Wed May 8 13:09:40 UTC 2024 I: starting to build gemmi/trixie/i386 on jenkins on '2024-05-08 13:09' Wed May 8 13:09:40 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_8/27323/console.log Wed May 8 13:09:40 UTC 2024 I: Downloading source for trixie/gemmi=0.6.4+ds-1 --2024-05-08 13:09:40-- http://deb.debian.org/debian/pool/main/g/gemmi/gemmi_0.6.4%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2280 (2.2K) [text/prs.lines.tag] Saving to: ‘gemmi_0.6.4+ds-1.dsc’ 0K .. 100% 335M=0s 2024-05-08 13:09:40 (335 MB/s) - ‘gemmi_0.6.4+ds-1.dsc’ saved [2280/2280] Wed May 8 13:09:40 UTC 2024 I: gemmi_0.6.4+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: gemmi Binary: gemmi, gemmi-dev, python3-gemmi Architecture: any Version: 0.6.4+ds-1 Maintainer: Debichem Team Uploaders: Andrius Merkys , Homepage: https://project-gemmi.github.io Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/debichem-team/gemmi Vcs-Git: https://salsa.debian.org/debichem-team/gemmi.git Testsuite: autopkgtest Testsuite-Triggers: python3-numpy, python3-pytest Build-Depends: cmake, debhelper-compat (= 13), dh-python, doctest-dev, help2man, libstb-dev, python3-dev, python3-numpy , python3-pybind11 (>= 2.6.0), python3-pytest , tao-pegtl-dev, zlib1g-dev Package-List: gemmi deb science optional arch=any gemmi-dev deb libdevel optional arch=any python3-gemmi deb python optional arch=any Checksums-Sha1: 36c3249f3898003266d18255ca554c336a59c858 1274276 gemmi_0.6.4+ds.orig.tar.xz 070bde6223aa70d7b16c70eb3fe8900eabd0c023 6624 gemmi_0.6.4+ds-1.debian.tar.xz Checksums-Sha256: d1f31bd3364ba814c207cced8047fa510def063c13a26174f9fd2107b0fdb3bc 1274276 gemmi_0.6.4+ds.orig.tar.xz fecbe29dfd90d3495ab3e4c71a0bec762c7aaa1bed309d646d5050d7e8fe1bb0 6624 gemmi_0.6.4+ds-1.debian.tar.xz Files: cc36814e434a91597c9c9bb422cb5404 1274276 gemmi_0.6.4+ds.orig.tar.xz fe23fee2ba8de266e013aac28bf611aa 6624 gemmi_0.6.4+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmWBXvkSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHyu8P/RCw4AHFzery/TionFYm4V9PAdm83ULd v/qtVqRmPxnd+jKOaCOB727XOGhXYjwkdxhbB5qSg1RB72vZyWrCaT9Py+jgibte bUEg8iDMLCZBOpXT61xS7hpy05/Xxk/aODzmaX+jSrC72jyouGWXmOQJZAtuJZuK 5kK/gFx0pp4e3ut2dTm/YFAO+IcEYStx+r3tX06LBWBTI9sAgaFdcvQEsMdtfReo 4FlDaAhGa/lxt5vRz/u1VpRXdySxLfntxwqJE7Q7btAM9R9x6CV9gevu9MPk1RAQ ukrPsiUYl7Gs+xe105ktx9tuEA4025hxh/peze+Tn1NZNR27f8sxK4M28BpOp7v3 8zmw1sPd0hcMnIIEa/W1g+DGjVH2xh5qxkPnVbtJ7MULoBbQ/gOc03yP0a03voZ+ cXxrxv1G9uFcqveecPrAmr3IYWrhQzwUR6rVSYzBLhqDlRQiLD0TQpxJSJdF1/xR Q7gi8cWW1TV2FyvTpTPOFUpBylmvyiOSJpQ3QTnibIGX7Qqqs/juZY89wPMKEfOo RV8dlhqFCpaahCsNjxJuBUqUZDKJdJ8sod/UfoWQBdL4QkfOeja4dw6uHv58hcdr YXrTWkl+/Q4qp/FvGRVBacE1Nb4sWN+V5MdnTmDY4v5sLG/vjpNAK37wV2nrdY6R 5+8ufK4oqrZV =cff8 -----END PGP SIGNATURE----- Wed May 8 13:09:40 UTC 2024 I: Checking whether the package is not for us Wed May 8 13:09:40 UTC 2024 I: Starting 1st build on remote node ionos16-i386.debian.net. Wed May 8 13:09:40 UTC 2024 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Wed May 8 13:18:15 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jun 10 07:32:43 -12 2025 I: pbuilder-time-stamp: 1749583963 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [gemmi_0.6.4+ds-1.dsc] I: copying [./gemmi_0.6.4+ds.orig.tar.xz] I: copying [./gemmi_0.6.4+ds-1.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Dec 19 09:14:33 2023 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./gemmi_0.6.4+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting gemmi in gemmi-0.6.4+ds dpkg-source: info: unpacking gemmi_0.6.4+ds.orig.tar.xz dpkg-source: info: unpacking gemmi_0.6.4+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-system-tao-pegtl.patch dpkg-source: info: applying use-system-doctest.patch dpkg-source: info: applying tao-pegtl-3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/81448/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='a83e2bccc1b14d3395b4a6a70b86499f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='81448' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5Ywlg3Sh/pbuilderrc_s9p3 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5Ywlg3Sh/b1 --logfile b1/build.log gemmi_0.6.4+ds-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos16-i386 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 8 17:47 /bin -> usr/bin I: user script /srv/workspace/pbuilder/81448/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cmake, debhelper-compat (= 13), dh-python, doctest-dev, help2man, libstb-dev, python3-dev, python3-numpy, python3-pybind11 (>= 2.6.0), python3-pytest, tao-pegtl-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19683 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on doctest-dev; however: Package doctest-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on libstb-dev; however: Package libstb-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pybind11 (>= 2.6.0); however: Package python3-pybind11 is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on tao-pegtl-dev; however: Package tao-pegtl-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} doctest-dev{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap-2.5-0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libreadline8t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libstb-dev{a} libstb0t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} pybind11-dev{a} python3{a} python3-dev{a} python3-distutils{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pybind11{a} python3-pytest{a} python3-setuptools{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} tao-pegtl-dev{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libeigen3-dev libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix python3-pygments wget 0 packages upgraded, 97 newly installed, 0 to remove and 0 not upgraded. Need to get 63.5 MB of archives. After unpacking 255 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 liblocale-gettext-perl i386 1.07-7 [15.1 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libpython3.11-minimal i386 3.11.9-1 [817 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.2-1 [107 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 python3.11-minimal i386 3.11.9-1 [1918 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.11.8-1 [26.3 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 tzdata all 2024a-3 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-4 [69.3 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-4 [171 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpython3.11-stdlib i386 3.11.9-1 [1795 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 python3.11 i386 3.11.9-1 [602 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.11.8-1 [9336 B] Get: 14 http://deb.debian.org/debian trixie/main i386 python3 i386 3.11.8-1 [27.4 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 libproc2-0 i386 2:4.0.4-4 [65.4 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 procps i386 2:4.0.4-4 [876 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3 [42.9 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-4 [1194 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40-8 [97.2 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.1-1 [1421 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b3 [727 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 libarchive13t64 i386 3.7.2-2 [387 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b3 [314 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.20.1-6+b1 [36.1 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.1~rc2-1 [22.8 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.20.1-6+b1 [83.2 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get: 40 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.20.1-6+b1 [360 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.20.1-6+b1 [145 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-6 [20.5 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-6 [60.6 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.17+dfsg-1 [198 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.61.0-1+b1 [84.0 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.0-4.1+b2 [225 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 libcurl4t64 i386 8.7.1-3 [477 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libjsoncpp25 i386 1.9.5-6+b2 [89.2 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 librhash0 i386 1.4.3-3+b1 [143 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libuv1t64 i386 1.48.0-1.1 [156 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 cmake-data all 3.29.2-2 [2167 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 cmake i386 3.29.2-2 [11.9 MB] Get: 55 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 62 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-1+b1 [194 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 python3-distutils all 3.12.3-1 [131 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 68.1.2-2 [468 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20240422 [107 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 doctest-dev all 2.4.11-1 [216 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 help2man i386 1.49.3 [198 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.0-3 [140 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 libexpat1-dev i386 2.6.2-1 [165 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14-20240330-1 [735 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.0-3 [2167 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 libpython3.11t64 i386 3.11.9-1 [1982 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg-3.1 [915 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 libpython3.11-dev i386 3.11.9-1 [4632 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 libpython3-dev i386 3.11.8-1 [9600 B] Get: 86 http://deb.debian.org/debian trixie/main i386 libstb0t64 i386 0.0~git20230129.5736b15+ds-1.2 [216 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 libstb-dev i386 0.0~git20230129.5736b15+ds-1.2 [596 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 pybind11-dev all 2.11.1-2 [191 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 python3.11-dev i386 3.11.9-1 [501 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 python3-dev i386 3.11.8-1 [26.1 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 92 http://deb.debian.org/debian trixie/main i386 python3-numpy i386 1:1.26.4+ds-8 [5469 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 python3-packaging all 24.0-1 [45.5 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 python3-pybind11 all 2.11.1-2 [201 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 python3-pytest all 7.4.4-3 [239 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 tao-pegtl-dev all 3.2.7-1 [69.4 kB] Fetched 63.5 MB in 1s (78.8 MB/s) debconf: 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/gemmi-0.6.4+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gemmi_0.6.4+ds-1_source.changes dpkg-buildpackage: info: source package gemmi dpkg-buildpackage: info: source version 0.6.4+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem cmake --with python3 dh_auto_clean -O--buildsystem=cmake debian/rules execute_after_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds' rm -rf .pytest_cache examples/__pycache__ tests/__pycache__ make[1]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem cmake --with python3 dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds' dh_auto_configure -- -DBUILD_SHARED_LIBS=OFF -DUSE_PYTHON=ON cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DBUILD_SHARED_LIBS=OFF -DUSE_PYTHON=ON .. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Gemmi version 0.6.4 -- Build type: None -- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found version "1.3") -- Benchmarks not configured. -- The python module will be built. -- Found Python: /usr/bin/python3 (found version "3.11.9") found components: Interpreter Development.Module -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/lib/python3/dist-packages/pybind11/include (found version "2.11.1") -- Found pybind11 2.11.1: /usr/lib/python3/dist-packages/pybind11/include;/usr/include/python3.11 -- Configuring done (1.7s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu make[1]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds' dh_auto_build -O--buildsystem=cmake cd obj-i686-linux-gnu && make -j22 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/gemmi-0.6.4+ds -B/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' make -f CMakeFiles/gemmi_cpp.dir/build.make CMakeFiles/gemmi_cpp.dir/depend make -f CMakeFiles/options.dir/build.make CMakeFiles/options.dir/depend make[3]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' cd /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.6.4+ds /build/reproducible-path/gemmi-0.6.4+ds /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/options.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' cd /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.6.4+ds 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-Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/ddl.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/ddl.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/ddl.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/src/ddl.cpp [ 13%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/mtz2cif.cpp.o /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/eig3.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/eig3.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/eig3.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/src/eig3.cpp /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/mmcif.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/mmcif.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/mmcif.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/src/mmcif.cpp [ 13%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/sprintf.cpp.o [ 15%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/read_cif.cpp.o /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/mmread_gz.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/mmread_gz.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/mmread_gz.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/src/mmread_gz.cpp [ 17%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/calculate.cpp.o [ 17%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/resinfo.cpp.o /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/mtz2cif.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/mtz2cif.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/mtz2cif.cpp.o -c 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/build/reproducible-path/gemmi-0.6.4+ds/src/read_cif.cpp [ 21%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/xds_ascii.cpp.o [ 26%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/to_mmcif.cpp.o [ 26%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/monlib.cpp.o [ 26%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/to_pdb.cpp.o [ 23%] Building CXX object CMakeFiles/gemmi_cpp.dir/src/topo.cpp.o /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/resinfo.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/resinfo.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/resinfo.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/src/resinfo.cpp /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/riding_h.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/riding_h.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/riding_h.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/src/riding_h.cpp /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/to_mmcif.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/to_mmcif.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/to_mmcif.