Sun Oct 27 16:25:49 UTC 2024 I: starting to build dcmstack/trixie/i386 on jenkins on '2024-10-27 16:25' Sun Oct 27 16:25:49 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_17/25682/console.log Sun Oct 27 16:25:49 UTC 2024 I: Downloading source for trixie/dcmstack=0.9-3 --2024-10-27 16:25:49-- http://deb.debian.org/debian/pool/main/d/dcmstack/dcmstack_0.9-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2370 (2.3K) [text/prs.lines.tag] Saving to: ‘dcmstack_0.9-3.dsc’ 0K .. 100% 235M=0s 2024-10-27 16:25:49 (235 MB/s) - ‘dcmstack_0.9-3.dsc’ saved [2370/2370] Sun Oct 27 16:25:49 UTC 2024 I: dcmstack_0.9-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: dcmstack Binary: python3-dcmstack Architecture: all Version: 0.9-3 Maintainer: Debian Med Packaging Team Uploaders: Michael Hanke , Yaroslav Halchenko , Étienne Mollier Homepage: https://github.com/moloney/dcmstack Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/dcmstack Vcs-Git: https://salsa.debian.org/med-team/dcmstack.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-pytest Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-dicom, python3-docutils, python3-nibabel, python3-numpy, python3-numpydoc, python3-pytest, python3-setuptools, python3-sphinx Package-List: python3-dcmstack deb science optional arch=all Checksums-Sha1: b154497810ea944f55a5084ffdae7062b1c86f7f 1739820 dcmstack_0.9.orig.tar.gz 77ef30b435ccc1c26001ad3768f85d61bd5cceec 7160 dcmstack_0.9-3.debian.tar.xz Checksums-Sha256: 1360ce521bbbf3ebb15c2189ac4605b54fdcc4f05e7bb756947d8047794a9aee 1739820 dcmstack_0.9.orig.tar.gz 5f31c568b892f0126683169aadb57413d5c88b34cc7cc17a47e70bed5f94a318 7160 dcmstack_0.9-3.debian.tar.xz Files: 1c1e05f42da6df9366767d22e5ef8737 1739820 dcmstack_0.9.orig.tar.gz f3242a87636db34619c07f45b145b6cb 7160 dcmstack_0.9-3.debian.tar.xz Dgit: 2e67de9c2ec0c999ef3b5b36b767cf8efd6db131 debian archive/debian/0.9-3 https://git.dgit.debian.org/dcmstack -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmZaJdAUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrUGBAAnSXYQNu8WTG3o48UlypoQnhPiCJb vXtpxUKz4+H9I3boTSK5MeUQ9zCYvgaP+AqX5oKf/XYbdoWU2NgeIxHvTcEOIwbI BLqUFyhgnQ+NSQUdOwtrpnM0fY8bQIo3tI20HGq1Om/fziIxL3RAlhjgZBYbOM+1 9X8j2Y9RBJIy5EK70R8a8WVX/P5/hYFQGaCM8NP8jxAfA7wyBqQhtX02KFHc+SEJ qFWTFr83CYr7OKMYfSTWripMDji+gSc6wb6wsqPqBy+bVS3xsPfSZqTIwZDUgPxo b8Ljs8vPn27u4wGgvu6i9i5H5hVTcpoyZoL4OjD24stPOmlezVeCd9I/55F22Fif KV/WG1CR+Our52b83JpBQrYKGngblCjcu3UhbuNv6mwZISBEmJuzKkYYnGCtwBLQ 4TOjllwYML2YTLnogI7+dXiLr7LYBNGhraqxMoKDbjADWvvbQB9nUiHnlxKIywI/ flitcNvLoDguubZg5omnfRDNgjuvbMq45SoGGfLXdRAXMp1YI70o2NlE9TDur2Kc 122PXzKJdpmx2vEgywCnretP5xxk4d9N/MxjZRTlf+TtQ7S54k9eRK2NMPkHnhLy 6AMR9OJLngrH5vSFPYczFfdMw2pzf3gjvgX3VmGpisM8QyYoTqypFPLuZZALpdDT 2W6ljm5yVIoM780= =atHV -----END PGP SIGNATURE----- Sun Oct 27 16:25:49 UTC 2024 I: Checking whether the package is not for us Sun Oct 27 16:25:49 UTC 2024 I: Starting 1st build on remote node infom07-i386.debian.net. Sun Oct 27 16:25:49 UTC 2024 I: Preparing to do remote build '1' on infom07-i386.debian.net. Sun Oct 27 16:27:25 UTC 2024 I: Deleting $TMPDIR on infom07-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Oct 27 04:25:52 -12 2024 I: pbuilder-time-stamp: 1730046352 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [dcmstack_0.9-3.dsc] I: copying [./dcmstack_0.9.orig.tar.gz] I: copying [./dcmstack_0.9-3.debian.tar.xz] I: Extracting source gpgv: Signature made Fri May 31 19:32:32 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./dcmstack_0.9-3.dsc: no acceptable signature found dpkg-source: info: extracting dcmstack in dcmstack-0.9 dpkg-source: info: unpacking dcmstack_0.9.orig.tar.gz dpkg-source: info: unpacking dcmstack_0.9-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-python3-mock dpkg-source: info: applying pytest-8.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/15737/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='217fb59099034edb93303e238054493e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='15737' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.WXfdyiCU/pbuilderrc_YO0k --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.WXfdyiCU/b1 --logfile b1/build.log dcmstack_0.9-3.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom07-i386 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/15737/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-dicom, python3-docutils, python3-nibabel, python3-numpy, python3-numpydoc, python3-pytest, python3-setuptools, python3-sphinx dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19934 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-dicom; however: Package python3-dicom is not installed. pbuilder-satisfydepends-dummy depends on python3-docutils; however: Package python3-docutils is not installed. pbuilder-satisfydepends-dummy depends on python3-nibabel; however: Package python3-nibabel is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-numpydoc; however: Package python3-numpydoc is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-all{a} python3-autocommand{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-decorator{a} python3-defusedxml{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jinja2{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-nibabel{a} python3-numpy{a} python3-numpydoc{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pydicom{a} python3-pygments{a} python3-pytest{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-snowballstemmer{a} python3-sphinx{a} python3-tabulate{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tzdata{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common krb5-locales libarchive-cpio-perl libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-fuse python3-pil wget 0 packages upgraded, 106 newly installed, 0 to remove and 0 not upgraded. Need to get 68.3 