Thu Dec 5 10:56:01 UTC 2024 I: starting to build examl/trixie/i386 on jenkins on '2024-12-05 10:55' Thu Dec 5 10:56:01 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_8/51165/console.log Thu Dec 5 10:56:01 UTC 2024 I: Downloading source for trixie/examl=3.0.22-6 --2024-12-05 10:56:01-- http://deb.debian.org/debian/pool/main/e/examl/examl_3.0.22-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2169 (2.1K) [text/prs.lines.tag] Saving to: ‘examl_3.0.22-6.dsc’ 0K .. 100% 256M=0s 2024-12-05 10:56:01 (256 MB/s) - ‘examl_3.0.22-6.dsc’ saved [2169/2169] Thu Dec 5 10:56:01 UTC 2024 I: examl_3.0.22-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: examl Binary: examl Architecture: any Version: 3.0.22-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/stamatak/ExaML Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/examl Vcs-Git: https://salsa.debian.org/med-team/examl.git Testsuite: autopkgtest Testsuite-Triggers: pocl-opencl-icd Build-Depends: debhelper-compat (= 13), mpi-default-dev, libsimde-dev, debhelper Package-List: examl deb science optional arch=any Checksums-Sha1: fe8373864ad1825b8eab7c76317090bfc2a180f6 941388 examl_3.0.22.orig.tar.gz 2eb4eb55b5776b859bfd608cb3b1a54e02a29453 27400 examl_3.0.22-6.debian.tar.xz Checksums-Sha256: 802e673b0c2ea83fdbe6b060048d83f22b6978933a04be64fb9b4334fe318ca3 941388 examl_3.0.22.orig.tar.gz fb9f88cb18b9432cc189ede0992814a8e7fefc23be08c424dd493d45516ad8a2 27400 examl_3.0.22-6.debian.tar.xz Files: ad62d8c333cee316732c10f719c1e87c 941388 examl_3.0.22.orig.tar.gz 7600ccaf1fc6adee79b9d8ba1faa4019 27400 examl_3.0.22-6.debian.tar.xz Dgit: cf67f7995c7fce580d5d74e407dcee5ea5413d58 debian archive/debian/3.0.22-6 https://git.dgit.debian.org/examl -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmcvTCQUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpEHxAAwqb7CQ0/HWpREPdDMMoApeBgVEON K6LrwFYlJ59HboiZANie9VLebOyde00XU4mFo+sShgpviXNzUNbQPttKC+HOO6B7 E4j+7ZboT6tNVlCQ+9SZy7DssvXGzA30DKxVZtpEo2ETdr1Rbt8JvARZKH9auB7z 01g40Iopb+WXqmQuDajeBRuXdUehRKf8uKGEZsmxZ+d++JzLE/kfVRtIs6N/H+L3 S/uuPNu7Y0uYtz66R/NxXnc2ggHW2cF8Ixy0gLwE85LPf37ajanW1mIVTfzyxUVT pfNKsaDHP9woRQ02e3cmrG5gHqXGLTUBo6Aw2tzHo0RNvIFz3km8ijVwYgGAAaQp 9gCM4RuUDrV/P7ipOeDP6IV1W5okZrvKWfYxWakux+EDGgac5b2TKqVlkn+xsjfa Z/+phiOJDfJTa/JnezjvqBmPgwXCKuznCy2AdkehkZ0gJWOJ3ijMEHqPbzqEwq2M M2/S1RJ4ZLghHelbT/VmX+aDng1sKHub7uHolBvMT3wDJiiYsaEPRcIJmsl86pFJ Ybdis6QRNsKlx/CAdWSsd0u3BV0RJEqMf8qwYpx8K6IdufFibudQxcgGgAGNOQE4 N/5Zjr6dFdfkxc5xguJCozkALphziXyra43nU3u0Jt7k2VJzPX+XQu4rTOfz1INq gLdPIDXeEYn0Rvg= =YC// -----END PGP SIGNATURE----- Thu Dec 5 10:56:01 UTC 2024 I: Checking whether the package is not for us Thu Dec 5 10:56:01 UTC 2024 I: Starting 1st build on remote node ionos16-i386.debian.net. Thu Dec 5 10:56:01 UTC 2024 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Thu Dec 5 11:04:05 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jan 7 05:19:03 -12 2026 I: pbuilder-time-stamp: 1767806343 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [examl_3.0.22-6.dsc] I: copying [./examl_3.0.22.orig.tar.gz] I: copying [./examl_3.0.22-6.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Nov 9 11:48:52 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./examl_3.0.22-6.dsc: no acceptable signature found dpkg-source: info: extracting examl in examl-3.0.22 dpkg-source: info: unpacking examl_3.0.22.orig.tar.gz dpkg-source: info: unpacking examl_3.0.22-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying simde dpkg-source: info: applying fix_implicit_declaration.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/11013/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='023f89fd245847249be9714a75ec1924' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='11013' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BW82mU86/pbuilderrc_CkGu --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BW82mU86/b1 --logfile b1/build.log examl_3.0.22-6.