Fri May 24 06:09:09 UTC 2024 I: starting to build virulencefinder/trixie/armhf on jenkins on '2024-05-24 06:08' Fri May 24 06:09:09 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_16/6335/console.log Fri May 24 06:09:09 UTC 2024 I: Downloading source for trixie/virulencefinder=2.0.5-2 --2024-05-24 06:09:10-- http://deb.debian.org/debian/pool/main/v/virulencefinder/virulencefinder_2.0.5-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2395 (2.3K) [text/prs.lines.tag] Saving to: ‘virulencefinder_2.0.5-2.dsc’ 0K .. 100% 276M=0s 2024-05-24 06:09:10 (276 MB/s) - ‘virulencefinder_2.0.5-2.dsc’ saved [2395/2395] Fri May 24 06:09:10 UTC 2024 I: virulencefinder_2.0.5-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: virulencefinder Binary: virulencefinder, virulencefinder-examples Architecture: all Version: 2.0.5-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://bitbucket.org/genomicepidemiology/virulencefinder Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/virulencefinder Vcs-Git: https://salsa.debian.org/med-team/virulencefinder.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-tabulate, python3-cgecore, ncbi-blast+ Package-List: virulencefinder deb science optional arch=all virulencefinder-examples deb science optional arch=all Checksums-Sha1: bc65078a3362b49d9d8cc60845fffbd38fdd5a38 263880 virulencefinder_2.0.5.orig.tar.xz ec013f4e8d77e59079693eaeb9bda3422604a4be 6144 virulencefinder_2.0.5-2.debian.tar.xz Checksums-Sha256: 2936d46e9db0d239294463919b34ae8f57acf0784e82f136010a8654cf00529f 263880 virulencefinder_2.0.5.orig.tar.xz 64ab0a80d01bafaf831070f7678169880be6e405d08128880f2dd29974c7fbbd 6144 virulencefinder_2.0.5-2.debian.tar.xz Files: 641ff0055d0c9b7ad332254e16608999 263880 virulencefinder_2.0.5.orig.tar.xz ca07e5311107f325f2f688ecae36697a 6144 virulencefinder_2.0.5-2.debian.tar.xz Dgit: a3ba065aa7c12b2931475a4c33078c400d9f85ca debian archive/debian/2.0.5-2 https://git.dgit.debian.org/virulencefinder -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmZN0XAUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqDOBAAwO72XNQ8519J5o4uRBCyaHj6Kymx yjXEKYwh/fIo55EAyPiAJutEFI3mnF3Ol2v4WP27QEmDKUdZlxC8616fZReF9Wtq JUcH7ufrfOF2cbZocn+YGHRpo1y3z+vcLT4p0OiCpZZ9kglLJBB7TTEc27wohrCo 1mR1GUOdn5IR6+Rk4E3iJlMkRj7A0is99zgkYQ+O0q034Vb4llUFGKvtI+pjqzRj IeP2Zry5jSwi+9dU0jVRjrJzukmXkiDsuojNWJHlSZUmjLIfoBIQOnMj4ZNKj3Dc wZbhP/2OLNgqQhX8gdlUEKYTYButzZ66BwNTZmwUjejowFTl62HqRNXmk0JGrRlx iLuODiA/LLpBDRYF54w4lHVJjiggBZf5Gu2IWiJv7j8Gf20MoGVqHTEj4NC+bRtK ujWSXe2yaqu3Mmz7K7uretLFxw5jRODmz2VoTy8k/AHGhxNd5qN8SqlqHov18RHo OwxNUNZ0Z0oCDpfnpgzyZDoUtVoMEdHBlRUOX8u52cm8d18449mTQtfykGSpcfEw BFp0vuldECQJ+xLT29isA7VV1LbjcRq2ieoOZjt9llTBc3vE15qAP2MZQMFZhk7/ ipjy/33H+7gd/s98v3QbN+5gdWrcEeA/WrPzUsGyqpJcxK/w2r7HkWyIlRJxB09P DfqIqpb8tBnLNo8= =S6MV -----END PGP SIGNATURE----- Fri May 24 06:09:10 UTC 2024 I: Checking whether the package is not for us Fri May 24 06:09:10 UTC 2024 I: Starting 1st build on remote node virt32b-armhf-rb.debian.net. Fri May 24 06:09:10 UTC 2024 I: Preparing to do remote build '1' on virt32b-armhf-rb.debian.net. Fri May 24 06:15:53 UTC 2024 I: Deleting $TMPDIR on virt32b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu May 23 18:09:16 -12 2024 I: pbuilder-time-stamp: 1716530956 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [virulencefinder_2.0.5-2.dsc] I: copying [./virulencefinder_2.0.5.orig.tar.xz] I: copying [./virulencefinder_2.0.5-2.debian.tar.xz] I: Extracting source gpgv: Signature made Wed May 22 11:05:20 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./virulencefinder_2.0.5-2.dsc: no acceptable signature found dpkg-source: info: extracting virulencefinder in virulencefinder-2.0.5 dpkg-source: info: unpacking virulencefinder_2.0.5.orig.tar.xz dpkg-source: info: unpacking virulencefinder_2.0.5-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying reproducible_build.patch dpkg-source: info: applying python3.12.patch dpkg-source: info: applying adjust-reference-data.