Fri Apr 26 08:36:16 UTC 2024 I: starting to build barrnap/trixie/i386 on jenkins on '2024-04-26 08:36' Fri Apr 26 08:36:16 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_12/9303/console.log Fri Apr 26 08:36:16 UTC 2024 I: Downloading source for trixie/barrnap=0.9+dfsg-4 --2024-04-26 08:36:16-- http://deb.debian.org/debian/pool/main/b/barrnap/barrnap_0.9%2bdfsg-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2002 (2.0K) [text/prs.lines.tag] Saving to: ‘barrnap_0.9+dfsg-4.dsc’ 0K . 100% 300M=0s 2024-04-26 08:36:16 (300 MB/s) - ‘barrnap_0.9+dfsg-4.dsc’ saved [2002/2002] Fri Apr 26 08:36:16 UTC 2024 I: barrnap_0.9+dfsg-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: barrnap Binary: barrnap Architecture: all Version: 0.9+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss Homepage: http://www.vicbioinformatics.com/software.barrnap.shtml Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/barrnap Vcs-Git: https://salsa.debian.org/med-team/barrnap.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), hmmer, lua5.1, bedtools Package-List: barrnap deb science optional arch=all Checksums-Sha1: c90352d95316d96f016540d1540ec198ecf3beb2 5783936 barrnap_0.9+dfsg.orig.tar.xz f81f6b438cf54cc5dbf4a2e1a69e6ddb0b311e01 702800 barrnap_0.9+dfsg-4.debian.tar.xz Checksums-Sha256: b780182b0154cf44915279bb57c1207b9b0aeb24e779fcd6de1a2b6779e89cc8 5783936 barrnap_0.9+dfsg.orig.tar.xz a6d6b925c2a6667433cc70b76e59e257b7d2792bbff541b68f03c57ae1f715d4 702800 barrnap_0.9+dfsg-4.debian.tar.xz Files: 944eaecec9c2fe9bdf344f6f33071ea6 5783936 barrnap_0.9+dfsg.orig.tar.xz d2ba201aafebc15283958e23556cb1b8 702800 barrnap_0.9+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmUFyCcACgkQPCZ2P2xn 5uJhmhAAjWrsPjrGxxym404LHnL0+iVEXONqACrAt7NuhhmUsXo94ljMx38pLQ8V OBjQ5VoKM14jJOs30Cb2+lBDsz9GzLATNJwJFbbi9ZbYSj21vw7dgsWsR9TxhNYn pfw4ggRFRHFnWa1GmG9+1ULdV3pnQqGZsEd8BEwXvvCtDtQILvP/6xRkFP6r9Mus SaI8SboiNsTkO8NNtI7ZpFnmWffleHeU4n3WXwedesEfToNSmeE0RJrZqlIS0JxW eeSfAS32JHeiQPokGBvO34GAX2ZvvQ8Lg0aZiqyu1VykF5kJE9QRA4KugtFvTfTt AVIP0Ll/FlIErskzXhFsCkvRB6jeERQYR0MxcdB+jknKNNw8j3jF8k3XPrrlGD+d B9qX2ZZQzZSjhXTbzUp7ZcUnu47Qpqx3CVvFx6BnhZ9LMghroSxlbO4JMsdA+Iag SCxc5cTdl0gusXCK7HRICPSa+w56pHgXBpZLtRIQOZPulrkXtvr7BFgHIempbc5B 1Pd8oM3OBZhCeBr2oM/hp5CVDM6Ci3CDn8cSldkIlhd9vBUjrq1O/1CnFlUXvIWs DzRmNZ3GFfkYqwLmFGCQOzZf0XskxV/XkckUuS41YHwpB1787ZlI1/RrJWYQtMvV SWC5hLNCMcecE2iOfB0o0LF/XI/rXM1a0mWdueay5sESP8gUBPo= =ekhv -----END PGP SIGNATURE----- Fri Apr 26 08:36:16 UTC 2024 I: Checking whether the package is not for us Fri Apr 26 08:36:16 UTC 2024 I: Starting 1st build on remote node ionos12-i386.debian.net. Fri Apr 26 08:36:16 UTC 2024 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Fri Apr 26 08:37:04 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Apr 25 20:36:18 -12 2024 I: pbuilder-time-stamp: 1714120578 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [barrnap_0.9+dfsg-4.dsc] I: copying [./barrnap_0.9+dfsg.orig.tar.xz] I: copying [./barrnap_0.9+dfsg-4.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Sep 16 15:22:15 2023 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./barrnap_0.9+dfsg-4.dsc: no acceptable signature found dpkg-source: info: extracting barrnap in barrnap-0.9+dfsg dpkg-source: info: unpacking barrnap_0.9+dfsg.orig.tar.xz dpkg-source: info: unpacking barrnap_0.9+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying update_dbs dpkg-source: info: applying use_debian_dirs I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/60063/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='189ae6660d7b4ff2a90210a5b3f9a941' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='60063' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DBlWBIOQ/pbuilderrc_6VI3 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DBlWBIOQ/b1 --logfile b1/build.log barrnap_0.9+dfsg-4.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 21 07:12 /bin -> usr/bin I: user script /srv/workspace/pbuilder/60063/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), hmmer, lua5.1, bedtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19882 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on hmmer; however: Package hmmer is not installed. pbuilder-satisfydepends-dummy depends on lua5.1; however: Package lua5.1 is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hmmer{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libdivsufsort3{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libreadline8t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} lua5.1{a} m4{a} man-db{a} po-debconf{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 21.5 MB of archives. After unpacking 83.