Sun Apr 7 06:40:42 UTC 2024 I: starting to build trinculo/trixie/armhf on jenkins on '2024-04-07 06:40' Sun Apr 7 06:40:42 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_25/3514/console.log Sun Apr 7 06:40:42 UTC 2024 I: Downloading source for trixie/trinculo=0.96+dfsg-4 --2024-04-07 06:40:42-- http://deb.debian.org/debian/pool/main/t/trinculo/trinculo_0.96%2bdfsg-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2076 (2.0K) [text/prs.lines.tag] Saving to: ‘trinculo_0.96+dfsg-4.dsc’ 0K .. 100% 262M=0s 2024-04-07 06:40:42 (262 MB/s) - ‘trinculo_0.96+dfsg-4.dsc’ saved [2076/2076] Sun Apr 7 06:40:42 UTC 2024 I: trinculo_0.96+dfsg-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: trinculo Binary: trinculo Architecture: any Version: 0.96+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Nilesh Patra Homepage: https://sourceforge.net/projects/trinculo/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/trinculo Vcs-Git: https://salsa.debian.org/med-team/trinculo.git Testsuite: autopkgtest Testsuite-Triggers: python3-all Build-Depends: debhelper-compat (= 13), liblapack-dev Package-List: trinculo deb science optional arch=any Checksums-Sha1: ca26c603112c2607f800805e3596b03c020aaae7 61360 trinculo_0.96+dfsg.orig.tar.xz 41f0a6d865672204d3dc5fb82f891f86d4051bcd 13452 trinculo_0.96+dfsg-4.debian.tar.xz Checksums-Sha256: 51b73c31fe0ae52d96ea3f92ad4af7e9e35dba634200ad43428dc349b9b5767d 61360 trinculo_0.96+dfsg.orig.tar.xz d816557359930cc17c7961a5768a5c8ac4f5c1e2d1dc46da34fb25406666ad9a 13452 trinculo_0.96+dfsg-4.debian.tar.xz Files: 73fc14eef2714899d42f9ffb2608ddfe 61360 trinculo_0.96+dfsg.orig.tar.xz 07f92fb9e7e517661b4a58e26c195f47 13452 trinculo_0.96+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmF+7CISHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nxmdoQAJDcPJVSbNfZvw8ZmUcAFBJIWqAhW6XQ iMIB5dzyLYAlvwW4kFn0i0JqPhMh2jXof/qmhJ5ye34/jOZVf/vGKv676oJtE/D3 ZeWoBx9XdOz/5U+y7C/xBJe8LrVUMzCqFIHR+MK3ebEKg2HbkECg000lcStTR5Db eTsO4NPljgPuAHT6cGaFCndyoxyMdq7nRCrnoLudQQcXWI6zJqlhdqrelWMNJjwl 2DtY+AnAktdKnomZw0SB88WFMSZGuhH+c5iI7b5odDxWnTYz8x7AGEkffX6zMSch 3lfpASK1zyxFnLr0Oe4vnrfoqdb+psAfYAzWDUsIwS4dRt8LdLxMymlEVFc1SHT5 sWlzXzH7kRwSy+qFDBOSTgYCtfhfkvKZzjF0M8++yDfT8f+Z0B+sxyTQ0ch6DEGm Y2aoTaV24SzXhsMfLZm7En7YQwX9nJndjXHnhLPlVfrrXuz3QdANV92/rFa1P5Py s8CQZ/Hxq4qz2QYxBhEHB8HAKDd+RDUCMOEI+c2+uX6ovEMop+TFsMtnfDOBzMYy 99aBxbUZp9umwgvXZzFQeifS6MhRfCINu6buL21FlEEpiAaAPpdcdK63y1PEVBlx p50gT2ezWrH6+EPEK163nBdunaCXijDYtX1pDn8Uml0PQONpy1jJl3aa9C7eauPy MWmcdxyxd6Z3 =hpzC -----END PGP SIGNATURE----- Sun Apr 7 06:40:42 UTC 2024 I: Checking whether the package is not for us Sun Apr 7 06:40:42 UTC 2024 I: Starting 1st build on remote node virt32c-armhf-rb.debian.net. Sun Apr 7 06:40:42 UTC 2024 I: Preparing to do remote build '1' on virt32c-armhf-rb.debian.net. Sun Apr 7 06:42:19 UTC 2024 I: Deleting $TMPDIR on virt32c-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Apr 6 18:40:48 -12 2024 I: pbuilder-time-stamp: 1712472048 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [trinculo_0.96+dfsg-4.dsc] I: copying [./trinculo_0.96+dfsg.orig.tar.xz] I: copying [./trinculo_0.96+dfsg-4.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Oct 31 19:18:58 2021 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./trinculo_0.96+dfsg-4.dsc: no acceptable signature found dpkg-source: info: extracting trinculo in trinculo-0.96+dfsg dpkg-source: info: unpacking trinculo_0.96+dfsg.orig.tar.xz dpkg-source: info: unpacking trinculo_0.96+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch dpkg-source: info: applying gcc11.patch dpkg-source: info: applying fix-interpreter.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/22574/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='9a40192dc5a04f83918246296376a396' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='22574' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gBqbmXXM/pbuilderrc_Oxp2 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gBqbmXXM/b1 --logfile b1/build.log trinculo_0.96+dfsg-4.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32c 6.1.0-18-armmp-lpae #1 SMP Debian 6.1.76-1 (2024-02-01) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 6 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/22574/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), liblapack-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19637 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on liblapack-dev; however: Package liblapack-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu72{a} liblapack-dev{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 22.5 MB of archives. After unpacking 88.