MB of archives. After unpacking 290 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.6-1 [813 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.3-1 [107 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.6-1 [2242 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.1-1 [23.1 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 12 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 libtirpc3t64 i386 1.3.4+ds-1.3 [90.2 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libnsl2 i386 1.3.0-3+b2 [42.4 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-5 [173 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.6-1 [1961 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.6-1 [669 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main i386 python3 i386 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 sgml-base all 1.31 [15.4 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 openssl i386 3.3.2-1 [1386 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20240203 [158 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3 [42.9 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-9 [102 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 47 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-2 [194 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5 [9550 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.1 [733 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 61 http://deb.debian.org/debian trixie/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 python3-zipp all 3.20.2-1 [10.3 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 74.1.2-2 [736 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20241024 [109 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 xml-core all 0.19 [20.1 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.0-3 [140 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14.2.0-6 [735 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 libjs-sphinxdoc all 7.4.7-3 [158 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libjson-perl all 4.10000-1 [87.5 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.0-3 [2167 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 liblbfgsb0 i386 3.0+dfsg.4-1+b1 [29.1 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 python-babel-localedata all 2.14.0-1 [5701 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.12.6-1 [1040 B] Get: 79 http://deb.debian.org/debian trixie/main i386 python3-babel all 2.14.0-1 [111 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 81 http://deb.debian.org/debian trixie/main i386 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 python3-charset-normalizer i386 3.4.0-1 [120 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 python3-decorator all 5.1.1-5 [15.1 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 python3-defusedxml all 0.7.1-2 [43.3 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 python3-roman all 4.2-1 [10.4 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 python3-idna all 3.8-2 [41.6 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 python3-imagesize all 1.4.1-1 [6688 B] Get: 89 http://deb.debian.org/debian trixie/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 90 http://deb.debian.org/debian trixie/main i386 python3-markupsafe i386 2.1.5-1+b1 [13.7 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 python3-jinja2 all 3.1.3-1 [119 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 python3-numpy i386 1:1.26.4+ds-11 [4299 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 python3-packaging all 24.1-1 [45.8 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 python3-scipy i386 1.13.1-5 [16.6 MB] Get: 95 http://deb.debian.org/debian trixie/main i386 python3-nibabel all 5.2.1-2 [2659 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 sphinx-common all 7.4.7-3 [731 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 python3-urllib3 all 2.0.7-2 [111 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 python3-sphinx all 7.4.7-3 [588 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 103 http://deb.debian.org/debian trixie/main i386 python3-numpydoc all 1.6.0-2 [49.6 kB] Get: 104 http://deb.debian.org/debian trixie/main i386 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 105 http://deb.debian.org/debian trixie/main i386 python3-pydicom all 2.4.3-1 [1120 kB] Get: 106 http://deb.debian.org/debian trixie/main i386 python3-pytest all 8.3.3-1 [249 kB] Fetched 68.3 MB in 2s (39.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19934 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.6-1_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.6-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.3-1_i386.deb ... Unpacking libexpat1:i386 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.6-1_i386.deb ... Unpacking python3.12-minimal (3.12.6-1) ... Setting up libpython3.12-minimal:i386 (3.12.6-1) ... Setting up libexpat1:i386 (2.6.3-1) ... Setting up python3.12-minimal (3.12.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20254 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_i386.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../04-libkrb5support0_1.21.3-3_i386.deb ... Unpacking libkrb5support0:i386 (1.21.3-3) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../05-libcom-err2_1.47.1-1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../06-libk5crypto3_1.21.3-3_i386.deb ... Unpacking libk5crypto3:i386 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../07-libkeyutils1_1.6.3-4_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../08-libkrb5-3_1.21.3-3_i386.deb ... Unpacking libkrb5-3:i386 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:i386. