Sun May 12 02:52:02 UTC 2024 I: starting to build toppic/trixie/armhf on jenkins on '2024-05-12 02:51' Sun May 12 02:52:02 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_1/3385/console.log Sun May 12 02:52:02 UTC 2024 I: Downloading source for trixie/toppic=1.5.3+dfsg1-1 --2024-05-12 02:52:02-- http://deb.debian.org/debian/pool/main/t/toppic/toppic_1.5.3%2bdfsg1-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2461 (2.4K) [text/prs.lines.tag] Saving to: ‘toppic_1.5.3+dfsg1-1.dsc’ 0K .. 100% 294M=0s 2024-05-12 02:52:02 (294 MB/s) - ‘toppic_1.5.3+dfsg1-1.dsc’ saved [2461/2461] Sun May 12 02:52:03 UTC 2024 I: toppic_1.5.3+dfsg1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: toppic Binary: toppic, toppic-common Architecture: any all Version: 1.5.3+dfsg1-1 Maintainer: The Debichem Group Uploaders: Filippo Rusconi Homepage: http://proteomics.informatics.iupui.edu/software/toppic/index.html Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/debichem-team/toppic Vcs-Git: https://salsa.debian.org/debichem-team/toppic.git Build-Depends: debhelper-compat (= 13), cmake, pkg-config, libhts-dev, libboost-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-thread-dev, libboost-system-dev, libboost-iostreams-dev, libboost-chrono-dev, libeigen3-dev, libxerces-c-dev, qtbase5-dev, libpwizlite-dev, nlohmann-json3-dev, zlib1g-dev, python3-docutils, libjs-filesaver, fonts-font-awesome, fonts-freefont-ttf, libjs-bootstrap4, libjs-popper.js, libjs-jquery-ui, node-jquery Package-List: toppic deb science optional arch=any toppic-common deb science optional arch=all Checksums-Sha1: 0308e54adcd49c048ce1d88530a9d4c386582708 27017512 toppic_1.5.3+dfsg1.orig.tar.gz 9633089f87294800c4b7edbd1403939d9c68e0b7 136308 toppic_1.5.3+dfsg1-1.debian.tar.xz Checksums-Sha256: 74e305fc0ee99c6b268b042587adaca1f775c4e7c87249692dbee3e44c564ae7 27017512 toppic_1.5.3+dfsg1.orig.tar.gz 428184b36184f9203a267b380d2b65ca73f942f8aaca10135f6bc387b2dfcaf9 136308 toppic_1.5.3+dfsg1-1.debian.tar.xz Files: 0f1e142722fc75a2d52deed09297da51 27017512 toppic_1.5.3+dfsg1.orig.tar.gz 6209f6ac0c7d59008a28aed31d2c00a9 136308 toppic_1.5.3+dfsg1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEsFMwThfW1Bndm0ZRQatITXaUz0IFAmNe/+YACgkQQatITXaU z0IsxQ/+NpEw0rbSlseEk6JAHc2MYz8LQLOLpZvCuf6tZB0Bh8xB5uWtsiW73DrH lpdCvLM6Q5cRzX/5nCKDa9F2fYrLEany9RBsWv2qa7brTu9JqIxiKb5XzuTmVo2x Ga4p5YCpCB2YbUomK5FeBXlsC7Y6ak7ljMBBxM0xSPtD5wTloxu1xrCHK9KStl9J u8q+ZznLbmvYeGoqRIuuXADC3JP6+wXJblHmqD9aaaVLp7FQj18zBXLZBPfs9pgA rDb8lkzkVXMBpBI8RAER/aFcuLeSP0bOmE7bRAOO4XSYN6TtW4DbzwpmkIVHBcJL xvJaVxhL/FPM9iRfr+4HE41jVmfnUdTkguH6dOhsNCfW1ejRqDkC7SrfpyAC8uJV 0czzV1a86tntOSxOLl9S8alLXbgjcJh4c42g4vaBFWsRFmfHlTKhSDXFQn9sJIRf DI/tSFk1Z7d3JHKH4FeaW0jYnTa16/Tx3gwfYl1TbtgWnZNHD+OX5cog9S0qOUS4 f5WxlALf8+tSqU6BzyP55+ftW3BcbR2IOVgSWJsdTIJGulfnteo1qGPp/K8r8eTH If8TdOZ+nUd6co5NM0NiIJ8+hzTCW/LIv7wDS6usq6dIl+G8Zn9iJtA4l6zyfN4/ WZ4DDxqq5c6W0ncjPEZ0eCEs4IFte12NITxIKmh8Sr+z4CkHhcQ= =hpRl -----END PGP SIGNATURE----- Sun May 12 02:52:03 UTC 2024 I: Checking whether the package is not for us Sun May 12 02:52:03 UTC 2024 I: Starting 1st build on remote node cbxi4a-armhf-rb.debian.net. Sun May 12 02:52:03 UTC 2024 I: Preparing to do remote build '1' on cbxi4a-armhf-rb.debian.net. Sun May 12 10:43:22 UTC 2024 I: Deleting $TMPDIR on cbxi4a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat May 11 14:52:20 -12 2024 I: pbuilder-time-stamp: 1715482340 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [toppic_1.5.3+dfsg1-1.dsc] I: copying [./toppic_1.5.3+dfsg1.orig.tar.gz] I: copying [./toppic_1.5.3+dfsg1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Oct 30 22:51:18 2022 gpgv: using RSA key B053304E17D6D419DD9B465141AB484D7694CF42 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./toppic_1.5.3+dfsg1-1.dsc: no acceptable signature found dpkg-source: info: extracting toppic in toppic-1.5.3+dfsg1 dpkg-source: info: unpacking toppic_1.5.3+dfsg1.orig.tar.gz dpkg-source: info: unpacking toppic_1.5.3+dfsg1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Use-the-CMake-build-system-to-configure-the-DATADIR.patch dpkg-source: info: applying 0002-Fix-the-erroneous-bin-install-directory.patch dpkg-source: info: applying 0003-Ensure-the-GUI-variants-are-installed-and-shipped.patch dpkg-source: info: applying 0004-Patch-to-use-libpwizlite-and-libhts-from-the-system.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/28870/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='dd29371c91564d1fb768257bf57a9f8e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='28870' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.eSlkQwVI/pbuilderrc_5Tb9 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.eSlkQwVI/b1 --logfile b1/build.log toppic_1.5.3+dfsg1-1.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux cbxi4a 6.1.0-21-armmp #1 SMP Debian 6.1.90-1 (2024-05-03) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 9 11:27 /bin -> usr/bin I: user script /srv/workspace/pbuilder/28870/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, pkg-config, libhts-dev, libboost-dev, libboost-filesystem-dev, libboost-program-options-dev, libboost-thread-dev, libboost-system-dev, libboost-iostreams-dev, libboost-chrono-dev, libeigen3-dev, libxerces-c-dev, qtbase5-dev, libpwizlite-dev, nlohmann-json3-dev, zlib1g-dev, python3-docutils, libjs-filesaver, fonts-font-awesome, fonts-freefont-ttf, libjs-bootstrap4, libjs-popper.js, libjs-jquery-ui, node-jquery dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19446 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-chrono-dev; however: Package libboost-chrono-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on libxerces-c-dev; however: Package libxerces-c-dev is not installed. pbuilder-satisfydepends-dummy depends on qtbase5-dev; however: Package qtbase5-dev is not installed. pbuilder-satisfydepends-dummy depends on libpwizlite-dev; however: Package libpwizlite-dev is not installed. pbuilder-satisfydepends-dummy depends on nlohmann-json3-dev; however: Package nlohmann-json3-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-docutils; however: Package python3-docutils is not installed. pbuilder-satisfydepends-dummy depends on libjs-filesaver; however: Package libjs-filesaver is not installed. pbuilder-satisfydepends-dummy depends on fonts-font-awesome; however: Package fonts-font-awesome is not installed. pbuilder-satisfydepends-dummy depends on fonts-freefont-ttf; however: Package fonts-freefont-ttf is not installed. pbuilder-satisfydepends-dummy depends on libjs-bootstrap4; however: Package libjs-bootstrap4 is not installed. pbuilder-satisfydepends-dummy depends on libjs-popper.js; however: Package libjs-popper.js is not installed. pbuilder-satisfydepends-dummy depends on libjs-jquery-ui; however: Package libjs-jquery-ui is not installed. pbuilder-satisfydepends-dummy depends on node-jquery; however: Package node-jquery is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-freefont-ttf{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} javascript-common{a} libarchive-zip-perl{a} libarchive13t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libbsd0{a} libcom-err2{a} libcups2t64{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libeigen3-dev{a} libelf1t64{a} libevdev2{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgbm1{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libgles-dev{a} libgles1{a} libgles2{a} libglib2.0-0t64{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libice6{a} libicu-dev{a} libicu72{a} libinput-bin{a} libinput10{a} libjpeg62-turbo{a} libjs-bootstrap4{a} libjs-filesaver{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-popper.js{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libllvm17t64{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmd4c0{a} libmtdev1t64{a} libnghttp2-14{a} libpcre2-16-0{a} libpipeline1{a} libpkgconf3{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpthread-stubs0-dev{a} libpwizlite-dev{a} libpwizlite3t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqt5concurrent5t64{a} libqt5core5t64{a} libqt5dbus5t64{a} libqt5gui5t64{a} libqt5network5t64{a} libqt5printsupport5t64{a} libqt5sql5t64{a} libqt5test5t64{a} libqt5widgets5t64{a} libqt5xml5t64{a} libreadline8t64{a} librhash0{a} librtmp1{a} libsensors-config{a} libsensors5{a} libsm6{a} libssh2-1t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libvulkan-dev{a} libvulkan1{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxerces-c-dev{a} libxerces-c3.2t64{a} libxext-dev{a} libxext6{a} libxfixes3{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxrender1{a} libxshmfence1{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} netbase{a} nlohmann-json3-dev{a} node-jquery{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python3{a} python3-docutils{a} python3-minimal{a} python3-roman{a} python3.11{a} python3.11-minimal{a} qt5-qmake{a} qt5-qmake-bin{a} qtbase5-dev{a} qtbase5-dev-tools{a} qtchooser{a} readline-common{a} sensible-utils{a} sgml-base{a} shared-mime-info{a} tzdata{a} x11-common{a} x11proto-dev{a} xkb-data{a} xml-core{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dbus krb5-locales libarchive-cpio-perl libglib2.0-data libjs-sizzle libltdl-dev libmail-sendmail-perl libpaper-utils libqt5opengl5-dev libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libqt5svg5 lynx mesa-vulkan-drivers psmisc publicsuffix python3-pil python3-pygments qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 wget xdg-user-dirs 0 packages upgraded, 241 newly installed, 0 to remove and 0 not upgraded. Need to get 140 MB of archives. After unpacking 730 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libpython3.11-minimal armhf 3.11.9-1 [805 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf python3.11-minimal armhf 3.11.9-1 [1600 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libreadline8t64 armhf 8.2-4 [145 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libpython3.11-stdlib armhf 3.11.9-1 [1704 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf python3.11 armhf 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf sgml-base all 1.31 [15.4 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf libproc2-0 armhf 2:4.0.4-4 [55.7 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf procps armhf 2:4.0.4-4 [864 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-4 [1090 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40-8 [85.6 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.1-1 [1375 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b3 [598 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libarchive13t64 armhf 3.7.2-2 [304 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.20.1-6+b1 [30.6 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.1~rc2-1 [21.8 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.20.1-6+b1 [75.5 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 40 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.20.1-6+b1 [290 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.20.1-6+b1 [112 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.61.0-1+b1 [64.1 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [53.2 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.0-4.1+b2 [198 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libcurl4t64 armhf 8.7.1-5 [391 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf libjsoncpp25 armhf 1.9.5-6+b2 [69.9 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf librhash0 armhf 1.4.3-3+b1 [143 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf libuv1t64 armhf 1.48.0-1.1 [134 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf cmake-data all 3.29.2-2 [2167 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf cmake armhf 3.29.2-2 [5215 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 59 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf xml-core all 0.19 [20.1 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf docutils-common all 0.20.1+dfsg-3 [128 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf libpng16-16t64 armhf 1.6.43-5 [262 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf libfreetype6 armhf 2.13.2+dfsg-1+b4 [372 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf fonts-freefont-ttf all 20211204+svn4273-2 [5318 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf fontconfig-config armhf 2.15.0-1.1 [317 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf libfontconfig1 armhf 2.15.0-1.1 [370 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf fontconfig armhf 2.15.0-1.1 [461 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf icu-devtools armhf 72.1-4+b1 [185 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf javascript-common all 11+nmu1 [6260 B] Get: 78 http://deb.debian.org/debian trixie/main armhf libavahi-common-data armhf 0.8-13+b2 [112 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf libavahi-common3 armhf 0.8-13+b2 [40.2 kB] Get: 80 http://deb.debian.org/debian trixie/main armhf libdbus-1-3 armhf 1.14.10-4+b1 [181 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf libavahi-client3 armhf 0.8-13+b2 [43.4 kB] Get: 82 http://deb.debian.org/debian trixie/main armhf libboost1.83-dev armhf 1.83.0-2.1+b1 [10.6 MB] Get: 83 http://deb.debian.org/debian trixie/main armhf libboost-atomic1.83.0 armhf 1.83.0-2.1+b1 [233 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf libboost-atomic1.83-dev armhf 1.83.0-2.1+b1 [234 kB] Get: 85 http://deb.debian.org/debian trixie/main armhf libboost-chrono1.83.0t64 armhf 1.83.0-2.1+b1 [238 kB] Get: 86 http://deb.debian.org/debian trixie/main armhf libboost-chrono1.83-dev armhf 1.83.0-2.1+b1 [244 kB] Get: 87 http://deb.debian.org/debian trixie/main armhf libboost-chrono-dev armhf 1.83.0.2+b2 [4212 B] Get: 88 http://deb.debian.org/debian trixie/main armhf libboost-date-time1.83.0 armhf 1.83.0-2.1+b1 [230 kB] Get: 89 http://deb.debian.org/debian trixie/main armhf libboost-serialization1.83.0 armhf 1.83.0-2.1+b1 [315 kB] Get: 90 http://deb.debian.org/debian trixie/main armhf libboost-serialization1.83-dev armhf 1.83.0-2.1+b1 [385 kB] Get: 91 http://deb.debian.org/debian trixie/main armhf libboost-date-time1.83-dev armhf 1.83.0-2.1+b1 [239 kB] Get: 92 http://deb.debian.org/debian trixie/main armhf libboost-dev armhf 1.83.0.2+b2 [3832 B] Get: 93 http://deb.debian.org/debian trixie/main armhf libboost-filesystem1.83.0 armhf 1.83.0-2.1+b1 [270 kB] Get: 94 http://deb.debian.org/debian trixie/main armhf libboost-system1.83.0 armhf 1.83.0-2.1+b1 [230 kB] Get: 95 http://deb.debian.org/debian trixie/main armhf libboost-system1.83-dev armhf 1.83.0-2.1+b1 [231 kB] Get: 96 http://deb.debian.org/debian trixie/main armhf libboost-filesystem1.83-dev armhf 1.83.0-2.1+b1 [284 kB] Get: 97 http://deb.debian.org/debian trixie/main armhf libboost-filesystem-dev