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/src/to_mmcif.cpp /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/to_pdb.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/to_pdb.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/to_pdb.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/src/to_pdb.cpp /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/monlib.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/monlib.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/monlib.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/src/monlib.cpp /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/topo.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/topo.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/topo.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/src/topo.cpp /usr/bin/c++ -DGEMMI_BUILD -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_cpp.dir/src/xds_ascii.cpp.o -MF CMakeFiles/gemmi_cpp.dir/src/xds_ascii.cpp.o.d -o CMakeFiles/gemmi_cpp.dir/src/xds_ascii.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/src/xds_ascii.cpp /build/reproducible-path/gemmi-0.6.4+ds/src/sprintf.cpp:30:86: note: '#pragma message: Using system stb_sprintf.h, not the bundled one. It may not work.' 30 | # pragma message("Using system stb_sprintf.h, not the bundled one. It may not work.") | ^ In file included from /build/reproducible-path/gemmi-0.6.4+ds/prog/options.cpp:8: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/xds_ascii.hpp:11, from /build/reproducible-path/gemmi-0.6.4+ds/src/xds_ascii.cpp:3: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/mtz.hpp:23, from /build/reproducible-path/gemmi-0.6.4+ds/src/mtz.cpp:3: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/mtz.hpp:23, from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/mtz2cif.hpp:14, from /build/reproducible-path/gemmi-0.6.4+ds/src/mtz2cif.cpp:3: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/json.hpp:19, from /build/reproducible-path/gemmi-0.6.4+ds/src/read_cif.cpp:5: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/json.hpp:19, from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/mmread.hpp:12, from /build/reproducible-path/gemmi-0.6.4+ds/src/mmread_gz.cpp:4: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ make[3]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' [ 26%] Built target options [ 28%] Linking CXX static library libgemmi_cpp.a /usr/bin/cmake -P CMakeFiles/gemmi_cpp.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/gemmi_cpp.dir/link.txt --verbose=1 /usr/bin/ar qc libgemmi_cpp.a CMakeFiles/gemmi_cpp.dir/src/align.cpp.o CMakeFiles/gemmi_cpp.dir/src/assembly.cpp.o CMakeFiles/gemmi_cpp.dir/src/calculate.cpp.o CMakeFiles/gemmi_cpp.dir/src/crd.cpp.o CMakeFiles/gemmi_cpp.dir/src/ddl.cpp.o CMakeFiles/gemmi_cpp.dir/src/eig3.cpp.o CMakeFiles/gemmi_cpp.dir/src/mmcif.cpp.o CMakeFiles/gemmi_cpp.dir/src/mmread_gz.cpp.o CMakeFiles/gemmi_cpp.dir/src/mtz.cpp.o CMakeFiles/gemmi_cpp.dir/src/mtz2cif.cpp.o CMakeFiles/gemmi_cpp.dir/src/polyheur.cpp.o CMakeFiles/gemmi_cpp.dir/src/read_cif.cpp.o CMakeFiles/gemmi_cpp.dir/src/resinfo.cpp.o CMakeFiles/gemmi_cpp.dir/src/riding_h.cpp.o CMakeFiles/gemmi_cpp.dir/src/sprintf.cpp.o CMakeFiles/gemmi_cpp.dir/src/to_mmcif.cpp.o CMakeFiles/gemmi_cpp.dir/src/to_pdb.cpp.o CMakeFiles/gemmi_cpp.dir/src/monlib.cpp.o CMakeFiles/gemmi_cpp.dir/src/topo.cpp.o CMakeFiles/gemmi_cpp.dir/src/xds_ascii.cpp.o /usr/bin/ranlib libgemmi_cpp.a make[3]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' [ 28%] Built target gemmi_cpp make -f CMakeFiles/gemmi_prog.dir/build.make CMakeFiles/gemmi_prog.dir/depend make -f CMakeFiles/gemmi_py.dir/build.make CMakeFiles/gemmi_py.dir/depend make[3]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' cd /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.6.4+ds /build/reproducible-path/gemmi-0.6.4+ds /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_py.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' cd /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.6.4+ds /build/reproducible-path/gemmi-0.6.4+ds /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' make -f CMakeFiles/gemmi_py.dir/build.make CMakeFiles/gemmi_py.dir/build make -f CMakeFiles/gemmi_prog.dir/build.make CMakeFiles/gemmi_prog.dir/build make[3]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' [ 30%] Building CXX object CMakeFiles/gemmi_py.dir/python/gemmi.cpp.o [ 30%] Building CXX object CMakeFiles/gemmi_py.dir/python/mol.cpp.o [ 32%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/align.cpp.o [ 34%] Building CXX object CMakeFiles/gemmi_py.dir/python/align.cpp.o [ 34%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/blobs.cpp.o [ 34%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/cif2mtz.cpp.o [ 34%] Building CXX object CMakeFiles/gemmi_py.dir/python/ccp4.cpp.o [ 36%] Building CXX object CMakeFiles/gemmi_py.dir/python/chemcomp.cpp.o /usr/bin/c++ -Dgemmi_py_EXPORTS -I/build/reproducible-path/gemmi-0.6.4+ds/include -isystem 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39%] Building CXX object CMakeFiles/gemmi_py.dir/python/custom.cpp.o /usr/bin/c++ -Dgemmi_py_EXPORTS -I/build/reproducible-path/gemmi-0.6.4+ds/include -isystem /usr/include/python3.11 -isystem /usr/lib/python3/dist-packages/pybind11/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/gemmi_py.dir/python/ccp4.cpp.o -MF CMakeFiles/gemmi_py.dir/python/ccp4.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/ccp4.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/python/ccp4.cpp [ 41%] Building CXX object CMakeFiles/gemmi_py.dir/python/cif.cpp.o [ 43%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/diff.cpp.o /usr/bin/c++ -Dgemmi_py_EXPORTS -I/build/reproducible-path/gemmi-0.6.4+ds/include -isystem /usr/include/python3.11 -isystem 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CMakeFiles/gemmi_prog.dir/prog/align.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/align.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/prog/align.cpp /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/blobs.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/blobs.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/blobs.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/prog/blobs.cpp /usr/bin/c++ -Dgemmi_py_EXPORTS -I/build/reproducible-path/gemmi-0.6.4+ds/include -isystem /usr/include/python3.11 -isystem /usr/lib/python3/dist-packages/pybind11/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong 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-I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/convert.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/convert.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/convert.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/prog/convert.cpp /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/diff.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/diff.cpp.o.d -o 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-D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/grep.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/grep.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/grep.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/prog/grep.cpp [ 54%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/ecalc.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/ecalc.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/ecalc.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/ecalc.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/prog/ecalc.cpp [ 56%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/h.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/h.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/h.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/h.