Fri Oct 25 19:58:07 UTC 2024 I: starting to build atropos/trixie/i386 on jenkins on '2024-10-25 19:57' Fri Oct 25 19:58:07 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_7/44392/console.log Fri Oct 25 19:58:07 UTC 2024 I: Downloading source for trixie/atropos=1.1.32+dfsg-2 --2024-10-25 19:58:07-- http://deb.debian.org/debian/pool/main/a/atropos/atropos_1.1.32%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2234 (2.2K) [text/prs.lines.tag] Saving to: ‘atropos_1.1.32+dfsg-2.dsc’ 0K .. 100% 303M=0s 2024-10-25 19:58:07 (303 MB/s) - ‘atropos_1.1.32+dfsg-2.dsc’ saved [2234/2234] Fri Oct 25 19:58:07 UTC 2024 I: atropos_1.1.32+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: atropos Binary: atropos Architecture: any Version: 1.1.32+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/jdidion/atropos Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/atropos Vcs-Git: https://salsa.debian.org/med-team/atropos.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-pytest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-all-dev, python3-setuptools, python3-setuptools-scm, python3-wheel, python3-loguru, python3-xphyle, python3-pytest , python3-jinja2 , python3-pysam Package-List: atropos deb science optional arch=any Checksums-Sha1: dc01c3a946454c29bd092ab6a12fe63681f95c73 3116652 atropos_1.1.32+dfsg.orig.tar.xz f5573ed2b77f40e463b24162d2f656f4eb0a99f5 6800 atropos_1.1.32+dfsg-2.debian.tar.xz Checksums-Sha256: efb5aef489afa25b1e3990d0320d1fedb32d84147c52bcf67cd9759170da0eed 3116652 atropos_1.1.32+dfsg.orig.tar.xz 691210b4b544206b89d4f979713002f19e3e6bc4fef07cd0289782b96ccdd77f 6800 atropos_1.1.32+dfsg-2.debian.tar.xz Files: feac304ad9679649959f69ace8899da1 3116652 atropos_1.1.32+dfsg.orig.tar.xz cd7c6edbbe1d3eee2bc386c019e378a7 6800 atropos_1.1.32+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmap/f4ACgkQPCZ2P2xn 5uKaaxAAwIg8RXnOn2okS7GKO+sU3VfpTVAg9KFrHNtbrVAuoPqlyrAGMOUpCrKl mBP/1jofjWRZ2Kh5aFMXxegNm8bMFdKeKT0XaDXaTOnhU6XH3qmOKkVn8ocJ/x+u +YF+37Ouu7za3vANfqS3CXpLWNBxDOf6+apXMTh6Sy0XeaEqlZMYVFkS1CL1qIQl xdTnvZIlYGCTWk6sTGSlwi+4QBnjV90n5rs+jxbZhidzedgs8D7c5OR57MinQhTq iwdB6xyZjZYgbJM0M5QQad/Zcs/tGFu/zvCJepyNoE0yTcL9KbReJ57FDXAG1WYl 8RMS7hxzAPF5lI+NOm6LR4vVTu/m7XJS7TAXgQ2RvwKrOeTj5fL4uSiZzffluuQ5 ZLF0AQWjisGk1rMLNSmM6lK1dL9diKPFWaOBLy8xzZGl6YTWM5cMC514jYgaIe5T GngeJOstEtt2iU4ULeDj7CcGWSUvvImK0FDcioox5QuM42GAl6zhU6vqC1Te4e6K 9PCPLh5kAfsq6rBCm2a6kjRUBr1eD8OABUdw8pvmLtLWB93NmA18/IMQPTghDU5G g+14+UbEK2F3qT/9JrP7RLeOcN0s75Hx2W5vHDA9Rl5zNOg4wCatVm59lEvbGpLW NLtG3ITKC8L7H8a3AzgPhJ5qHbKqYoMPmNUooEOS+C4z+xgrlmY= =LrLO -----END PGP SIGNATURE----- Fri Oct 25 19:58:07 UTC 2024 I: Checking whether the package is not for us Fri Oct 25 19:58:07 UTC 2024 I: Starting 1st build on remote node ionos12-i386.debian.net. Fri Oct 25 19:58:07 UTC 2024 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Fri Oct 25 20:00:13 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 25 07:58:09 -12 2024 I: pbuilder-time-stamp: 1729886289 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [atropos_1.1.32+dfsg-2.dsc] I: copying [./atropos_1.1.32+dfsg.orig.tar.xz] I: copying [./atropos_1.1.32+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Jul 31 09:03:58 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./atropos_1.1.32+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting atropos in atropos-1.1.32+dfsg dpkg-source: info: unpacking atropos_1.1.32+dfsg.orig.tar.xz dpkg-source: info: unpacking atropos_1.1.32+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_install_depends_cython.patch dpkg-source: info: applying cy3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/9326/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='b6135904f5d240149bca782648eaf8cb' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='9326' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DqOyLqwn/pbuilderrc_2jN8 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DqOyLqwn/b1 --logfile b1/build.log atropos_1.1.32+dfsg-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/9326/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-all-dev, python3-setuptools, python3-setuptools-scm, python3-wheel, python3-loguru, python3-xphyle, python3-pytest, python3-jinja2, python3-pysam dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm; however: Package python3-setuptools-scm is not installed. pbuilder-satisfydepends-dummy depends on python3-wheel; however: Package python3-wheel is not installed. pbuilder-satisfydepends-dummy depends on python3-loguru; however: Package python3-loguru is not installed. pbuilder-satisfydepends-dummy depends on python3-xphyle; however: Package python3-xphyle is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-jinja2; however: Package python3-jinja2 is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libpipeline1{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-colorama{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jinja2{a} python3-loguru{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pokrok{a} python3-pysam{a} python3-pytest{a} python3-setuptools{a} python3-setuptools-scm{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-xphyle{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-babel python3-pygments wget 0 packages upgraded, 104 newly installed, 0 to remove and 0 not upgraded. Need to get 47.2 MB of archives. After unpacking 202 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.6-1 [813 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.3-1 [107 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.6-1 [2242 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.1-1 [23.1 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get: 12 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 libtirpc3t64 i386 1.3.4+ds-1.3 [90.2 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libnsl2 i386 1.3.0-3+b2 [42.4 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-5 [173 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.6-1 [1961 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.6-1 [669 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main i386 python3 i386 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3 [42.9 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-9 [102 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 cython3 i386 3.0.11+dfsg-1 [2429 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-7 [517 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 45 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.191-2 [194 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5 [9550 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.1 [733 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 59 http://deb.debian.org/debian trixie/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 python3-zipp all 3.20.2-1 [10.3 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 74.1.2-2 [736 