-2.5.63+dfsg'
   debian/rules override_dh_auto_build
make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.63+dfsg'
dh_auto_build -- MP MPI
	cd obj-i686-linux-gnu && make -j11 "INSTALL=install --strip-program=true" MP MPI VERBOSE=1
make[2]: Entering directory '/build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu'
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/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2   -Wall -std=c++14 -msse4.1    -w -Weffc++ -Wextra -Wall  -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall  -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o -MF CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/associative_list.cpp
/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2   -Wall -std=c++14 -msse4.1    -w -Weffc++ -Wextra -Wall  -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall  -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o -MF CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/_hyExecutionContext.cpp
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/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2   -Wall -std=c++14 -msse4.1    -w -Weffc++ -Wextra -Wall  -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall  -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/alignment.cpp.o -MF CMakeFiles/hyphy.dir/src/core/alignment.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/alignment.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/alignment.cpp
/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2   -Wall -std=c++14 -msse4.1    -w -Weffc++ -Wextra -Wall  -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall  -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/avllist.cpp.o -MF CMakeFiles/hyphy.dir/src/core/avllist.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/avllist.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/avllist.cpp
[ 15%] Building CXX object CMakeFiles/hyphy.dir/src/core/batchlan2.cpp.o
/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2   -Wall -std=c++14 -msse4.1    -w -Weffc++ -Wextra -Wall  -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall  -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/avllistx.cpp.o -MF CMakeFiles/hyphy.dir/src/core/avllistx.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/avllistx.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/avllistx.cpp
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[ 25%] Building CXX object CMakeFiles/hyphy.dir/src/core/dataset.cpp.o
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[ 25%] Building CXX object CMakeFiles/hyphy.dir/src/core/dataset_filter_numeric.cpp.o
/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2   -Wall -std=c++14 -msse4.1    -w -Weffc++ -Wextra -Wall  -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall  -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/dataset_filter_numeric.cpp.o -MF CMakeFiles/hyphy.dir/src/core/dataset_filter_numeric.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/dataset_filter_numeric.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/dataset_filter_numeric.cpp
[ 25%] Building CXX object CMakeFiles/hyphy.dir/src/core/fisher_exact.cpp.o
/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2   -Wall -std=c++14 -msse4.1    -w -Weffc++ -Wextra -Wall  -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall  -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/fisher_exact.cpp.o -MF CMakeFiles/hyphy.dir/src/core/fisher_exact.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/fisher_exact.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/fisher_exact.cpp
[ 30%] Building CXX object CMakeFiles/hyphy.dir/src/core/formula_parsing_context.cpp.o
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/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2   -Wall -std=c++14 -msse4.1    -w -Weffc++ -Wextra -Wall  -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall  -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/formula_parsing_context.cpp.o -MF CMakeFiles/hyphy.dir/src/core/formula_parsing_context.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/formula_parsing_context.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/formula_parsing_context.cpp
/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2   -Wall -std=c++14 -msse4.1    -w -Weffc++ -Wextra -Wall  -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall  -Wno-int-to-pointer-cast -MD -MT CMakeFiles/hyphy.dir/src/core/formula.cpp.o -MF CMakeFiles/hyphy.dir/src/core/formula.cpp.o.d -o CMakeFiles/hyphy.dir/src/core/formula.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/formula.cpp
[ 30%] Building CXX object CMakeFiles/hyphy.dir/src/core/fstring.cpp.o
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[ 35%] Building CXX object CMakeFiles/hyphy.dir/src/core/global_object_lists.cpp.o
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[ 35%] Building CXX object CMakeFiles/hyphy.dir/src/core/global_things.cpp.o
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[ 35%] Building CXX object CMakeFiles/hyphy.dir/src/core/hbl_env.cpp.o
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[ 40%] Building CXX object CMakeFiles/hyphy.dir/src/core/hyFile.cpp.o
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[ 50%] Building CXX object CMakeFiles/hyphy.dir/src/core/nexus.cpp.o
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[ 55%] Building CXX object CMakeFiles/hyphy.dir/src/core/operation.cpp.o
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[ 55%] Building CXX object CMakeFiles/hyphy.dir/src/core/parser.cpp.o
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[ 55%] Building CXX object CMakeFiles/hyphy.dir/src/core/parser2.cpp.o
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[ 55%] Building CXX object CMakeFiles/hyphy.dir/src/core/polynoml.cpp.o
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[ 60%] Building CXX object CMakeFiles/hyphy.dir/src/core/simplelist.cpp.o
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[ 60%] Building CXX object CMakeFiles/hyphy.dir/src/core/site.cpp.o
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[ 70%] Building CXX object CMakeFiles/hyphy.dir/src/core/topology.cpp.o
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[ 70%] Building CXX object CMakeFiles/hyphy.dir/src/core/translation_table.cpp.o
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[ 70%] Building CXX object CMakeFiles/hyphy.dir/src/core/tree.cpp.o
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[ 75%] Building CXX object CMakeFiles/hyphy.dir/src/core/tree_iterator.cpp.o
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[ 75%] Building CXX object CMakeFiles/hyphy.dir/src/core/trie.cpp.o
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[ 80%] Building CXX object CMakeFiles/hyphy.dir/src/core/trie_iterator.cpp.o
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[ 80%] Building CXX object CMakeFiles/hyphy.dir/src/core/variable.cpp.o
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[ 80%] Building CXX object CMakeFiles/hyphy.dir/src/core/variablecontainer.cpp.o
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[ 85%] Building CXX object CMakeFiles/hyphy.dir/src/core/vector.cpp.o
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[ 85%] Building CXX object CMakeFiles/hyphy.dir/src/new/bayesgraph.cpp.o
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[ 85%] Building CXX object CMakeFiles/hyphy.dir/src/new/bayesgraph2.cpp.o
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[ 85%] Building CXX object CMakeFiles/hyphy.dir/src/new/bgm.cpp.o
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[ 90%] Building CXX object CMakeFiles/hyphy.dir/src/utils/hyphyunixutils.cpp.o
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[ 95%] Building CXX object CMakeFiles/hyphy.dir/src/contrib/mersenne_twister.cpp.o
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[ 95%] Building CXX object CMakeFiles/hyphy.dir/src/contrib/regex.cpp.o