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/25979/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='79d591edd12d43029034b0100c41abe5' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='25979' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.64egmuen/pbuilderrc_tRTn --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.64egmuen/b1 --logfile b1/build.log virulencefinder_2.0.5-2.dsc' SUDO_GID='112' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32b 6.1.0-21-armmp-lpae #1 SMP Debian 6.1.90-1 (2024-05-03) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 23 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/25979/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-tabulate, python3-cgecore, ncbi-blast+ dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19446 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate; however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-cgecore; however: Package python3-cgecore is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libdata-optlist-perl{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} liblerc4{a} liblmdb0{a} libmagic-mgc{a} libmagic1t64{a} libmbedcrypto7t64{a} libmbedtls14t64{a} libmbedx509-1t64{a} libopenjp2-7{a} libparams-util-perl{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libsub-exporter-perl{a} libsub-install-perl{a} libsub-override-perl{a} libsub-prototype-perl{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} ncbi-blast+{a} ncbi-data{a} netbase{a} po-debconf{a} python3{a} python3-biopython{a} python3-cairo{a} python3-cgecore{a} python3-chardet{a} python3-distutils{a} python3-freetype{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-tabulate{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 116 newly installed, 0 to remove and 0 not upgraded. Need to get 72.6 MB of archives. After unpacking 249 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libpython3.11-minimal armhf 3.11.9-1 [805 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf python3.11-minimal armhf 3.11.9-1 [1600 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libreadline8t64 armhf 8.2-4 [145 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libpython3.11-stdlib armhf 3.11.9-1 [1704 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf python3.11 armhf 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf sgml-base all 1.31 [15.4 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-4 [1090 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.1-1 [85.8 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.1-1 [1375 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libparams-util-perl armhf 1.102-3 [23.0 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf libsub-install-perl all 0.929-1 [10.5 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf libsub-prototype-perl armhf 0.03-2+b2 [9460 B] Get: 39 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.11-1 [10.4 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 42 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b3 [598 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf python3-pkg-resources all 68.1.2-2 [241 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf python3-distutils all 3.12.3-1 [131 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf python3-setuptools all 68.1.2-2 [468 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf dh-python all 6.20240422 [107 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf libfontenc1 armhf 1:1.1.8-1 [20.6 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf libpng16-16t64 armhf 1.6.43-5 [262 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf libfreetype6 armhf 2.13.2+dfsg-1+b4 [372 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf x11-common all 1:7.7+23 [252 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf xfonts-utils armhf 1:7.7+6 [84.5 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 65 