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20240824 [109 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b4 [309 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3+b1 [200 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.63.0-1 [82.7 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libnghttp3-9 i386 1.4.0-1 [74.3 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libngtcp2-16 i386 1.6.0-1 [154 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 libngtcp2-crypto-gnutls8 i386 1.6.0-1 [20.2 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 libcurl3t64-gnutls i386 8.10.1-2 [400 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.22-1 [48.1 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 libexpat1-dev i386 2.6.3-1 [164 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 libhtscodecs2 i386 1.6.1-1 [70.8 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 libhts3t64 i386 1.20+ds-1 [495 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 libjs-sphinxdoc all 7.4.7-3 [158 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 libpython3.12t64 i386 3.12.6-1 [2168 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1 [915 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 libpython3.12-dev i386 3.12.6-1 [5284 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 libpython3-dev i386 3.12.6-1 [9956 B] Get: 87 http://deb.debian.org/debian trixie/main i386 libpython3-all-dev i386 3.12.6-1 [1068 B] Get: 88 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.12.6-1 [1040 B] Get: 89 http://deb.debian.org/debian trixie/main i386 python3.12-dev i386 3.12.6-1 [506 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 python3-dev i386 3.12.6-1 [26.1 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 python3-all-dev i386 3.12.6-1 [1068 B] Get: 92 http://deb.debian.org/debian trixie/main i386 python3-colorama all 0.4.6-4 [36.2 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 94 http://deb.debian.org/debian trixie/main i386 python3-markupsafe i386 2.1.5-1+b1 [13.7 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 python3-jinja2 all 3.1.3-1 [119 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 python3-loguru all 0.7.2-3 [58.4 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 python3-packaging all 24.1-1 [45.8 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 python3-pokrok all 0.2.0-5 [11.3 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 python3-pysam i386 0.22.1+ds-2+b1 [3519 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 python3-pytest all 8.3.3-1 [249 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 python3-setuptools-scm all 8.1.0-1 [40.5 kB] Get: 103 http://deb.debian.org/debian trixie/main i386 python3-wheel all 0.44.0-2 [53.4 kB] Get: 104 http://deb.debian.org/debian trixie/main i386 python3-xphyle all 4.4.4-5 [52.2 kB] Fetched 47.2 MB in 1s (44.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19932 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.6-1_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.6-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.3-1_i386.deb ... Unpacking libexpat1:i386 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.6-1_i386.deb ... Unpacking python3.12-minimal (3.12.6-1) ... Setting up libpython3.12-minimal:i386 (3.12.6-1) ... Setting up libexpat1:i386 (2.6.3-1) ... Setting up python3.12-minimal (3.12.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20252 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_i386.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../04-libkrb5support0_1.21.3-3_i386.deb ... Unpacking libkrb5support0:i386 (1.21.3-3) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../05-libcom-err2_1.47.1-1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../06-libk5crypto3_1.21.3-3_i386.deb ... Unpacking libk5crypto3:i386 (1.21.3-3) ... 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Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3 to /lib/i386-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3.0.0 to /lib/i386-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:i386 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:i386. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_i386.deb ... Unpacking libnsl2:i386 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../14-libreadline8t64_8.2-5_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:i386. Preparing to unpack .../15-libpython3.12-stdlib_3.12.6-1_i386.deb ... Unpacking libpython3.12-stdlib:i386 (3.12.6-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.6-1_i386.deb ... Unpacking python3.12 (3.12.6-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21324 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.6-1_i386.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sensible-utils. 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Selecting previously unselected package libngtcp2-crypto-gnutls8:i386. Preparing to unpack .../49-libngtcp2-crypto-gnutls8_1.6.0-1_i386.deb ... Unpacking libngtcp2-crypto-gnutls8:i386 (1.6.0-1) ... Selecting previously unselected package libpsl5t64:i386. Preparing to unpack .../50-libpsl5t64_0.21.2-1.1_i386.deb ... Unpacking libpsl5t64:i386 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../51-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:i386. Preparing to unpack .../52-libssh2-1t64_1.11.1-1_i386.deb ... Unpacking libssh2-1t64:i386 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:i386. Preparing to unpack .../53-libcurl3t64-gnutls_8.10.1-2_i386.deb ... Unpacking libcurl3t64-gnutls:i386 (8.10.1-2) ... Selecting previously unselected package libdeflate0:i386. 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Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up libldap-2.5-0:i386 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-3) ... Setting up libreadline8t64:i386 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libtirpc3t64:i386 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3t64-gnutls:i386 (8.10.1-2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:i386 (1.3.0-3+b2) ... Setting up libhts3t64:i386 (1.20+ds-1) ... Setting up libpython3.12-stdlib:i386 (3.12.6-1) ... Setting up python3.12 (3.12.6-1) ... Setting up debhelper (13.20) ... Setting up libpython3.12t64:i386 (3.12.6-1) ... Setting up libpython3-stdlib:i386 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up libpython3.12-dev:i386 (3.12.6-1) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-markupsafe (2.1.5-1+b1) ... Setting up python3-wheel (0.44.0-2) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.1-1) ... Setting up python3.12-dev (3.12.6-1) ... Setting up cython3 (3.0.11+dfsg-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-pysam (0.22.1+ds-2+b1) ... Setting up libpython3-dev:i386 (3.12.6-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-loguru (0.7.2-3) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up libpython3-all-dev:i386 (3.12.6-1) ... Setting up python3-dev (3.12.6-1) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-all-dev (3.12.6-1) ... Setting up python3-pokrok (0.2.0-5) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-setuptools-scm (8.1.0-1) ... Setting up python3-xphyle (4.4.4-5) ... Setting up dh-python (6.20240824) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/atropos-1.1.32+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../atropos_1.1.32+dfsg-2_source.changes dpkg-buildpackage: info: source package atropos dpkg-buildpackage: info: source version 1.1.32+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/atropos-1.1.32+dfsg' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean /build/reproducible-path/atropos-1.1.32+dfsg/versioneer.py:494: SyntaxWarning: invalid escape sequence '\s' ] = ''' /usr/lib/python3/dist-packages/setuptools/dist.py:452: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf .pytest_cache rm -rf atropos.egg-info rm -f atropos/align/_align.c atropos/commands/trim/_qualtrim.c atropos/io/_seqio.c make[1]: Leaving directory '/build/reproducible-path/atropos-1.1.32+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /build/reproducible-path/atropos-1.1.32+dfsg/versioneer.py:494: SyntaxWarning: invalid escape sequence '\s' ] = ''' /usr/lib/python3/dist-packages/setuptools/dist.py:452: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:452: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests copying tests/test_paired.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests copying tests/test_xopen.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests copying tests/test_seqio.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests copying tests/test_modifiers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests copying tests/test_commands.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests copying tests/test_adapters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests copying tests/test_multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests copying tests/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests copying tests/test_atropos.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests copying tests/utils.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests copying tests/test_align.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests copying tests/test_trim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests copying tests/test_filters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests copying tests/test_qualtrim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests copying tests/test_colorspace.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos copying atropos/_version.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos copying atropos/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/align copying atropos/align/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/align creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands copying atropos/commands/stats.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands copying atropos/commands/multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands copying atropos/commands/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands copying atropos/commands/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands copying atropos/commands/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands copying atropos/commands/legacy_report.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands copying atropos/commands/base.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/adapters copying atropos/adapters/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/adapters creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/io copying atropos/io/compression.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/io copying atropos/io/seqio.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/io copying atropos/io/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/io copying atropos/io/progress.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/io creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/util copying atropos/util/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/util copying atropos/util/colorspace.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/util creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/qc copying atropos/commands/qc/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/qc copying atropos/commands/qc/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/qc copying atropos/commands/qc/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/qc creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/detect copying atropos/commands/detect/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/detect copying atropos/commands/detect/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/detect copying atropos/commands/detect/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/detect creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/error copying atropos/commands/error/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/error copying atropos/commands/error/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/error copying atropos/commands/error/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/error creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim copying atropos/commands/trim/modifiers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim copying atropos/commands/trim/multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim copying atropos/commands/trim/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim copying atropos/commands/trim/writers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim copying atropos/commands/trim/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim copying atropos/commands/trim/filters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim copying atropos/commands/trim/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim copying atropos/commands/trim/qualtrim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim copying atropos/adapters/sequencing_adapters.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/adapters UPDATING /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/_version.py set /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/_version.py to '1.1.32' running build_ext /build/reproducible-path/atropos-1.1.32+dfsg/setup.py:84: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION): Compiling atropos/align/_align.pyx because it changed. Compiling atropos/commands/trim/_qualtrim.pyx because it changed. Compiling atropos/io/_seqio.pyx because it changed. [1/3] Cythonizing atropos/align/_align.pyx [2/3] Cythonizing atropos/commands/trim/_qualtrim.pyx [3/3] Cythonizing atropos/io/_seqio.pyx building 'atropos.align._align' extension creating build creating build/temp.linux-i686-cpython-312 creating build/temp.linux-i686-cpython-312/atropos creating build/temp.linux-i686-cpython-312/atropos/align i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c atropos/align/_align.c -o build/temp.linux-i686-cpython-312/atropos/align/_align.o i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/atropos/align/_align.