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos16-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/11013/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), mpi-default-dev, libsimde-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} groff-base{a} hwloc-nox{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgfortran-14-dev{a} libgfortran5{a} libhwloc-dev{a} libhwloc15{a} libicu72{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libmpich-dev{a} libmpich12{a} libnuma-dev{a} libnuma1{a} libpipeline1{a} libsimde-dev{a} libslurm41t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mpi-default-dev{a} mpich{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libhwloc-plugins libmail-sendmail-perl lynx wget 0 packages upgraded, 46 newly installed, 0 to remove and 0 not upgraded. Need to get 40.9 MB of archives. After unpacking 161 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-11 [95.6 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5+b1 [9583 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14.2.0-8 [735 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libgfortran-14-dev i386 14.2.0-8 [800 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 gfortran-14-i686-linux-gnu i386 14.2.0-8 [12.5 MB] Get: 33 http://deb.debian.org/debian trixie/main i386 gfortran-14 i386 14.2.0-8 [12.2 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 libhwloc15 i386 2.11.2-1 [177 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 hwloc-nox i386 2.11.2-1 [229 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libnuma1 i386 2.0.18-1+b1 [23.9 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libnuma-dev i386 2.0.18-1+b1 [38.8 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 libltdl7 i386 2.4.7-8 [395 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libltdl-dev i386 2.4.7-8 [167 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libhwloc-dev i386 2.11.2-1 [271 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libmpich12 i386 4.2.0-14 [1518 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libslurm41t64 i386 24.05.4-1 [739 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 mpich i386 4.2.0-14 [235 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libmpich-dev i386 4.2.0-14 [2494 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libsimde-dev all 0.8.2-2 [467 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 mpi-default-dev i386 1.17 [3144 B] Fetched 40.9 MB in 2s (16.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_i386.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../21-libelf1t64_0.192-4_i386.deb ... Unpacking libelf1t64:i386 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../23-libicu72_72.1-5+b1_i386.deb ... Unpacking libicu72:i386 (72.1-5+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_i386.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../29-libgfortran5_14.2.0-8_i386.deb ... Unpacking libgfortran5:i386 (14.2.0-8) ... Selecting previously unselected package libgfortran-14-dev:i386. Preparing to unpack .../30-libgfortran-14-dev_14.2.0-8_i386.deb ... Unpacking libgfortran-14-dev:i386 (14.2.0-8) ... Selecting previously unselected package gfortran-14-i686-linux-gnu. Preparing to unpack .../31-gfortran-14-i686-linux-gnu_14.2.0-8_i386.deb ... Unpacking gfortran-14-i686-linux-gnu (14.2.0-8) ... Selecting previously unselected package gfortran-14. Preparing to unpack .../32-gfortran-14_14.2.0-8_i386.deb ... Unpacking gfortran-14 (14.2.0-8) ... 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Unpacking mpi-default-dev (1.17) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libsimde-dev (0.8.2-2) ... Setting up libicu72:i386 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libhwloc15:i386 (2.11.2-1) ... Setting up autopoint (0.22.5-2) ... Setting up libltdl7:i386 (2.4.7-8) ... Setting up libgfortran5:i386 (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up libnuma1:i386 (2.0.18-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up libmpich12:i386 (4.2.0-14) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up libslurm41t64 (24.05.4-1) ... 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Setting up mpich (4.2.0-14) ... update-alternatives: using /usr/bin/mpicc.mpich to provide /usr/bin/mpicc (mpi) in auto mode update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun (mpirun) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libmpich-dev:i386 (4.2.0-14) ... update-alternatives: using /usr/include/i386-linux-gnu/mpich to provide /usr/include/i386-linux-gnu/mpi (mpi-i386-linux-gnu) in auto mode Setting up mpi-default-dev (1.17) ... Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/examl-3.0.22/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../examl_3.0.22-6_source.changes dpkg-buildpackage: info: source package examl dpkg-buildpackage: info: source version 3.0.22-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --sourcedirectory=examl debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/examl-3.0.22' for SIMD in ssse3 sse3 sse2 sse mmx; do \ dh_auto_clean -- SFX=-${SIMD} ; \ /usr/bin/make --directory=parser -f Makefile.SSE3.gcc SFX=-${SIMD} clean ; \ done make[2]: Entering directory '/build/reproducible-path/examl-3.0.22/parser' rm -f *.o parse-examl-ssse3 make[2]: Leaving directory '/build/reproducible-path/examl-3.0.22/parser' make[2]: Entering directory '/build/reproducible-path/examl-3.0.22/parser' rm -f *.o parse-examl-sse3 make[2]: Leaving directory '/build/reproducible-path/examl-3.0.22/parser' make[2]: Entering directory '/build/reproducible-path/examl-3.0.22/parser' rm -f *.o parse-examl-sse2 make[2]: Leaving directory '/build/reproducible-path/examl-3.0.22/parser' make[2]: Entering directory '/build/reproducible-path/examl-3.0.22/parser' rm -f *.o parse-examl-sse make[2]: Leaving directory '/build/reproducible-path/examl-3.0.22/parser' make[2]: Entering directory '/build/reproducible-path/examl-3.0.22/parser' rm -f *.o parse-examl-mmx make[2]: Leaving directory '/build/reproducible-path/examl-3.0.22/parser' dh_auto_clean /usr/bin/make --directory=parser -f Makefile.SSE3.gcc clean make[2]: Entering directory '/build/reproducible-path/examl-3.0.22/parser' rm -f *.o parse-examl"" make[2]: Leaving directory '/build/reproducible-path/examl-3.0.22/parser' find examl -executable -type f -delete make[1]: Leaving directory '/build/reproducible-path/examl-3.0.22' dh_autoreconf_clean -O--sourcedirectory=examl dh_clean -O--sourcedirectory=examl debian/rules binary dh binary --sourcedirectory=examl dh_update_autotools_config -O--sourcedirectory=examl dh_autoreconf -O--sourcedirectory=examl dh_auto_configure -O--sourcedirectory=examl debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/examl-3.0.22' dh_auto_build for SIMD in ssse3 sse3 sse2 sse mmx; do \ /usr/bin/make --directory=examl -f Makefile.AVX.gcc SFX=-${SIMD} CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -m${SIMD}" ; \ /usr/bin/make --directory=examl -f Makefile.OMP.AVX.gcc SFX=-${SIMD} CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -m${SIMD}" ; \ find . -name '*.o' -delete ; \ done make[2]: Entering directory '/build/reproducible-path/examl-3.0.22/examl' rm -f *.o examl-ssse3 mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c In function ‘initializePartitions’, inlined from ‘initializeTree’ at axml.c:2217:3, inlined from ‘main’ at axml.c:2631:5: axml.c:2121:40: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from axml.c:44: /usr/include/stdlib.h: In function ‘main’: /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c avxLikelihood.c: In function ‘hadd4’: avxLikelihood.c:33:1: warning: AVX vector return without AVX enabled changes the ABI [-Wpsabi] 33 | { | ^ mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c partitionAssignment.c: In function ‘printAssignment’: partitionAssignment.c:457:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid); | ~~^ ~~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c:457:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid); | ~~^ ~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c: In function ‘printAssignments’: partitionAssignment.c:470:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId); | ~~^ ~~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c:470:30: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId); | ~~^ ~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c: In function ‘printLoad’: partitionAssignment.c:498:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 498 | printf("%d\t%d\t%lu\n", i, numsPerProc[i], sitesPerProc[i]); | ~~^ ~~~~~~~~~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c