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[ 95%] Building CXX object CMakeFiles/hyphy.dir/src/mains/unix.cpp.o
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[ 15%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/batchlanhelpers.cpp.o
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[ 15%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/batchlanruntime.cpp.o
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[ 20%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/calcnode.cpp.o
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[ 20%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o
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[ 20%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o
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[ 25%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o
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[ 25%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/fisher_exact.cpp.o
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[ 30%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/formula.cpp.o
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[ 30%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/formula_parsing_context.cpp.o
/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -D__ZLIB__ -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/core/include -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/contrib -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/lib/Link -I/build/reproducible-path/hyphy-2.5.63+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/mpich/include -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -D_FORTIFY_SOURCE=2   -Wall -std=c++14 -msse4.1    -w -Weffc++ -Wextra -Wall   -fopenmp -Weffc++ -Wextra -Wall -w -Weffc++ -Wextra -Wall  -Wno-int-to-pointer-cast -MD -MT CMakeFiles/HYPHYMPI.dir/src/core/formula_parsing_context.cpp.o -MF CMakeFiles/HYPHYMPI.dir/src/core/formula_parsing_context.cpp.o.d -o CMakeFiles/HYPHYMPI.dir/src/core/formula_parsing_context.cpp.o -c /build/reproducible-path/hyphy-2.5.63+dfsg/src/core/formula_parsing_context.cpp
[ 30%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/fstring.cpp.o
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[ 35%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o
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[ 35%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/global_things.cpp.o
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[ 35%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/hbl_env.cpp.o
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[ 40%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/hyFile.cpp.o
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[ 40%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o
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[ 40%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o
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[ 40%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o
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[ 45%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o
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[ 45%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o
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[ 50%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/matrix_mult.cpp.o
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[ 50%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o
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[ 50%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/ntuplestorage.cpp.o
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[ 55%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/operation.cpp.o
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[ 55%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/parser.cpp.o
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[ 55%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/parser2.cpp.o
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[ 55%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/polynoml.cpp.o
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[ 60%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o
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[ 60%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o
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[ 65%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o
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[ 70%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o
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[ 70%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/translation_table.cpp.o
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[ 70%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/tree.cpp.o
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[ 75%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/tree_iterator.cpp.o
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[ 75%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o
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[ 80%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/trie_iterator.cpp.o
[ 80%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/variable.cpp.o
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[ 80%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o
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[ 85%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/vector.cpp.o
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[ 85%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph.cpp.o
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[ 85%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/new/bgm.cpp.o
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[ 90%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/new/bgm2.cpp.o
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[ 90%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o
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[ 90%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o
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[ 95%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o
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[ 95%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/mains/unix.cpp.o
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[100%] Linking CXX executable HYPHYMPI
/usr/bin/cmake -E cmake_link_script CMakeFiles/HYPHYMPI.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/hyphy-2.5.63+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -fsigned-char -O3 -D_FORTIFY_SOURCE=2   -Wall -std=c++14 -msse4.1     CMakeFiles/HYPHYMPI.dir/src/core/_hyExecutionContext.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/alignment.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/associative_list.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllist.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllistx.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllistx_iterator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllistxl.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllistxl_iterator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/baseobj.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/batchlan.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/batchlan2.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/batchlanhelpers.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/batchlanruntime.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/calcnode.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/dataset.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/fisher_exact.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/formula.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/formula_parsing_context.