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/align/_align.cpython-312-i386-linux-gnu.so building 'atropos.commands.trim._qualtrim' extension creating build/temp.linux-i686-cpython-312/atropos/commands creating build/temp.linux-i686-cpython-312/atropos/commands/trim i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c atropos/commands/trim/_qualtrim.c -o build/temp.linux-i686-cpython-312/atropos/commands/trim/_qualtrim.o i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/atropos/commands/trim/_qualtrim.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim/_qualtrim.cpython-312-i386-linux-gnu.so building 'atropos.io._seqio' extension creating build/temp.linux-i686-cpython-312/atropos/io i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c atropos/io/_seqio.c -o build/temp.linux-i686-cpython-312/atropos/io/_seqio.o i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/atropos/io/_seqio.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/io/_seqio.cpython-312-i386-linux-gnu.so running build_scripts creating build/scripts-3.12 copying and adjusting bin/atropos -> build/scripts-3.12 changing mode of build/scripts-3.12/atropos from 644 to 755 debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/atropos-1.1.32+dfsg' \ dh_auto_test -- --before-test="ln -s /build/reproducible-path/atropos-1.1.32+dfsg/tests/cut {build_dir}/tests && ln -s /build/reproducible-path/atropos-1.1.32+dfsg/tests/data {build_dir}/tests" I: pybuild pybuild:308: ln -s /build/reproducible-path/atropos-1.1.32+dfsg/tests/cut /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests && ln -s /build/reproducible-path/atropos-1.1.32+dfsg/tests/data /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests I: pybuild base:311: cd /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.6, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build configfile: pytest.ini plugins: typeguard-4.3.0 collected 222 items tests/test_adapters.py ........ [ 3%] tests/test_align.py ................ [ 10%] tests/test_atropos.py .................................................. [ 33%] ............................s [ 46%] tests/test_colorspace.py ................. [ 54%] tests/test_commands.py . [ 54%] tests/test_filters.py .. [ 55%] tests/test_modifiers.py .................... [ 64%] tests/test_multicore.py ..... [ 66%] tests/test_paired.py ................................ [ 81%] tests/test_qualtrim.py . [ 81%] tests/test_seqio.py ................................... [ 97%] tests/test_trim.py .. [ 98%] tests/test_xopen.py .... [100%] =============================== warnings summary =============================== tests/test_paired.py:638 /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/test_paired.py:638: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.timeout(10) tests/test_paired.py::test_no_writer_process tests/test_paired.py::test_no_writer_process tests/test_paired.py::test_summary tests/test_paired.py::test_summary /usr/lib/python3.12/multiprocessing/popen_fork.py:66: DeprecationWarning: This process (pid=15650) is multi-threaded, use of fork() may lead to deadlocks in the child. self.pid = os.fork() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 221 passed, 1 skipped, 5 warnings in 33.35s ================== make[1]: Leaving directory '/build/reproducible-path/atropos-1.1.32+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/atropos/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos /usr/lib/python3/dist-packages/setuptools/dist.py:452: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py UPDATING /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/_version.py set /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/_version.py to '1.1.32' running build_ext /build/reproducible-path/atropos-1.1.32+dfsg/setup.py:84: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION): running build_scripts running install_lib creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12 creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/.pytest_cache/README.md -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/.pytest_cache/.gitignore -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/.pytest_cache creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/.pytest_cache/v creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/.adapters -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/test_paired.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/test_xopen.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/test_seqio.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/test_modifiers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/back_repeat.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/tooshort.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/rest.txt -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/paired_bis_adapter.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/polya.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/overlapa.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/wildcard_adapter.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/illumina64.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/multiblock.fastq.gz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/solid5p.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/E3M.qual -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/rest.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/overlapb.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/solid.qual -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/dos.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/issue68.1.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/small.fastq.xz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/bad_bases.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/twoadapters.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/wildcardN.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/anchored.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/withplus.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/trimN5.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/toolong.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/simple.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/issue46.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/prefix-adapter.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/plus.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/trimN3.