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3 to /lib/i386-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3.0.0 to /lib/i386-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:i386 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:i386. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_i386.deb ... Unpacking libnsl2:i386 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../14-libreadline8t64_8.2-5_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:i386. Preparing to unpack .../15-libpython3.12-stdlib_3.12.6-1_i386.deb ... Unpacking libpython3.12-stdlib:i386 (3.12.6-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.6-1_i386.deb ... Unpacking python3.12 (3.12.6-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21326 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.6-1_i386.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../01-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../03-openssl_3.3.2-1_i386.deb ... Unpacking openssl (3.3.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../04-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../06-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../08-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../09-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../10-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../11-bsdextrautils_2.40.2-9_i386.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../12-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../13-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. 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Selecting previously unselected package libicu72:i386. Preparing to unpack .../27-libicu72_72.1-5_i386.deb ... Unpacking libicu72:i386 (72.1-5) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../28-libxml2_2.12.7+dfsg+really2.9.14-0.1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.22.5-2_i386.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... 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Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../50-libjs-sphinxdoc_7.4.7-3_all.deb ... Unpacking libjs-sphinxdoc (7.4.7-3) ... Selecting previously unselected package libjson-perl. Preparing to unpack .../51-libjson-perl_4.10000-1_all.deb ... Unpacking libjson-perl (4.10000-1) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../52-liblapack3_3.12.0-3_i386.deb ... Unpacking liblapack3:i386 (3.12.0-3) ... Selecting previously unselected package liblbfgsb0:i386. Preparing to unpack .../53-liblbfgsb0_3.0+dfsg.4-1+b1_i386.deb ... Unpacking liblbfgsb0:i386 (3.0+dfsg.4-1+b1) ... Selecting previously unselected package python-babel-localedata. Preparing to unpack .../54-python-babel-localedata_2.14.0-1_all.deb ... Unpacking python-babel-localedata (2.14.0-1) ... Selecting previously unselected package python3-alabaster. Preparing to unpack .../55-python3-alabaster_0.7.16-0.1_all.deb ... Unpacking python3-alabaster (0.7.16-0.1) ... Selecting previously unselected package python3-all. Preparing to unpack .../56-python3-all_3.12.6-1_i386.deb ... Unpacking python3-all (3.12.6-1) ... Selecting previously unselected package python3-babel. Preparing to unpack .../57-python3-babel_2.14.0-1_all.deb ... Unpacking python3-babel (2.14.0-1) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../58-python3-certifi_2024.8.30+dfsg-1_all.deb ... Unpacking python3-certifi (2024.8.30+dfsg-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../59-python3-chardet_5.2.0+dfsg-1_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-1) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../60-python3-charset-normalizer_3.4.0-1_i386.deb ... Unpacking python3-charset-normalizer (3.4.0-1) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../61-python3-decorator_5.1.1-5_all.deb ... Unpacking python3-decorator (5.1.1-5) ... Selecting previously unselected package python3-defusedxml. Preparing to unpack .../62-python3-defusedxml_0.7.1-2_all.deb ... Unpacking python3-defusedxml (0.7.1-2) ... Selecting previously unselected package python3-roman. Preparing to unpack .../63-python3-roman_4.2-1_all.deb ... Unpacking python3-roman (4.2-1) ... Selecting previously unselected package python3-docutils. Preparing to unpack .../64-python3-docutils_0.21.2+dfsg-2_all.deb ... Unpacking python3-docutils (0.21.2+dfsg-2) ... Selecting previously unselected package python3-idna. Preparing to unpack .../65-python3-idna_3.8-2_all.deb ... Unpacking python3-idna (3.8-2) ... Selecting previously unselected package python3-imagesize. Preparing to unpack .../66-python3-imagesize_1.4.1-1_all.deb ... Unpacking python3-imagesize (1.4.1-1) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../67-python3-iniconfig_1.1.1-2_all.deb ... Unpacking python3-iniconfig (1.1.1-2) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../68-python3-markupsafe_2.1.5-1+b1_i386.deb ... Unpacking python3-markupsafe (2.1.5-1+b1) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../69-python3-jinja2_3.1.3-1_all.deb ... Unpacking python3-jinja2 (3.1.3-1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../70-python3-numpy_1%3a1.26.4+ds-11_i386.deb ... Unpacking python3-numpy (1:1.26.4+ds-11) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../71-python3-packaging_24.1-1_all.deb ... Unpacking python3-packaging (24.1-1) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../72-python3-scipy_1.13.1-5_i386.deb ... Unpacking python3-scipy (1.13.1-5) ... Selecting previously unselected package python3-nibabel. Preparing to unpack .../73-python3-nibabel_5.2.1-2_all.deb ... Unpacking python3-nibabel (5.2.1-2) ... Selecting previously unselected package sphinx-common. Preparing to unpack .../74-sphinx-common_7.4.7-3_all.deb ... Unpacking sphinx-common (7.4.7-3) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../75-python3-pygments_2.18.0+dfsg-1_all.deb ... Unpacking python3-pygments (2.18.0+dfsg-1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../76-python3-urllib3_2.0.7-2_all.deb ... Unpacking python3-urllib3 (2.0.7-2) ... Selecting previously unselected package python3-requests. Preparing to unpack .../77-python3-requests_2.32.3+dfsg-1_all.deb ... Unpacking python3-requests (2.32.3+dfsg-1) ... Selecting previously unselected package python3-snowballstemmer. Preparing to unpack .../78-python3-snowballstemmer_2.2.0-4_all.deb ... Unpacking python3-snowballstemmer (2.2.0-4) ... Selecting previously unselected package python3-sphinx. Preparing to unpack .../79-python3-sphinx_7.4.7-3_all.deb ... Unpacking python3-sphinx (7.4.7-3) ... Selecting previously unselected package python3-tabulate. Preparing to unpack .../80-python3-tabulate_0.9.0-1_all.deb ... Unpacking python3-tabulate (0.9.0-1) ... Selecting previously unselected package python3-numpydoc. Preparing to unpack .../81-python3-numpydoc_1.6.0-2_all.deb ... Unpacking python3-numpydoc (1.6.0-2) ... Selecting previously unselected package python3-pluggy. Preparing to unpack .../82-python3-pluggy_1.5.0-1_all.deb ... Unpacking python3-pluggy (1.5.0-1) ... Selecting previously unselected package python3-pydicom. Preparing to unpack .../83-python3-pydicom_2.4.3-1_all.deb ... Unpacking python3-pydicom (2.4.3-1) ... Selecting previously unselected package python3-pytest. Preparing to unpack .../84-python3-pytest_8.3.3-1_all.deb ... Unpacking python3-pytest (8.3.3-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libkeyutils1:i386 (1.6.3-4) ... Setting up libicu72:i386 (72.1-5) ... Setting up bsdextrautils (2.40.2-9) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:i386 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:i386 (0.191-2) ... Setting up python-babel-localedata (2.14.0-1) ... Setting up libkrb5support0:i386 (1.21.3-3) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Oct 27 16:26:44 UTC 2024. Universal Time is now: Sun Oct 27 16:26:44 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:i386 (1.21.3-3) ... Setting up libgfortran5:i386 (14.2.0-6) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up libjson-perl (4.10000-1) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:i386 (1.21.3-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.3.2-1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-3) ... Setting up libreadline8t64:i386 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up xml-core (0.19) ... Setting up liblbfgsb0:i386 (3.0+dfsg.4-1+b1) ... Setting up libtirpc3t64:i386 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up sphinx-common (7.4.7-3) ... Setting up libnsl2:i386 (1.3.0-3+b2) ... Setting up libpython3.12-stdlib:i386 (3.12.6-1) ... Setting up python3.12 (3.12.6-1) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:i386 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-markupsafe (2.1.5-1+b1) ... Setting up python3-roman (4.2-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.1-1) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up python3-idna (3.8-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-pydicom (2.4.3-1) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up python3-charset-normalizer (3.4.0-1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-babel (2.14.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up dh-python (6.20241024) ... Setting up python3-scipy (1.13.1-5) ... Setting up python3-nibabel (5.2.1-2) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (7.4.7-3) ... Setting up python3-numpydoc (1.6.0-2) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/dcmstack-0.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../dcmstack_0.9-3_source.changes dpkg-buildpackage: info: source package dcmstack dpkg-buildpackage: info: source version 0.9-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.12 I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-dcmstack.substvars debian/files rm -fr -- debian/python3-dcmstack/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.12 I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p 3.12 I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack copying src/dcmstack/nitool_cli.py -> /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack copying src/dcmstack/dcmstack.py -> /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack copying src/dcmstack/dcmstack_cli.py -> /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack copying src/dcmstack/info.py -> /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack copying src/dcmstack/utils.py -> /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack copying src/dcmstack/__init__.py -> /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack copying src/dcmstack/extract.py -> /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack copying src/dcmstack/dcmmeta.py -> /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack dh_auto_test -O--buildsystem=pybuild pybuild --test --test-pytest -i python{version} -p 3.12 I: pybuild base:311: cd /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build; python3.12 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.12.6, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/dcmstack-0.9 plugins: typeguard-4.3.0 collected 131 items test/test_cli.py ... [ 2%] test/test_dcmmeta.py ................................................... [ 41%] ....................... [ 58%] test/test_dcmstack.py ............................................. [ 93%] test/test_extract.py ......... [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.12_dcmstack/build/test/test_cli.py::TestDcmstackCli::test_basic .pybuild/cpython3_3.12_dcmstack/build/test/test_cli.py::TestDcmstackCli::test_embed .pybuild/cpython3_3.12_dcmstack/build/test/test_cli.py::TestNitoolCli::test_basic .pybuild/cpython3_3.12_dcmstack/build/test/test_dcmstack.py::TestToNifti::test_single_vol .pybuild/cpython3_3.12_dcmstack/build/test/test_dcmstack.py::TestToNifti::test_slice_dim_reorient .pybuild/cpython3_3.12_dcmstack/build/test/test_dcmstack.py::TestToNifti::test_two_time_vol .pybuild/cpython3_3.12_dcmstack/build/test/test_dcmstack.py::TestToNifti::test_two_vector_vol /usr/lib/python3/dist-packages/nibabel/nifti1.py:1646: UserWarning: Multiple slice orders satisfy: sequential decreasing, alternating decreasing, alternating increasing 2. Choosing the first one warnings.warn( .pybuild/cpython3_3.12_dcmstack/build/test/test_dcmstack.py::test_fsl_hack .pybuild/cpython3_3.12_dcmstack/build/test/test_dcmstack.py::test_pix_overflow /usr/lib/python3/dist-packages/pydicom/dataset.py:2249: DeprecationWarning: Starting in pydicom 3.0, Dataset.file_meta must be a FileMetaDataset class instance warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================= 131 passed, 9 warnings in 2.57s ======================== rm -fr -- /tmp/dh-xdg-rundir-3y99389C create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-dcmstack.substvars rm -fr -- debian/.debhelper/generated/python3-dcmstack/ debian/python3-dcmstack/ debian/tmp/ dh_auto_install --destdir=debian/python3-dcmstack/ -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack pybuild --install -i python{version} -p 3.12 --dest-dir /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr creating /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib creating /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12 creating /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages creating /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack copying /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack/nitool_cli.py -> /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack creating /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack/__pycache__ copying /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack/__pycache__ copying /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack/__pycache__ copying /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack/__pycache__/extract.cpython-312.pyc -> /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack/__pycache__ copying /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack/__pycache__/nitool_cli.cpython-312.pyc -> /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack/__pycache__ copying /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack/__pycache__/dcmstack_cli.cpython-312.pyc -> /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack/__pycache__ copying /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack/__pycache__/dcmmeta.cpython-312.pyc -> /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack/__pycache__ copying /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack/__pycache__/dcmstack.cpython-312.pyc -> /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack/__pycache__ copying /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack/__pycache__/info.cpython-312.pyc -> /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack/__pycache__ copying /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack/dcmstack.py -> /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack copying /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack/dcmstack_cli.py -> /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack copying /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack/info.py -> /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack copying /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack/utils.py -> /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack copying /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack/__init__.py -> /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack copying /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack/extract.py -> /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack copying /build/reproducible-path/dcmstack-0.9/.pybuild/cpython3_3.12_dcmstack/build/dcmstack/dcmmeta.py -> /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack byte-compiling /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack/nitool_cli.py to nitool_cli.cpython-312.pyc byte-compiling /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack/dcmstack.py to dcmstack.cpython-312.pyc byte-compiling /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack/dcmstack_cli.py to dcmstack_cli.cpython-312.pyc byte-compiling /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack/info.py to info.cpython-312.pyc byte-compiling /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack/utils.py to utils.cpython-312.pyc byte-compiling /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack/extract.py to extract.cpython-312.pyc byte-compiling /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack/dcmmeta.py to dcmmeta.cpython-312.pyc running install_egg_info running egg_info creating src/dcmstack.egg-info writing src/dcmstack.egg-info/PKG-INFO writing dependency_links to src/dcmstack.egg-info/dependency_links.txt writing entry points to src/dcmstack.egg-info/entry_points.txt writing requirements to src/dcmstack.egg-info/requires.txt writing top-level names to src/dcmstack.egg-info/top_level.txt writing manifest file 'src/dcmstack.egg-info/SOURCES.txt' reading manifest file 'src/dcmstack.egg-info/SOURCES.txt' adding license file 'COPYING' writing manifest file 'src/dcmstack.egg-info/SOURCES.txt' Copying src/dcmstack.egg-info to /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/lib/python3.12/dist-packages/dcmstack-0.9.0.egg-info Skipping SOURCES.txt running install_scripts Installing dcmstack script to /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/bin Installing nitool script to /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/bin debian/rules override_dh_installdocs make[1]: Entering