armhf 1.83.0.2+b2 [3616 B] Get: 98 http://deb.debian.org/debian trixie/main armhf libboost-regex1.83.0 armhf 1.83.0-2.1+b1 [307 kB] Get: 99 http://deb.debian.org/debian trixie/main armhf libicu-dev armhf 72.1-4+b1 [10.1 MB] Get: 100 http://deb.debian.org/debian trixie/main armhf libboost-regex1.83-dev armhf 1.83.0-2.1+b1 [335 kB] Get: 101 http://deb.debian.org/debian trixie/main armhf libboost-iostreams1.83-dev armhf 1.83.0-2.1+b1 [260 kB] Get: 102 http://deb.debian.org/debian trixie/main armhf libboost-iostreams-dev armhf 1.83.0.2+b2 [3568 B] Get: 103 http://deb.debian.org/debian trixie/main armhf libboost-program-options1.83.0 armhf 1.83.0-2.1+b1 [327 kB] Get: 104 http://deb.debian.org/debian trixie/main armhf libboost-program-options1.83-dev armhf 1.83.0-2.1+b1 [370 kB] Get: 105 http://deb.debian.org/debian trixie/main armhf libboost-program-options-dev armhf 1.83.0.2+b2 [3604 B] Get: 106 http://deb.debian.org/debian trixie/main armhf libboost-system-dev armhf 1.83.0.2+b2 [3724 B] Get: 107 http://deb.debian.org/debian trixie/main armhf libboost-thread1.83.0 armhf 1.83.0-2.1+b1 [261 kB] Get: 108 http://deb.debian.org/debian trixie/main armhf libboost-thread1.83-dev armhf 1.83.0-2.1+b1 [276 kB] Get: 109 http://deb.debian.org/debian trixie/main armhf libboost-thread-dev armhf 1.83.0.2+b2 [3612 B] Get: 110 http://deb.debian.org/debian trixie/main armhf libbsd0 armhf 0.12.2-1 [127 kB] Get: 111 http://deb.debian.org/debian trixie/main armhf libcups2t64 armhf 2.4.7-1.2+b1 [213 kB] Get: 112 http://deb.debian.org/debian trixie/main armhf libcurl3t64-gnutls armhf 8.7.1-5 [385 kB] Get: 113 http://deb.debian.org/debian trixie/main armhf libcurl4-gnutls-dev armhf 8.7.1-5 [499 kB] Get: 114 http://deb.debian.org/debian trixie/main armhf libdeflate0 armhf 1.20-1 [35.9 kB] Get: 115 http://deb.debian.org/debian trixie/main armhf libdeflate-dev armhf 1.20-1 [44.0 kB] Get: 116 http://deb.debian.org/debian trixie/main armhf libdouble-conversion3 armhf 3.3.0-1+b1 [38.5 kB] Get: 117 http://deb.debian.org/debian trixie/main armhf libdrm-common all 2.4.120-2 [7688 B] Get: 118 http://deb.debian.org/debian trixie/main armhf libdrm2 armhf 2.4.120-2 [33.8 kB] Get: 119 http://deb.debian.org/debian trixie/main armhf libdrm-amdgpu1 armhf 2.4.120-2 [20.0 kB] Get: 120 http://deb.debian.org/debian trixie/main armhf libdrm-nouveau2 armhf 2.4.120-2 [16.9 kB] Get: 121 http://deb.debian.org/debian trixie/main armhf libdrm-radeon1 armhf 2.4.120-2 [19.5 kB] Get: 122 http://deb.debian.org/debian trixie/main armhf libedit2 armhf 3.1-20230828-1+b1 [77.6 kB] Get: 123 http://deb.debian.org/debian trixie/main armhf libglvnd0 armhf 1.7.0-1+b1 [52.2 kB] Get: 124 http://deb.debian.org/debian trixie/main armhf libwayland-server0 armhf 1.22.0-2.1+b1 [26.7 kB] Get: 125 http://deb.debian.org/debian trixie/main armhf libxau6 armhf 1:1.0.9-1+b1 [17.4 kB] Get: 126 http://deb.debian.org/debian trixie/main armhf libxdmcp6 armhf 1:1.1.2-3+b1 [23.0 kB] Get: 127 http://deb.debian.org/debian trixie/main armhf libxcb1 armhf 1.15-1 [140 kB] Get: 128 http://deb.debian.org/debian trixie/main armhf libxcb-randr0 armhf 1.15-1 [116 kB] Get: 129 http://deb.debian.org/debian trixie/main armhf libgbm1 armhf 24.0.6-1+b1 [37.6 kB] Get: 130 http://deb.debian.org/debian trixie/main armhf libglapi-mesa armhf 24.0.6-1+b1 [43.4 kB] Get: 131 http://deb.debian.org/debian trixie/main armhf libwayland-client0 armhf 1.22.0-2.1+b1 [20.4 kB] Get: 132 http://deb.debian.org/debian trixie/main armhf libx11-data all 2:1.8.7-1 [328 kB] Get: 133 http://deb.debian.org/debian trixie/main armhf libx11-6 armhf 2:1.8.7-1+b1 [739 kB] Get: 134 http://deb.debian.org/debian trixie/main armhf libx11-xcb1 armhf 2:1.8.7-1+b1 [232 kB] Get: 135 http://deb.debian.org/debian trixie/main armhf libxcb-dri2-0 armhf 1.15-1 [107 kB] Get: 136 http://deb.debian.org/debian trixie/main armhf libxcb-dri3-0 armhf 1.15-1 [107 kB] Get: 137 http://deb.debian.org/debian trixie/main armhf libxcb-present0 armhf 1.15-1 [105 kB] Get: 138 http://deb.debian.org/debian trixie/main armhf libxcb-sync1 armhf 1.15-1 [108 kB] Get: 139 http://deb.debian.org/debian trixie/main armhf libxcb-xfixes0 armhf 1.15-1 [110 kB] Get: 140 http://deb.debian.org/debian trixie/main armhf libxshmfence1 armhf 1.3-1+b1 [8628 B] Get: 141 http://deb.debian.org/debian trixie/main armhf libegl-mesa0 armhf 24.0.6-1+b1 [98.8 kB] Get: 142 http://deb.debian.org/debian trixie/main armhf libegl1 armhf 1.7.0-1+b1 [29.1 kB] Get: 143 http://deb.debian.org/debian trixie/main armhf libxcb-glx0 armhf 1.15-1 [120 kB] Get: 144 http://deb.debian.org/debian trixie/main armhf libxcb-shm0 armhf 1.15-1 [106 kB] Get: 145 http://deb.debian.org/debian trixie/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 146 http://deb.debian.org/debian trixie/main armhf libxfixes3 armhf 1:6.0.0-2+b1 [18.6 kB] Get: 147 http://deb.debian.org/debian trixie/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.2 kB] Get: 148 http://deb.debian.org/debian trixie/main armhf libvulkan1 armhf 1.3.280.0-1 [108 kB] Get: 149 http://deb.debian.org/debian trixie/main armhf libz3-4 armhf 4.8.12-3.1+b2 [6324 kB] Get: 150 http://deb.debian.org/debian trixie/main armhf libllvm17t64 armhf 1:17.0.6-12 [21.6 MB] Get: 151 http://deb.debian.org/debian trixie/main armhf libsensors-config all 1:3.6.0-9 [14.6 kB] Get: 152 http://deb.debian.org/debian trixie/main armhf libsensors5 armhf 1:3.6.0-9 [31.9 kB] Get: 153 http://deb.debian.org/debian trixie/main armhf libgl1-mesa-dri armhf 24.0.6-1+b1 [6475 kB] Get: 154 http://deb.debian.org/debian trixie/main armhf libglx-mesa0 armhf 24.0.6-1+b1 [130 kB] Get: 155 http://deb.debian.org/debian trixie/main armhf libglx0 armhf 1.7.0-1+b1 [32.6 kB] Get: 156 http://deb.debian.org/debian trixie/main armhf libgl1 armhf 1.7.0-1+b1 [91.1 kB] Get: 157 http://deb.debian.org/debian trixie/main armhf xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 158 http://deb.debian.org/debian trixie/main armhf x11proto-dev all 2024.1-1 [603 kB] Get: 159 http://deb.debian.org/debian trixie/main armhf libxau-dev armhf 1:1.0.9-1+b1 [20.8 kB] Get: 160 http://deb.debian.org/debian trixie/main armhf libxdmcp-dev armhf 1:1.1.2-3+b1 [39.3 kB] Get: 161 http://deb.debian.org/debian trixie/main armhf xtrans-dev all 1.4.0-1 [98.7 kB] Get: 162 http://deb.debian.org/debian trixie/main armhf libpthread-stubs0-dev armhf 0.4-1+b1 [5340 B] Get: 163 http://deb.debian.org/debian trixie/main armhf libxcb1-dev armhf 1.15-1 [179 kB] Get: 164 http://deb.debian.org/debian trixie/main armhf libx11-dev armhf 2:1.8.7-1+b1 [818 kB] Get: 165 http://deb.debian.org/debian trixie/main armhf libglx-dev armhf 1.7.0-1+b1 [15.8 kB] Get: 166 http://deb.debian.org/debian trixie/main armhf libgl-dev armhf 1.7.0-1+b1 [101 kB] Get: 167 http://deb.debian.org/debian trixie/main armhf libegl-dev armhf 1.7.0-1+b1 [19.5 kB] Get: 168 http://deb.debian.org/debian trixie/main armhf libpkgconf3 armhf 1.8.1-1+b2 [31.9 kB] Get: 169 http://deb.debian.org/debian trixie/main armhf pkgconf-bin armhf 1.8.1-1+b2 [28.9 kB] Get: 170 http://deb.debian.org/debian trixie/main armhf pkgconf armhf 1.8.1-1+b2 [26.2 kB] Get: 171 http://deb.debian.org/debian trixie/main armhf pkg-config armhf 1.8.1-1+b2 [14.0 kB] Get: 172 http://deb.debian.org/debian trixie/main armhf libeigen3-dev all 3.4.0-4 [1041 kB] Get: 173 http://deb.debian.org/debian trixie/main armhf libevdev2 armhf 1.13.1+dfsg-1+b1 [26.5 kB] Get: 174 http://deb.debian.org/debian trixie/main armhf libgles1 armhf 1.7.0-1+b1 [12.2 kB] Get: 175 http://deb.debian.org/debian trixie/main armhf libgles2 armhf 1.7.0-1+b1 [17.7 kB] Get: 176 http://deb.debian.org/debian trixie/main armhf libgles-dev armhf 1.7.0-1+b1 [50.8 kB] Get: 177 http://deb.debian.org/debian trixie/main armhf libglib2.0-0t64 armhf 2.80.1-1 [1314 kB] Get: 178 http://deb.debian.org/debian trixie/main armhf libgraphite2-3 armhf 1.3.14-2 [63.2 kB] Get: 179 http://deb.debian.org/debian trixie/main armhf libgudev-1.0-0 armhf 238-5 [12.6 kB] Get: 180 http://deb.debian.org/debian trixie/main armhf libharfbuzz0b armhf 8.3.0-2+b1 [2156 kB] Get: 181 http://deb.debian.org/debian trixie/main armhf libhtscodecs2 armhf 1.6.0-1+b1 [61.3 kB] Get: 182 http://deb.debian.org/debian trixie/main armhf libhts3t64 armhf 1.19+ds-1.1+b1 [395 kB] Get: 183 http://deb.debian.org/debian trixie/main armhf liblzma-dev armhf 5.6.1+really5.4.5-1 [281 kB] Get: 184 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1 [904 kB] Get: 185 http://deb.debian.org/debian trixie/main armhf libhts-dev armhf 1.19+ds-1.1+b1 [1598 kB] Get: 186 http://deb.debian.org/debian trixie/main armhf x11-common all 1:7.7+23 [252 kB] Get: 187 http://deb.debian.org/debian trixie/main armhf libice6 armhf 2:1.0.10-1+b1 [50.1 kB] Get: 188 http://deb.debian.org/debian trixie/main armhf libwacom-common all 2.10.0-2 [62.5 kB] Get: 189 http://deb.debian.org/debian trixie/main armhf libwacom9 armhf 2.10.0-2 [19.6 kB] Get: 190 http://deb.debian.org/debian trixie/main armhf libinput-bin armhf 1.25.0-1+b2 [23.1 kB] Get: 191 http://deb.debian.org/debian trixie/main armhf libmtdev1t64 armhf 1.1.6-1.2 [21.0 kB] Get: 192 http://deb.debian.org/debian trixie/main armhf libinput10 armhf 1.25.0-1+b2 [110 kB] Get: 193 http://deb.debian.org/debian trixie/main armhf libjpeg62-turbo armhf 1:2.1.5-3 [143 kB] Get: 194 http://deb.debian.org/debian trixie/main armhf libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get: 195 http://deb.debian.org/debian trixie/main armhf libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get: 196 http://deb.debian.org/debian trixie/main armhf libjs-filesaver all 2.0.4+dfsg+~2.0.5-2 [9776 B] Get: 197 http://deb.debian.org/debian trixie/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 198 http://deb.debian.org/debian trixie/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 199 http://deb.debian.org/debian trixie/main armhf libmd4c0 armhf 0.4.8-1+b1 [40.0 kB] Get: 200 http://deb.debian.org/debian trixie/main armhf libpcre2-16-0 armhf 10.42-4+b1 [212 kB] Get: 201 http://deb.debian.org/debian trixie/main armhf libpwizlite3t64 armhf 3.0.5-2.1+b1 [687 kB] Get: 202 http://deb.debian.org/debian trixie/main armhf libpwizlite-dev armhf 3.0.5-2.1+b1 [1153 kB] Get: 203 http://deb.debian.org/debian trixie/main armhf shared-mime-info armhf 2.4-4 [753 kB] Get: 204 http://deb.debian.org/debian trixie/main armhf libqt5core5t64 armhf 5.15.10+dfsg-7.2+b1 [1577 kB] Get: 205 http://deb.debian.org/debian trixie/main armhf libqt5concurrent5t64 armhf 5.15.10+dfsg-7.2+b1 [42.5 kB] Get: 206 http://deb.debian.org/debian trixie/main armhf libqt5dbus5t64 armhf 5.15.10+dfsg-7.2+b1 [190 kB] Get: 207 http://deb.debian.org/debian trixie/main armhf libqt5network5t64 armhf 5.15.10+dfsg-7.2+b1 [598 kB] Get: 208 http://deb.debian.org/debian trixie/main armhf libsm6 armhf 2:1.2.3-1+b1 [31.7 kB] Get: 209 http://deb.debian.org/debian trixie/main armhf libxcb-icccm4 armhf 0.4.1-1.1+b1 [25.7 kB] Get: 210 http://deb.debian.org/debian trixie/main armhf libxcb-util1 armhf 0.4.0-1+b1 [22.2 kB] Get: 211 http://deb.debian.org/debian trixie/main armhf libxcb-image0 armhf 0.4.0-2+b1 [21.1 kB] Get: 212 http://deb.debian.org/debian trixie/main armhf libxcb-keysyms1 armhf 0.4.0-1+b2 [15.8 kB] Get: 213 http://deb.debian.org/debian trixie/main armhf libxcb-render0 armhf 1.15-1 [114 kB] Get: 214 http://deb.debian.org/debian trixie/main armhf libxcb-render-util0 armhf 0.3.9-1+b1 [17.4 kB] Get: 215 http://deb.debian.org/debian trixie/main armhf libxcb-shape0 armhf 1.15-1 [106 kB] Get: 216 http://deb.debian.org/debian trixie/main armhf libxcb-xinerama0 armhf 1.15-1 [105 kB] Get: 217 http://deb.debian.org/debian trixie/main armhf libxcb-xinput0 armhf 1.15-1 [127 kB] Get: 218 http://deb.debian.org/debian trixie/main armhf libxcb-xkb1 armhf 1.15-1 [127 kB] Get: 219 http://deb.debian.org/debian trixie/main armhf xkb-data all 2.41-2 [795 kB] Get: 220 http://deb.debian.org/debian trixie/main armhf libxkbcommon0 armhf 1.6.0-1+b1 [96.9 kB] Get: 221 http://deb.debian.org/debian trixie/main armhf libxkbcommon-x11-0 armhf 1.6.0-1+b1 [14.5 kB] Get: 222 http://deb.debian.org/debian trixie/main armhf libxrender1 armhf 1:0.9.10-1.1+b1 [24.9 kB] Get: 223 http://deb.debian.org/debian trixie/main armhf libqt5gui5t64 armhf 5.15.10+dfsg-7.2+b1 [2650 kB] Get: 224 http://deb.debian.org/debian trixie/main armhf libqt5widgets5t64 armhf 5.15.10+dfsg-7.2+b1 [2105 kB] Get: 225 http://deb.debian.org/debian trixie/main armhf libqt5printsupport5t64 armhf 5.15.10+dfsg-7.2+b1 [187 kB] Get: 226 http://deb.debian.org/debian trixie/main armhf libqt5sql5t64 armhf 5.15.10+dfsg-7.2+b1 [110 kB] Get: 227 http://deb.debian.org/debian trixie/main armhf libqt5test5t64 armhf 5.15.10+dfsg-7.2+b1 [134 kB] Get: 228 http://deb.debian.org/debian trixie/main armhf libqt5xml5t64 armhf 5.15.10+dfsg-7.2+b1 [110 kB] Get: 229 http://deb.debian.org/debian trixie/main armhf libvulkan-dev armhf 1.3.280.0-1 [1348 kB] Get: 230 http://deb.debian.org/debian trixie/main armhf libxerces-c3.2t64 armhf 3.2.4+debian-1.3 [744 kB] Get: 231 http://deb.debian.org/debian trixie/main armhf libxerces-c-dev armhf 3.2.4+debian-1.3 [1551 kB] Get: 232 http://deb.debian.org/debian trixie/main armhf libxext-dev armhf 2:1.3.4-1+b1 [103 kB] Get: 233 http://deb.debian.org/debian trixie/main armhf nlohmann-json3-dev all 3.11.3-1 [261 kB] Get: 234 http://deb.debian.org/debian trixie/main armhf node-jquery all 3.6.1+dfsg+~3.5.14-1 [160 kB] Get: 235 http://deb.debian.org/debian trixie/main armhf python3-roman all 3.3-3 [9880 B] Get: 236 http://deb.debian.org/debian trixie/main armhf python3-docutils all 0.20.1+dfsg-3 [389 kB] Get: 237 http://deb.debian.org/debian trixie/main armhf qt5-qmake-bin armhf 5.15.10+dfsg-7.2+b1 [902 kB] Get: 238 http://deb.debian.org/debian trixie/main armhf qtchooser armhf 66-2 [23.6 kB] Get: 239 http://deb.debian.org/debian trixie/main armhf qt5-qmake armhf 5.15.10+dfsg-7.2+b1 [223 kB] Get: 240 http://deb.debian.org/debian trixie/main armhf qtbase5-dev-tools armhf 5.15.10+dfsg-7.2+b1 [651 kB] Get: 241 http://deb.debian.org/debian trixie/main armhf qtbase5-dev armhf 5.15.10+dfsg-7.2+b1 [1068 kB] Fetched 140 MB in 26s (5375 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19446 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.9-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.2-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_armhf.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:armhf (3.11.9-1) ... Setting up libexpat1:armhf (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19762 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_armhf.deb ... 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Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:armhf. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_armhf.deb ... Unpacking libpython3.11-stdlib:armhf (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_armhf.