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/restfront.txt -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/maxn.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/small.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/lowq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/back_repeat.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/tooshort.noprimer.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/adapter.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/paired.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/solid.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/anchored-back.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/empty.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/big.1.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/linked.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/paired_bis_insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/highq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/small.fastq.gz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/wildcard.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/s_1_sequence.txt.gz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/454.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/E3M.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/small.myownextension -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/simple.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/paired_bis_adapter.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/issue68.2.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/sra.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/no_indels.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/suffix-adapter.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/anywhere_repeat.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/lengths.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/paired_bis_insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/anchored_no_indels.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/illumina5.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/lowqual.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/solid.csfasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/nextseq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/small.fastq.bz2 -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/solid5p.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/solid.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/example.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/big.2.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/paired.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/interleaved.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/data/illumina.fastq.gz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/test_commands.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/test_adapters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/test_multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/test_atropos.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/utils.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired-filterboth_adapter.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/back_repeat.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired_bis2_insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired-trimmed.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/polya.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/maxn1.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired_bis1_insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/overlapa.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/wildcard_adapter.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/illumina64.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired_bis2_insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/solid5p.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/small_mincut1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/lowercase.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/rest.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/overlapb.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/small.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/dos.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/issue68.1.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/twoadapters.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/wildcardN.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/anchored.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired-filterboth.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/maxn2.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/examplefront.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/suffix.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/trimN5.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/pairedq.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired-m27.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/pairedq.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired-filterboth_adapter.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired-filterboth_insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired-untrimmed.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired_bis2_adapter.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/twoadapters.second.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired-onlyA.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/issue46.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/plus.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/trimN3.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/small.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/lowq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/small_mincut2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/back_repeat.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/illumina.info.txt -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired-filterboth_insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired_insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/solid.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired-separate.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/anchored-back.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/solid-no-zerocap.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/empty.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired-untrimmed.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/maxn0.2.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/linked.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/illumina5.info.txt -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/solidqual.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/minlen.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/highq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/wildcard.