Tue Nov 19 14:12:40 UTC 2024 I: starting to build bioawk/trixie/i386 on jenkins on '2024-11-19 14:12' Tue Nov 19 14:12:40 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_12/29255/console.log Tue Nov 19 14:12:40 UTC 2024 I: Downloading source for trixie/bioawk=1.0-5 --2024-11-19 14:12:40-- http://deb.debian.org/debian/pool/main/b/bioawk/bioawk_1.0-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1618 (1.6K) [text/prs.lines.tag] Saving to: ‘bioawk_1.0-5.dsc’ 0K . 100% 203M=0s 2024-11-19 14:12:40 (203 MB/s) - ‘bioawk_1.0-5.dsc’ saved [1618/1618] Tue Nov 19 14:12:40 UTC 2024 I: bioawk_1.0-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: bioawk Binary: bioawk Architecture: any Version: 1.0-5 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Homepage: https://github.com/lh3/bioawk Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/bioawk Vcs-Git: https://salsa.debian.org/med-team/bioawk.git Testsuite: autopkgtest Testsuite-Triggers: samtools-test, seqkit-examples Build-Depends: debhelper-compat (= 13), bison, libz-dev Package-List: bioawk deb science optional arch=any Checksums-Sha1: 6c0de67e4a9a8718e87e8d78395d3299f866f1d1 72096 bioawk_1.0.orig.tar.gz 8105dc851a3b4b50bd33f7270a57642948114056 5364 bioawk_1.0-5.debian.tar.xz Checksums-Sha256: 5cbef3f39b085daba45510ff450afcf943cfdfdd483a546c8a509d3075ff51b5 72096 bioawk_1.0.orig.tar.gz 0128e964d49fad2e67975a71eb88c36f824128275e9f9132ce67694cb57a5a8f 5364 bioawk_1.0-5.debian.tar.xz Files: a2d0dbb2943b3e0bea96a5360390b656 72096 bioawk_1.0.orig.tar.gz 2c5890a2d06b41f779009308e8b93ee1 5364 bioawk_1.0-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEE1Uw7+v+wQt44LaXXQc5/C58bizIFAmYO4M8ACgkQQc5/C58b izJduAf+MQjMu7keoU8ZbhFOB4nFNZjXaxH+J5AfO8FP3MLdG0RaDNzsNsItCDMy 0Uzf6LNdsKCMAHk/yXdfNvxn47KBnZjkinJRgX2LrFtcDLRlRJt8BNQ4qTQyWgI5 FSPa0VZgU9kouJTfopIluDTsyz8VZi8pooIaWwv2Lvv64EVb6soiGX3P7ocZw2Z3 Wz/vMmFZ+0UhPP7Wh4LNp/BYthLNyqhPLB0wFLrs163jUJkMsd29yepvaGB+YlxZ 1cVbZILKweNAPQFHEDq04PvkD3CwKcAsjz5ioGMq7eNB7Ooi3IAc62nRlTYEbvx3 OWRAB7o/OWR5jKK84TyFp2lwIUVnOA== =AUnn -----END PGP SIGNATURE----- Tue Nov 19 14:12:40 UTC 2024 I: Checking whether the package is not for us Tue Nov 19 14:12:40 UTC 2024 I: Starting 1st build on remote node ionos12-i386.debian.net. Tue Nov 19 14:12:40 UTC 2024 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Tue Nov 19 14:13:23 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Nov 19 02:12:42 -12 2024 I: pbuilder-time-stamp: 1732025562 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [bioawk_1.0-5.dsc] I: copying [./bioawk_1.0.orig.tar.gz] I: copying [./bioawk_1.0-5.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Apr 4 17:18:07 2024 gpgv: using RSA key D54C3BFAFFB042DE382DA5D741CE7F0B9F1B8B32 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./bioawk_1.0-5.dsc: no acceptable signature found dpkg-source: info: extracting bioawk in bioawk-1.0 dpkg-source: info: unpacking bioawk_1.0.orig.tar.gz dpkg-source: info: unpacking bioawk_1.0-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/25188/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='6e7de7aecb7f43ebbe71347c44f992cb' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='25188' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.VN00fuOV/pbuilderrc_G77r --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.VN00fuOV/b1 --logfile b1/build.log bioawk_1.0-5.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/25188/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), bison, libz-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on bison; however: Package bison is not installed. pbuilder-satisfydepends-dummy depends on libz-dev; however: Package libz-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bison{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 22.2 MB of archives. After unpacking 80.