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/fstring.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/global_object_lists.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/global_things.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/hbl_env.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/hyFile.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/matrix_mult.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/ntuplestorage.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/operation.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/parser.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/parser2.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/polynoml.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/string_file_wrapper.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/time_difference.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/translation_table.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/tree.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/tree_evaluator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/tree_iterator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/trie_iterator.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/variable.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/vector.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph2.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bgm.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bgm2.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o CMakeFiles/HYPHYMPI.dir/src/contrib/mersenne_twister.cpp.o CMakeFiles/HYPHYMPI.dir/src/contrib/regex.cpp.o CMakeFiles/HYPHYMPI.dir/src/mains/unix.cpp.o -o HYPHYMPI  -Wl,-rpath,/usr/lib/i386-linux-gnu/mpich/lib: -ldl -lpthread -lcrypto -lcurl -lssl -lsqlite3 /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/mpich/lib/libmpichcxx.so /usr/lib/i386-linux-gnu/mpich/lib/libmpich.so /usr/lib/gcc/i686-linux-gnu/14/libgomp.so /usr/lib/i386-linux-gnu/libpthread.a
make[5]: Leaving directory '/build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu'
[100%] Built target HYPHYMPI
make  -f CMakeFiles/MPI.dir/build.make CMakeFiles/MPI.dir/depend
make[5]: Entering directory '/build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu'
cd /build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/hyphy-2.5.63+dfsg /build/reproducible-path/hyphy-2.5.63+dfsg /build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu /build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu /build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu/CMakeFiles/MPI.dir/DependInfo.cmake "--color="
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make  -f CMakeFiles/MPI.dir/build.make CMakeFiles/MPI.dir/build
make[5]: Entering directory '/build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu'
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make[5]: Leaving directory '/build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu'
[100%] Built target MPI
make[4]: Leaving directory '/build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu'
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu/CMakeFiles 0
make[3]: Leaving directory '/build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu'
make[2]: Leaving directory '/build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu'
make[1]: Leaving directory '/build/reproducible-path/hyphy-2.5.63+dfsg'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.63+dfsg'
find "obj-i686-linux-gnu/" \
	-not -path "*/CMakeFiles/*" \
	-type f,l \
	-executable \
	-exec cp -v '{}' . \;
'obj-i686-linux-gnu/HYPHYMP' -> './HYPHYMP'
'obj-i686-linux-gnu/hyphy' -> './hyphy'
'obj-i686-linux-gnu/HYPHYMPI' -> './HYPHYMPI'
./run_unit_tests.sh
./tests/hbltests/UnitTests/HBLCommands/Abs.bf
./tests/hbltests/UnitTests/HBLCommands/Add.bf
./tests/hbltests/UnitTests/HBLCommands/Ampersand.bf
./tests/hbltests/UnitTests/HBLCommands/Arctan.bf
./tests/hbltests/UnitTests/HBLCommands/BayesianGraphicalModel.bf
./tests/hbltests/UnitTests/HBLCommands/Beta.bf
./tests/hbltests/UnitTests/HBLCommands/BranchLength.bf
./tests/hbltests/UnitTests/HBLCommands/Branchcount.bf
./tests/hbltests/UnitTests/HBLCommands/Branchname.bf
./tests/hbltests/UnitTests/HBLCommands/CChi2.bf
./tests/hbltests/UnitTests/HBLCommands/CGammaDist.bf
./tests/hbltests/UnitTests/HBLCommands/Call.bf
./tests/hbltests/UnitTests/HBLCommands/Caret.bf
./tests/hbltests/UnitTests/HBLCommands/Category.bf
./tests/hbltests/UnitTests/HBLCommands/Columns.bf
./tests/hbltests/UnitTests/HBLCommands/Continue.bf
./tests/hbltests/UnitTests/HBLCommands/Cos.bf
./tests/hbltests/UnitTests/HBLCommands/DataSet.bf
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./tests/hbltests/UnitTests/HBLCommands/DeleteObject.bf
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./tests/hbltests/UnitTests/HBLCommands/Divide.bf
./tests/hbltests/UnitTests/HBLCommands/Do.bf
./tests/hbltests/UnitTests/HBLCommands/DoSQL.bf
./tests/hbltests/UnitTests/HBLCommands/Dollarsign.bf
./tests/hbltests/UnitTests/HBLCommands/DoubleAmpersand.bf
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./tests/hbltests/UnitTests/HBLCommands/DoubleVerticalBar.bf
./tests/hbltests/UnitTests/HBLCommands/Eigensystem.bf
./tests/hbltests/UnitTests/HBLCommands/Erf.bf
./tests/hbltests/UnitTests/HBLCommands/Eval.bf
./tests/hbltests/UnitTests/HBLCommands/ExclamationPoint.bf
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./tests/hbltests/UnitTests/HBLCommands/Exp.bf
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./tests/hbltests/UnitTests/HBLCommands/Ffunction.bf
./tests/hbltests/UnitTests/HBLCommands/FindRoot.bf
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./tests/hbltests/UnitTests/HBLCommands/Function.bf
./tests/hbltests/UnitTests/HBLCommands/Gamma.bf
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./tests/hbltests/UnitTests/HBLCommands/Greaterthan.bf
./tests/hbltests/UnitTests/HBLCommands/Greaterthanorequalto.bf
./tests/hbltests/UnitTests/HBLCommands/HarvestFrequencies.bf
./tests/hbltests/UnitTests/HBLCommands/IBeta.bf
./tests/hbltests/UnitTests/HBLCommands/IGamma.bf
./tests/hbltests/UnitTests/HBLCommands/If.bf
./tests/hbltests/UnitTests/HBLCommands/Integrate.bf
./tests/hbltests/UnitTests/HBLCommands/Inverse.bf
./tests/hbltests/UnitTests/HBLCommands/JSON.bf
./tests/hbltests/UnitTests/HBLCommands/Join.bf
./tests/hbltests/UnitTests/HBLCommands/LUDecompose.bf
./tests/hbltests/UnitTests/HBLCommands/LUSolve.bf
./tests/hbltests/UnitTests/HBLCommands/Lessthan.bf
./tests/hbltests/UnitTests/HBLCommands/Lessthanorequalto.bf
./tests/hbltests/UnitTests/HBLCommands/LnGamma.bf
./tests/hbltests/UnitTests/HBLCommands/LoadFunctionLibrary.bf
./tests/hbltests/UnitTests/HBLCommands/Log.bf
./tests/hbltests/UnitTests/HBLCommands/MAccess_bracket.bf
./tests/hbltests/UnitTests/HBLCommands/Max.bf
./tests/hbltests/UnitTests/HBLCommands/Min.bf
./tests/hbltests/UnitTests/HBLCommands/Model.bf
./tests/hbltests/UnitTests/HBLCommands/Percentsign.bf
./tests/hbltests/UnitTests/HBLCommands/Random.bf
./tests/hbltests/UnitTests/HBLCommands/ReplicateConstraint.bf
./tests/hbltests/UnitTests/HBLCommands/RequireVersion.bf
./tests/hbltests/UnitTests/HBLCommands/RerootTree.bf
./tests/hbltests/UnitTests/HBLCommands/Return.bf
./tests/hbltests/UnitTests/HBLCommands/Rows.bf
./tests/hbltests/UnitTests/HBLCommands/Simplex.bf
./tests/hbltests/UnitTests/HBLCommands/Simplify.bf
./tests/hbltests/UnitTests/HBLCommands/SimulateDataSet.bf
./tests/hbltests/UnitTests/HBLCommands/Sin.bf
./tests/hbltests/UnitTests/HBLCommands/Sqrt.bf
./tests/hbltests/UnitTests/HBLCommands/Sscanf.bf
./tests/hbltests/UnitTests/HBLCommands/Subtract.bf
./tests/hbltests/UnitTests/HBLCommands/Tan.bf
./tests/hbltests/UnitTests/HBLCommands/Time.bf
./tests/hbltests/UnitTests/HBLCommands/TipCount.bf
./tests/hbltests/UnitTests/HBLCommands/TipName.bf
./tests/hbltests/UnitTests/HBLCommands/Topology.bf
./tests/hbltests/UnitTests/HBLCommands/Transpose.bf