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired_bis1_insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired-m27.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/454.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/maxn0.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/solid5p-anchored.notrim.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/pairedu.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/solidbfast.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired-trimmed.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired-too-short.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/solidmaq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/no-trim.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/issue68.2.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/unconditional-front.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/illumina.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/sra.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired_bis2_adapter.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/solid5p-anchored.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired_adapter.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/solid5p-anchored.notrim.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/no_indels.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/anywhere_repeat.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired_bis1_adapter.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/discard-untrimmed.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired-too-short.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/anchored_no_indels.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/empty.fastq.gz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/maxlen.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/stripped.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired_insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired_bis1_adapter.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/illumina5.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/restfront.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/small_mincut3.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/lowqual.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/s_1_sequence.txt -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/minlen.noprimer.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired-filterboth.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/discard.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/pairedu.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/maxn0.4.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/nextseq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/solid5p.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/unconditional-both.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/anchored_no_indels_wildcard.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired.m14.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired-separate.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/unconditional-back.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/solid.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/example.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired.m14.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/solid5p-anchored.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/twoadapters.unknown.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/interleaved.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/SRR2040662_trimmed.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/twoadapters.first.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired_adapter.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/paired-onlyA.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/small.trimmed.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/wildcard_adapter_anywhere.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/cut/small.untrimmed.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/cut creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/__pycache__/test_adapters.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/__pycache__/test_trim.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/__pycache__/test_paired.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/__pycache__/test_qualtrim.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/__pycache__/test_seqio.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/__pycache__/test_xopen.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/__pycache__/test_align.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/__pycache__/test_multicore.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/__pycache__/test_modifiers.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/__pycache__/test_atropos.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/__pycache__/test_filters.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/__pycache__/test_colorspace.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/__pycache__/test_commands.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/test_align.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/test_trim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/test_filters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/test_qualtrim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/tests/test_colorspace.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/align copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/align/_align.cpython-312-i386-linux-gnu.so -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/align copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/align/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/align creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/align/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/align/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/align/__pycache__ creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/stats.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/qc copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/qc/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/qc copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/qc/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/qc copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/qc/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/qc creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/qc/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/qc/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/qc/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/qc/__pycache__/cli.