http://deb.debian.org/debian trixie/main armhf fontconfig-config armhf 2.15.0-1.1 [317 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf libblas3 armhf 3.12.0-3 [108 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf libbsd0 armhf 0.12.2-1 [127 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf libfontconfig1 armhf 2.15.0-1.1 [370 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf libpixman-1-0 armhf 0.42.2-1+b1 [476 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf libxau6 armhf 1:1.0.9-1+b1 [17.4 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf libxdmcp6 armhf 1:1.1.2-3+b1 [23.0 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf libxcb1 armhf 1.17.0-2 [140 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf libx11-data all 2:1.8.7-1 [328 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf libx11-6 armhf 2:1.8.7-1+b1 [739 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf libxcb-render0 armhf 1.17.0-2 [114 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf libxcb-shm0 armhf 1.17.0-2 [105 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf libxrender1 armhf 1:0.9.10-1.1+b1 [24.9 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf libcairo2 armhf 1.18.0-3+b1 [442 kB] Get: 80 http://deb.debian.org/debian trixie/main armhf libdeflate0 armhf 1.20-1 [35.9 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf libfribidi0 armhf 1.0.13-3+b1 [69.4 kB] Get: 82 http://deb.debian.org/debian trixie/main armhf libgfortran5 armhf 14-20240330-1 [264 kB] Get: 83 http://deb.debian.org/debian trixie/main armhf libglib2.0-0t64 armhf 2.80.2-1 [1314 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf libgraphite2-3 armhf 1.3.14-2 [63.2 kB] Get: 85 http://deb.debian.org/debian trixie/main armhf libharfbuzz0b armhf 8.3.0-2+b1 [2156 kB] Get: 86 http://deb.debian.org/debian trixie/main armhf libimagequant0 armhf 2.18.0-1+b1 [30.7 kB] Get: 87 http://deb.debian.org/debian trixie/main armhf libjbig0 armhf 2.1-6.1+b1 [27.3 kB] Get: 88 http://deb.debian.org/debian trixie/main armhf libjpeg62-turbo armhf 1:2.1.5-3 [143 kB] Get: 89 http://deb.debian.org/debian trixie/main armhf liblapack3 armhf 3.12.0-3 [1803 kB] Get: 90 http://deb.debian.org/debian trixie/main armhf liblcms2-2 armhf 2.14-2+b1 [126 kB] Get: 91 http://deb.debian.org/debian trixie/main armhf liblerc4 armhf 4.0.0+ds-4+b1 [137 kB] Get: 92 http://deb.debian.org/debian trixie/main armhf liblmdb0 armhf 0.9.31-1+b1 [37.6 kB] Get: 93 http://deb.debian.org/debian trixie/main armhf libmbedcrypto7t64 armhf 2.28.8-1 [251 kB] Get: 94 http://deb.debian.org/debian trixie/main armhf libmbedx509-1t64 armhf 2.28.8-1 [127 kB] Get: 95 http://deb.debian.org/debian trixie/main armhf libmbedtls14t64 armhf 2.28.8-1 [158 kB] Get: 96 http://deb.debian.org/debian trixie/main armhf libopenjp2-7 armhf 2.5.0-2+b3 [170 kB] Get: 97 http://deb.debian.org/debian trixie/main armhf libraqm0 armhf 0.10.1-1+b1 [11.8 kB] Get: 98 http://deb.debian.org/debian trixie/main armhf libsharpyuv0 armhf 1.4.0-0.1 [111 kB] Get: 99 http://deb.debian.org/debian trixie/main armhf libwebp7 armhf 1.4.0-0.1 [265 kB] Get: 100 http://deb.debian.org/debian trixie/main armhf libtiff6 armhf 4.5.1+git230720-4 [301 kB] Get: 101 http://deb.debian.org/debian trixie/main armhf libwebpdemux2 armhf 1.4.0-0.1 [110 kB] Get: 102 http://deb.debian.org/debian trixie/main armhf libwebpmux3 armhf 1.4.0-0.1 [120 kB] Get: 103 http://deb.debian.org/debian trixie/main armhf ncbi-data all 6.1.20170106+dfsg2-2 [3544 kB] Get: 104 http://deb.debian.org/debian trixie/main armhf ncbi-blast+ armhf 2.12.0+ds-4+b1 [10.9 MB] Get: 105 http://deb.debian.org/debian trixie/main armhf python3-numpy armhf 1:1.26.4+ds-10 [4132 kB] Get: 106 http://deb.debian.org/debian trixie/main armhf python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 107 http://deb.debian.org/debian trixie/main armhf python3-pil armhf 10.3.0-2 [521 kB] Get: 108 http://deb.debian.org/debian trixie/main