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/prog/h.cpp In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/ccp4.hpp:19, from /build/reproducible-path/gemmi-0.6.4+ds/python/ccp4.cpp:3: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/mtz.hpp:23, from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/cif2mtz.hpp:15, from /build/reproducible-path/gemmi-0.6.4+ds/prog/cif2mtz.cpp:10: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/mtz.hpp:23, from /build/reproducible-path/gemmi-0.6.4+ds/prog/ecalc.cpp:5: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ [ 56%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/json2cif.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/json2cif.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/json2cif.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/json2cif.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/prog/json2cif.cpp In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/gz.hpp:13, from /build/reproducible-path/gemmi-0.6.4+ds/prog/grep.cpp:6: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/mtz.hpp:23, from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/cif2mtz.hpp:15, from /build/reproducible-path/gemmi-0.6.4+ds/python/hkl.cpp:9: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ [ 58%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/main.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/main.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/main.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/main.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/prog/main.cpp [ 58%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/map.cpp.o /usr/bin/c++ 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-fvisibility=hidden -fvisibility-inlines-hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/gemmi_py.dir/python/meta.cpp.o -MF CMakeFiles/gemmi_py.dir/python/meta.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/meta.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/python/meta.cpp In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/ccp4.hpp:19, from /build/reproducible-path/gemmi-0.6.4+ds/prog/map.cpp:6: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ [ 60%] Building CXX object CMakeFiles/gemmi_py.dir/python/monlib.cpp.o /usr/bin/c++ -Dgemmi_py_EXPORTS -I/build/reproducible-path/gemmi-0.6.4+ds/include -isystem /usr/include/python3.11 -isystem /usr/lib/python3/dist-packages/pybind11/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/gemmi_py.dir/python/monlib.cpp.o -MF CMakeFiles/gemmi_py.dir/python/monlib.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/monlib.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/python/monlib.cpp [ 60%] Building CXX object CMakeFiles/gemmi_py.dir/python/mtz.cpp.o /usr/bin/c++ -Dgemmi_py_EXPORTS -I/build/reproducible-path/gemmi-0.6.4+ds/include -isystem /usr/include/python3.11 -isystem /usr/lib/python3/dist-packages/pybind11/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -flto -fno-fat-lto-objects -Wno-psabi -MD -MT CMakeFiles/gemmi_py.dir/python/mtz.cpp.o -MF CMakeFiles/gemmi_py.dir/python/mtz.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/mtz.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/python/mtz.cpp In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/mtz.hpp:23, from /build/reproducible-path/gemmi-0.6.4+ds/python/mtz.cpp:3: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ [ 63%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/map2sf.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/map2sf.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/map2sf.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/map2sf.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/prog/map2sf.cpp In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/mtz.hpp:23, from /build/reproducible-path/gemmi-0.6.4+ds/prog/map2sf.cpp:10: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ [ 65%] Building CXX object CMakeFiles/gemmi_py.dir/python/read.cpp.o /usr/bin/c++ -Dgemmi_py_EXPORTS -I/build/reproducible-path/gemmi-0.6.4+ds/include -isystem /usr/include/python3.11 -isystem /usr/lib/python3/dist-packages/pybind11/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/gemmi_py.dir/python/read.cpp.o -MF CMakeFiles/gemmi_py.dir/python/read.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/read.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/python/read.cpp [ 67%] Building CXX object CMakeFiles/gemmi_py.dir/python/recgrid.cpp.o /usr/bin/c++ -Dgemmi_py_EXPORTS -I/build/reproducible-path/gemmi-0.6.4+ds/include -isystem /usr/include/python3.11 -isystem /usr/lib/python3/dist-packages/pybind11/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -flto -fno-fat-lto-objects -Wno-psabi -MD -MT CMakeFiles/gemmi_py.dir/python/recgrid.cpp.o -MF CMakeFiles/gemmi_py.dir/python/recgrid.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/recgrid.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/python/recgrid.cpp [ 67%] Building CXX object CMakeFiles/gemmi_py.dir/python/scaling.cpp.o /usr/bin/c++ -Dgemmi_py_EXPORTS -I/build/reproducible-path/gemmi-0.6.4+ds/include -isystem /usr/include/python3.11 -isystem /usr/lib/python3/dist-packages/pybind11/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/gemmi_py.dir/python/scaling.cpp.o -MF CMakeFiles/gemmi_py.dir/python/scaling.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/scaling.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/python/scaling.cpp [ 69%] Building CXX object CMakeFiles/gemmi_py.dir/python/search.cpp.o /usr/bin/c++ -Dgemmi_py_EXPORTS -I/build/reproducible-path/gemmi-0.6.4+ds/include -isystem /usr/include/python3.11 -isystem /usr/lib/python3/dist-packages/pybind11/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/gemmi_py.dir/python/search.cpp.o -MF CMakeFiles/gemmi_py.dir/python/search.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/search.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/python/search.cpp [ 69%] Building CXX object CMakeFiles/gemmi_py.dir/python/sf.cpp.o /usr/bin/c++ -Dgemmi_py_EXPORTS -I/build/reproducible-path/gemmi-0.6.4+ds/include -isystem /usr/include/python3.11 -isystem /usr/lib/python3/dist-packages/pybind11/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/gemmi_py.dir/python/sf.cpp.o -MF CMakeFiles/gemmi_py.dir/python/sf.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/sf.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/python/sf.cpp [ 71%] Building CXX object CMakeFiles/gemmi_py.dir/python/sym.cpp.o /usr/bin/c++ -Dgemmi_py_EXPORTS -I/build/reproducible-path/gemmi-0.6.4+ds/include -isystem /usr/include/python3.11 -isystem /usr/lib/python3/dist-packages/pybind11/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/gemmi_py.dir/python/sym.cpp.o -MF CMakeFiles/gemmi_py.dir/python/sym.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/sym.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/python/sym.cpp [ 71%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/mapcoef.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/mapcoef.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/mapcoef.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/mapcoef.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/prog/mapcoef.cpp In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/pdb.hpp:23, from /build/reproducible-path/gemmi-0.6.4+ds/python/read.cpp:7: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ [ 73%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/mask.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/mask.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/mask.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/mask.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/prog/mask.cpp [ 76%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/merge.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/merge.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/merge.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/merge.