mpicc -o examl-ssse3 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/examl-3.0.22/examl' make[2]: Entering directory '/build/reproducible-path/examl-3.0.22/examl' mpicc -o examl-OMP-ssse3 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/examl-3.0.22/examl' make[2]: Entering directory '/build/reproducible-path/examl-3.0.22/examl' rm -f *.o examl-sse3 mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c In function ‘initializePartitions’, inlined from ‘initializeTree’ at axml.c:2217:3, inlined from ‘main’ at axml.c:2631:5: axml.c:2121:40: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from axml.c:44: /usr/include/stdlib.h: In function ‘main’: /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c avxLikelihood.c: In function ‘hadd4’: avxLikelihood.c:33:1: warning: AVX vector return without AVX enabled changes the ABI [-Wpsabi] 33 | { | ^ mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c partitionAssignment.c: In function ‘printAssignment’: partitionAssignment.c:457:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid); | ~~^ ~~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c:457:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid); | ~~^ ~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c: In function ‘printAssignments’: partitionAssignment.c:470:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId); | ~~^ ~~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c:470:30: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId); | ~~^ ~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c: In function ‘printLoad’: partitionAssignment.c:498:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 498 | printf("%d\t%d\t%lu\n", i, numsPerProc[i], sitesPerProc[i]); | ~~^ ~~~~~~~~~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c mpicc -o examl-sse3 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/examl-3.0.22/examl' make[2]: Entering directory '/build/reproducible-path/examl-3.0.22/examl' mpicc -o examl-OMP-sse3 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/examl-3.0.22/examl' make[2]: Entering directory '/build/reproducible-path/examl-3.0.22/examl' rm -f *.o examl-sse2 mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c In function ‘initializePartitions’, inlined from ‘initializeTree’ at axml.c:2217:3, inlined from ‘main’ at axml.c:2631:5: axml.c:2121:40: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from axml.c:44: /usr/include/stdlib.h: In function ‘main’: /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c avxLikelihood.c: In function ‘hadd4’: avxLikelihood.c:33:1: warning: AVX vector return without AVX enabled changes the ABI [-Wpsabi] 33 | { | ^ mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c partitionAssignment.c: In function ‘printAssignment’: partitionAssignment.c:457:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid); | ~~^ ~~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c:457:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid); | ~~^ ~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c: In function ‘printAssignments’: partitionAssignment.c:470:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId); | ~~^ ~~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c:470:30: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId); | ~~^ ~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c: In function ‘printLoad’: partitionAssignment.c:498:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 498 | printf("%d\t%d\t%lu\n", i, numsPerProc[i], sitesPerProc[i]); | ~~^ ~~~~~~~~~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c mpicc -o examl-sse2 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/examl-3.0.22/examl' make[2]: Entering directory '/build/reproducible-path/examl-3.0.22/examl' mpicc -o examl-OMP-sse2 axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/examl-3.0.22/examl' make[2]: Entering directory '/build/reproducible-path/examl-3.0.22/examl' rm -f *.o examl-sse mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c In function ‘initializePartitions’, inlined from ‘initializeTree’ at axml.c:2217:3, inlined from ‘main’ at axml.c:2631:5: axml.c:2121:40: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from axml.c:44: /usr/include/stdlib.h: In function ‘main’: /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c avxLikelihood.c: In function ‘hadd4’: avxLikelihood.c:33:1: warning: AVX vector return without AVX enabled changes the ABI [-Wpsabi] 33 | { | ^ mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c partitionAssignment.c: In function ‘printAssignment’: partitionAssignment.c:457:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid); | ~~^ ~~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c:457:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid); | ~~^ ~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c: In function ‘printAssignments’: partitionAssignment.c:470:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId); | ~~^ ~~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c:470:30: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId); | ~~^ ~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c: In function ‘printLoad’: partitionAssignment.c:498:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 498 | printf("%d\t%d\t%lu\n", i, numsPerProc[i], sitesPerProc[i]); | ~~^ ~~~~~~~~~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c mpicc -o examl-sse axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/examl-3.0.22/examl' make[2]: Entering directory '/build/reproducible-path/examl-3.0.22/examl' mpicc -o examl-OMP-sse axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/examl-3.0.22/examl' make[2]: Entering directory '/build/reproducible-path/examl-3.0.22/examl' rm -f *.o examl-mmx mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c In function ‘initializePartitions’, inlined from ‘initializeTree’ at axml.c:2217:3, inlined from ‘main’ at axml.c:2631:5: axml.c:2121:40: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from axml.c:44: /usr/include/stdlib.h: In function ‘main’: /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c evaluatePartialGenericSpecial.c: In function ‘computeVectorGTRCATPROT’: evaluatePartialGenericSpecial.c:356:17: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 356 | __m128d d1v = _mm_mul_pd(_mm_load_pd(&x1[l]), _mm_load_pd(&e1[l])); | ^~~ mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c newviewGenericSpecial.c: In function ‘newviewGTRCAT_BINARY’: newviewGenericSpecial.c:1011:25: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 1011 | __m128d al = _mm_mul_pd(_mm_load_pd(x1), _mm_load_pd(&le[l * 2])); | ^~ mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c makenewzGenericSpecial.c: In function ‘sumGTRCATPROT_SAVE’: makenewzGenericSpecial.c:1806:23: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 1806 | __m128d sumv = _mm_mul_pd(_mm_load_pd(&left[l]), _mm_load_pd(&right[l])); | ^~~~ mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c avxLikelihood.c: In function ‘hadd4’: avxLikelihood.c:33:1: warning: AVX vector return without AVX enabled changes the ABI [-Wpsabi] 33 | { | ^ avxLikelihood.c: In function ‘simde__m128i_from_private’: avxLikelihood.c:4051:1: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 4051 | } | ^ mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c partitionAssignment.c: In function ‘printAssignment’: partitionAssignment.c:457:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid); | ~~^ ~~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c:457:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid); | ~~^ ~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c: In function ‘printAssignments’: partitionAssignment.c:470:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId); | ~~^ ~~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c:470:30: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId); | ~~^ ~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c: In function ‘printLoad’: partitionAssignment.c:498:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 498 | printf("%d\t%d\t%lu\n", i, numsPerProc[i], sitesPerProc[i]); | ~~^ ~~~~~~~~~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c mpicc -o examl-mmx axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/examl-3.0.22/examl' make[2]: Entering directory '/build/reproducible-path/examl-3.0.22/examl' mpicc -o examl-OMP-mmx axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/examl-3.0.22/examl' for SIMD in sse mmx; do \ /usr/bin/make --directory=parser -f Makefile.SSE3.gcc SFX=-${SIMD} CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -m${SIMD}" ; \ find . -name '*.o' -delete ; \ done make[2]: Entering directory '/build/reproducible-path/examl-3.0.22/parser' rm -f *.o parse-examl-sse gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -msse -Wdate-time -D_FORTIFY_SOURCE=2 -c -o parsePartitions.o parsePartitions.c gcc -o parse-examl-sse axml.o parsePartitions.