Wed Oct 30 12:00:14 UTC 2024 I: starting to build abyss/trixie/i386 on jenkins on '2024-10-30 11:59' Wed Oct 30 12:00:14 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_9/29889/console.log Wed Oct 30 12:00:14 UTC 2024 I: Downloading source for trixie/abyss=2.3.9-1 --2024-10-30 12:00:14-- http://deb.debian.org/debian/pool/main/a/abyss/abyss_2.3.9-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2302 (2.2K) [text/prs.lines.tag] Saving to: ‘abyss_2.3.9-1.dsc’ 0K .. 100% 332M=0s 2024-10-30 12:00:14 (332 MB/s) - ‘abyss_2.3.9-1.dsc’ saved [2302/2302] Wed Oct 30 12:00:14 UTC 2024 I: abyss_2.3.9-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: abyss Binary: abyss Architecture: any Version: 2.3.9-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Michael R. Crusoe , Étienne Mollier Homepage: https://github.com/bcgsc/abyss Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/abyss Vcs-Git: https://salsa.debian.org/med-team/abyss.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, libboost-graph-dev, libbtllib-dev, libopenmpi-dev, libsparsehash-dev, libtext-multimarkdown-perl , libsqlite3-dev, pkgconf, help2man, debhelper Package-List: abyss deb science optional arch=any Checksums-Sha1: ec95d82f7bc7999f88c57d305dc270f71c342951 933744 abyss_2.3.9.orig.tar.xz 4211075a885a16e74b0fad03ed3e1afb99ac8d70 1497856 abyss_2.3.9-1.debian.tar.xz Checksums-Sha256: 0e41d8e0fea5674cdf21f2b53af1ec173791879486233cd28b385413ded8712d 933744 abyss_2.3.9.orig.tar.xz ff67c73eb6e72086fcd232546c81a8e7845a122e02bf83f8e47722ff82ddc218 1497856 abyss_2.3.9-1.debian.tar.xz Files: 633324e0140f6dd7934fdb4ebbf13f1a 933744 abyss_2.3.9.orig.tar.xz e1b282601dd4dd11a7bf833b3148c508 1497856 abyss_2.3.9-1.debian.tar.xz Dgit: 7625d6c097b895ae2b180b6e0c453e8ca98b7568 debian archive/debian/2.3.9-1 https://git.dgit.debian.org/abyss -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmbjViIUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqYJxAAlnO4YS5b9GPByZ7fvy4W4TFoQgfz Bil1q+hp006TGT5NzA9OjXvRbOptKJKK88ZEVKVfhF68nFtAh5/x6gOXrNMFWT5V 9ycIFUC1p7bIUJOyuGuosXgleZj0cOD5PRVeQ3ZXfWy5r89oTqJ2DJadvDMe10j1 ikSD1ydZKXvsnBLETR2pVt2uCanh4XKwaxfOPpjMgKJSGfJrTyzuKNMf93uZQBIG f5zmrvQ6fLgWoP35zPYFgXzxmm4YWfwdOTPEl1WFUWG3qk85B9fdfH159QfINGZ3 PBGq+RxZygGjW62yXbPbBAlfkKYF9zbriAjMwYpMUjd1eTrN2UcyEA+TlP7scvMn e6dzPdf43I97rEy4cnfzXioKQwHX57nB37xndI0cz1raW+LNXYUicajgV0QpKEYL nYBsJ6q9rgD9N+h0nMktWhp0Nt1sXsgZXHVvk82zOzfxFfo2LJK45AmZLIGxa4Kt aw4RmMS2rQwHpYORwg0AEo8Y1UtCC7iyaLNkh0kY8o9DY6OeQFMoFmsLjYtrgrdr 5wwNy4AjSx/lN9X3hxMw8i4X1ALo6yEP92DJI6en3VKXXLWn62mFUeOpbaCrfGa8 9zb1oIRLutZHGsD+Vb4R/MKJeKRW/sB1SLqt9W8c+FcjDCokP5LO+Lwq4qMHFikt NXCUoSQwCZUHzYU= =rhZ8 -----END PGP SIGNATURE----- Wed Oct 30 12:00:14 UTC 2024 I: Checking whether the package is not for us Wed Oct 30 12:00:14 UTC 2024 I: Starting 1st build on remote node ionos2-i386.debian.net. Wed Oct 30 12:00:14 UTC 2024 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Wed Oct 30 12:00:57 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Oct 30 00:00:17 -12 2024 I: pbuilder-time-stamp: 1730289617 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [abyss_2.3.9-1.dsc] I: copying [./abyss_2.3.9.orig.tar.xz] I: copying [./abyss_2.3.9-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Sep 12 20:59:14 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./abyss_2.3.9-1.dsc: no acceptable signature found dpkg-source: info: extracting abyss in abyss-2.3.9 dpkg-source: info: unpacking abyss_2.3.9.orig.tar.xz dpkg-source: info: unpacking abyss_2.3.9-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying abyss-pe.patch dpkg-source: info: applying fix-privacy-breach.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/34312/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='533c821824084ef9b9b4a381366631ce' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='34312' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ymcD7KDU/pbuilderrc_A24o --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ymcD7KDU/b1 --logfile b1/build.log abyss_2.3.9-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos2-i386 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/34312/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, libboost-graph-dev, libbtllib-dev, libopenmpi-dev, libsparsehash-dev, libtext-multimarkdown-perl, libsqlite3-dev, pkgconf, help2man, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19936 