armhf python3-cairo armhf 1.26.0-1 [130 kB] Get: 109 http://deb.debian.org/debian trixie/main armhf python3-freetype all 2.4.0-1 [80.3 kB] Get: 110 http://deb.debian.org/debian trixie/main armhf python3-rlpycairo all 0.3.0-3 [9904 B] Get: 111 http://deb.debian.org/debian trixie/main armhf python3-reportlab all 4.2.0-2 [1149 kB] Get: 112 http://deb.debian.org/debian trixie/main armhf xml-core all 0.19 [20.1 kB] Get: 113 http://deb.debian.org/debian trixie/main armhf w3c-sgml-lib all 1.3-3 [273 kB] Get: 114 http://deb.debian.org/debian trixie/main armhf python3-biopython armhf 1.83+dfsg1-2 [1601 kB] Get: 115 http://deb.debian.org/debian trixie/main armhf python3-cgecore all 1.5.6+ds-1 [28.7 kB] Get: 116 http://deb.debian.org/debian trixie/main armhf python3-tabulate all 0.8.10-1 [38.8 kB] Fetched 72.6 MB in 3s (25.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. 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Preparing to unpack .../python3.11-minimal_3.11.9-1_armhf.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:armhf (3.11.9-1) ... Setting up libexpat1:armhf (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19762 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_armhf.deb ... 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Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:armhf. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_armhf.deb ... Unpacking libpython3.11-stdlib:armhf (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_armhf.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20754 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_armhf.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.45-3_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../004-libmagic1t64_1%3a5.45-3_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../005-file_1%3a5.45-3_armhf.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../006-gettext-base_0.21-14+b1_armhf.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:armhf. 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Setting up python3-numpy (1:1.26.4+ds-10) ... Setting up python3-reportlab (4.2.0-2) ... Setting up dh-python (6.20240422) ... Processing triggers for libc-bin (2.38-11) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.83+dfsg1-2) ... Setting up python3-cgecore (1.5.6+ds-1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/virulencefinder-2.0.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../virulencefinder_2.0.5-2_source.changes dpkg-buildpackage: info: source package virulencefinder dpkg-buildpackage: info: source version 2.0.5-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: rm -rf test/Hit_in_genome_seq.fsa test/Virulence_genes.fsa test/data.json test/tmp test/results_tab.tsv test/results.txt dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild W: pybuild base:341: missing command (plugin=custom, method=configure, interpreter=python3.11, version=3.11) dh_auto_build -O--buildsystem=pybuild W: pybuild base:341: missing command (plugin=custom, method=build, interpreter=python3.11, version=3.11) debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/virulencefinder-2.0.5' ./virulencefinder.py -i test/test.fsa -o test/ -p test/database/ -mp blastn -x -q ; \ file=test/results_tab.tsv ; \ DIFF=$(diff "$file" test/test_results.tsv) ; \ if [ "$DIFF" = "" ] && [ -s "$file" ] ; then \ echo "TEST SUCCEEDED" ; \ else \ echo "TEST FAILED"; \ fi TEST SUCCEEDED make[1]: Leaving directory '/build/reproducible-path/virulencefinder-2.0.5' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild W: pybuild base:341: missing command (plugin=custom, method=install, interpreter=python3.11, version=3.11) dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/virulencefinder-2.0.5' dh_installman --language=C make[1]: Leaving directory '/build/reproducible-path/virulencefinder-2.0.5' dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:113: replacing shebang in