directory '/build/reproducible-path/dcmstack-0.9' PYTHONPATH=. http_proxy='127.0.0.1:9' python3 -m sphinx -N -bhtml doc/ build/html Running Sphinx v7.4.7 loading translations [en]... done making output directory... done Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. [autosummary] generating autosummary for: CLI_Tutorial.rst, DcmMeta_Extension.rst, Introduction.rst, Python_Tutorial.rst, dcmstack.rst, index.rst, modules.rst building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 7 source files that are out of date updating environment: [new config] 7 added, 0 changed, 0 removed reading sources... [ 14%] CLI_Tutorial reading sources... [ 29%] DcmMeta_Extension reading sources... [ 43%] Introduction reading sources... [ 57%] Python_Tutorial reading sources... [ 71%] dcmstack reading sources... [ 86%] index reading sources... [100%] modules /build/reproducible-path/dcmstack-0.9/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomOrdering:34: WARNING: autosummary: stub file not found 'dcmstack.dcmstack.DicomOrdering.get_ordinate'. Check your autosummary_generate setting. /build/reproducible-path/dcmstack-0.9/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack:51: WARNING: autosummary: stub file not found 'dcmstack.dcmstack.DicomStack.add_dcm'. Check your autosummary_generate setting. /build/reproducible-path/dcmstack-0.9/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack:51: WARNING: autosummary: stub file not found 'dcmstack.dcmstack.DicomStack.clear'. Check your autosummary_generate setting. /build/reproducible-path/dcmstack-0.9/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack:51: WARNING: autosummary: stub file not found 'dcmstack.dcmstack.DicomStack.get_affine'. Check your autosummary_generate setting. /build/reproducible-path/dcmstack-0.9/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack:51: WARNING: autosummary: stub file not found 'dcmstack.dcmstack.DicomStack.get_data'. Check your autosummary_generate setting. /build/reproducible-path/dcmstack-0.9/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack:51: WARNING: autosummary: stub file not found 'dcmstack.dcmstack.DicomStack.get_shape'. Check your autosummary_generate setting. /build/reproducible-path/dcmstack-0.9/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack:51: WARNING: autosummary: stub file not found 'dcmstack.dcmstack.DicomStack.to_nifti'. Check your autosummary_generate setting. /build/reproducible-path/dcmstack-0.9/src/dcmstack/dcmstack.py:docstring of dcmstack.dcmstack.DicomStack:51: WARNING: autosummary: stub file not found 'dcmstack.dcmstack.DicomStack.to_nifti_wrapper'. Check your autosummary_generate setting. /build/reproducible-path/dcmstack-0.9/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper:36: WARNING: autosummary: stub file not found 'dcmstack.dcmmeta.NiftiWrapper.from_dicom'. Check your autosummary_generate setting. /build/reproducible-path/dcmstack-0.9/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper:36: WARNING: autosummary: stub file not found 'dcmstack.dcmmeta.NiftiWrapper.from_dicom_wrapper'. Check your autosummary_generate setting. /build/reproducible-path/dcmstack-0.9/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper:36: WARNING: autosummary: stub file not found 'dcmstack.dcmmeta.NiftiWrapper.from_filename'. Check your autosummary_generate setting. /build/reproducible-path/dcmstack-0.9/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper:36: WARNING: autosummary: stub file not found 'dcmstack.dcmmeta.NiftiWrapper.from_sequence'. Check your autosummary_generate setting. /build/reproducible-path/dcmstack-0.9/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper:36: WARNING: autosummary: stub file not found 'dcmstack.dcmmeta.NiftiWrapper.get_meta'. Check your autosummary_generate setting. /build/reproducible-path/dcmstack-0.9/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper:36: WARNING: autosummary: stub file not found 'dcmstack.dcmmeta.NiftiWrapper.meta_valid'. Check your autosummary_generate setting. /build/reproducible-path/dcmstack-0.9/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper:36: WARNING: autosummary: stub file not found 'dcmstack.dcmmeta.NiftiWrapper.remove_extension'. Check your autosummary_generate setting. /build/reproducible-path/dcmstack-0.9/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper:36: WARNING: autosummary: stub file not found 'dcmstack.dcmmeta.NiftiWrapper.replace_extension'. Check your autosummary_generate setting. /build/reproducible-path/dcmstack-0.9/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper:36: WARNING: autosummary: stub file not found 'dcmstack.dcmmeta.NiftiWrapper.split'. Check your autosummary_generate setting. /build/reproducible-path/dcmstack-0.9/src/dcmstack/dcmmeta.py:docstring of dcmstack.dcmmeta.NiftiWrapper:36: WARNING: autosummary: stub file not found 'dcmstack.dcmmeta.NiftiWrapper.to_filename'. Check your autosummary_generate setting. /build/reproducible-path/dcmstack-0.9/src/dcmstack/extract.py:docstring of dcmstack.extract.MetaExtractor:40: WARNING: autosummary: stub file not found 'dcmstack.extract.MetaExtractor.