Wed May 1 00:53:48 UTC 2024 I: starting to build fastqc/trixie/i386 on jenkins on '2024-05-01 00:53' Wed May 1 00:53:48 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_8/26764/console.log Wed May 1 00:53:48 UTC 2024 I: Downloading source for trixie/fastqc=0.12.1+dfsg-3 --2024-05-01 00:53:48-- http://deb.debian.org/debian/pool/main/f/fastqc/fastqc_0.12.1%2bdfsg-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2215 (2.2K) [text/prs.lines.tag] Saving to: ‘fastqc_0.12.1+dfsg-3.dsc’ 0K .. 100% 315M=0s 2024-05-01 00:53:48 (315 MB/s) - ‘fastqc_0.12.1+dfsg-3.dsc’ saved [2215/2215] Wed May 1 00:53:48 UTC 2024 I: fastqc_0.12.1+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: fastqc Binary: fastqc Architecture: all Version: 0.12.1+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille , Olivier Sallou Homepage: https://www.bioinformatics.babraham.ac.uk/projects/fastqc/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/fastqc Vcs-Git: https://salsa.debian.org/med-team/fastqc.git Testsuite: autopkgtest Testsuite-Triggers: unzip Build-Depends: debhelper-compat (= 13), javahelper, default-jdk, ant, libhtsjdk-java, libjbzip2-java, libcommons-math3-java, libsis-jhdf5-java Package-List: fastqc deb science optional arch=all Checksums-Sha1: e2e69ecdad67c0ea28a1f32822b1299b2025f812 303884 fastqc_0.12.1+dfsg.orig.tar.xz 23fe813b4a0bdd3727440e770aff0e4cf3ceffed 15360 fastqc_0.12.1+dfsg-3.debian.tar.xz Checksums-Sha256: e6ddc23aa7c2e45b99564e1bcb58b9ad173b9a529e306366c1037c7a2edbb1f5 303884 fastqc_0.12.1+dfsg.orig.tar.xz 2b383a73ff9ddbaa6954edd5a782dfbaf1dbb0c84b0d2ac4ab10a9f1a96093b1 15360 fastqc_0.12.1+dfsg-3.debian.tar.xz Files: 674cf57d8e899e286fc1a9fa88aba82f 303884 fastqc_0.12.1+dfsg.orig.tar.xz 267d1c8ed3428289f2d8dd2ccc2dc70e 15360 fastqc_0.12.1+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEE5Qr9Va3SequXFjqLIdIFiZdLPpYFAmSGUngUHHRtYW5jaWxs QGRlYmlhbi5vcmcACgkQIdIFiZdLPpbMQBAAnWKhsXB9zc/ZIiWEVLjGvGCws7xv rUMZfy5XjrZFwvVWtcB6BkvTxVpMRHQEcwL98P6/qL6WVdjR9RAYfZGRfZo3pgDP lX7qfkDSnptLctzmSMDC0dGkMTDOy77Krq7wPHu97zHhwyV9drPP9BIcRKEXmgvW mqGTtcNFLuaviCSgHGTiQFvvEJ640G7UpL+Lt4N/qFyiD7d44Grs8e9brc2tjA6a CTqdnFjwETV/gHzTFX8xMFSTcnuB/ZNu0XILzvZc/m9HMuxil5i8fA6xdKKqDSjK b/q23EUdBNJs/6Fj2ai3amo3SPCMDTBd67PehcWltEPovf/GPhg62wDgyEnl+rp6 uzaboI+klxcxVfh6oQ7WBe2wELB9Y07FXdSUYKvuAb9Gj9BOx26s1hBRi/w0bESv rE74hu6vcpg8snlqxU/oBgOiUdad8aV8Pyue2fTJMEvmuKMLP1HDcCN2aubE9xNF GV2OsTHMsVB7wDvJpTVvn3FRaW6PgtP3aGUYxGxLDfXPb2lr0X1Id+URJtqq4liS T6djToqw0EbfWh1YWUN4nqMyc4xqSaMfRZWsfEG6piZ0jtGOGShirNdOB7AtQs+d RqQ4DmtFBb2VI3SJp0vdbv/qm3RFBhjv1UA+m65CUyUb8SXmFxtDIU7b00DWEtDa fIVVMUX7nONnfLk= =kNk6 -----END PGP SIGNATURE----- Wed May 1 00:53:48 UTC 2024 I: Checking whether the package is not for us Wed May 1 00:53:48 UTC 2024 I: Starting 1st build on remote node ionos16-i386.debian.net. Wed May 1 00:53:48 UTC 2024 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Wed May 1 00:54:07 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jun 2 19:16:51 -12 2025 I: pbuilder-time-stamp: 1748935011 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [fastqc_0.12.1+dfsg-3.dsc] I: copying [./fastqc_0.12.1+dfsg.orig.tar.xz] I: copying [./fastqc_0.12.1+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Jun 11 23:02:16 2023 gpgv: using RSA key E50AFD55ADD27AAB97163A8B21D20589974B3E96 gpgv: issuer "tmancill@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fastqc_0.12.1+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting fastqc in fastqc-0.12.1+dfsg dpkg-source: info: unpacking fastqc_0.12.1+dfsg.orig.tar.xz dpkg-source: info: unpacking fastqc_0.12.1+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build_xml.patch dpkg-source: info: applying fastqc.patch dpkg-source: info: applying fix-help-call.patch dpkg-source: info: applying set_configuration_path.