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/prog/merge.cpp [ 76%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/mondiff.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/mondiff.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/mondiff.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/mondiff.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/prog/mondiff.cpp In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/mtz.hpp:23, from /build/reproducible-path/gemmi-0.6.4+ds/prog/mapcoef.cpp:11: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/ccp4.hpp:19, from /build/reproducible-path/gemmi-0.6.4+ds/prog/mask.cpp:5: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/gz.hpp:13, from /build/reproducible-path/gemmi-0.6.4+ds/prog/merge.cpp:11: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ [ 78%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/monlib_opt.cpp.o [ 76%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/mtz.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/monlib_opt.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/monlib_opt.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/monlib_opt.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/prog/monlib_opt.cpp /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -Wno-psabi -MD -MT CMakeFiles/gemmi_prog.dir/prog/mtz.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/mtz.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/mtz.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/prog/mtz.cpp [ 78%] Building CXX object CMakeFiles/gemmi_py.dir/python/topo.cpp.o /usr/bin/c++ -Dgemmi_py_EXPORTS -I/build/reproducible-path/gemmi-0.6.4+ds/include -isystem /usr/include/python3.11 -isystem /usr/lib/python3/dist-packages/pybind11/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/gemmi_py.dir/python/topo.cpp.o -MF CMakeFiles/gemmi_py.dir/python/topo.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/topo.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/python/topo.cpp [ 80%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/mtz2cif.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/mtz2cif.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/mtz2cif.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/mtz2cif.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/prog/mtz2cif.cpp In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/mtz.hpp:23, from /build/reproducible-path/gemmi-0.6.4+ds/prog/mtz.cpp:8: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/mtz.hpp:23, from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/mtz2cif.hpp:14, from /build/reproducible-path/gemmi-0.6.4+ds/prog/mtz2cif.cpp:8: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ [ 82%] Building CXX object CMakeFiles/gemmi_py.dir/python/unitcell.cpp.o /usr/bin/c++ -Dgemmi_py_EXPORTS -I/build/reproducible-path/gemmi-0.6.4+ds/include -isystem /usr/include/python3.11 -isystem /usr/lib/python3/dist-packages/pybind11/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/gemmi_py.dir/python/unitcell.cpp.o -MF CMakeFiles/gemmi_py.dir/python/unitcell.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/unitcell.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/python/unitcell.cpp [ 84%] Building CXX object CMakeFiles/gemmi_py.dir/python/write.cpp.o /usr/bin/c++ -Dgemmi_py_EXPORTS -I/build/reproducible-path/gemmi-0.6.4+ds/include -isystem /usr/include/python3.11 -isystem /usr/lib/python3/dist-packages/pybind11/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -flto -fno-fat-lto-objects -MD -MT CMakeFiles/gemmi_py.dir/python/write.cpp.o -MF CMakeFiles/gemmi_py.dir/python/write.cpp.o.d -o CMakeFiles/gemmi_py.dir/python/write.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/python/write.cpp [ 84%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/prep.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/prep.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/prep.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/prep.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/prog/prep.cpp [ 86%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/reindex.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/reindex.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/reindex.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/reindex.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/prog/reindex.cpp [ 86%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/residues.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/residues.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/residues.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/residues.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/prog/residues.cpp In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/mtz.hpp:23, from /build/reproducible-path/gemmi-0.6.4+ds/prog/reindex.cpp:9: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ [ 89%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/rmsz.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 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-DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/sfcalc.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/sfcalc.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/sfcalc.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/prog/sfcalc.cpp [ 93%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/sg.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden 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-DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/validate_mon.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/validate_mon.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/validate_mon.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/prog/validate_mon.cpp In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/ccp4.hpp:19, from /build/reproducible-path/gemmi-0.6.4+ds/prog/sfcalc.cpp:9: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ [ 97%] Building CXX object CMakeFiles/gemmi_prog.dir/prog/wcn.cpp.o /usr/bin/c++ -DGEMMI_ALL_IN_ONE=1 -I/build/reproducible-path/gemmi-0.6.4+ds/third_party -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/gemmi_prog.dir/prog/wcn.cpp.o -MF CMakeFiles/gemmi_prog.dir/prog/wcn.cpp.o.d -o CMakeFiles/gemmi_prog.dir/prog/wcn.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/prog/wcn.cpp In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/gz.hpp:13, from /build/reproducible-path/gemmi-0.6.4+ds/prog/validate.cpp:5: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ In file included from 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Dependencies file "CMakeFiles/gemmi_cpp.dir/src/align.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". make[5]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' make -f CMakeFiles/hello.dir/build.make CMakeFiles/hello.dir/build make[5]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' Dependencies file "CMakeFiles/gemmi_cpp.dir/src/assembly.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". make -f CMakeFiles/doc_example2.dir/build.make CMakeFiles/doc_example2.dir/build make -f CMakeFiles/cpptest.dir/build.make CMakeFiles/cpptest.dir/build make -f CMakeFiles/doc_example.dir/build.make CMakeFiles/doc_example.dir/build Dependencies file "CMakeFiles/gemmi_cpp.dir/src/calculate.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". make[5]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' make[5]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' Dependencies file "CMakeFiles/gemmi_cpp.dir/src/crd.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". make[5]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' make[5]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' Dependencies file "CMakeFiles/gemmi_cpp.dir/src/ddl.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_cpp.dir/compiler_depend.internal". 