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/examl-3.0.22/parser' make[2]: Entering directory '/build/reproducible-path/examl-3.0.22/parser' rm -f *.o parse-examl-mmx gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -mmmx -Wdate-time -D_FORTIFY_SOURCE=2 -c -o parsePartitions.o parsePartitions.c gcc -o parse-examl-mmx axml.o parsePartitions.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/examl-3.0.22/parser' /usr/bin/make --directory=examl -f Makefile.AVX.gcc make[2]: Entering directory '/build/reproducible-path/examl-3.0.22/examl' rm -f *.o examl"" mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c In function ‘initializePartitions’, inlined from ‘initializeTree’ at axml.c:2217:3, inlined from ‘main’ at axml.c:2631:5: axml.c:2121:40: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2121 | *modelWeights = (unsigned long*) calloc(tr->NumberOfModels, sizeof(unsigned long)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from axml.c:44: /usr/include/stdlib.h: In function ‘main’: /usr/include/stdlib.h:675:14: note: in a call to allocation function ‘calloc’ declared here 675 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o optimizeModel.o optimizeModel.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o trash.o trash.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o searchAlgo.o searchAlgo.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o topologies.o topologies.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o treeIO.o treeIO.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o models.o models.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c evaluatePartialGenericSpecial.c: In function ‘computeVectorGTRCATPROT’: evaluatePartialGenericSpecial.c:356:17: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 356 | __m128d d1v = _mm_mul_pd(_mm_load_pd(&x1[l]), _mm_load_pd(&e1[l])); | ^~~ mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c evaluateGenericSpecial.c: In function ‘evaluateGTRGAMMA_BINARY’: evaluateGenericSpecial.c:1090:17: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 1090 | termv = _mm_set1_pd(0.0); | ^ mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c newviewGenericSpecial.c: In function ‘newviewGTRCAT_BINARY’: newviewGenericSpecial.c:1011:25: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 1011 | __m128d al = _mm_mul_pd(_mm_load_pd(x1), _mm_load_pd(&le[l * 2])); | ^~ mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c makenewzGenericSpecial.c: In function ‘sumGTRCATPROT_SAVE’: makenewzGenericSpecial.c:1806:23: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 1806 | __m128d sumv = _mm_mul_pd(_mm_load_pd(&left[l]), _mm_load_pd(&right[l])); | ^~~~ mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bipartitionList.o bipartitionList.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restartHashTable.o restartHashTable.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o avxLikelihood.o avxLikelihood.c avxLikelihood.c: In function ‘hadd4’: avxLikelihood.c:33:1: warning: AVX vector return without AVX enabled changes the ABI [-Wpsabi] 33 | { | ^ avxLikelihood.c: In function ‘simde__m128i_from_private’: avxLikelihood.c:4051:1: warning: SSE vector return without SSE enabled changes the ABI [-Wpsabi] 4051 | } | ^ avxLikelihood.c: In function ‘hadd4’: avxLikelihood.c:32:23: note: the ABI for passing parameters with 32-byte alignment has changed in GCC 4.6 32 | static inline __m256d hadd4(__m256d v, __m256d u) | ^~~~~ avxLikelihood.c:32:23: warning: AVX vector argument without AVX enabled changes the ABI [-Wpsabi] mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o byteFile.o byteFile.