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20754 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_armhf.deb ... Unpacking python3 (3.11.8-1) ... 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Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../044-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../045-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../046-libelf1t64_0.191-1+b1_armhf.deb ... Unpacking libelf1t64:armhf (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../047-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../048-gettext_0.21-14+b1_armhf.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. 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Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libice6:armhf (2:1.0.10-1+b1) ... Setting up libxdmcp6:armhf (1:1.1.2-3+b1) ... Setting up libxcb1:armhf (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libxcb-xfixes0:armhf (1.15-1) ... Setting up libxau-dev:armhf (1:1.0.9-1+b1) ... Setting up libboost-chrono1.83-dev:armhf (1.83.0-2.1+b1) ... Setting up qt5-qmake:armhf (5.15.10+dfsg-7.2+b1) ... Setting up libxcb-xinput0:armhf (1.15-1) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:armhf (1.15-1) ... Setting up libboost-chrono-dev:armhf (1.83.0.2+b2) ... Setting up libwacom9:armhf (2.10.0-2) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libxcb-glx0:armhf (1.15-1) ... Setting up libedit2:armhf (3.1-20230828-1+b1) ... 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Setting up libllvm17t64:armhf (1:17.0.6-12) ... Setting up libpwizlite-dev:armhf (3.0.5-2.1+b1) ... Setting up libfreetype6:armhf (2.13.2+dfsg-1+b4) ... Setting up libxcb-sync1:armhf (1.15-1) ... Setting up libboost-date-time1.83-dev:armhf (1.83.0-2.1+b1) ... Setting up shared-mime-info (2.4-4) ... Setting up libxkbcommon-x11-0:armhf (1.6.0-1+b1) ... Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:armhf (1.20.1-6+b1) ... Setting up libboost-regex1.83-dev:armhf (1.83.0-2.1+b1) ... Setting up pkg-config:armhf (1.8.1-1+b2) ... Setting up libreadline8t64:armhf (8.2-4) ... Setting up libxcb-dri2-0:armhf (1.15-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libdrm2:armhf (2.4.120-2) ... Setting up groff-base (1.23.0-4) ... Setting up libxcb-randr0:armhf (1.15-1) ... Setting up xml-core (0.19) ... Setting up libx11-6:armhf (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:armhf (8.3.0-2+b1) ... Setting up libfontconfig1:armhf (2.15.0-1.1) ... Setting up libsm6:armhf (2:1.2.3-1+b1) ... Setting up libarchive13t64:armhf (3.7.2-2) ... Setting up libavahi-client3:armhf (0.8-13+b2) ... Setting up libboost-filesystem-dev:armhf (1.83.0.2+b2) ... Setting up libdrm-amdgpu1:armhf (2.4.120-2) ... Setting up libboost-thread1.83-dev:armhf (1.83.0-2.1+b1) ... Setting up libxcb-dri3-0:armhf (1.15-1) ... Setting up libinput10:armhf (1.25.0-1+b2) ... Setting up libx11-xcb1:armhf (2:1.8.7-1+b1) ... Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:armhf (2.4.120-2) ... Setting up libxcb1-dev:armhf (1.15-1) ... Setting up libxrender1:armhf (1:0.9.10-1.1+b1) ... Setting up libcurl4t64:armhf (8.7.1-5) ... Setting up libgbm1:armhf (24.0.6-1+b1) ... Setting up libdrm-radeon1:armhf (2.4.120-2) ... Setting up libboost-iostreams1.83-dev:armhf (1.83.0-2.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:armhf (3.11.9-1) ... Setting up libgl1-mesa-dri:armhf (24.0.6-1+b1) ... Setting up libx11-dev:armhf (2:1.8.7-1+b1) ... Setting up libcurl3t64-gnutls:armhf (8.7.1-5) ... Setting up libxext6:armhf (2:1.3.4-1+b1) ... Setting up libboost-iostreams-dev:armhf (1.83.0.2+b2) ... Setting up libxerces-c3.2t64:armhf (3.2.4+debian-1.3) ... Setting up libcurl4-gnutls-dev:armhf (8.7.1-5) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ... Setting up libqt5core5t64:armhf (5.15.10+dfsg-7.2+b1) ... Setting up libegl-mesa0:armhf (24.0.6-1+b1) ... Setting up libxfixes3:armhf (1:6.0.0-2+b1) ... Setting up libxerces-c-dev:armhf (3.2.4+debian-1.3) ... Setting up libxext-dev:armhf (2:1.3.4-1+b1) ... Setting up libegl1:armhf (1.7.0-1+b1) ... Setting up libqt5sql5t64:armhf (5.15.10+dfsg-7.2+b1) ... Setting up cmake (3.29.2-2) ... Setting up libhts3t64:armhf (1.19+ds-1.1+b1) ... Setting up libcups2t64:armhf (2.4.7-1.2+b1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/toppic-1.5.3+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../toppic_1.5.3+dfsg1-1_source.changes dpkg-buildpackage: info: source package toppic dpkg-buildpackage: info: source version 1.5.3+dfsg1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Filippo Rusconi dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1' rm -f debian/topfd.1 rm -f debian/toppic.1 rm -f debian/topmg.1 rm -f debian/topdiff.1 dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/toppic.substvars debian/toppic-common.substvars debian/files rm -fr -- debian/toppic/ debian/tmp/ debian/toppic-common/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/toppic.substvars debian/toppic-common.substvars debian/files rm -fr -- debian/toppic/ debian/tmp/ debian/toppic-common/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1' rst2man debian/topfd.1.rst > debian/topfd.1 rst2man debian/toppic.1.rst > debian/toppic.1 rst2man debian/topmg.1.rst > debian/topmg.1 rst2man debian/topdiff.1.rst > debian/topdiff.1 dh_auto_configure -- \ -DCMAKE_INSTALL_PREFIX="/" \ -DCMAKE_BUILD_TYPE=release cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DCMAKE_INSTALL_PREFIX=/ -DCMAKE_BUILD_TYPE=release .. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- system name Linux -- PwizLite_INCLUDE_DIRS: /usr/include/pwizlite -- PwizLite_LIBRARIES: /usr/lib/arm-linux-gnueabihf/libpwizlite.so.3.0.5 -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") The PkgConfig package was found. -- Checking for one of the modules 'htslib;libhts;hts' -- HtsLib_INCLUDE_DIRS: /usr/include -- HtsLib_LIBRARIES: hts -- cmake cxx flags -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=$ORIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -- Configuring done (8.1s) -- Generating done (6.9s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf make[1]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1' dh_auto_build -O--buildsystem=cmake cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" 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/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topindex_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topfd_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_autogen_timestamp_deps.dir/build make -f CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'CMakeFiles/topfd_autogen_timestamp_deps.dir/build'. make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topindex_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'CMakeFiles/topindex_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 0%] Built target topfd_gui_autogen_timestamp_deps make -f CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/depend [ 0%] Built target topfd_autogen_timestamp_deps make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make -f CMakeFiles/toppic_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/toppic_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" [ 0%] Built target topindex_autogen_timestamp_deps make -f CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/depend make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/toppic_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'CMakeFiles/toppic_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 0%] Built target topindex_gui_autogen_timestamp_deps make -f CMakeFiles/topmg_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_autogen_timestamp_deps.dir/depend make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmg_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 0%] Built target toppic_autogen_timestamp_deps make -f CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topmg_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'CMakeFiles/topmg_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 0%] Built target toppic_gui_autogen_timestamp_deps make -f CMakeFiles/topdiff_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 0%] Built target topmg_autogen_timestamp_deps make -f CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build make -f CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topdiff_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'CMakeFiles/topdiff_autogen_timestamp_deps.dir/build'. [ 0%] Built target topmg_gui_autogen_timestamp_deps make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topmerge_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmerge_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 0%] Built target topdiff_autogen_timestamp_deps make -f CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" [ 0%] Built target topdiff_gui_autogen_timestamp_deps make -f CMakeFiles/topconvert_autogen_timestamp_deps.dir/build.make CMakeFiles/topconvert_autogen_timestamp_deps.dir/depend make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topmerge_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topconvert_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'CMakeFiles/topmerge_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topconvert_autogen_timestamp_deps.dir/build.make CMakeFiles/topconvert_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'CMakeFiles/topconvert_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build [ 0%] Built target topmerge_autogen_timestamp_deps make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topfd_autogen.dir/DependInfo.cmake "--color=" [ 0%] Built target topconvert_autogen_timestamp_deps make -f CMakeFiles/topfd_gui_autogen.dir/build.make CMakeFiles/topfd_gui_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topfd_gui_autogen.dir/DependInfo.cmake "--color=" [ 0%] Built target topmerge_gui_autogen_timestamp_deps make -f CMakeFiles/topindex_autogen.dir/build.make CMakeFiles/topindex_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topindex_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topfd_gui_autogen.dir/build.make CMakeFiles/topfd_gui_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 0%] Automatic MOC and UIC for target topfd /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topfd_autogen.dir/AutogenInfo.json release make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topindex_autogen.dir/build.make CMakeFiles/topindex_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 0%] Automatic MOC and UIC for target topfd_gui /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topfd_gui_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topfd_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf [ 0%] Automatic MOC and UIC for target topindex /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topindex_autogen.dir/AutogenInfo.json release AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topfd_argument.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topindex_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.hpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.hpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.hpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/co_table.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.hpp" AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.hpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.hpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.hpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.hpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/gui/topfd/threadtopfd.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/gui/topfd/topfddialog.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topfd.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/console/topfd_argument.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.hpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/co_table.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.hpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.hpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.hpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.hpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/console/topindex_argument.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/gui/topfd/threadtopfd.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/console/topindex_process.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/gui/topfd/topfd_gui.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/gui/topfd/topfddialog.cpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topindex.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/console/topindex_argument.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/console/topindex_process.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.cpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/co_table.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/co_table.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topindex_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topindex_autogen/deps" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.cpp" AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.cpp" AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.cpp" AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topindex_autogen.dir/ParseCache.txt" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.cpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.cpp" AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topindex_autogen.dir/AutogenUsed.txt" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.cpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.cpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.cpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.cpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.cpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.cpp" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/timestamp AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topfd_autogen/mocs_compilation.cpp" AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/threadtopfd.hpp" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/threadtopfd.hpp AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topfd_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topfd_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topfd_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 0%] Built target topfd_autogen make -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/depend [ 0%] Built target topindex_autogen make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topindex_gui_autogen.dir/DependInfo.cmake "--color=" make -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/toppic_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 0%] Automatic MOC and UIC for target toppic /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/toppic_autogen.dir/AutogenInfo.json release [ 0%] Automatic MOC and UIC for target topindex_gui /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topindex_gui_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/toppic_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topindex_argument.hpp" AutoGen: Parsing "SRC:/src/console/topindex_process.