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-4 [69.3 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-2+b1 [314 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 libmagic1 i386 1:5.45-2+b1 [114 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-2+b1 [43.0 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-3+b1 [1195 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.39.3-6 [93.3 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 man-db i386 2.12.0-3 [1413 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 autoconf all 2.71-3 [332 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 autopoint all 0.21-14 [496 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 bedtools i386 2.31.1+dfsg-2 [745 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 25 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-1+b1 [194 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.9.14+dfsg-1.3+b2 [727 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 debhelper all 13.15.3 [901 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libdivsufsort3 i386 2.0.1-6 [48.9 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 hmmer i386 3.4+dfsg-2 [1094 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-4 [171 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 lua5.1 i386 5.1.5-9+b2 [112 kB] Fetched 21.5 MB in 0s (49.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19882 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../03-libmagic1_1%3a5.45-2+b1_i386.deb ... Unpacking libmagic1:i386 (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-2+b1_i386.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../06-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-3+b1_i386.deb ... Unpacking groff-base (1.23.0-3+b1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.39.3-6_i386.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../09-libpipeline1_1.5.7-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.12.0-3_i386.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package bedtools. Preparing to unpack .../16-bedtools_2.31.1+dfsg-2_i386.deb ... Unpacking bedtools (2.31.1+dfsg-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../21-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../24-libelf1t64_0.191-1+b1_i386.deb ... Unpacking libelf1t64:i386 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../26-libicu72_72.1-4+b1_i386.deb ... Unpacking libicu72:i386 (72.1-4+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../27-libxml2_2.9.14+dfsg-1.3+b2_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.21-14+b1_i386.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package libdivsufsort3:i386. Preparing to unpack .../32-libdivsufsort3_2.0.1-6_i386.deb ... Unpacking libdivsufsort3:i386 (2.0.1-6) ... Selecting previously unselected package hmmer. Preparing to unpack .../33-hmmer_3.4+dfsg-2_i386.deb ... Unpacking hmmer (3.4+dfsg-2) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../34-libreadline8t64_8.2-4_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-4) ... Selecting previously unselected package lua5.1. Preparing to unpack .../35-lua5.1_5.1.5-9+b2_i386.deb ... Unpacking lua5.1 (5.1.5-9+b2) ... Setting up libpipeline1:i386 (1.5.7-2) ... Setting up libicu72:i386 (72.1-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1:i386 (1:5.45-2+b1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up libelf1t64:i386 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libdivsufsort3:i386 (2.0.1-6) ... Setting up readline-common (8.2-4) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b2) ... Setting up bedtools (2.31.1+dfsg-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:i386 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up hmmer (3.4+dfsg-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up lua5.1 (5.1.5-9+b2) ... update-alternatives: using /usr/bin/lua5.1 to provide /usr/bin/lua (lua-interpreter) in auto mode update-alternatives: using /usr/bin/luac5.1 to provide /usr/bin/luac (lua-compiler) in auto mode Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.37-18) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/barrnap-0.9+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../barrnap_0.9+dfsg-4_source.changes dpkg-buildpackage: info: source package barrnap dpkg-buildpackage: info: source version 0.9+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean make -j11 clean make[1]: Entering directory '/build/reproducible-path/barrnap-0.9+dfsg' rm -f *~ core foo DEADJOE make[1]: Leaving directory '/build/reproducible-path/barrnap-0.9+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/barrnap-0.9+dfsg' # pass make[1]: Leaving directory '/build/reproducible-path/barrnap-0.9+dfsg' dh_auto_test make -j11 test make[1]: Entering directory '/build/reproducible-path/barrnap-0.9+dfsg' ./bin/barrnap examples/small.fna [barrnap] This is barrnap 0.9 [barrnap] Written by Torsten Seemann [barrnap] Obtained from https://github.com/tseemann/barrnap [barrnap] Detected operating system: linux [barrnap] Adding /build/reproducible-path/barrnap-0.9+dfsg/bin/../binaries/linux to end of PATH [barrnap] Checking for dependencies: [barrnap] Found