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o partitionAssignment.o partitionAssignment.c partitionAssignment.c: In function ‘printAssignment’: partitionAssignment.c:457:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid); | ~~^ ~~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c:457:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 457 | printf("p: %d\t(%lu,%lu) -> proc %d\n", a.partId, a.offset, a.width , procid); | ~~^ ~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c: In function ‘printAssignments’: partitionAssignment.c:470:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId); | ~~^ ~~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c:470:30: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 470 | printf("%d\t%lu\t%lu\t%d\n", i,a.offset, a.width, a.partId); | ~~^ ~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u partitionAssignment.c: In function ‘printLoad’: partitionAssignment.c:498:23: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 498 | printf("%d\t%d\t%lu\n", i, numsPerProc[i], sitesPerProc[i]); | ~~^ ~~~~~~~~~~~~~~~ | | | | long unsigned int size_t {aka unsigned int} | %u mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o communication.o communication.c mpicc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -D_OPTIMIZED_FUNCTIONS -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -D_USE_ALLREDUCE -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o quartets.o quartets.c mpicc -o examl"" axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/examl-3.0.22/examl' /usr/bin/make --directory=examl -f Makefile.OMP.AVX.gcc make[2]: Entering directory '/build/reproducible-path/examl-3.0.22/examl' mpicc -o examl-OMP"" axml.o optimizeModel.o trash.o searchAlgo.o topologies.o treeIO.o models.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o bipartitionList.o restartHashTable.o avxLikelihood.o byteFile.o partitionAssignment.o communication.o quartets.o -lm -fopenmp -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/examl-3.0.22/examl' /usr/bin/make --directory=parser -f Makefile.SSE3.gcc make[2]: Entering directory '/build/reproducible-path/examl-3.0.22/parser' rm -f *.o parse-examl"" gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -O2 -D_GNU_SOURCE -funroll-loops -Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable -Wformat -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -Wbad-function-cast -Wdate-time -D_FORTIFY_SOURCE=2 -c -o axml.o axml.c axml.c: In function ‘genericBaseFrequencies’: axml.c:2509:26: warning: comparison is always true due to limited range of data type [-Wtype-limits] 2509 | if(yptr[j] >= 0 && yptr[j] < 20) | ^~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/examl-3.0.22=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fomit-frame-pointer -O2 -D_GNU_SOURCE -funroll-loops -Wall -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable -Wformat -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -Wbad-function-cast -Wdate-time -D_FORTIFY_SOURCE=2 -c -o parsePartitions.o parsePartitions.c gcc -o parse-examl"" axml.o parsePartitions.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/reproducible-path/examl-3.0.22/parser' make[1]: Leaving directory '/build/reproducible-path/examl-3.0.22' dh_auto_test -O--sourcedirectory=examl create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=examl dh_prep -O--sourcedirectory=examl debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/examl-3.0.22' dh_install debian/bin/simd-dispatch /usr/lib/examl/bin dh_install examl/examl* parser/parse-examl* /usr/lib/examl/bin/ mkdir -p /build/reproducible-path/examl-3.0.22/debian/examl/usr/bin cd /build/reproducible-path/examl-3.0.22/debian/examl/usr/bin \ && for prog in examl examl-OMP parse-examl ; do \ ln -s ../lib/examl/bin/simd-dispatch ${prog} ; done make[1]: Leaving directory '/build/reproducible-path/examl-3.0.22' dh_installdocs -O--sourcedirectory=examl dh_installchangelogs -O--sourcedirectory=examl dh_installman -O--sourcedirectory=examl dh_installsystemduser -O--sourcedirectory=examl dh_perl -O--sourcedirectory=examl dh_link -O--sourcedirectory=examl dh_strip_nondeterminism -O--sourcedirectory=examl dh_compress -O--sourcedirectory=examl dh_fixperms -O--sourcedirectory=examl dh_missing -O--sourcedirectory=examl dh_dwz -a -O--sourcedirectory=examl dh_strip -a -O--sourcedirectory=examl dh_makeshlibs -a -O--sourcedirectory=examl dh_shlibdeps -a -O--sourcedirectory=examl dh_installdeb -O--sourcedirectory=examl debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/examl-3.0.22' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.8.2-2), " make[1]: Leaving directory '/build/reproducible-path/examl-3.0.22' dh_md5sums -O--sourcedirectory=examl dh_builddeb -O--sourcedirectory=examl dpkg-deb: building package 'examl-dbgsym' in '../examl-dbgsym_3.0.22-6_i386.deb'. dpkg-deb: building package 'examl' in '../examl_3.0.22-6_i386.deb'. dpkg-genbuildinfo --build=binary -O../examl_3.0.22-6_i386.buildinfo dpkg-genchanges --build=binary -O../examl_3.0.22-6_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/11013 and its subdirectories I: Current time: Wed Jan 7 05:27:01 -12 2026 I: pbuilder-time-stamp: 1767806821 Thu Dec 5 11:04:05 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos12-i386.debian.net. Thu Dec 5 11:04:05 UTC 2024 I: Preparing to do remote build '2' on ionos12-i386.debian.net. Thu Dec 5 11:09:23 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. Thu Dec 5 11:09:23 UTC 2024 I: examl_3.0.22-6_i386.changes: Format: 1.8 Date: Sat, 09 Nov 2024 12:07:58 +0100 Source: examl Binary: examl examl-dbgsym Architecture: i386 Version: 3.0.22-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: examl - Exascale Maximum Likelihood (ExaML) code for phylogenetic inferen Closes: 1084904 1086909 Changes: examl (3.0.22-6) unstable; urgency=medium . * d/control: migrate to mpi-default-* (Closes: #1084904, #1086909) * d/patches/*: normalize dep3 header, notably Last-Update timestamp. * d/control: add myself to uploaders. Checksums-Sha1: d307e3472d3e40a7606a7040c5f81d05b4cc4e5b 2595804 examl-dbgsym_3.0.22-6_i386.deb fb9cf4ec443cd5ad3febc43c6727ee5e2e53e77c 5428 examl_3.0.22-6_i386.buildinfo 8e808ceb01844c2efbad3f0d54328b28c20b4bd3 1104176 examl_3.0.22-6_i386.deb Checksums-Sha256: 7603f2f2574cbeb46cb43248af6f3b596d6ef451ec902f8d83a3eb4d1d380f53 2595804 examl-dbgsym_3.0.22-6_i386.deb 5679496869b5392ac555c9fdd3953f74a4a0f7dba746cfea94593795a5f78188 5428 examl_3.0.22-6_i386.buildinfo 0603c81faef6b22e1a213c86af5bc6281f3ecea66b78a5948c98e06e1d8875bb 1104176 examl_3.0.22-6_i386.deb Files: 5dd892467658ed667ac155a8eb0baf89 2595804 debug optional examl-dbgsym_3.0.22-6_i386.deb 38a725dcc7fb2d3bedfe5e79e2b648b8 5428 science optional examl_3.0.22-6_i386.buildinfo e9cc9019f5642dfe542a8b6e4abed75b 1104176 science optional examl_3.0.22-6_i386.deb Thu Dec 5 11:09:24 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_8-51165.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.BW82mU86/examl_3.0.22-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.BW82mU86/examl_3.0.22-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.BW82mU86/examl_3.0.22-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.BW82mU86/b1/examl_3.0.22-6_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.BW82mU86/b2/examl_3.0.22-6_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.453s) 0.453s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.061s) 0.061s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 894ms CPU time consumed: 896ms Thu Dec 5 11:09:26 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Thu Dec 5 11:09:26 UTC 2024 I: examl from trixie built successfully and reproducibly on i386. Thu Dec 5 11:09:27 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Dec 5 11:09:27 UTC 2024 I: Submitting 8.0K b1/examl_3.0.22-6_i386.buildinfo.asc Thu Dec 5 11:09:28 UTC 2024 I: Submitting 8.0K b2/examl_3.0.22-6_i386.buildinfo.asc Thu Dec 5 11:09:28 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Dec 5 11:09:28 UTC 2024 I: Done submitting .buildinfo files. Thu Dec 5 11:09:28 UTC 2024 I: Removing signed examl_3.0.22-6_i386.buildinfo.asc files: removed './b1/examl_3.0.22-6_i386.buildinfo.asc' removed './b2/examl_3.0.22-6_i386.buildinfo.asc'