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/gui/topindex/threadtopindex.h" AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.h" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topindex_argument.cpp" AutoGen: Parsing "SRC:/src/console/topindex_process.cpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/gui/topindex/threadtopindex.cpp" AutoGen: Parsing "SRC:/src/gui/topindex/topindex_gui.cpp" AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.cpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/threadtopindex.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/threadtopindex.h AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" AutoGen: Parsing "SRC:/src/console/toppic_process.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.hpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/toppic.cpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" AutoGen: Parsing "SRC:/src/console/toppic_process.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/toppic_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/toppic_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/toppic_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/toppic_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 0%] Built target toppic_autogen make -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/toppic_gui_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 1%] Automatic MOC and UIC for target toppic_gui /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/toppic_gui_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" AutoGen: Parsing "SRC:/src/console/toppic_process.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/gui/toppic/threadtoppic.h" AutoGen: Parsing "SRC:/src/gui/toppic/toppicwindow.h" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.hpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" AutoGen: Parsing "SRC:/src/console/toppic_process.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/gui/toppic/threadtoppic.cpp" AutoGen: Parsing "SRC:/src/gui/toppic/toppic_gui.cpp" AutoGen: Parsing "SRC:/src/gui/toppic/toppicwindow.cpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/threadtoppic.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/threadtoppic.h AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp.d" AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.hpp" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfddialog.hpp AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp.d" AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindexdialog.h AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp.d" AutoUic: Generating "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/include/ui_topfddialog.h", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.ui" /usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include/ui_topfddialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfddialog.ui AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topfd_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topfd_gui_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 1%] Built target topfd_gui_autogen make -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmg_autogen.dir/DependInfo.cmake "--color=" AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp.d" AutoUic: Generating "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.ui" /usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindexdialog.ui make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topindex_gui_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topindex_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topindex_gui_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/timestamp [ 1%] Automatic MOC and UIC for target topmg /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmg_autogen.dir/AutogenInfo.json release make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 1%] Built target topindex_gui_autogen AutoGen: Refreshing parse cache because it doesn't exist. make -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/depend AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topmg_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmg_gui_autogen.dir/DependInfo.cmake "--color=" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/build AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topmg_argument.hpp" AutoGen: Parsing "SRC:/src/console/topmg_process.hpp" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" AutoGen: Parsing "SRC:/src/search/graph/dist.hpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.hpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.hpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.hpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph.hpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.hpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.hpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.hpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topmg.cpp" AutoGen: Parsing "SRC:/src/console/topmg_argument.cpp" [ 1%] Automatic MOC and UIC for target topmg_gui AutoGen: Parsing "SRC:/src/console/topmg_process.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmg_gui_autogen.dir/AutogenInfo.json release AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" AutoGen: Parsing "SRC:/src/search/graph/dist.cpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.cpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.cpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.cpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph.cpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.cpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.cpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.cpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.cpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.cpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.cpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topmg_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topmg_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topmg_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topmg_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/timestamp AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topmg_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topmg_argument.hpp" AutoGen: Parsing "SRC:/src/console/topmg_process.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/gui/topmg/threadtopmg.h" AutoGen: Parsing "SRC:/src/gui/topmg/topmgwindow.h" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" AutoGen: Parsing "SRC:/src/search/graph/dist.hpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.hpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.hpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.hpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph.hpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.hpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.hpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.hpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topmg_argument.cpp" AutoGen: Parsing "SRC:/src/console/topmg_process.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/gui/topmg/threadtopmg.cpp" AutoGen: Parsing "SRC:/src/gui/topmg/topmg_gui.cpp" AutoGen: Parsing "SRC:/src/gui/topmg/topmgwindow.cpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" [ 1%] Built target topmg_autogen AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" make -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/depend AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_autogen.dir/DependInfo.cmake "--color=" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" AutoGen: Parsing "SRC:/src/search/graph/dist.cpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.cpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.cpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.cpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph.cpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.cpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.cpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.cpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.cpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.cpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.cpp" AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp", because it doesn't exist, from "SRC:/src/gui/topmg/threadtopmg.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/threadtopmg.h make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 1%] Automatic MOC and UIC for target topdiff /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topdiff_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp" AutoGen: Parsing "SRC:/src/console/topdiff_process.hpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm.hpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topdiff.cpp" AutoGen: Parsing "SRC:/src/console/topdiff_argument.cpp" AutoGen: Parsing "SRC:/src/console/topdiff_process.cpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm.cpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topdiff_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topdiff_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 1%] Built target topdiff_autogen make -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_gui_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 1%] Automatic MOC and UIC for target topdiff_gui /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_gui_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp" AutoGen: Parsing "SRC:/src/console/topdiff_process.hpp" AutoGen: Parsing "SRC:/src/gui/topdiff/threadtopdiff.h" AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.h" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/merge/feature_prsm.hpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topdiff_argument.cpp" AutoGen: Parsing "SRC:/src/console/topdiff_process.cpp" AutoGen: Parsing "SRC:/src/gui/topdiff/threadtopdiff.cpp" AutoGen: Parsing "SRC:/src/gui/topdiff/topdiff_gui.cpp" AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.cpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm.cpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/threadtopdiff.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/threadtopdiff.h AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp.d" AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiffdialog.h AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp.d" AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.h AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp.d" AutoUic: Generating "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include/gui/topdiff/ui_topdiffdialog.h", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.ui" /usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include/gui/topdiff/ui_topdiffdialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiffdialog.ui AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_gui_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 1%] Built target topdiff_gui_autogen make -f CMakeFiles/topmerge_autogen.dir/build.make CMakeFiles/topmerge_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmerge_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topmerge_autogen.dir/build.make CMakeFiles/topmerge_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 1%] Automatic MOC and UIC for target topmerge /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmerge_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topmerge_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topmerge_argument.hpp" AutoGen: Parsing "SRC:/src/console/topmerge_process.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: 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"SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" AutoGen: 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"SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topmerge.cpp" AutoGen: Parsing "SRC:/src/console/topmerge_argument.cpp" AutoGen: Parsing "SRC:/src/console/topmerge_process.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: 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"SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topmerge_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topmerge_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topmerge_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topmerge_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 1%] Built target topmerge_autogen make -f CMakeFiles/topmerge_gui_autogen.dir/build.make CMakeFiles/topmerge_gui_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmerge_gui_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topmerge_gui_autogen.dir/build.make CMakeFiles/topmerge_gui_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 1%] Automatic MOC and UIC for target topmerge_gui /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topmerge_gui_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topmerge_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: 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"SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topmerge_argument.hpp" AutoGen: Parsing "SRC:/src/console/topmerge_process.hpp" AutoGen: Parsing "SRC:/src/gui/topmerge/threadtopmerge.h" AutoGen: Parsing "SRC:/src/gui/topmerge/topmergedialog.h" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing 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"SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: 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"SRC:/src/stat/local/local_mng.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topmerge_argument.cpp" AutoGen: Parsing "SRC:/src/console/topmerge_process.cpp" AutoGen: Parsing "SRC:/src/gui/topmerge/threadtopmerge.cpp" AutoGen: Parsing "SRC:/src/gui/topmerge/topmerge_gui.cpp" AutoGen: Parsing "SRC:/src/gui/topmerge/topmergedialog.cpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: 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"SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp", because it doesn't exist, from "SRC:/src/gui/topmerge/threadtopmerge.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/threadtopmerge.h AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp.d" AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp", because it doesn't exist, from "SRC:/src/gui/topmerge/topmergedialog.