./tests/hbltests/UnitTests/HBLCommands/Tree.bf
./tests/hbltests/UnitTests/HBLCommands/Type.bf
./tests/hbltests/UnitTests/HBLCommands/While.bf
./tests/hbltests/UnitTests/HBLCommands/ZCDF.bf
./tests/hbltests/UnitTests/HBLCommands/assert.bf
./tests/hbltests/UnitTests/HBLCommands/break.bf
./tests/hbltests/UnitTests/HBLCommands/fscanf_fprintf.bf
./tests/hbltests/UnitTests/HBLCommands/include.bf
./tests/hbltests/UnitTests/HBLCommands/lfunction.bf
./tests/hbltests/UnitTests/HBLCommands/libv3_iofunctions.bf
./tests/hbltests/UnitTests/HBLCommands/libv3_math.bf
./tests/hbltests/UnitTests/HBLCommands/libv3_utilityfunctions.bf
./tests/hbltests/UnitTests/HBLCommands/namespace.bf
\n\n------------------------ALL TEST PASSED------------------------------------\n
make[1]: Leaving directory '/build/reproducible-path/hyphy-2.5.63+dfsg'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=cmake
   dh_prep -O--buildsystem=cmake
   dh_auto_install -O--buildsystem=cmake
	cd obj-i686-linux-gnu && make -j11 install DESTDIR=/build/reproducible-path/hyphy-2.5.63\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/hyphy-2.5.63+dfsg -B/build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/partitionSequences.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper3.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionLRT.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGenerator.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGeneratorNoPS.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M2.def
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94GY94xREV_PARRIS_syn3.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate_Multirate.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_syn3.def
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/GY94.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M1.def
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2+Inv.def
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma1.def
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_synvar.def
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2.def
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREV.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M3.def
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentCodon.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ReduceDataSetMatrix.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimilarityPlot.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Gateaux.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NielsenYang.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SingleBreakpointRecomb.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeCorrelationCoefficients.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SimmondsAI.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/categoryEcho.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NucModelCompare.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper4.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SequentialAddition.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentCodonShared.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BranchSiteRELMultiModel.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/srs-ErrorEst.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc_supp.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc-ErrorEst.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/sir.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/srs.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRatio.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SequentialAddition.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/doNNISwap.bf
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-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/dSdN.bf
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-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/Drosophilia_adh.nex
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/datasets/H5N1_HA_5.nex
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/Phylohandbook.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LRT.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NucleotideBiases.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/LocalvsGlobal.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/NeutralExpectation.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/CountSubstitutions.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/EffectOfTopology.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/ErrorEstimates.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook/WhatsInTheMean.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/contrast-meme.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FEL.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/PRIME.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FADE.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/MEME.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/error-filter.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/SLAC.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FUBAR.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX-Groups.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/BranchSiteREL.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/SingleOmega.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/selection_lib.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/grid_compute.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FitMultiModel.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LZ_Complexity.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonModelCompare.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/RelativeRate.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_CMS_Aux.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MSS-joint-fitter.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/posteriors.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/NeighborJoining.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_MFReader_.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/heuristicMethodNPBootstrap.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ClusterByDistanceRange.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGEmulator_MF.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGASimProcessor.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper1.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestClade.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dSdNTreeTools.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_BMS_Aux.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/chooseDistanceFormula.def
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SlidingWindowAnalysis.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ConvertDataFile.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MergeSequences.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeNucDataFreq.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper1_mf.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ModelTest.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/relative_prot_rates.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/README_relative_prot_rates.md
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/plusF_helper.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ProteinAnalyses/ProteinGTRFit_helper.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TreeTools.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/simpleBootstrap.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relative_nucleotide_rates.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relratioBootstrap.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/queryTree.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRate.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/last.date
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GUI