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/50301/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='8ee0d61d8a3f43f7a39fab4d21589761' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='50301' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZKOm0tTR/pbuilderrc_EDms --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZKOm0tTR/b1 --logfile b1/build.log fastqc_0.12.1+dfsg-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos16-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 27 17:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/50301/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), javahelper, default-jdk, ant, libhtsjdk-java, libjbzip2-java, libcommons-math3-java, libsis-jhdf5-java dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19709 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on javahelper; however: Package javahelper is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on ant; however: Package ant is not installed. pbuilder-satisfydepends-dummy depends on libhtsjdk-java; however: Package libhtsjdk-java is not installed. pbuilder-satisfydepends-dummy depends on libjbzip2-java; however: Package libjbzip2-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-math3-java; however: Package libcommons-math3-java is not installed. pbuilder-satisfydepends-dummy depends on libsis-jhdf5-java; however: Package libsis-jhdf5-java is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} file{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gnupg-utils{a} gpg{a} gpg-agent{a} gpg-wks-client{a} gpg-wks-server{a} gpgconf{a} gpgsm{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libassuan0{a} libcommons-math3-java{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libjbzip2-java{a} libksba8{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnpth0t64{a} libpipeline1{a} libreadline8t64{a} libsasl2-2{a} libsasl2-modules-db{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} pinentry-curses{a} po-debconf{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx wget 0 packages upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 30.0 MB of archives. After unpacking 94.3 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: javahelper but it is not installable Depends: default-jdk but it is not installable Depends: ant but it is not installable Depends: libhtsjdk-java but it is not installable Depends: libsis-jhdf5-java but it is not installable Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} file{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gnupg-utils{a} gpg{a} gpg-agent{a} gpg-wks-client{a} gpg-wks-server{a} gpgconf{a} gpgsm{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libassuan0{a} libcommons-math3-java{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libjbzip2-java{a} libksba8{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnpth0t64{a} libpipeline1{a} libreadline8t64{a} libsasl2-2{a} libsasl2-modules-db{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} pinentry-curses{a} po-debconf{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx wget 0 packages upgraded, 51 newly installed, 0 to remove and 0 not upgraded. Need to get 30.0 MB of archives. After unpacking 94.3 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/50301 and its subdirectories Wed May 1 00:54:08 UTC 2024 W: No second build log, what happened? Wed May 1 00:54:08 UTC 2024 W: Downloading the build dependencies failed Wed May 1 00:54:08 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Wed May 1 00:54:08 UTC 2024 W: Network problems are automatically rescheduled after some hours.