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmergedialog.h AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp.d" AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.h AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp.d" AutoUic: Generating "SRC:/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include/gui/topmerge/ui_topmergedialog.h", because it doesn't exist, from "SRC:/src/gui/topmerge/topmergedialog.ui" /usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include/gui/topmerge/ui_topmergedialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmergedialog.ui AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topmerge_gui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topmerge_gui_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topmerge_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topmerge_gui_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 1%] Built target topmerge_gui_autogen make -f CMakeFiles/topconvert_autogen.dir/build.make CMakeFiles/topconvert_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topconvert_autogen.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topconvert_autogen.dir/build.make CMakeFiles/topconvert_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 1%] Automatic MOC and UIC for target topconvert /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topconvert_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-arm-linux-gnueabihf/topconvert_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.29/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/13 -I/usr/include/arm-linux-gnueabihf/c++/13 -I/usr/include/c++/13/backward -I/usr/lib/gcc/arm-linux-gnueabihf/13/include -I/usr/local/include -I/usr/include/arm-linux-gnueabihf AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/console/topconvert_process.hpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/console/topconvert.cpp" AutoGen: Parsing "SRC:/src/console/topconvert_process.cpp" AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topconvert_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topconvert_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topconvert_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topconvert_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 1%] Built target topconvert_autogen make -f CMakeFiles/topfd.dir/build.make CMakeFiles/topfd.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topfd.dir/DependInfo.cmake "--color=" Dependencies file "topfd_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topfd.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target topfd make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topfd.dir/build.make CMakeFiles/topfd.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 1%] Building CXX object CMakeFiles/topfd.dir/topfd_autogen/mocs_compilation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/topfd_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topfd.dir/topfd_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topfd.dir/topfd_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/mocs_compilation.cpp [ 1%] Building CXX object CMakeFiles/topfd.dir/src/console/topfd.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/console/topfd.cpp.o -MF CMakeFiles/topfd.dir/src/console/topfd.cpp.o.d -o CMakeFiles/topfd.dir/src/console/topfd.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topfd.cpp AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp.d" AutoUic: Generating "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/include/ui_toppicwindow.h", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.ui" /usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include/ui_toppicwindow.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.ui AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/toppic_gui_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/toppic_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/toppic_gui_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 1%] Built target toppic_gui_autogen make -f CMakeFiles/topfd_gui.dir/build.make CMakeFiles/topfd_gui.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 1%] Automatic RCC for src/gui/topfd/icon.qrc /usr/bin/cmake -E cmake_autorcc /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topfd_gui_autogen.dir/AutoRcc_icon_HZKSH7CGSX_Info.json release AutoRcc: Generating "SRC:/obj-arm-linux-gnueabihf/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/icon.qrc" /usr/lib/qt5/bin/rcc -name icon -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/icon.qrc AutoRcc: Writing settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topfd_gui_autogen.dir/AutoRcc_icon_HZKSH7CGSX_Used.txt" cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topfd_gui.dir/DependInfo.cmake "--color=" Dependencies file "topfd_gui_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topfd_gui.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target topfd_gui make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topfd_gui.dir/build.make CMakeFiles/topfd_gui.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 1%] Building CXX object CMakeFiles/topfd_gui.dir/topfd_gui_autogen/mocs_compilation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/topfd_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topfd_gui.dir/topfd_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topfd_gui.dir/topfd_gui_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/mocs_compilation.cpp AutoMoc: Reading dependencies from "SRC:/obj-arm-linux-gnueabihf/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp.d" AutoUic: Generating "SRC:/obj-arm-linux-gnueabihf/topmg_gui_autogen/include/ui_topmgwindow.h", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.ui" /usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include/ui_topmgwindow.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.ui AutoMoc: Generating MOC compilation "SRC:/obj-arm-linux-gnueabihf/topmg_gui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-arm-linux-gnueabihf/topmg_gui_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topmg_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-arm-linux-gnueabihf/CMakeFiles/topmg_gui_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 1%] Built target topmg_gui_autogen make -f CMakeFiles/topindex.dir/build.make CMakeFiles/topindex.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topindex.dir/DependInfo.cmake "--color=" Dependencies file "topindex_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topindex.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target topindex make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topindex.dir/build.make CMakeFiles/topindex.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 1%] Building CXX object CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/mocs_compilation.cpp [ 1%] Building CXX object CMakeFiles/topindex.dir/src/console/topindex.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/console/topindex.cpp.o -MF CMakeFiles/topindex.dir/src/console/topindex.cpp.o.d -o CMakeFiles/topindex.dir/src/console/topindex.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topindex.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/common/topfd_process.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topfd.cpp:16: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/topfd/threadtopfd.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/gui/topfd/threadtopfd.cpp.o -MF CMakeFiles/topfd_gui.dir/src/gui/topfd/threadtopfd.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/gui/topfd/threadtopfd.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/threadtopfd.cpp [ 1%] Building CXX object CMakeFiles/topindex.dir/src/console/topindex_argument.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/console/topindex_argument.cpp.o -MF CMakeFiles/topindex.dir/src/console/topindex_argument.cpp.o.d -o CMakeFiles/topindex.dir/src/console/topindex_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topindex_argument.cpp [ 1%] Building CXX object CMakeFiles/topfd.dir/src/console/topfd_argument.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/console/topfd_argument.cpp.o -MF CMakeFiles/topfd.dir/src/console/topfd_argument.cpp.o.d -o CMakeFiles/topfd.dir/src/console/topfd_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topfd_argument.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/common/topfd_process.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/threadtopfd.cpp:16: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/topfd/topfd_gui.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/gui/topfd/topfd_gui.cpp.o -MF CMakeFiles/topfd_gui.dir/src/gui/topfd/topfd_gui.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/gui/topfd/topfd_gui.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp: In function 'int main(int, char**)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 40 | QRect deskRect = desk->availableGeometry(); | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QDesktopWidget:1, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp:18: /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ [ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/topfd/topfddialog.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/gui/topfd/topfddialog.cpp.o -MF CMakeFiles/topfd_gui.dir/src/gui/topfd/topfddialog.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/gui/topfd/topfddialog.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfddialog.cpp [ 1%] Building CXX object CMakeFiles/topindex.dir/src/console/topindex_process.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/console/topindex_process.cpp.o -MF CMakeFiles/topindex.dir/src/console/topindex_process.cpp.o.d -o CMakeFiles/topindex.dir/src/console/topindex_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topindex_process.cpp [ 1%] Building CXX object CMakeFiles/topfd.dir/src/topfd/common/topfd_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/common/topfd_para.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/common/topfd_para.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/common/topfd_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/common/topfd_para.cpp [ 1%] Building CXX object CMakeFiles/topfd.dir/src/topfd/common/topfd_process.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/common/topfd_process.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/common/topfd_process.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/common/topfd_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/common/topfd_process.cpp In file included from /usr/include/boost/system/detail/requires_cxx11.hpp:9, from /usr/include/boost/system/detail/config.hpp:11, from /usr/include/boost/system/detail/error_category.hpp:13, from /usr/include/boost/system/detail/error_code.hpp:14, from /usr/include/boost/system/errc.hpp:14, from /usr/include/boost/system/system_error.hpp:9, from /usr/include/boost/thread/exceptions.hpp:22, from /usr/include/boost/thread/pthread/thread_data.hpp:10, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/common/topfd_process.cpp:24: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/common/topfd_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/common/topfd_para.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/common/topfd_para.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/common/topfd_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/common/topfd_para.cpp [ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/common/topfd_process.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/common/topfd_process.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/common/topfd_process.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/common/topfd_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/common/topfd_process.cpp [ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/activation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/activation.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/activation.cpp.o.d -o 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/deconv/deconv_one_sp.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/deconv/deconv_one_sp.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/deconv/deconv_one_sp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_one_sp.cpp [ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/activation_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_one_sp.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/amino_acid.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::DeconvOneSp::preprocess()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_one_sp.cpp:91:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/system/detail/requires_cxx11.hpp:9, from /usr/include/boost/system/detail/config.hpp:11, from /usr/include/boost/system/detail/error_category.hpp:13, from /usr/include/boost/system/detail/error_code.hpp:14, from /usr/include/boost/system/errc.hpp:14, from /usr/include/boost/system/system_error.hpp:9, from /usr/include/boost/thread/exceptions.hpp:22, from /usr/include/boost/thread/pthread/thread_data.hpp:10, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/common/topfd_process.cpp:24: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/amino_acid_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp [ 1%] Building CXX object CMakeFiles/topfd.dir/src/topfd/deconv/deconv_process.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/deconv/deconv_process.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/deconv/deconv_process.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/deconv/deconv_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.cpp [ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/base_data.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp [ 1%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_one_sp.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_one_sp.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_one_sp.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_one_sp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_one_sp.cpp [ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/ion.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp [ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/ion_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/ion_type.cpp.o.d -o 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Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_one_sp.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::DeconvOneSp::preprocess()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_one_sp.cpp:91:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/ion_type_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp [ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/mod.