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-11 [95.6 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 bison i386 2:3.8.2+dfsg-1+b2 [1182 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-8 [517 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 23 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5+b1 [9583 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Fetched 22.2 MB in 0s (50.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19956 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_i386.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package bison. Preparing to unpack .../15-bison_2%3a3.8.2+dfsg-1+b2_i386.deb ... Unpacking bison (2:3.8.2+dfsg-1+b2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../22-libelf1t64_0.192-4_i386.deb ... Unpacking libelf1t64:i386 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../24-libicu72_72.1-5+b1_i386.deb ... Unpacking libicu72:i386 (72.1-5+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.22.5-2_i386.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../30-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libicu72:i386 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up bison (2:3.8.2+dfsg-1+b2) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/bioawk-1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bioawk_1.0-5_source.changes dpkg-buildpackage: info: source package bioawk dpkg-buildpackage: info: source version 1.0-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Santiago Vila dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/bioawk-1.0' dh_auto_clean make -j1 clean make[2]: Entering directory '/build/reproducible-path/bioawk-1.0' rm -fr a.out *.o *.obj maketab maketab.exe *.bb *.bbg *.da *.gcov *.gcno *.gcda awk ytab.* proctab.c *.dSYM make[2]: Leaving directory '/build/reproducible-path/bioawk-1.0' rm -f y.tab.h y.tab.c rm -f bioawk maketab make[1]: Leaving directory '/build/reproducible-path/bioawk-1.0' dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/bioawk.substvars debian/files rm -fr -- debian/bioawk/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel dh_auto_build -O--no-parallel make -j1 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/bioawk-1.0' bison -y -d awkgram.y awkgram.y: warning: 43 shift/reduce conflicts [-Wconflicts-sr] awkgram.y: warning: 85 reduce/reduce conflicts [-Wconflicts-rr] awkgram.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples cp y.tab.c ytab.c cp y.tab.h ytab.h gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c ytab.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o b.o b.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o main.o main.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o parse.o parse.c i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 maketab.c -o maketab -Wl,-z,relro -Wl,-z,now ./maketab >proctab.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o proctab.o proctab.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tran.o tran.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lib.o lib.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o run.o run.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o lex.o lex.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o addon.o addon.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bioawk-1.0=. -fstack-protector-strong -Wformat -Werror=format-security ytab.o b.o main.o parse.o proctab.o tran.o lib.o run.o lex.o addon.o -o bioawk -lm -lz -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/reproducible-path/bioawk-1.0' dh_auto_test -O--no-parallel rm -fr -- /tmp/dh-xdg-rundir-0lG79GMv create-stamp debian/debhelper-build-stamp dh_testroot -O--no-parallel dh_prep -O--no-parallel rm -f -- debian/bioawk.substvars rm -fr -- debian/.debhelper/generated/bioawk/ debian/bioawk/ debian/tmp/ dh_auto_install --destdir=debian/bioawk/ -O--no-parallel