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/qc/__pycache__ creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/detect copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/detect/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/detect copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/detect/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/detect copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/detect/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/detect creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/detect/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/detect/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/detect/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/detect/__pycache__/cli.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/detect/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/error copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/error/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/error copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/error/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/error copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/error/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/error creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/error/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/error/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/error/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/error/__pycache__/cli.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/error/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim/modifiers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim/_qualtrim.cpython-312-i386-linux-gnu.so -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim/multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim/writers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim/filters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim/__pycache__/filters.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim/__pycache__/multicore.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim/__pycache__/reports.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim/__pycache__/modifiers.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim/__pycache__/qualtrim.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim/__pycache__/cli.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim/__pycache__/writers.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/trim/qualtrim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/legacy_report.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/base.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/__pycache__/multicore.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/__pycache__/reports.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/__pycache__/stats.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/__pycache__/base.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/__pycache__/legacy_report.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/commands/__pycache__/cli.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/_version.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/__pycache__/_version.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/__pycache__ creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/adapters copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/adapters/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/adapters creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/adapters/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/adapters/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/adapters/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/adapters/sequencing_adapters.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/adapters creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/io copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/io/compression.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/io copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/io/seqio.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/io copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/io/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/io copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/io/_seqio.cpython-312-i386-linux-gnu.so -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/io copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/io/progress.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/io creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/io/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/io/__pycache__/compression.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/io/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/io/__pycache__/seqio.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/io/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/io/__pycache__ creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/util copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/util/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/util copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/util/colorspace.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/util creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/util/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/util/__pycache__/colorspace.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/util/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.12/build/atropos/util/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/util/__pycache__ byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/test_paired.py to test_paired.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/test_xopen.py to test_xopen.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/test_seqio.py to test_seqio.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/test_modifiers.py to test_modifiers.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/test_commands.py to test_commands.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/test_adapters.py to test_adapters.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/test_multicore.py to test_multicore.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/test_atropos.py to test_atropos.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/utils.py to utils.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/test_align.py to test_align.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/test_trim.py to test_trim.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/test_filters.py to test_filters.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/test_qualtrim.py to test_qualtrim.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/tests/test_colorspace.py to test_colorspace.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/align/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/stats.py to stats.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/multicore.py to multicore.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/cli.py to cli.