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_process.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_process.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/deconv/deconv_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.cpp [ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/mod_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp [ 1%] Building CXX object CMakeFiles/topindex.dir/src/common/base/mod_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.cpp:16: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::deconvMsOne(RawMsPtr, DeconvOneSpPtr, MatchEnvPtrVec, MsAlignWriterPtrVec, SimpleThreadPoolPtr, bool, std::string)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.cpp:296:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/system/detail/requires_cxx11.hpp:9, from /usr/include/boost/system/detail/config.hpp:11, from /usr/include/boost/system/detail/error_category.hpp:13, from /usr/include/boost/system/error_category.hpp:10, from /usr/include/boost/filesystem/detail/path_traits.hpp:25, from /usr/include/boost/filesystem/path.hpp:21, from /usr/include/boost/filesystem.hpp:16, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.cpp:17: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::DeconvProcess::processSp(toppic::RawMsGroupReaderPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.cpp:464:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::DeconvProcess::processSp(toppic::RawMsGroupReaderPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.cpp:526:31: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 1%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/co_table.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/dp/co_table.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/dp/co_table.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/dp/co_table.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/co_table.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:213:27: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object CMakeFiles/topindex.dir/src/common/base/neutral_loss.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp [ 2%] Building CXX object CMakeFiles/topindex.dir/src/common/base/neutral_loss_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/neutral_loss_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.cpp:16: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/dp.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/dp/dp.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/dp/dp.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/dp/dp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/dp.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::deconvMsOne(RawMsPtr, DeconvOneSpPtr, MatchEnvPtrVec, MsAlignWriterPtrVec, SimpleThreadPoolPtr, bool, std::string)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.cpp:296:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object CMakeFiles/topindex.dir/src/common/base/prot_mod.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/prot_mod.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/prot_mod.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/prot_mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod.cpp [ 2%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/dp_a.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/dp/dp_a.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/dp/dp_a.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/dp/dp_a.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/dp_a.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::DeconvProcess::processSp(toppic::RawMsGroupReaderPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.cpp:464:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::DeconvProcess::processSp(toppic::RawMsGroupReaderPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.cpp:526:31: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object CMakeFiles/topindex.dir/src/common/base/prot_mod_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/prot_mod_base.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/prot_mod_base.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/prot_mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp [ 2%] Building CXX object CMakeFiles/topindex.dir/src/common/base/prot_mod_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/dp/co_table.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/dp/co_table.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/dp/co_table.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/co_table.cpp [ 2%] Building CXX object CMakeFiles/topindex.dir/src/common/base/ptm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/dp/dp_b.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/dp/dp_b.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/dp/dp_b.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/dp_b.cpp [ 2%] Building CXX object CMakeFiles/topindex.dir/src/common/base/residue_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp [ 2%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/vertex_a.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/vertex_a.cpp [ 2%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/vertex_b.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/dp/vertex_b.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/dp/vertex_b.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/dp/vertex_b.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/vertex_b.cpp [ 2%] Building CXX object CMakeFiles/topindex.dir/src/common/base/residue_freq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp [ 2%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/vertex.cpp [ 2%] Building CXX object CMakeFiles/topindex.dir/src/common/base/residue_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/dp_para.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/vertex.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/vertex_b.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/vertex_b.cpp:16: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::VertexB::VertexB(toppic::DpParaPtr, int, int, int, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/vertex_b.cpp:31:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 3%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/vertex_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/dp/vertex_util.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/dp/vertex_util.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/dp/vertex_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/vertex_util.cpp [ 3%] Building CXX object CMakeFiles/topindex.dir/src/common/base/support_peak_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp [ 3%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex_a.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include 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CXX object CMakeFiles/topfd.dir/src/topfd/envcnn/env_cnn.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex_b.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex_b.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex_b.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/vertex_b.cpp [ 3%] Building CXX object CMakeFiles/topindex.dir/src/common/base/trunc_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::VertexB::VertexB(toppic::DpParaPtr, int, int, int, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/vertex_b.cpp:31:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 3%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/vertex_util.cpp [ 3%] Building CXX object CMakeFiles/topindex.dir/src/common/base/trunc_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topindex.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topindex.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp [ 4%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/envcnn/env_cnn.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/envcnn/env_cnn.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/envcnn/env_cnn.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/envcnn/env_cnn.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/envcnn/env_cnn.cpp [ 4%] Building CXX object CMakeFiles/topindex.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topindex.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topindex.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 4%] Building CXX object CMakeFiles/topindex.dir/src/common/util/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topindex.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topindex.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp [ 4%] Building CXX object CMakeFiles/topindex.dir/src/common/util/mem_check.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topindex.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topindex.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: /usr/include/c++/13/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 4%] Building CXX object CMakeFiles/topindex.dir/src/common/util/str_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topindex.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topindex.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp [ 4%] Building CXX object CMakeFiles/topindex.dir/src/common/util/time_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topindex.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topindex.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp [ 5%] Building CXX object CMakeFiles/topindex.dir/src/common/xml/xml_dom_document.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topindex.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topindex.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp [ 5%] Building CXX object CMakeFiles/topindex.dir/src/common/xml/xml_dom_impl.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topindex.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topindex.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp [ 5%] Building CXX object CMakeFiles/topindex.dir/src/common/xml/xml_dom_parser.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topindex.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp [ 5%] Building CXX object CMakeFiles/topindex.dir/src/seq/bp_spec.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/topindex.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/c++/13/queue:63, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/container_traits.hpp:17, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/container_common.hpp:10, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/fplus.hpp:11, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fdeep/common.hpp:31, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fdeep/fdeep.hpp:9, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/envcnn/env_cnn.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:17: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:20: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:58:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:62:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:72:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:81:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object CMakeFiles/topindex.dir/src/seq/break_point.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topindex.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp [ 5%] Building CXX object CMakeFiles/topindex.dir/src/seq/db_block.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topindex.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp [ 5%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::env_cnn::getExpIntervaledPeakData(const toppic::PeakPtrVec&, double, std::vector&, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/envcnn/env_cnn.cpp:50:28: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::env_cnn::getExpIntervaledPeakData(const toppic::PeakPtrVec&, double, std::vector&, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/envcnn/env_cnn.cpp:51:29: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::env_cnn::extractTheoPeakData(toppic::EnvelopePtr&, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/envcnn/env_cnn.cpp:108:24: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::env_cnn::extractTheoPeakData(toppic::EnvelopePtr&, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/envcnn/env_cnn.cpp:109:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp [ 5%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/c++/13/queue:63, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/container_traits.hpp:17, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/container_common.hpp:10, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/fplus.hpp:11, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fdeep/common.hpp:31, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fdeep/fdeep.hpp:9, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/envcnn/env_cnn.