install -m0755 -d /build/reproducible-path/bioawk-1.0/debian/bioawk dh_install -O--no-parallel install -m0755 -d debian/bioawk/usr/bin cp --reflink=auto -a ./bioawk debian/bioawk/usr/bin/ dh_installdocs -O--no-parallel install -m0755 -d debian/bioawk/usr/share/doc/bioawk install -p -m0644 debian/copyright debian/bioawk/usr/share/doc/bioawk/copyright dh_installchangelogs -O--no-parallel install -m0755 -d debian/bioawk/usr/share/doc/bioawk install -p -m0644 debian/.debhelper/generated/bioawk/dh_installchangelogs.dch.trimmed debian/bioawk/usr/share/doc/bioawk/changelog.Debian dh_installman -O--no-parallel install -m0755 -d debian/bioawk/usr/share/man/man1/ install -p -m0644 ./debian/bioawk.1 debian/bioawk/usr/share/man/man1/bioawk.1 man-recode --to-code UTF-8 --suffix .dh-new debian/bioawk/usr/share/man/man1/bioawk.1 mv debian/bioawk/usr/share/man/man1/bioawk.1.dh-new debian/bioawk/usr/share/man/man1/bioawk.1 chmod 0644 -- debian/bioawk/usr/share/man/man1/bioawk.1 dh_installsystemduser -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel cd debian/bioawk chmod a-x usr/share/doc/bioawk/changelog.Debian usr/share/man/man1/bioawk.1 gzip -9nf usr/share/doc/bioawk/changelog.Debian usr/share/man/man1/bioawk.1 cd '/build/reproducible-path/bioawk-1.0' dh_fixperms -O--no-parallel find debian/bioawk ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/bioawk/usr/share/doc -type f -a -true -a ! -regex 'debian/bioawk/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/bioawk/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/bioawk/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/bioawk -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/bioawk/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -O--no-parallel dh_dwz -a -O--no-parallel dwz -- debian/bioawk/usr/bin/bioawk dh_strip -a -O--no-parallel install -m0755 -d debian/.debhelper/bioawk/dbgsym-root/usr/lib/debug/.build-id/af objcopy --only-keep-debug --compress-debug-sections debian/bioawk/usr/bin/bioawk debian/.debhelper/bioawk/dbgsym-root/usr/lib/debug/.build-id/af/f6c067489d78e67086f8556956e5bf26fff802.debug chmod 0644 -- debian/.debhelper/bioawk/dbgsym-root/usr/lib/debug/.build-id/af/f6c067489d78e67086f8556956e5bf26fff802.debug strip --remove-section=.comment --remove-section=.note debian/bioawk/usr/bin/bioawk objcopy --add-gnu-debuglink debian/.debhelper/bioawk/dbgsym-root/usr/lib/debug/.build-id/af/f6c067489d78e67086f8556956e5bf26fff802.debug debian/bioawk/usr/bin/bioawk install -m0755 -d debian/.debhelper/bioawk/dbgsym-root/usr/share/doc ln -s bioawk debian/.debhelper/bioawk/dbgsym-root/usr/share/doc/bioawk-dbgsym install -m0755 -d debian/.debhelper/bioawk dh_makeshlibs -a -O--no-parallel rm -f debian/bioawk/DEBIAN/shlibs dh_shlibdeps -a -O--no-parallel install -m0755 -d debian/bioawk/DEBIAN dpkg-shlibdeps -Tdebian/bioawk.substvars debian/bioawk/usr/bin/bioawk dh_installdeb -O--no-parallel install -m0755 -d debian/bioawk/DEBIAN dh_gencontrol -O--no-parallel install -m0755 -d debian/bioawk/DEBIAN echo misc:Depends= >> debian/bioawk.substvars echo misc:Pre-Depends= >> debian/bioawk.substvars install -m0755 -d debian/.debhelper/bioawk/dbgsym-root/DEBIAN dpkg-gencontrol -pbioawk -ldebian/changelog -Tdebian/bioawk.substvars -cdebian/control -Pdebian/.debhelper/bioawk/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=bioawk-dbgsym "-DDepends=bioawk (= \${binary:Version})" "-DDescription=debug symbols for bioawk" -DBuild-Ids=aff6c067489d78e67086f8556956e5bf26fff802 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/bioawk/dbgsym-root/DEBIAN/control dpkg-gencontrol -pbioawk -ldebian/changelog -Tdebian/bioawk.substvars -cdebian/control -Pdebian/bioawk chmod 0644 -- debian/bioawk/DEBIAN/control dh_md5sums -O--no-parallel install -m0755 -d debian/bioawk/DEBIAN cd debian/bioawk >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/bioawk/DEBIAN/md5sums install -m0755 -d debian/.debhelper/bioawk/dbgsym-root/DEBIAN cd debian/.debhelper/bioawk/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/bioawk/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--no-parallel dpkg-deb --root-owner-group --build debian/bioawk .. dpkg-deb --root-owner-group --build debian/.debhelper/bioawk/dbgsym-root .. dpkg-deb: building package 'bioawk-dbgsym' in '../bioawk-dbgsym_1.0-5_i386.deb'. dpkg-deb: building package 'bioawk' in '../bioawk_1.0-5_i386.deb'. dpkg-genbuildinfo --build=binary -O../bioawk_1.0-5_i386.buildinfo dpkg-genchanges --build=binary -O../bioawk_1.0-5_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/25188 and its subdirectories I: Current time: Tue Nov 19 02:13:22 -12 2024 I: pbuilder-time-stamp: 1732025602 Tue Nov 19 14:13:23 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Tue Nov 19 14:13:23 UTC 2024 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Tue Nov 19 14:13:53 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. Tue Nov 19 14:13:53 UTC 2024 I: bioawk_1.0-5_i386.changes: Format: 1.8 Date: Thu, 04 Apr 2024 18:50:00 +0200 Source: bioawk Binary: bioawk bioawk-dbgsym Architecture: i386 Version: 1.0-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Santiago Vila Description: bioawk - extension of awk for biological sequence analysis Closes: 1068341 Changes: bioawk (1.0-5) unstable; urgency=medium . * Team upload. [ Nilesh Patra ] * Remove myself from uploaders. [ Santiago Vila ] * debian/rules: Add --no-parallel to avoid the effects of a Makefile bug which makes the package to FTBFS randomly. Closes: #1068341. Checksums-Sha1: 7a96b997588feb816d2c9cae581c00afaeef47d0 109288 bioawk-dbgsym_1.0-5_i386.deb 4255a5910968874766283c1e67175a9833e40482 4929 bioawk_1.0-5_i386.buildinfo 2b6642b73c71a9ad1e8b04732d9f3cf44ea60be9 60912 bioawk_1.0-5_i386.deb Checksums-Sha256: e5fb82dcdbbbdd070119341202a810184af92b0ee7681fbb38aa250e448381e6 109288 bioawk-dbgsym_1.0-5_i386.deb 6162e3d028b33fb96f14298b1ab3b4e6a40b5c05bef8b4f17b369f67486a3060 4929 bioawk_1.0-5_i386.buildinfo 12126049e11ec4623d5ee892ef11052066bfefd298ce374a98e34cb5f9bb8860 60912 bioawk_1.0-5_i386.deb Files: 72a620476642e3532c8d79536c28aca2 109288 debug optional bioawk-dbgsym_1.0-5_i386.deb cc78a459d25b32bef0c6a3256cac2ed8 4929 science optional bioawk_1.0-5_i386.buildinfo 639e88f2a5e4b4672b0064b6e8ac8926 60912 science optional bioawk_1.0-5_i386.deb Tue Nov 19 14:13:54 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_12-29255.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.VN00fuOV/bioawk_1.0-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.VN00fuOV/bioawk_1.0-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.VN00fuOV/bioawk_1.0-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.VN00fuOV/b1/bioawk_1.0-5_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.VN00fuOV/b2/bioawk_1.0-5_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.349s) 0.349s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.017s) 0.017s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 659ms CPU time consumed: 658ms Tue Nov 19 14:13:55 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Tue Nov 19 14:13:55 UTC 2024 I: bioawk from trixie built successfully and reproducibly on i386. Tue Nov 19 14:13:56 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Nov 19 14:13:56 UTC 2024 I: Submitting 8.0K b1/bioawk_1.0-5_i386.buildinfo.asc Tue Nov 19 14:13:57 UTC 2024 I: Submitting 8.0K b2/bioawk_1.0-5_i386.buildinfo.asc Tue Nov 19 14:13:58 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Nov 19 14:13:58 UTC 2024 I: Done submitting .buildinfo files. Tue Nov 19 14:13:58 UTC 2024 I: Removing signed bioawk_1.0-5_i386.buildinfo.asc files: removed './b1/bioawk_1.0-5_i386.buildinfo.asc' removed './b2/bioawk_1.0-5_i386.buildinfo.asc'