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CMakeFiles/doc_maybegz.dir/build.make CMakeFiles/doc_maybegz.dir/build make -f CMakeFiles/doc_newmtz.dir/build.make CMakeFiles/doc_newmtz.dir/build make[5]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' make[5]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' Dependencies file "CMakeFiles/gemmi_prog.dir/prog/align.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". make[5]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' make -f CMakeFiles/test_disulf.dir/build.make CMakeFiles/test_disulf.dir/build Dependencies file "CMakeFiles/gemmi_prog.dir/prog/blobs.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". make[5]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' make -f 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Dependencies file "CMakeFiles/gemmi_prog.dir/prog/contents.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/convert.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/diff.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/ecalc.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/fprime.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". [ 44%] Building CXX object CMakeFiles/doc_maybegz.dir/docs/code/mutate.cpp.o Dependencies file "CMakeFiles/gemmi_prog.dir/prog/grep.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". [ 44%] Building CXX object CMakeFiles/doc_maybegz.dir/docs/code/maybegz.cpp.o /usr/bin/c++ -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/doc_maybegz.dir/docs/code/mutate.cpp.o -MF CMakeFiles/doc_maybegz.dir/docs/code/mutate.cpp.o.d -o CMakeFiles/doc_maybegz.dir/docs/code/mutate.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/docs/code/mutate.cpp /usr/bin/c++ -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/doc_maybegz.dir/docs/code/maybegz.cpp.o -MF CMakeFiles/doc_maybegz.dir/docs/code/maybegz.cpp.o.d -o CMakeFiles/doc_maybegz.dir/docs/code/maybegz.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/docs/code/maybegz.cpp Dependencies file "CMakeFiles/gemmi_prog.dir/prog/h.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". 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[ 46%] Building CXX object CMakeFiles/doc_newmtz.dir/docs/code/newmtz.cpp.o Dependencies file "CMakeFiles/gemmi_prog.dir/prog/map2sf.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". /usr/bin/c++ -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/doc_newmtz.dir/docs/code/newmtz.cpp.o -MF CMakeFiles/doc_newmtz.dir/docs/code/newmtz.cpp.o.d -o CMakeFiles/doc_newmtz.dir/docs/code/newmtz.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/docs/code/newmtz.cpp Dependencies file "CMakeFiles/gemmi_prog.dir/prog/mapcoef.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". [ 48%] Building CXX object CMakeFiles/test_disulf.dir/tests/disulf.cpp.o Dependencies file "CMakeFiles/gemmi_prog.dir/prog/mask.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". /usr/bin/c++ -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/test_disulf.dir/tests/disulf.cpp.o -MF CMakeFiles/test_disulf.dir/tests/disulf.cpp.o.d -o CMakeFiles/test_disulf.dir/tests/disulf.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/tests/disulf.cpp [ 48%] Building CXX object CMakeFiles/check_conn.dir/examples/check_conn.cpp.o Dependencies file "CMakeFiles/gemmi_prog.dir/prog/merge.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". /usr/bin/c++ -I/build/reproducible-path/gemmi-0.6.4+ds/include -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17 -fvisibility=hidden -fvisibility-inlines-hidden -MD -MT CMakeFiles/check_conn.dir/examples/check_conn.cpp.o -MF CMakeFiles/check_conn.dir/examples/check_conn.cpp.o.d -o CMakeFiles/check_conn.dir/examples/check_conn.cpp.o -c /build/reproducible-path/gemmi-0.6.4+ds/examples/check_conn.cpp Dependencies file "CMakeFiles/gemmi_prog.dir/prog/mondiff.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/monlib_opt.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/mtz.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/mtz2cif.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/prep.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/reindex.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/residues.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/rmsz.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/sf2map.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/sfcalc.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/sg.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/tags.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/validate.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/validate_mon.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/wcn.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Dependencies file "CMakeFiles/gemmi_prog.dir/prog/xds2mtz.cpp.o.d" is newer than depends file "/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/gemmi_prog.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target gemmi_prog make[5]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' make -f CMakeFiles/gemmi_prog.dir/build.make CMakeFiles/gemmi_prog.dir/build make[5]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' make[5]: Nothing to be done for 'CMakeFiles/gemmi_prog.dir/build'. make[5]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' [ 91%] Built target gemmi_prog make -f CMakeFiles/print-version.dir/build.make CMakeFiles/print-version.dir/depend make[5]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' cd /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.6.4+ds /build/reproducible-path/gemmi-0.6.4+ds /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/print-version.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' make -f CMakeFiles/print-version.dir/build.make CMakeFiles/print-version.dir/build make[5]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' [ 91%] gemmi --version cd /build/reproducible-path/gemmi-0.6.4+ds && /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/gemmi --version gemmi 0.6.4 make[5]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' [ 91%] Built target print-version In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/mtz.hpp:23, from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/mtz2cif.hpp:14, from /build/reproducible-path/gemmi-0.6.4+ds/src/mtz2cif.cpp:3: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/mtz.hpp:23, from /build/reproducible-path/gemmi-0.6.4+ds/docs/code/newmtz.cpp:1: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/mtz.hpp:23, from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/merge.hpp:15, from /build/reproducible-path/gemmi-0.6.4+ds/tests/cif.cpp:6: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/json.hpp:19, from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/mmread.hpp:12, from /build/reproducible-path/gemmi-0.6.4+ds/docs/code/maybegz.cpp:2: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ In file included from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/json.hpp:19, from /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/mmread.hpp:12, from /build/reproducible-path/gemmi-0.6.4+ds/tests/disulf.cpp:11: /build/reproducible-path/gemmi-0.6.4+ds/include/gemmi/fileutil.hpp:37:58: warning: ignoring attributes on template argument 'int (*)(FILE*)' [-Wignored-attributes] 37 | typedef std::unique_ptr fileptr_t; | ^ [ 93%] Linking CXX executable doc_example /usr/bin/cmake -E cmake_link_script CMakeFiles/doc_example.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. 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Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' [ 95%] Built target hello [ 97%] Linking CXX executable check_conn /usr/bin/cmake -E cmake_link_script CMakeFiles/check_conn.