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_sub_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::env_cnn::getExpIntervaledPeakData(const toppic::PeakPtrVec&, double, std::vector&, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/envcnn/env_cnn.cpp:50:28: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::env_cnn::getExpIntervaledPeakData(const toppic::PeakPtrVec&, double, std::vector&, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/envcnn/env_cnn.cpp:51:29: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::env_cnn::extractTheoPeakData(toppic::EnvelopePtr&, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/envcnn/env_cnn.cpp:108:24: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::env_cnn::extractTheoPeakData(toppic::EnvelopePtr&, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/envcnn/env_cnn.cpp:109:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp [ 5%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/composition.hpp:16, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/compare.hpp:10, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/fplus.hpp:9: /usr/include/c++/13/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]': /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator' changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:63: /usr/include/c++/13/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]': /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 5%] Building CXX object CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 5%] Building CXX object CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp [ 5%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/composition.hpp:16, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/compare.hpp:10, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/fplus.hpp:9: /usr/include/c++/13/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]': /usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator' changed in GCC 7.1 2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:63: /usr/include/c++/13/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]': /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 5%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp In file included from /usr/include/c++/13/memory:69, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/composition.hpp:17: /usr/include/c++/13/bits/stl_uninitialized.h: In function '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _ForwardIterator = nlohmann::json_abi_v3_11_3::basic_json<>*]': /usr/include/c++/13/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _ForwardIterator = nlohmann::json_abi_v3_11_3::basic_json<>*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _ForwardIterator = nlohmann::json_abi_v3_11_3::basic_json<>*]' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _ForwardIterator = nlohmann::json_abi_v3_11_3::basic_json<>*; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>]' at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:606:31, inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = std::vector, std::allocator > >; _Args = {const std::vector, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector >, void>, std::allocator, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector >, void> > >&}; _Tp = std::vector, std::allocator > >]' at /usr/include/c++/13/bits/new_allocator.h:191:4, inlined from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = std::vector, std::allocator > >; _Args = {const std::vector, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector >, void>, std::allocator, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector >, void> > >&}; _Tp = std::vector, std::allocator > >]' at /usr/include/c++/13/bits/alloc_traits.h:538:17, inlined from 'static T* nlohmann::json_abi_v3_11_3::basic_json::create(Args&& ...) [with T = std::vector, std::allocator > >; Args = {const std::vector, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector >, void>, std::allocator, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector >, void> > >&}; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector; CustomBaseClass = void]' at /usr/include/nlohmann/json.hpp:388:35, inlined from 'nlohmann::json_abi_v3_11_3::basic_json::json_value::json_value(const nlohmann::json_abi_v3_11_3::basic_json::array_t&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector; CustomBaseClass = void]' at /usr/include/nlohmann/json.hpp:537:65, inlined from 'nlohmann::json_abi_v3_11_3::basic_json::basic_json(const nlohmann::json_abi_v3_11_3::basic_json&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector; CustomBaseClass = void]' at /usr/include/nlohmann/json.hpp:1162:17: /usr/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]', inlined from 'bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_callback_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]' at /usr/include/nlohmann/detail/input/json_sax.hpp:441:83: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _ForwardIterator = nlohmann::json_abi_v3_11_3::basic_json<>*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _ForwardIterator = nlohmann::json_abi_v3_11_3::basic_json<>*]' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _ForwardIterator = nlohmann::json_abi_v3_11_3::basic_json<>*; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>]' at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1622:35, inlined from 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/vector.tcc:238:44, inlined from 'void nlohmann::json_abi_v3_11_3::detail::from_json_array_impl(const BasicJsonType&, typename BasicJsonType::array_t&, priority_tag<3>) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]' at /usr/include/nlohmann/detail/conversions/from_json.hpp:196:9, inlined from 'decltype (((nlohmann::json_abi_v3_11_3::detail::from_json_array_impl(j, arr, (nlohmann::json_abi_v3_11_3::detail::priority_tag<3>)(())), j.get()), void())) nlohmann::json_abi_v3_11_3::detail::from_json(const BasicJsonType&, ConstructibleArrayType&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; ConstructibleArrayType = std::vector, std::allocator > >; typename std::enable_if<((((is_constructible_array_type::value && (! is_constructible_object_type::value)) && (! is_constructible_string_type::value)) && (! std::is_same::value)) && (! is_basic_json::value)), int>::type = 0]' at /usr/include/nlohmann/detail/conversions/from_json.hpp:273:25: /usr/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp In file included from /usr/include/c++/13/memory:69, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/composition.hpp:17: /usr/include/c++/13/bits/stl_uninitialized.h: In function '_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _ForwardIterator = nlohmann::json_abi_v3_11_3::basic_json<>*]': /usr/include/c++/13/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _ForwardIterator = nlohmann::json_abi_v3_11_3::basic_json<>*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _ForwardIterator = nlohmann::json_abi_v3_11_3::basic_json<>*]' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _ForwardIterator = nlohmann::json_abi_v3_11_3::basic_json<>*; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>]' at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:606:31, inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = std::vector, std::allocator > >; _Args = {const std::vector, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector >, void>, std::allocator, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector >, void> > >&}; _Tp = std::vector, std::allocator > >]' at /usr/include/c++/13/bits/new_allocator.h:191:4, inlined from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = std::vector, std::allocator > >; _Args = {const std::vector, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector >, void>, std::allocator, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector >, void> > >&}; _Tp = std::vector, std::allocator > >]' at /usr/include/c++/13/bits/alloc_traits.h:538:17, inlined from 'static T* nlohmann::json_abi_v3_11_3::basic_json::create(Args&& ...) [with T = std::vector, std::allocator > >; Args = {const std::vector, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector >, void>, std::allocator, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::json_abi_v3_11_3::adl_serializer, std::vector >, void> > >&}; ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector; CustomBaseClass = void]' at /usr/include/nlohmann/json.hpp:388:35, inlined from 'nlohmann::json_abi_v3_11_3::basic_json::json_value::json_value(const nlohmann::json_abi_v3_11_3::basic_json::array_t&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector; CustomBaseClass = void]' at /usr/include/nlohmann/json.hpp:537:65, inlined from 'nlohmann::json_abi_v3_11_3::basic_json::basic_json(const nlohmann::json_abi_v3_11_3::basic_json&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::json_abi_v3_11_3::adl_serializer; BinaryType = std::vector; CustomBaseClass = void]' at /usr/include/nlohmann/json.hpp:1162:17: /usr/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > >]', inlined from 'bool nlohmann::json_abi_v3_11_3::detail::json_sax_dom_callback_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]' at /usr/include/nlohmann/detail/input/json_sax.hpp:441:83: /usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, nlohmann::json_abi_v3_11_3::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_11_3::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_11_3::basic_json<> > > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 6%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp In static member function 'static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _ForwardIterator = nlohmann::json_abi_v3_11_3::basic_json<>*; bool _TrivialValueTypes = false]', inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _ForwardIterator = nlohmann::json_abi_v3_11_3::basic_json<>*]' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _ForwardIterator = nlohmann::json_abi_v3_11_3::basic_json<>*; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>]' at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from 'std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/stl_vector.h:1622:35, inlined from 'std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = nlohmann::json_abi_v3_11_3::basic_json<>; _Alloc = std::allocator >]' at /usr/include/c++/13/bits/vector.tcc:238:44, inlined from 'void nlohmann::json_abi_v3_11_3::detail::from_json_array_impl(const BasicJsonType&, typename BasicJsonType::array_t&, priority_tag<3>) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>]' at /usr/include/nlohmann/detail/conversions/from_json.hpp:196:9, inlined from 'decltype (((nlohmann::json_abi_v3_11_3::detail::from_json_array_impl(j, arr, (nlohmann::json_abi_v3_11_3::detail::priority_tag<3>)(())), j.get()), void())) nlohmann::json_abi_v3_11_3::detail::from_json(const BasicJsonType&, ConstructibleArrayType&) [with BasicJsonType = nlohmann::json_abi_v3_11_3::basic_json<>; ConstructibleArrayType = std::vector, std::allocator > >; typename std::enable_if<((((is_constructible_array_type::value && (! is_constructible_object_type::value)) && (! is_constructible_string_type::value)) && (! std::is_same::value)) && (! is_basic_json::value)), int>::type = 0]' at /usr/include/nlohmann/detail/conversions/from_json.hpp:273:25: /usr/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermAcets(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:201:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermShift(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:185:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::ResFreqPtrVec toppic::proteoform_util::compNTermResidueFreq(const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:43:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object CMakeFiles/topindex.dir/src/seq/residue_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topindex.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp [ 6%] Building CXX object CMakeFiles/topindex.dir/src/seq/seq_segment.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topindex.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topindex.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp [ 6%] Building CXX object CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_detect.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_detect.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_detect.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp [ 6%] Building CXX object CMakeFiles/topindex.dir/src/para/prsm_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topindex.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topindex.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp [ 6%] Building CXX object CMakeFiles/topindex.dir/src/para/sp_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topindex.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topindex.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp In file included from /usr/include/boost/typeof/detail/requires_cxx11.hpp:9, from /usr/include/boost/typeof/typeof.hpp:16, from /usr/include/boost/numeric/ublas/traits.hpp:29, from /usr/include/boost/numeric/ublas/storage.hpp:27, from /usr/include/boost/numeric/ublas/vector.hpp:21, from /usr/include/boost/numeric/ublas/matrix.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.hpp:27, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:37: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SpPara::SpPara(xercesc_3_2::DOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:47:27: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 6%] Building CXX object CMakeFiles/topindex.dir/src/filter/index/diag_index.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/topindex.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp [ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_detect.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_detect.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_detect.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.hpp:17, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:23: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::feature_detect::getMatchedPeaks(toppic::DeconvMsPtrVec&, double, toppic::DeconvPeakPtrVec&, int, int, toppic::FeatureParaPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:82:36: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::feature_detect::getMatchedPeaks(toppic::DeconvMsPtrVec&, double, toppic::DeconvPeakPtrVec&, int, int, toppic::FeatureParaPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:83:37: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'double toppic::feature_detect::getMaxInte(toppic::DeconvPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:270:19: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/typeof/detail/requires_cxx11.hpp:9, from /usr/include/boost/typeof/typeof.hpp:16, from /usr/include/boost/numeric/ublas/traits.hpp:29, from /usr/include/boost/numeric/ublas/storage.hpp:27, from /usr/include/boost/numeric/ublas/vector.hpp:21, from /usr/include/boost/numeric/ublas/matrix.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.hpp:27, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:37: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object CMakeFiles/topindex.dir/src/filter/index/one_ptm_index.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/topindex.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.hpp:17, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:23: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::feature_detect::getMatchedPeaks(toppic::DeconvMsPtrVec&, double, toppic::DeconvPeakPtrVec&, int, int, toppic::FeatureParaPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:82:36: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::feature_detect::getMatchedPeaks(toppic::DeconvMsPtrVec&, double, toppic::DeconvPeakPtrVec&, int, int, toppic::FeatureParaPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:83:37: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 6%] Building CXX object CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_para.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_para.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_para.cpp /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'double toppic::feature_detect::getMaxInte(toppic::DeconvPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:270:19: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_para.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_para.