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GUI/crayolaColors.def
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonBivariateRateProcessor.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/files.lst
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/selectModelParameters.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LRTRecombTest.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeDiNucData.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CodonToProtein.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TopologySearch.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSBivariateRateAnalysis.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/_tipDater.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PARRIS.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PartitionDataFile.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GARD.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AAModelComparison.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/DirectionalREL.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSResultProcessor.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LEISR.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BGM.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MolecularClock.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestBranchDNDS.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GateauxMR.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones_F.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA_empirical.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/models.lst
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters3.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECM
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECMu
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HKY85.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/190
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM+Freqs.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGFreqsEstimator.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtREV24
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/IAV
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/JTT
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/modellist.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/cpREV
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/WAG
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtMAM
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/H5N1
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LCAP
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVBetween
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LG
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/Dayhoff
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/BLOSUM62
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVWithin
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/rtREV
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/MtArt
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/VT
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16A
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAA.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/LCAP.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/S4
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/CF3x4.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff_F.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customCF3x4.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween+F.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV_F.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAUserFreqs.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84P.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/JC69_binary.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Default
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94with9freqs.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K3ST.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customF1x4.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAMuse95.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/PCH
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin+F.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters2.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F84.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F3x4.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAF81
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/BranchSiteTemplate.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94customF3x4.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwEX.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K2P.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94w9.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAFreqs.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GRM.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/custm4x4.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wEX.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAAFreq.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+MLFREQS.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94custom.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94x2.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81_binary.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters4.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAEqualInput
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16SvH.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/TrN.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/STGRM.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/UniversalCode.def
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM_F.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customFreqs.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/fitness.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F+omega.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV_1
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAA.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61multiple.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters5.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineHM.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24_F.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG_F.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineGamma.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwAA.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.dat
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Yang2000Distributions.def
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/reducedREV.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/distanceRMethodNPBootstrap.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MSS-selector.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MSS-selector-2.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/bayesgraph.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/pairwiseDistanceEstimator.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/branchSwappingFunctions.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/function-loader.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/UtilityFunctions.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/all-terms.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/stats.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/model_functions.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MSS.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/BS_REL.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_MH.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_TRIP.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/codon/MG_REV_PROPERTIES.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary/empirical.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary/charbinary.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/rate_variation.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/binary.