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/qc/cli.py to cli.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/qc/reports.py to reports.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/qc/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/detect/cli.py to cli.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/detect/reports.py to reports.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/detect/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/reports.py to reports.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/error/cli.py to cli.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/error/reports.py to reports.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/error/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim/modifiers.py to modifiers.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim/multicore.py to multicore.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim/cli.py to cli.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim/writers.py to writers.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim/reports.py to reports.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim/filters.py to filters.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/trim/qualtrim.py to qualtrim.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/legacy_report.py to legacy_report.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/commands/base.py to base.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/_version.py to _version.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/adapters/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/io/compression.py to compression.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/io/seqio.py to seqio.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/io/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/io/progress.py to progress.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/util/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos/util/colorspace.py to colorspace.cpython-312.pyc running install_egg_info running egg_info creating atropos.egg-info writing atropos.egg-info/PKG-INFO writing dependency_links to atropos.egg-info/dependency_links.txt writing requirements to atropos.egg-info/requires.txt writing top-level names to atropos.egg-info/top_level.txt writing manifest file 'atropos.egg-info/SOURCES.txt' reading manifest file 'atropos.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.rst' warning: no files found matching 'LICENSE.txt' warning: no files found matching 'atropos/report/templates/*' adding license file 'LICENSE' writing manifest file 'atropos.egg-info/SOURCES.txt' Copying atropos.egg-info to /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.12/dist-packages/atropos-1.1.32.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/bin copying build/scripts-3.12/atropos -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/bin changing mode of /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/bin/atropos to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/atropos-1.1.32+dfsg' dh_install find debian -type d -name __pycache__ | xargs rm -rf find debian -type d -name tests | xargs rm -rf find debian -type f -name .adapters -delete make[1]: Leaving directory '/build/reproducible-path/atropos-1.1.32+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'atropos' in '../atropos_1.1.32+dfsg-2_i386.deb'. dpkg-deb: building package 'atropos-dbgsym' in '../atropos-dbgsym_1.1.32+dfsg-2_i386.deb'. dpkg-genbuildinfo --build=binary -O../atropos_1.1.32+dfsg-2_i386.buildinfo dpkg-genchanges --build=binary -O../atropos_1.1.32+dfsg-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/9326 and its subdirectories I: Current time: Fri Oct 25 08:00:13 -12 2024 I: pbuilder-time-stamp: 1729886413 Fri Oct 25 20:00:14 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Fri Oct 25 20:00:14 UTC 2024 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Fri Oct 25 20:04:58 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. Fri Oct 25 20:04:58 UTC 2024 I: atropos_1.1.32+dfsg-2_i386.changes: Format: 1.8 Date: Wed, 31 Jul 2024 10:59:45 +0200 Source: atropos Binary: atropos atropos-dbgsym Architecture: i386 Version: 1.1.32+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: atropos - NGS read trimming tool that is specific, sensitive, and speedy Changes: atropos (1.1.32+dfsg-2) unstable; urgency=medium . * Team upload. * Switch back to Cython3, it works. Checksums-Sha1: ccc157d558af5108138a56a67682aefae9f03627 646228 atropos-dbgsym_1.1.32+dfsg-2_i386.deb 6113f39beb370084793f33f3ec4011e398c77daf 7449 atropos_1.1.32+dfsg-2_i386.buildinfo bcb453379eb1c69bc34f09548b2847bc907fb9ad 223096 atropos_1.1.32+dfsg-2_i386.deb Checksums-Sha256: 377f069bc2644bb9706856659f742506beec8268bebe5ae1ed2c036c603ece23 646228 atropos-dbgsym_1.1.32+dfsg-2_i386.deb 1ae755ad3698745350d46d88232e3a773673e1809caafb969ac1b410a7184453 7449 atropos_1.1.32+dfsg-2_i386.buildinfo a06bafaa6d420c239add537d524411a8f9097c5552969e3055a1fdbd7c362cf3 223096 atropos_1.1.32+dfsg-2_i386.deb Files: 0597eb218dd7a08e83288a159c76b67b 646228 debug optional atropos-dbgsym_1.1.32+dfsg-2_i386.deb bbc6c39f6e1e55b6853c3b56406081db 7449 science optional atropos_1.1.32+dfsg-2_i386.buildinfo edd0db3d320ba7b34f711f5928e24476 223096 science optional atropos_1.1.32+dfsg-2_i386.deb Fri Oct 25 20:04:59 UTC 2024 I: diffoscope 281 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_7-44392.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.DqOyLqwn/atropos_1.1.32+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.DqOyLqwn/atropos_1.1.32+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.DqOyLqwn/atropos_1.1.32+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.DqOyLqwn/b1/atropos_1.1.32+dfsg-2_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.DqOyLqwn/b2/atropos_1.1.32+dfsg-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.447s) 0.447s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.031s) 0.031s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 835ms CPU time consumed: 832ms Fri Oct 25 20:05:01 UTC 2024 I: diffoscope 281 found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 25 20:05:01 UTC 2024 I: atropos from trixie built successfully and reproducibly on i386. Fri Oct 25 20:05:02 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Oct 25 20:05:02 UTC 2024 I: Submitting 12K b1/atropos_1.1.32+dfsg-2_i386.buildinfo.asc Fri Oct 25 20:05:03 UTC 2024 I: Submitting 12K b2/atropos_1.1.32+dfsg-2_i386.buildinfo.asc Fri Oct 25 20:05:03 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Oct 25 20:05:04 UTC 2024 I: Done submitting .buildinfo files. Fri Oct 25 20:05:04 UTC 2024 I: Removing signed atropos_1.1.32+dfsg-2_i386.buildinfo.asc files: removed './b1/atropos_1.1.32+dfsg-2_i386.buildinfo.asc' removed './b2/atropos_1.1.32+dfsg-2_i386.buildinfo.asc'