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-2+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic1 armhf 1:5.45-2+b1 [97.9 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-2+b1 [42.2 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-3 [1088 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.39.3-6 [81.2 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.0-3 [1367 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main armhf libelf1 armhf 0.190-1+b1 [171 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1 [101 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b2 [599 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libblas3 armhf 3.12.0-3 [108 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libblas-dev armhf 3.12.0-3 [119 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libgfortran5 armhf 14-20240201-3 [263 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf liblapack3 armhf 3.12.0-3 [1803 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf liblapack-dev armhf 3.12.0-3 [1903 kB] Fetched 22.5 MB in 1s (34.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19637 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../02-libmagic1_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic1:armhf (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-2+b1_armhf.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_armhf.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-3_armhf.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.39.3-6_armhf.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.0-3_armhf.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../22-libelf1_0.190-1+b1_armhf.deb ... Unpacking libelf1:armhf (0.190-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../24-libicu72_72.1-4+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-4+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_armhf.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../30-libblas3_3.12.0-3_armhf.deb ... Unpacking libblas3:armhf (3.12.0-3) ... Selecting previously unselected package libblas-dev:armhf. Preparing to unpack .../31-libblas-dev_3.12.0-3_armhf.deb ... Unpacking libblas-dev:armhf (3.12.0-3) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../32-libgfortran5_14-20240201-3_armhf.deb ... Unpacking libgfortran5:armhf (14-20240201-3) ... Selecting previously unselected package liblapack3:armhf. Preparing to unpack .../33-liblapack3_3.12.0-3_armhf.deb ... Unpacking liblapack3:armhf (3.12.0-3) ... Selecting previously unselected package liblapack-dev:armhf. Preparing to unpack .../34-liblapack-dev_3.12.0-3_armhf.deb ... Unpacking liblapack-dev:armhf (3.12.0-3) ... Setting up libpipeline1:armhf (1.5.7-2) ... Setting up libicu72:armhf (72.1-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1:armhf (1:5.45-2+b1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up autopoint (0.21-14) ... Setting up libgfortran5:armhf (14-20240201-3) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libelf1:armhf (0.190-1+b1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Setting up libblas-dev:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblapack3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up liblapack-dev:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.37-15) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/trinculo-0.96+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../trinculo_0.96+dfsg-4_source.changes dpkg-buildpackage: info: source package trinculo dpkg-buildpackage: info: source version 0.96+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/trinculo-0.96+dfsg' arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/trinculo-0.96+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DLINUX -Isrc -o bin/trinculo src/trinculo.cpp -llapack -lpthread -Wl,-z,relro -Wl,-z,now In file included from /usr/include/c++/13/vector:72, from src/trinculo.cpp:22: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void EstCovMat::AddLocus(double*, double*)' at src/EstCovMat.h:40:41: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void EstCovMat::AddLocus(double*, double*)' at src/EstCovMat.h:41:42: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void dosagefile::readDosage(std::string)' at src/readDosage.h:85:21: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void