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/check_conn.dir/examples/check_conn.cpp.o -o check_conn libgemmi_cpp.a /usr/lib/i386-linux-gnu/libz.so make[5]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' [ 97%] Built target check_conn [ 97%] Linking CXX executable cpptest /usr/bin/cmake -E cmake_link_script CMakeFiles/cpptest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/cpptest.dir/tests/main.cpp.o CMakeFiles/cpptest.dir/tests/cif.cpp.o CMakeFiles/cpptest.dir/src/mtz2cif.cpp.o CMakeFiles/cpptest.dir/src/eig3.cpp.o CMakeFiles/cpptest.dir/src/sprintf.cpp.o -o cpptest make[5]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' [ 97%] Built target cpptest [ 97%] Linking CXX executable doc_maybegz /usr/bin/cmake -E cmake_link_script CMakeFiles/doc_maybegz.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/doc_maybegz.dir/docs/code/maybegz.cpp.o CMakeFiles/doc_maybegz.dir/docs/code/mutate.cpp.o -o doc_maybegz libgemmi_cpp.a /usr/lib/i386-linux-gnu/libz.so make[5]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' [ 97%] Built target doc_maybegz [100%] Linking CXX executable test_disulf /usr/bin/cmake -E cmake_link_script CMakeFiles/test_disulf.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gemmi-0.6.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -fexcess-precision=fast -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro CMakeFiles/test_disulf.dir/tests/disulf.cpp.o -o test_disulf libgemmi_cpp.a /usr/lib/i386-linux-gnu/libz.so make[5]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' [100%] Built target test_disulf make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend make[5]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' cd /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gemmi-0.6.4+ds /build/reproducible-path/gemmi-0.6.4+ds /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles/check.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' make -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build make[5]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' /usr/bin/ctest -C None Test project /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu Start 1: cpptest 1/1 Test #1: cpptest .......................... Passed 0.00 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 0.01 sec make[5]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' [100%] Built target check make[4]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' make[2]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' PYTHONPATH=$(find . -name 'obj-*') pytest-3 -k 'not test_sfcalc_' ........................................................................ [ 38%] ............................s.................s......sssssssssssssss.... [ 76%] ............................................ [100%] =========================== short test summary info ============================ SKIPPED [1] tests/test_mol.py:535: BioPython not installed. SKIPPED [1] tests/test_monlib.py:110: $CLIBD_MON not defined. SKIPPED [1] tests/test_prog.py:121: Program gemmi not found. SKIPPED [1] tests/test_prog.py:130: Program gemmi not found. SKIPPED [1] tests/test_prog.py:139: Program gemmi not found. SKIPPED [1] tests/test_prog.py:47: Program gemmi not found. SKIPPED [1] tests/test_prog.py:55: Program gemmi not found. SKIPPED [1] tests/test_prog.py:62: Program gemmi not found. SKIPPED [1] tests/test_prog.py:68: Program gemmi not found. SKIPPED [1] tests/test_prog.py:74: Program gemmi not found. SKIPPED [1] tests/test_prog.py:80: Program gemmi not found. SKIPPED [1] tests/test_seq.py:127: BioPython not installed. SKIPPED [1] tests/test_seq.py:132: BioPython not installed. SKIPPED [1] tests/test_seq.py:139: BioPython not installed. SKIPPED [1] tests/test_seq.py:146: BioPython not installed. SKIPPED [1] tests/test_seq.py:105: BioPython not installed. SKIPPED [1] tests/test_seq.py:114: BioPython not installed. 171 passed, 17 skipped, 2 deselected in 1.70s make[1]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake cd obj-i686-linux-gnu && make -j22 install DESTDIR=/build/reproducible-path/gemmi-0.6.4\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/gemmi-0.6.4+ds -B/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/bin/gemmi -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/enumstr.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/levmar.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/smcif.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/reciproc.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/formfact.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/it92.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/linkhunt.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/mmcif_impl.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/atox.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/input.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/read_cif.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/solmask.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/interop.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/util.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/unitcell.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/to_chemcomp.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/model.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/pirfasta.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/qcp.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/json.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/iterator.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/mtz.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/contact.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/ddl.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/to_cif.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/refln.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/dencalc.hpp -- Installing: 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/build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/monlib.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/addends.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/ecalc.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/fprime.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/numb.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/assembly.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/topo.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/fileutil.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/math.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/mmread_gz.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/align.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/dirwalk.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/modify.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/remarks.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/cif.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/elem.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/sfcalc.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/mmcif.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/crd.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/grid.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/seqid.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/eig3.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/symmetry.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/mtz2cif.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/fourier.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/to_mmcif.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/fstream.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/chemcomp.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/seqalign.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/neutron92.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/bessel.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/cif2mtz.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/scaling.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/gz.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/neighbor.