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/parameters.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/empirical.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/REV.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/WAG.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/mt.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/gcpREV.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/LG.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/JC69.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/HIV.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrices/JTT.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/protein/matrix2dict_aux.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/frequencies.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/HKY85.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/GTR-MutSel.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/JC69.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/DNA/GTR.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/IOFunctions.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/random.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/regexp.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/math.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/convenience/matrix.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/estimators.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/alignments.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/trees.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/ancestral.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/genetic_code.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/mpi.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/bayesgraph.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/tasks/distances.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GA_CHC_Binary.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper2_mf.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LocalMolClock.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/ClusterAnalysis.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSDistributionComparison.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BranchSiteREL.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SandNSAmbigs.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/pairwiseDistanceEstimatorCounter.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/UpperBound.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CleanStopCodons.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentNucShared.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/KHTest.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/globalChecker.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignShared.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/DescriptiveStatistics.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/NJ.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/WriteDelimitedFiles.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/AncestralMapper.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/LocalMGREV.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/ProbabilityDistributions.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/CoalescentPostProcessor.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/BranchLengthFitters.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/CodonTools.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/HXB2Mapper.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/TreeFunctions.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/LocalMGREVMLFreqs.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/ReadDelimitedFiles.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/GrabBag.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/PostScript.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/MPITools.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/PS_Plotters.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Utility/DBTools.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MolClockAllRoots.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/BivariateCodonRateAnalysis.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/WANC.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MergeSites.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/RelativeRatio.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeNucProtData.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/distanceMethodNPBootstrap.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/dNdSRateAnalysis.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGIvL.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/MGvsGY.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/FitnessAAModels.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/doSPRSwap.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TestCladeMeans.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/readIndexFile.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/CleanGaps.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/relrateBootstrap.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/YangNielsenBranchSite2005.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SGEmulator.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/binomial.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonTools.def
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/K2P
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Unaligned_LZ
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonToolsMain.def
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC_RV
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Modified_Nei_Gojobori
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_binary
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_codon
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/CodonTools2.def
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN93_RV
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/K2P_RV
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance_aa
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC_MH
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Nei_Gojobori
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/T3P
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/JC69
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/PC
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN84
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/p_Distance
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/TN93
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Distances/Unaligned_LZ_FR
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/LHT.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/molclockBootstrap.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AddABias.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/GA_CHC.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SM-2019.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TopologySearchConstrained.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/AnalyzeCodonData.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/data
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/data/p51.nex
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/data/p51.aa
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/data/brown.nuc
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/data/integrase_BDA.nex
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Codon
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 3 params.
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 9 params.
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/CodonEFV/Equal
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Partition
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Observed In Data Set
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Estimated
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/AAEFV/Equal