bedfile::readBed(std::string)' at src/readBed.h:173:23: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void covars::readCovar(std::string, std::map, int>, int, int)' at src/readCovar.h:65:25: /usr/include/c++/13/bits/stl_vector.h:1034:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1034 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/reproducible-path/trinculo-0.96+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/trinculo/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'trinculo-dbgsym' in '../trinculo-dbgsym_0.96+dfsg-4_armhf.deb'. dpkg-deb: building package 'trinculo' in '../trinculo_0.96+dfsg-4_armhf.deb'. dpkg-genbuildinfo --build=binary -O../trinculo_0.96+dfsg-4_armhf.buildinfo dpkg-genchanges --build=binary -O../trinculo_0.96+dfsg-4_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/22574 and its subdirectories I: Current time: Sat Apr 6 18:42:10 -12 2024 I: pbuilder-time-stamp: 1712472130 Sun Apr 7 06:42:21 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64z-armhf-rb.debian.net. Sun Apr 7 06:42:21 UTC 2024 I: Preparing to do remote build '2' on virt64z-armhf-rb.debian.net. Sun Apr 7 06:43:45 UTC 2024 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net. Sun Apr 7 06:43:47 UTC 2024 I: trinculo_0.96+dfsg-4_armhf.changes: Format: 1.8 Date: Mon, 01 Nov 2021 00:43:03 +0530 Source: trinculo Binary: trinculo trinculo-dbgsym Architecture: armhf Version: 0.96+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: trinculo - toolkit to carry out genetic association for multi-category pheno Closes: 997266 Changes: trinculo (0.96+dfsg-4) unstable; urgency=medium . * Add patch to fix FTBFS with gcc-11 (Closes: #997266) * Add myself as an uploader instead + Thanks Pranav, for your work so far * Bump debhelper compatibility level to 13 * Bump Standards-Version to 4.6.0 (no changes needed) * Port python2 scripts to python3 fix interpreter, fix bugs in them * Install trinculo in /usr/bin, not in /bin * Run testing.py file (vendored by upstream) as autopkgtest as well Checksums-Sha1: e7a963906da861f4bc3f9735a5895aea40b1608e 487388 trinculo-dbgsym_0.96+dfsg-4_armhf.deb 4b617c920fb15c51c421f83912b098797af4bc7a 5459 trinculo_0.96+dfsg-4_armhf.buildinfo 9535a92425a0ea9287627999f98197c0424820d2 82336 trinculo_0.96+dfsg-4_armhf.deb Checksums-Sha256: 7469bfab42d506f367b0c7cbd35b52943ff744303c99e074341a2ef76b0b1167 487388 trinculo-dbgsym_0.96+dfsg-4_armhf.deb ae803663aa55c1c321fe3e3ebde69a03b5420403defb8b065ecf70bbbefc88a0 5459 trinculo_0.96+dfsg-4_armhf.buildinfo ba20ecb586133fee905099695473357f1cf45e1e2b3ef55b82fdb112f8a12942 82336 trinculo_0.96+dfsg-4_armhf.deb Files: 8b97df357e18d71fc06635806e861212 487388 debug optional trinculo-dbgsym_0.96+dfsg-4_armhf.deb 60a123f086f0ef42f6bba17ec99f8679 5459 science optional trinculo_0.96+dfsg-4_armhf.buildinfo a98b9a7e02a2cae12d1442e78de255c2 82336 science optional trinculo_0.96+dfsg-4_armhf.deb Sun Apr 7 06:43:48 UTC 2024 I: diffoscope 263 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_25-3514.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.gBqbmXXM/trinculo_0.96+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.gBqbmXXM/trinculo_0.96+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.gBqbmXXM/trinculo_0.96+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.gBqbmXXM/b1/trinculo_0.96+dfsg-4_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.gBqbmXXM/b2/trinculo_0.96+dfsg-4_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.365s) 0.365s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.023s) 0.023s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 689ms CPU time consumed: 687ms Sun Apr 7 06:43:49 UTC 2024 I: diffoscope 263 found no differences in the changes files, and a .buildinfo file also exists. Sun Apr 7 06:43:49 UTC 2024 I: trinculo from trixie built successfully and reproducibly on armhf. Sun Apr 7 06:43:50 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Apr 7 06:43:50 UTC 2024 I: Submitting 8.0K b1/trinculo_0.96+dfsg-4_armhf.buildinfo.asc Sun Apr 7 06:43:51 UTC 2024 I: Submitting 8.0K b2/trinculo_0.96+dfsg-4_armhf.buildinfo.asc Sun Apr 7 06:43:52 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Apr 7 06:43:52 UTC 2024 I: Done submitting .buildinfo files. Sun Apr 7 06:43:52 UTC 2024 I: Removing signed trinculo_0.96+dfsg-4_armhf.buildinfo.asc files: removed './b1/trinculo_0.96+dfsg-4_armhf.buildinfo.asc' removed './b2/trinculo_0.96+dfsg-4_armhf.buildinfo.asc'