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/metadata.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/mmdb.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/to_pdb.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/asudata.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/twin.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/cifdoc.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/recgrid.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/utf.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/span.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/sprintf.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/calculate.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/bond_idx.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/seqtools.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/resinfo.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/mmread.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/c4322.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/riding_h.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/floodfill.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/read_map.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/select.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/atof.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/version.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/third_party -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/third_party/fast_float.h -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/third_party/tinydir.h -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/third_party/pocketfft_hdronly.h -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/third_party/sajson.h -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/polyheur.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/chemcomp_xyz.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/pdb.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/merge.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/include/gemmi/xds_ascii.hpp -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/lib/i386-linux-gnu/libgemmi_cpp.a -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/lib/i386-linux-gnu/cmake/gemmi/gemmi-targets.cmake -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/lib/i386-linux-gnu/cmake/gemmi/gemmi-targets-none.cmake -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/lib/i386-linux-gnu/cmake/gemmi/gemmi-config.cmake -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/lib/i386-linux-gnu/cmake/gemmi/gemmi-config-version.cmake -- Installing: /build/reproducible-path/gemmi-0.6.4+ds/debian/tmp/usr/lib/python3/dist-packages/gemmi.cpython-311-i386-linux-gnu.so make[1]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds/obj-i686-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/gemmi-0.6.4+ds' help2man 'tail -n +9 docs/gemmi-help.txt' \ --version-string 0.6.4+ds --name 'CLI for GEMMI library' \ --no-info --help-option '' > debian/gemmi.1 sed -i 's/.TH GEMMI-HELP.TXT/.TH gemmi/' debian/gemmi.1 sed -i 's/gemmi-help.txt/gemmi/' debian/gemmi.1 dh_installman make[1]: Leaving directory '/build/reproducible-path/gemmi-0.6.4+ds' dh_python3 -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dwz: debian/python3-gemmi/usr/lib/python3/dist-packages/gemmi.cpython-311-i386-linux-gnu.so: .debug_info section not present dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dpkg-gencontrol: warning: Provides field of package python3-gemmi: substitution variable ${python3:Provides} used, but is not defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'gemmi-dbgsym' in '../gemmi-dbgsym_0.6.4+ds-1_i386.deb'. dpkg-deb: building package 'gemmi-dev' in '../gemmi-dev_0.6.4+ds-1_i386.deb'. dpkg-deb: building package 'gemmi' in '../gemmi_0.6.4+ds-1_i386.deb'. dpkg-deb: building package 'python3-gemmi' in '../python3-gemmi_0.6.4+ds-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../gemmi_0.6.4+ds-1_i386.buildinfo dpkg-genchanges --build=binary -O../gemmi_0.6.4+ds-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/81448 and its subdirectories I: Current time: Tue Jun 10 07:41:14 -12 2025 I: pbuilder-time-stamp: 1749584474 Wed May 8 13:18:16 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos12-i386.debian.net. Wed May 8 13:18:16 UTC 2024 I: Preparing to do remote build '2' on ionos12-i386.debian.net. Wed May 8 13:31:15 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. Wed May 8 13:31:16 UTC 2024 I: gemmi_0.6.4+ds-1_i386.changes: Format: 1.8 Date: Tue, 19 Dec 2023 04:13:41 -0500 Source: gemmi Binary: gemmi gemmi-dbgsym gemmi-dev python3-gemmi Architecture: i386 Version: 0.6.4+ds-1 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Andrius Merkys Description: gemmi - library for structural biology - executable gemmi-dev - library for structural biology python3-gemmi - library for structural biology - Python module Changes: gemmi (0.6.4+ds-1) unstable; urgency=medium . * New upstream version 0.6.4+ds * Drop removed configuration option. Checksums-Sha1: 55d12373dddcdf4fedd8a20817c7e2d8889ce441 29807668 gemmi-dbgsym_0.6.4+ds-1_i386.deb dc9c2088e138b6384fe5e94db17f77743c20ed58 1174312 gemmi-dev_0.6.4+ds-1_i386.deb 876275ebbcf3869e72de748dfc1bd9fb8318ba1e 7917 gemmi_0.6.4+ds-1_i386.buildinfo 0258887a2f565c2502762abb026a962cf3aa95b2 1304816 gemmi_0.6.4+ds-1_i386.deb 69e61846481c2c8b7731f85a902845a32e545e98 2387972 python3-gemmi_0.6.4+ds-1_i386.deb Checksums-Sha256: 968f759be912af89561ae7ff8658317be241d1aa3e958c05b4fb0823e43e659c 29807668 gemmi-dbgsym_0.6.4+ds-1_i386.deb a6ac4425dd2d06354e32d53aa47897bec4ef79014e99a1c9ecd0278e9a8f1202 1174312 gemmi-dev_0.6.4+ds-1_i386.deb 5f7ac08cad1fc40cb2015ff07a4bdeaa382c1b9b868a513e218c25838f543abf 7917 gemmi_0.6.4+ds-1_i386.buildinfo c0be029691ae18800b29976e89b716a70d1d884cb717c561942528690bfcdc63 1304816 gemmi_0.6.4+ds-1_i386.deb 6cddeee0bd9c4ddafbd9771e9cf2e0cc66e12ee99b5f04e8c8c49384772210e8 2387972 python3-gemmi_0.6.4+ds-1_i386.deb Files: cc485198267e4c25f9c29ec5d4d218fd 29807668 debug optional gemmi-dbgsym_0.6.4+ds-1_i386.deb cbe65373b68db79e44185b5df31267ef 1174312 libdevel optional gemmi-dev_0.6.4+ds-1_i386.deb b6f6f710d581758a07287300c740b36b 7917 science optional gemmi_0.6.4+ds-1_i386.buildinfo 43896c307181f415b5dc2eacdf65654d 1304816 science optional gemmi_0.6.4+ds-1_i386.deb 3405b14a9f3efad4cd1fc53f07bd15a9 2387972 python optional python3-gemmi_0.6.4+ds-1_i386.deb Wed May 8 13:31:17 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_8-27323.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.5Ywlg3Sh/gemmi_0.6.4+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.5Ywlg3Sh/gemmi_0.6.4+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.5Ywlg3Sh/gemmi_0.6.4+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.5Ywlg3Sh/b1/gemmi_0.6.4+ds-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.5Ywlg3Sh/b2/gemmi_0.6.4+ds-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.733s) 0.733s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.380s) 0.380s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1.076s CPU time consumed: 1.075s Wed May 8 13:31:19 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Wed May 8 13:31:19 UTC 2024 I: gemmi from trixie built successfully and reproducibly on i386. Wed May 8 13:31:20 UTC 2024 I: Submitting .buildinfo files to external archives: Wed May 8 13:31:20 UTC 2024 I: Submitting 12K b1/gemmi_0.6.4+ds-1_i386.buildinfo.asc Wed May 8 13:31:21 UTC 2024 I: Submitting 12K b2/gemmi_0.6.4+ds-1_i386.buildinfo.asc Wed May 8 13:31:22 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed May 8 13:31:22 UTC 2024 I: Done submitting .buildinfo files. Wed May 8 13:31:22 UTC 2024 I: Removing signed gemmi_0.6.4+ds-1_i386.buildinfo.asc files: removed './b1/gemmi_0.6.4+ds-1_i386.buildinfo.asc' removed './b2/gemmi_0.6.4+ds-1_i386.buildinfo.asc'