__call__'. Check your autosummary_generate setting. /build/reproducible-path/dcmstack-0.9/src/dcmstack/extract.py:docstring of dcmstack.extract.Translator:35: WARNING: autosummary: stub file not found 'dcmstack.extract.Translator.count'. Check your autosummary_generate setting. /build/reproducible-path/dcmstack-0.9/src/dcmstack/extract.py:docstring of dcmstack.extract.Translator:35: WARNING: autosummary: stub file not found 'dcmstack.extract.Translator.index'. Check your autosummary_generate setting. looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... done copying extra files... done copying assets: done writing output... [ 14%] CLI_Tutorial writing output... [ 29%] DcmMeta_Extension writing output... [ 43%] Introduction writing output... [ 57%] Python_Tutorial writing output... [ 71%] dcmstack writing output... [ 86%] index writing output... [100%] modules generating indices... genindex py-modindex done writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 21 warnings. The HTML pages are in build/html. dh_installdocs install -m0755 -d debian/python3-dcmstack/usr/share/doc/python3-dcmstack install -m0755 -d debian/python3-dcmstack/usr/share/doc/python3-dcmstack cd './build/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/reproducible-path/dcmstack-0.9/debian/python3-dcmstack/usr/share/doc/python3-dcmstack chmod -R u\+rw,go=rX debian/python3-dcmstack/usr/share/doc install -p -m0644 debian/copyright debian/python3-dcmstack/usr/share/doc/python3-dcmstack/copyright make[1]: Leaving directory '/build/reproducible-path/dcmstack-0.9' dh_sphinxdoc -O--buildsystem=pybuild ln -sf ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/sphinx_highlight.js ln -sf ../../../../javascript/sphinxdoc/1.0/sidebar.js debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/sidebar.js ln -sf ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/searchtools.js ln -sf ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/language_data.js ln -sf ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/doctools.js rm -rf debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/.doctrees rm -f debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/.buildinfo mv debian/python3-dcmstack.substvars.new debian/python3-dcmstack.substvars mv debian/python3-dcmstack.substvars.new debian/python3-dcmstack.substvars mv debian/python3-dcmstack.substvars.new debian/python3-dcmstack.substvars mv debian/python3-dcmstack.substvars.new debian/python3-dcmstack.substvars mv debian/python3-dcmstack.substvars.new debian/python3-dcmstack.substvars mv debian/python3-dcmstack.substvars.new debian/python3-dcmstack.substvars dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-dcmstack/usr/share/doc/python3-dcmstack install -p -m0644 debian/.debhelper/generated/python3-dcmstack/dh_installchangelogs.dch.trimmed debian/python3-dcmstack/usr/share/doc/python3-dcmstack/changelog.Debian dh_installman -O--buildsystem=pybuild install -m0755 -d debian/python3-dcmstack/usr/share/man/man1/ install -p -m0644 ./debian/man/dcmstack.1 debian/python3-dcmstack/usr/share/man/man1/dcmstack.1 install -m0755 -d debian/python3-dcmstack/usr/share/man/man1/ install -p -m0644 ./debian/man/nitool.1 debian/python3-dcmstack/usr/share/man/man1/nitool.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-dcmstack/usr/share/man/man1/nitool.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-dcmstack/usr/share/man/man1/dcmstack.1 mv debian/python3-dcmstack/usr/share/man/man1/dcmstack.1.dh-new debian/python3-dcmstack/usr/share/man/man1/dcmstack.1 chmod 0644 -- debian/python3-dcmstack/usr/share/man/man1/dcmstack.1 mv debian/python3-dcmstack/usr/share/man/man1/nitool.1.dh-new debian/python3-dcmstack/usr/share/man/man1/nitool.1 chmod 0644 -- debian/python3-dcmstack/usr/share/man/man1/nitool.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20241024 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.12 (default=3.12) D: dh_python3 debhelper:174: source=dcmstack, binary packages=['python3-dcmstack'] D: dh_python3 dh_python3:205: processing package python3-dcmstack... D: dh_python3 fs:50: moving files from debian/python3-dcmstack/usr/lib/python3.12/dist-packages to debian/python3-dcmstack/usr/lib/python3/dist-packages/ D: dh_python3 fs:338: package python3-dcmstack details = {'requires.txt': {'debian/python3-dcmstack/usr/lib/python3/dist-packages/dcmstack-0.9.0.egg-info/requires.txt'}, 'egg-info': {'debian/python3-dcmstack/usr/lib/python3/dist-packages/dcmstack-0.9.0.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-dcmstack D: dh_python3 pydist:175: trying to find dependency for nibabel>=2.5.1 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for pydicom>=0.9.7 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for pylibjpeg-libjpeg (python=None) D: dh_python3 pydist:291: invoking dpkg -S *python3/*/[Pp][Yy][Ll][Ii][Bb][Jj][Pp][Ee][Gg]_[Ll][Ii][Bb][Jj][Pp][Ee][Gg]-?*.*-info D: dh_python3 pydist:313: dpkg -S did not find package for pylibjpeg_libjpeg: dpkg-query: no path found matching pattern *python3/*/[Pp][Yy][Ll][Ii][Bb][Jj][Pp][Ee][Gg]_[Ll][Ii][Bb][Jj][Pp][Ee][Gg]-?*.*-info I: dh_python3 pydist:316: Cannot find package that provides pylibjpeg_libjpeg. Please add package that provides it to Build-Depends or add "pylibjpeg_libjpeg python3-pylibjpeg-libjpeg" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. D: dh_python3 depends:253: D={'python3-nibabel', 'python3-pydicom', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild rm -f debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/sidebar.js ln -s ../../../../javascript/sphinxdoc/1.0/sidebar.js debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/sidebar.js rm -f debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/sphinx_highlight.js ln -s ../../../../javascript/sphinxdoc/1.0/sphinx_highlight.js debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/sphinx_highlight.js rm -f debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/doctools.js ln -s ../../../../javascript/sphinxdoc/1.0/doctools.js debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/doctools.js rm -f debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/language_data.js ln -s ../../../../javascript/sphinxdoc/1.0/language_data.js debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/language_data.js rm -f debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/searchtools.js ln -s ../../../../javascript/sphinxdoc/1.0/searchtools.js debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/searchtools.js dh_strip_nondeterminism -O--buildsystem=pybuild Using 1717183668 as canonical time Normalizing debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/file.png using File::StripNondeterminism::handlers::png Normalizing debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/minus.png using File::StripNondeterminism::handlers::png Normalizing debian/python3-dcmstack/usr/share/doc/python3-dcmstack/html/_static/plus.