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/codon.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Partition
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Observed In Data Set
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Estimated
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/NucEFV/Equal
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/nuc.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Half Normal
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Lognormal
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/2 Bin Discrete
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta-Gamma
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/General Discrete
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/Heterogeneity/Beta
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/aa.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionClasses/dinuc.bf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/K2P
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/User/Nucleotide/JC69
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xHKY85_3x4_2Rates.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/Lineage_MG94xHKY85.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94REVOmegaCF3x4.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV_GDD.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/GY94_3x4.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_3x4.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94xTN93_3x4.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_REV_3x4.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_HKY85x3_4.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REV.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/HKY85.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REVBetaGamma.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/F81.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/EFVEstimated.ibf
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/TrN.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Fitness.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/mtREV.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Jones.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Dayhoff.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/EIAA.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary/F81.mdl
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Euplotid_Nuclear.cod
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Thraustochytrium_mtDNA.cod
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Yeast_mtDNA.cod
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Invertebrate_mtDNA.cod
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ciliate.cod
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Mold_mtDNA.cod
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Flatworm_mtDNA.cod
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Echinoderm_mtDNA.cod
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ascidian_mtDNA.cod
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Blepharisma_Nuclear.cod
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Vertebratemtdna.cod
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/bin/hyphy
-- Installing: /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/bin/HYPHYMPI
-- Set non-toolchain portion of runtime path of "/build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/bin/HYPHYMPI" to ""
make[1]: Leaving directory '/build/reproducible-path/hyphy-2.5.63+dfsg/obj-i686-linux-gnu'
   debian/rules override_dh_install-arch
make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.63+dfsg'
# convert a few ISO-8859-1 files to address national-encoding
set -e \
; for file in /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PARRIS.bf /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl /build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/models.lst \
; do    iconv -f ISO-8859-1 -t UTF-8 < "${file}" > "${file}.new" \
;       mv -v "${file}.new" "${file}" \
; done
renamed '/build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PARRIS.bf.new' -> '/build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PARRIS.bf'
renamed '/build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl.new' -> '/build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl'
renamed '/build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/models.lst.new' -> '/build/reproducible-path/hyphy-2.5.63+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/models.lst'
dh_install -a
find -type f -name HYPHYMPI -exec chrpath --delete '{}' ';'
make[1]: Leaving directory '/build/reproducible-path/hyphy-2.5.63+dfsg'
   debian/rules override_dh_install-indep
make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.63+dfsg'
dh_install -i
make[1]: Leaving directory '/build/reproducible-path/hyphy-2.5.63+dfsg'
   debian/rules override_dh_installdocs-arch
make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.63+dfsg'
dh_installdocs -a
for news in debian/NEWS.Debian.* ; do \
    pkg=`echo ${news} | sed 's/.*NEWS.Debian.//'` ; \
    cp -a ${news} debian/${pkg}/usr/share/doc/${pkg}/NEWS.Debian ; \
done
make[1]: Leaving directory '/build/reproducible-path/hyphy-2.5.63+dfsg'
   debian/rules override_dh_installdocs-indep
make[1]: Entering directory '/build/reproducible-path/hyphy-2.5.63+dfsg'
dh_installdocs -i
make[1]: Leaving directory '/build/reproducible-path/hyphy-2.5.63+dfsg'
   dh_installchangelogs -O--buildsystem=cmake
   dh_installexamples -O--buildsystem=cmake
   dh_installman -O--buildsystem=cmake
   dh_installsystemduser -O--buildsystem=cmake
   dh_lintian -O--buildsystem=cmake
   dh_perl -O--buildsystem=cmake
   dh_link -O--buildsystem=cmake
   dh_strip_nondeterminism -O--buildsystem=cmake
   dh_compress -O--buildsystem=cmake
   dh_fixperms -O--buildsystem=cmake
   dh_missing -O--buildsystem=cmake
   dh_dwz -a -O--buildsystem=cmake
   dh_strip -a -O--buildsystem=cmake
   dh_makeshlibs -a -O--buildsystem=cmake
   dh_shlibdeps -a -O--buildsystem=cmake
   dh_installdeb -O--buildsystem=cmake
   dh_gencontrol -O--buildsystem=cmake
   dh_md5sums -O--buildsystem=cmake
   dh_builddeb -O--buildsystem=cmake
dpkg-deb: building package 'hyphy-pt' in '../hyphy-pt_2.5.63+dfsg-1_i386.deb'.
dpkg-deb: building package 'hyphy-pt-dbgsym' in '../hyphy-pt-dbgsym_2.5.63+dfsg-1_i386.deb'.
dpkg-deb: building package 'hyphy-mpi' in '../hyphy-mpi_2.5.63+dfsg-1_i386.deb'.
dpkg-deb: building package 'hyphy-mpi-dbgsym' in '../hyphy-mpi-dbgsym_2.5.63+dfsg-1_i386.deb'.
dpkg-deb: building package 'hyphy-common' in '../hyphy-common_2.5.63+dfsg-1_all.deb'.
 dpkg-genbuildinfo --build=binary -O../hyphy_2.5.63+dfsg-1_i386.buildinfo
 dpkg-genchanges --build=binary -O../hyphy_2.5.63+dfsg-1_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/36440 and its subdirectories
I: Current time: Wed Dec  4 22:49:05 -12 2024
I: pbuilder-time-stamp: 1733395745
Thu Dec  5 10:49:06 UTC 2024  I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net.
Thu Dec  5 10:49:06 UTC 2024  I: Preparing to do remote build '2' on ionos6-i386.debian.net.
Thu Dec  5 10:57:39 UTC 2024  I: Deleting $TMPDIR on ionos6-i386.debian.net.
Thu Dec  5 10:57:39 UTC 2024  I: hyphy_2.5.63+dfsg-1_i386.changes:
Format: 1.8
Date: Sun, 03 Nov 2024 11:54:22 +0100
Source: hyphy
Binary: hyphy-common hyphy-mpi hyphy-mpi-dbgsym hyphy-pt hyphy-pt-dbgsym
Architecture: all i386
Version: 2.5.63+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
 hyphy-common - Hypothesis testing using Phylogenies (common files)
 hyphy-mpi  - Hypothesis testing using Phylogenies (MPI version)
 hyphy-pt   - Hypothesis testing using Phylogenies (pthreads version)
Changes:
 hyphy (2.5.63+dfsg-1) unstable; urgency=medium
 .
   * New upstream version 2.5.63+dfsg
   * set-zlib-after-setting-default-libs.patch: unfuzz.
   * use_debian_sqlite.patch: unfuzz.
   * d/rules: locate all HYPHYMPI to erase DT_RUNPATH.