nhmmer - /usr/bin/nhmmer [barrnap] Found bedtools - /usr/bin/bedtools [barrnap] Will use 1 threads [barrnap] Setting evalue cutoff to 1e-06 [barrnap] Will tag genes < 0.8 of expected length. [barrnap] Will reject genes < 0.25 of expected length. [barrnap] Using database: /build/reproducible-path/barrnap-0.9+dfsg/bin/../db/bac.hmm [barrnap] Scanning examples/small.fna for bac rRNA genes... please wait [barrnap] Command: nhmmer --cpu 1 -E 1e-06 --w_length 3878 -o /dev/null --tblout /dev/stdout '/build/reproducible-path/barrnap-0.9+dfsg/bin/../db/bac.hmm' 'examples/small.fna' [barrnap] Found: 16S_rRNA P.marinus L=1480/1585 353314..354793 + 16S ribosomal RNA [barrnap] Found: 23S_rRNA P.marinus L=2871/3232 355464..358334 + 23S ribosomal RNA [barrnap] Found: 5S_rRNA P.marinus L=113/119 358433..358545 + 5S ribosomal RNA [barrnap] Found 3 ribosomal RNA features. [barrnap] Sorting features and outputting GFF3... [barrnap] Done. ##gff-version 3 P.marinus barrnap:0.9 rRNA 353314 354793 0 + . Name=16S_rRNA;product=16S ribosomal RNA P.marinus barrnap:0.9 rRNA 355464 358334 0 + . Name=23S_rRNA;product=23S ribosomal RNA P.marinus barrnap:0.9 rRNA 358433 358545 1.4e-12 + . Name=5S_rRNA;product=5S ribosomal RNA make[1]: Leaving directory '/build/reproducible-path/barrnap-0.9+dfsg' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/barrnap-0.9+dfsg' # pass make[1]: Leaving directory '/build/reproducible-path/barrnap-0.9+dfsg' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package barrnap: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'barrnap' in '../barrnap_0.9+dfsg-4_all.deb'. dpkg-genbuildinfo --build=binary -O../barrnap_0.9+dfsg-4_i386.buildinfo dpkg-genchanges --build=binary -O../barrnap_0.9+dfsg-4_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/60063 and its subdirectories I: Current time: Thu Apr 25 20:37:03 -12 2024 I: pbuilder-time-stamp: 1714120623 Fri Apr 26 08:37:04 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Fri Apr 26 08:37:04 UTC 2024 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Fri Apr 26 08:37:37 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. Fri Apr 26 08:37:38 UTC 2024 I: barrnap_0.9+dfsg-4_i386.changes: Format: 1.8 Date: Sat, 16 Sep 2023 16:36:40 +0200 Source: barrnap Binary: barrnap Architecture: all Version: 0.9+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: barrnap - rapid ribosomal RNA prediction Changes: barrnap (0.9+dfsg-4) unstable; urgency=medium . * Team upload. * d/patches/use_both_hmmsets: not needed since before 0.7+dfsg-1 * d/tests/control: hmmer is now available on arm64/armhf; test there as well. * d/patches/update_dbs: refresh the databases using the latest SILVA database which is DFSG compliant (CC-BY-4.0). * d/copyright: document the provenance and licensing for d/patches/update_dbs; update homepage URL * d/patches/use_debian_dirs: document author, no need to forward upstream Checksums-Sha1: c447d819ce3e3e7c18df7c9ec9c1cae3d57a91bb 525908 barrnap_0.9+dfsg-4_all.deb 791e9ca4ae68973dc6ab537cf72250e708766fd7 4961 barrnap_0.9+dfsg-4_i386.buildinfo Checksums-Sha256: 6f1c68a498e4a407e0eb99b619760299741120b3856a6b60d6c307ac92564034 525908 barrnap_0.9+dfsg-4_all.deb 3ad3c70ac113734a2b6a3aa591fcbdab026bea057ea2345fbb05bd9636a303c0 4961 barrnap_0.9+dfsg-4_i386.buildinfo Files: 5c40cf562d19381e96be68d0bcdddeaf 525908 science optional barrnap_0.9+dfsg-4_all.deb 600daad424134a5b8e56c1e11f159f19 4961 science optional barrnap_0.9+dfsg-4_i386.buildinfo Fri Apr 26 08:37:39 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_12-9303.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.DBlWBIOQ/barrnap_0.9+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.DBlWBIOQ/barrnap_0.9+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.DBlWBIOQ/barrnap_0.9+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.DBlWBIOQ/b1/barrnap_0.9+dfsg-4_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.DBlWBIOQ/b2/barrnap_0.9+dfsg-4_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.751s) 0.751s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.022s) 0.022s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1.433s CPU time consumed: 1.046s Fri Apr 26 08:37:42 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Fri Apr 26 08:37:42 UTC 2024 I: barrnap from trixie built successfully and reproducibly on i386. Fri Apr 26 08:37:45 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Apr 26 08:37:45 UTC 2024 I: Submitting 8.0K b1/barrnap_0.9+dfsg-4_i386.buildinfo.asc Fri Apr 26 08:37:47 UTC 2024 I: Submitting 8.0K b2/barrnap_0.9+dfsg-4_i386.buildinfo.asc Fri Apr 26 08:37:50 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Apr 26 08:37:50 UTC 2024 I: Done submitting .buildinfo files. Fri Apr 26 08:37:50 UTC 2024 I: Removing signed barrnap_0.9+dfsg-4_i386.buildinfo.asc files: removed './b1/barrnap_0.9+dfsg-4_i386.buildinfo.asc' removed './b2/barrnap_0.9+dfsg-4_i386.buildinfo.asc'