debian/virulencefinder/usr/share/virulencefinder/virulencefinder.py dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'virulencefinder-examples' in '../virulencefinder-examples_2.0.5-2_all.deb'. dpkg-deb: building package 'virulencefinder' in '../virulencefinder_2.0.5-2_all.deb'. dpkg-genbuildinfo --build=binary -O../virulencefinder_2.0.5-2_armhf.buildinfo dpkg-genchanges --build=binary -O../virulencefinder_2.0.5-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/25979 and its subdirectories I: Current time: Thu May 23 18:15:39 -12 2024 I: pbuilder-time-stamp: 1716531339 Fri May 24 06:15:55 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64z-armhf-rb.debian.net. Fri May 24 06:15:55 UTC 2024 I: Preparing to do remote build '2' on virt64z-armhf-rb.debian.net. Fri May 24 06:22:30 UTC 2024 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net. Fri May 24 06:22:33 UTC 2024 I: virulencefinder_2.0.5-2_armhf.changes: Format: 1.8 Date: Wed, 22 May 2024 13:00:29 +0200 Source: virulencefinder Binary: virulencefinder virulencefinder-examples Architecture: all Version: 2.0.5-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: virulencefinder - identify virulence genes in total or partial sequenced isolates o virulencefinder-examples - example data for virulencefinder Closes: 1066004 Changes: virulencefinder (2.0.5-2) unstable; urgency=medium . * d/control: remove stray dependency on python3-distutils. (Closes: #1066004) * d/control: declare compliance to standards version 4.7.0. Checksums-Sha1: 41177e0dba67cef6cd0c21f717bd6dd750109c94 372580 virulencefinder-examples_2.0.5-2_all.deb c8cd86b9051f955dcdb7814dceb2d55c3a209009 13472 virulencefinder_2.0.5-2_all.deb 41e6174941c915d4c94e215198eda32e8886d534 7666 virulencefinder_2.0.5-2_armhf.buildinfo Checksums-Sha256: 4b3e9167b652889a2a3df313c902f1adad07937e17d1e2dc25abb00a8afed342 372580 virulencefinder-examples_2.0.5-2_all.deb 1a19f507fabec8b19b3e6678938e78da3358805f0ed0c28b6f6d36e7f29fe75e 13472 virulencefinder_2.0.5-2_all.deb e8b25c3a42dbf81fc336bc838bb58833599bdd67be226c40768b9fc68be2800d 7666 virulencefinder_2.0.5-2_armhf.buildinfo Files: 418d1af146526b1664b99c9c5d917ebb 372580 science optional virulencefinder-examples_2.0.5-2_all.deb 0b48bd4d070c0e41227e2f44b79da7bd 13472 science optional virulencefinder_2.0.5-2_all.deb f8eed94433f6c90fdd3a5e4d9ced49cf 7666 science optional virulencefinder_2.0.5-2_armhf.buildinfo Fri May 24 06:22:34 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_16-6335.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.64egmuen/virulencefinder_2.0.5-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.64egmuen/virulencefinder_2.0.5-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.64egmuen/virulencefinder_2.0.5-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.64egmuen/b1/virulencefinder_2.0.5-2_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.64egmuen/b2/virulencefinder_2.0.5-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.374s) 0.374s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.022s) 0.022s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 772ms CPU time consumed: 773ms Fri May 24 06:22:35 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Fri May 24 06:22:35 UTC 2024 I: virulencefinder from trixie built successfully and reproducibly on armhf. Fri May 24 06:22:36 UTC 2024 I: Submitting .buildinfo files to external archives: Fri May 24 06:22:36 UTC 2024 I: Submitting 12K b1/virulencefinder_2.0.5-2_armhf.buildinfo.asc Fri May 24 06:22:37 UTC 2024 I: Submitting 12K b2/virulencefinder_2.0.5-2_armhf.buildinfo.asc Fri May 24 06:22:38 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri May 24 06:22:38 UTC 2024 I: Done submitting .buildinfo files. Fri May 24 06:22:38 UTC 2024 I: Removing signed virulencefinder_2.0.5-2_armhf.buildinfo.asc files: removed './b1/virulencefinder_2.0.5-2_armhf.buildinfo.asc' removed './b2/virulencefinder_2.0.5-2_armhf.buildinfo.asc'