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild cd debian/python3-dcmstack chmod a-x usr/share/doc/python3-dcmstack/changelog.Debian usr/share/man/man1/dcmstack.1 usr/share/man/man1/nitool.1 gzip -9nf usr/share/doc/python3-dcmstack/changelog.Debian usr/share/man/man1/dcmstack.1 usr/share/man/man1/nitool.1 cd '/build/reproducible-path/dcmstack-0.9' dh_fixperms -O--buildsystem=pybuild find debian/python3-dcmstack ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-dcmstack/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-dcmstack/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-dcmstack/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-dcmstack/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-dcmstack -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-dcmstack/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-dcmstack/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-dcmstack/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-dcmstack/DEBIAN/postinst cat debian/python3-dcmstack.postinst.debhelper >> debian/python3-dcmstack/DEBIAN/postinst chmod 0755 -- debian/python3-dcmstack/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-dcmstack/DEBIAN/prerm cat debian/python3-dcmstack.prerm.debhelper >> debian/python3-dcmstack/DEBIAN/prerm chmod 0755 -- debian/python3-dcmstack/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python3-dcmstack/DEBIAN echo misc:Depends= >> debian/python3-dcmstack.substvars echo misc:Pre-Depends= >> debian/python3-dcmstack.substvars dpkg-gencontrol -ppython3-dcmstack -ldebian/changelog -Tdebian/python3-dcmstack.substvars -cdebian/control -Pdebian/python3-dcmstack dpkg-gencontrol: warning: Provides field of package python3-dcmstack: substitution variable ${python3:Provides} used, but is not defined dpkg-gencontrol: warning: package python3-dcmstack: substitution variable ${sphinxdoc:Built-Using} unused, but is defined chmod 0644 -- debian/python3-dcmstack/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-dcmstack/DEBIAN cd debian/python3-dcmstack >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-dcmstack/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-dcmstack .. dpkg-deb: building package 'python3-dcmstack' in '../python3-dcmstack_0.9-3_all.deb'. dpkg-genbuildinfo --build=binary -O../dcmstack_0.9-3_i386.buildinfo dpkg-genchanges --build=binary -O../dcmstack_0.9-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/15737 and its subdirectories I: Current time: Sun Oct 27 04:27:23 -12 2024 I: pbuilder-time-stamp: 1730046443 Sun Oct 27 16:27:26 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom08-i386.debian.net. Sun Oct 27 16:27:26 UTC 2024 I: Preparing to do remote build '2' on infom08-i386.debian.net. Sun Oct 27 16:28:27 UTC 2024 I: Deleting $TMPDIR on infom08-i386.debian.net. Sun Oct 27 16:28:28 UTC 2024 I: dcmstack_0.9-3_i386.changes: Format: 1.8 Date: Fri, 31 May 2024 21:27:48 +0200 Source: dcmstack Binary: python3-dcmstack Architecture: all Version: 0.9-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: python3-dcmstack - DICOM to NIfTI conversion - python3 package Changes: dcmstack (0.9-3) unstable; urgency=medium . * d/t/control: ignore autopkgtest failures on s390x. The package has a history of having always failed tests since debci supports s390x sunners. Checksums-Sha1: adec71322be8e1396c88e8e3211d1adf5d2cbbff 7031 dcmstack_0.9-3_i386.buildinfo de251d282a89193baacb0dfc16cee8558c345bbc 78356 python3-dcmstack_0.9-3_all.deb Checksums-Sha256: 38ee70f7f743a9c118f4ee953bbf69f224ea3d5e454f4344b264c954fe51d25c 7031 dcmstack_0.9-3_i386.buildinfo 00058e2e61c47eea58dfa8d0bdf7ea93d5fd70612e000bb8f4d86df4a4bda3b3 78356 python3-dcmstack_0.9-3_all.deb Files: 451dde13e8c7c672c38a27a767751389 7031 science optional dcmstack_0.9-3_i386.buildinfo 7e91b617b6087bacafe961313c6e93a1 78356 science optional python3-dcmstack_0.9-3_all.deb Sun Oct 27 16:28:29 UTC 2024 I: diffoscope 282 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_17-25682.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.WXfdyiCU/dcmstack_0.9-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.WXfdyiCU/dcmstack_0.9-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.WXfdyiCU/dcmstack_0.9-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.WXfdyiCU/b1/dcmstack_0.9-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.WXfdyiCU/b2/dcmstack_0.9-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.398s) 0.398s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.018s) 0.018s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 758ms CPU time consumed: 756ms Sun Oct 27 16:28:30 UTC 2024 I: diffoscope 282 found no differences in the changes files, and a .buildinfo file also exists. Sun Oct 27 16:28:30 UTC 2024 I: dcmstack from trixie built successfully and reproducibly on i386. Sun Oct 27 16:28:31 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Oct 27 16:28:31 UTC 2024 I: Submitting 8.0K b1/dcmstack_0.9-3_i386.buildinfo.asc Sun Oct 27 16:28:32 UTC 2024 I: Submitting 8.0K b2/dcmstack_0.9-3_i386.buildinfo.asc Sun Oct 27 16:28:33 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Oct 27 16:28:33 UTC 2024 I: Done submitting .buildinfo files. Sun Oct 27 16:28:33 UTC 2024 I: Removing signed dcmstack_0.9-3_i386.buildinfo.asc files: removed './b1/dcmstack_0.9-3_i386.buildinfo.asc' removed './b2/dcmstack_0.9-3_i386.buildinfo.asc'