Checksums-Sha1:
 78924819119e969f82ae3765ec82900d0929ac6c 606328 hyphy-common_2.5.63+dfsg-1_all.deb
 42c99d00863d83ed3d110e57c4f08791be5b006c 3172944 hyphy-mpi-dbgsym_2.5.63+dfsg-1_i386.deb
 6b070a8093c4870c95b95bd617cd5b4d557542c4 1039992 hyphy-mpi_2.5.63+dfsg-1_i386.deb
 1d081cbec8cbda10996c1e40299ca32eb30c4061 3109864 hyphy-pt-dbgsym_2.5.63+dfsg-1_i386.deb
 51c2df6c219909b0391d80a1c9e0d1430ce1e26c 1018652 hyphy-pt_2.5.63+dfsg-1_i386.deb
 f3d61dc572ce5ff8be2fff670b5fa94020f7f803 9434 hyphy_2.5.63+dfsg-1_i386.buildinfo
Checksums-Sha256:
 3b7aa5d312a64bfddd7885ff38d36dc9c3ca3af514706ecf2120a18770195dea 606328 hyphy-common_2.5.63+dfsg-1_all.deb
 ef774c16d068051358f14e655576834cf5e9b379c87526fede979a88e5200872 3172944 hyphy-mpi-dbgsym_2.5.63+dfsg-1_i386.deb
 9234802aeacde94fc8a7ccb2680f3fcd66daad46071daf80372bbd73bc0a98c2 1039992 hyphy-mpi_2.5.63+dfsg-1_i386.deb
 9b5d64cc652a16fbc192af25696fab5202e84a860052c117c9046eb244485e72 3109864 hyphy-pt-dbgsym_2.5.63+dfsg-1_i386.deb
 e258737569bf853985d14ea64763b0922806be92fff4f902ac2049daf8ebff9b 1018652 hyphy-pt_2.5.63+dfsg-1_i386.deb
 879cf3d50e6cf373ee7665403ba6e2673eb531eb59dae4bc7068ff6a52c27115 9434 hyphy_2.5.63+dfsg-1_i386.buildinfo
Files:
 1ff56b5ebe9079ae65cdf68df56fd063 606328 science optional hyphy-common_2.5.63+dfsg-1_all.deb
 b185b3fa7e94e8686df5288f10ab32c0 3172944 debug optional hyphy-mpi-dbgsym_2.5.63+dfsg-1_i386.deb
 fd66348ce1e50dbf2634805ba17a1743 1039992 science optional hyphy-mpi_2.5.63+dfsg-1_i386.deb
 d17d500f2e505fac664259f119b9dcec 3109864 debug optional hyphy-pt-dbgsym_2.5.63+dfsg-1_i386.deb
 f12234050ef8ecf0c1191ebc485d1128 1018652 science optional hyphy-pt_2.5.63+dfsg-1_i386.deb
 59e0175d5f79790315aea689d64e742b 9434 science optional hyphy_2.5.63+dfsg-1_i386.buildinfo
Thu Dec  5 10:57:40 UTC 2024  I: diffoscope 283 will be used to compare the two builds:
Running as unit: rb-diffoscope-i386_1-48775.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.SJD6x1S7/hyphy_2.5.63+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.SJD6x1S7/hyphy_2.5.63+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.SJD6x1S7/hyphy_2.5.63+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.SJD6x1S7/b1/hyphy_2.5.63+dfsg-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.SJD6x1S7/b2/hyphy_2.5.63+dfsg-1_i386.changes

## command (total time: 0.000s)
       0.000s      1 call     cmp (internal)

## has_same_content_as (total time: 0.000s)
       0.000s      1 call     abc.DotChangesFile

## main (total time: 0.421s)
       0.421s      2 calls    outputs
       0.000s      1 call     cleanup

## recognizes (total time: 0.095s)
       0.095s     12 calls    diffoscope.comparators.binary.FilesystemFile

## specialize (total time: 0.000s)
       0.000s      1 call     specialize
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 728ms
CPU time consumed: 727ms
Thu Dec  5 10:57:42 UTC 2024  I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists.
Thu Dec  5 10:57:42 UTC 2024  I: hyphy from trixie built successfully and reproducibly on i386.
Thu Dec  5 10:57:43 UTC 2024  I: Submitting .buildinfo files to external archives:
Thu Dec  5 10:57:43 UTC 2024  I: Submitting 12K	b1/hyphy_2.5.63+dfsg-1_i386.buildinfo.asc
Thu Dec  5 10:57:44 UTC 2024  I: Submitting 12K	b2/hyphy_2.5.63+dfsg-1_i386.buildinfo.asc
Thu Dec  5 10:57:44 UTC 2024  I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Thu Dec  5 10:57:44 UTC 2024  I: Done submitting .buildinfo files.
Thu Dec  5 10:57:44 UTC 2024  I: Removing signed hyphy_2.5.63+dfsg-1_i386.buildinfo.asc files:
removed './b1/hyphy_2.5.63+dfsg-1_i386.buildinfo.asc'
removed './b2/hyphy_2.5.63+dfsg-1_i386.buildinfo.asc'