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on libboost-graph-dev; however: Package libboost-graph-dev is not installed. pbuilder-satisfydepends-dummy depends on libbtllib-dev; however: Package libbtllib-dev is not installed. pbuilder-satisfydepends-dummy depends on libopenmpi-dev; however: Package libopenmpi-dev is not installed. pbuilder-satisfydepends-dummy depends on libsparsehash-dev; however: Package libsparsehash-dev is not installed. pbuilder-satisfydepends-dummy depends on libtext-multimarkdown-perl; however: Package libtext-multimarkdown-perl is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cpp-13{a} cpp-13-i686-linux-gnu{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gcc-13{a} gcc-13-base{a} gcc-13-i686-linux-gnu{a} gettext{a} gettext-base{a} gfortran-13{a} gfortran-13-i686-linux-gnu{a} groff-base{a} help2man{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-graph-dev{a} libboost-graph1.83-dev{a} libboost-graph1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-test1.83-dev{a} libboost-test1.83.0{a} libboost1.83-dev{a} libcbor0.10{a} libcom-err2{a} libdebhelper-perl{a} libedit2{a} libelf1t64{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libfabric1{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgcc-13-dev{a} libgfortran-13-dev{a} libgfortran5{a} libgssapi-krb5-2{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu72{a} libjs-jquery{a} libjs-jquery-ui{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblocale-gettext-perl{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3t64{a} libpciaccess0{a} libpipeline1{a} libpkgconf3{a} libpsm-infinipath1{a} librdmacm1t64{a} libsparsehash-dev{a} libsqlite3-dev{a} libtext-markdown-perl{a} libtext-multimarkdown-perl{a} libtool{a} libuchardet0{a} liburi-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} m4{a} man-db{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common krb5-locales libarchive-cpio-perl libcoarrays-openmpi-dev libhttp-message-perl libmail-sendmail-perl lynx wget xauth 0 packages upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 107 MB of archives. After unpacking 537 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: architecture-is-64-bit which is a virtual package and is not provided by any available package Depends: libbtllib-dev which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cpp-13{a} cpp-13-i686-linux-gnu{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gcc-13{a} gcc-13-base{a} gcc-13-i686-linux-gnu{a} gettext{a} gettext-base{a} gfortran-13{a} gfortran-13-i686-linux-gnu{a} groff-base{a} help2man{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-graph-dev{a} libboost-graph1.83-dev{a} libboost-graph1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-test1.83-dev{a} libboost-test1.83.0{a} libboost1.83-dev{a} libcbor0.10{a} libcom-err2{a} libdebhelper-perl{a} libedit2{a} libelf1t64{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libfabric1{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgcc-13-dev{a} libgfortran-13-dev{a} libgfortran5{a} libgssapi-krb5-2{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu72{a} libjs-jquery{a} libjs-jquery-ui{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblocale-gettext-perl{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3t64{a} libpciaccess0{a} libpipeline1{a} libpkgconf3{a} libpsm-infinipath1{a} librdmacm1t64{a} libsparsehash-dev{a} libsqlite3-dev{a} libtext-markdown-perl{a} libtext-multimarkdown-perl{a} libtool{a} libuchardet0{a} liburi-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} m4{a} man-db{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common krb5-locales libarchive-cpio-perl libcoarrays-openmpi-dev libhttp-message-perl libmail-sendmail-perl lynx wget xauth 0 packages upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 107 MB of archives. After unpacking 537 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/34312 and its subdirectories Wed Oct 30 12:00:58 UTC 2024 W: No second build log, what happened? Wed Oct 30 12:00:58 UTC 2024 W: Downloading the build dependencies failed Wed Oct 30 12:00:58 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Wed Oct 30 12:00:58 UTC 2024 W: Network problems are automatically rescheduled after some hours.