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'std::vector toppic::FeaturePara::getExtendMasses(double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_para.cpp:47:21: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'std::vector toppic::FeaturePara::getExtendMasses(double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_para.cpp:52:23: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'std::vector toppic::FeaturePara::getSearchMasses(double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_para.cpp:61:21: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'std::vector toppic::FeaturePara::getSearchMasses(double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_para.cpp:66:23: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 6%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/pw_ms_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/msreader/pw_ms_reader.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/msreader/pw_ms_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/msreader/pw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /usr/include/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /usr/include/pwizlite/pwiz/data/common/ParamTypes.hpp:29, from /usr/include/pwizlite/pwiz/data/msdata/MSData.hpp:30, from /usr/include/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp:29, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp:15: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_para.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_para.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_para.cpp [ 6%] Building CXX object CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_para.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_para.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'std::vector toppic::FeaturePara::getExtendMasses(double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_para.cpp:47:21: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'std::vector toppic::FeaturePara::getExtendMasses(double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_para.cpp:52:23: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'std::vector toppic::FeaturePara::getSearchMasses(double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_para.cpp:61:21: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'std::vector toppic::FeaturePara::getSearchMasses(double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_para.cpp:66:23: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/pw_ms_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/pw_ms_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/pw_ms_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/pw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp [ 6%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /usr/include/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /usr/include/pwizlite/pwiz/data/common/ParamTypes.hpp:29, from /usr/include/pwizlite/pwiz/data/msdata/MSData.hpp:30, from /usr/include/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp:29, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp:15: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.cpp:19: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_group_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.cpp [ 6%] Building CXX object CMakeFiles/topindex.dir/src/filter/massmatch/mass_match.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/massmatch/mass_match.cpp.o -MF CMakeFiles/topindex.dir/src/filter/massmatch/mass_match.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/massmatch/mass_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match.cpp [ 6%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_reader.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.cpp:19: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp:19: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp [ 6%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_writer.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_writer.cpp [ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::MassMatchPtr toppic::mass_match_factory::getMassMatchPtr(const toppic::ProteoformPtrVec&, std::vector >&, double, double, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:57:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp:19: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp [ 6%] Building CXX object CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/spec/deconv_data.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 6%] Building CXX object CMakeFiles/topfd.dir/src/topfd/spec/deconv_data_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/spec/deconv_data_util.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/spec/deconv_data_util.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/spec/deconv_data_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/spec/deconv_data_util.cpp In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::mass_match_util::addTruncShifts(toppic::ProtCandidatePtrVec&, toppic::MassMatchPtr, std::vector&, int, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:70:23: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_writer.cpp [ 6%] Building CXX object CMakeFiles/topindex.dir/src/filter/massmatch/prot_candidate.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/massmatch/prot_candidate.cpp.o -MF CMakeFiles/topindex.dir/src/filter/massmatch/prot_candidate.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/massmatch/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.cpp [ 6%] Building CXX object 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/topindex.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp [ 6%] Building CXX object CMakeFiles/topfd.dir/src/common/base/activation_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/activation_base.cpp.o -c 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp [ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/spec/deconv_data.cpp [ 6%] Building CXX object CMakeFiles/topfd.dir/src/common/base/amino_acid_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE 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CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/spec/deconv_data_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/spec/deconv_data_util.cpp [ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/activation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 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CMakeFiles/topfd_gui.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp [ 6%] Building CXX object CMakeFiles/topfd.dir/src/common/base/ion_type_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp [ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/amino_acid_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp [ 6%] Building CXX object CMakeFiles/topfd.dir/src/common/base/mod.cpp.o 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CMakeFiles/topfd.dir/src/common/base/mod.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod.cpp [ 6%] Building CXX object CMakeFiles/topindex.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/topindex.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/zero_ptm_filter_mng.cpp [ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/base_data.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp [ 6%] Building CXX object CMakeFiles/topfd.dir/src/common/base/mod_base.cpp.o /usr/bin/c++ 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CMakeFiles/topfd.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp [ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ion.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp [ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ion_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp [ 6%] Building CXX object CMakeFiles/topfd.dir/src/common/base/mod_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp [ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ion_type_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 [ 6%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/mod.cpp.o /usr/bin/c++ 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CMakeFiles/topfd_gui.dir/src/common/base/mod.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod.cpp /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:213:27: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp [ 8%] Building CXX object CMakeFiles/topfd.dir/src/common/base/neutral_loss_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/neutral_loss_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.cpp [ 8%] Building CXX object CMakeFiles/topindex_gui.dir/src/gui/topindex/threadtopindex.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object CMakeFiles/topfd.dir/src/common/base/prot_mod.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/prot_mod.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/prot_mod.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/prot_mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod.cpp [ 8%] Building CXX object CMakeFiles/topfd.dir/src/common/base/prot_mod_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/prot_mod_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/prot_mod_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/prot_mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:213:27: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 8%] Building CXX object CMakeFiles/topfd.dir/src/common/base/prot_mod_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/gui/topindex/topindex_gui.cpp.o -MF CMakeFiles/topindex_gui.dir/src/gui/topindex/topindex_gui.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/gui/topindex/topindex_gui.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindex_gui.cpp [ 8%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/neutral_loss_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/neutral_loss_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.cpp [ 8%] Building CXX object CMakeFiles/topfd.dir/src/common/base/ptm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui 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-c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp [ 9%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/prot_mod.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/prot_mod.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/prot_mod.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/prot_mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindex_gui.cpp: In function 'int main(int, char**)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindex_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 40 | QRect deskRect = desk->availableGeometry(); | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QDesktopWidget:1, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindex_gui.cpp:19: /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ [ 9%] Building CXX object CMakeFiles/topindex_gui.dir/src/gui/topindex/topindexdialog.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp [ 9%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/residue_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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-D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp [ 9%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/trunc.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui 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CMakeFiles/topfd_gui.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp [ 9%] Building CXX object CMakeFiles/topindex_gui.dir/src/console/topindex_process.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/console/topindex_process.cpp.o -MF CMakeFiles/topindex_gui.dir/src/console/topindex_process.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/console/topindex_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topindex_process.cpp [ 9%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/trunc_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp [ 9%] Building CXX object CMakeFiles/topfd.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/topfd.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp [ 9%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/thread/simple_thread_pool.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 9%] Building CXX object CMakeFiles/topfd.dir/src/common/util/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topfd.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topfd.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp [ 9%] Building CXX object CMakeFiles/topfd.dir/src/common/util/mem_check.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topfd.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topfd.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp [ 9%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: /usr/include/c++/13/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 9%] Building CXX object CMakeFiles/topfd.dir/src/common/util/str_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topfd.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topfd.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 9%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/activation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/activation.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation.cpp [ 9%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/activation_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp [ 9%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp [ 9%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp [ 9%] Building CXX object CMakeFiles/topfd.dir/src/common/util/time_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topfd.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topfd.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp [ 9%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/amino_acid.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp [ 10%] Building CXX object CMakeFiles/topfd.dir/src/common/xml/xml_dom_document.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topfd.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topfd.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: /usr/include/c++/13/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 10%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/str_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp [ 10%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/amino_acid_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp [ 10%] Building CXX object CMakeFiles/topfd.dir/src/common/xml/xml_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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CMakeFiles/topindex_gui.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp [ 10%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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CMakeFiles/topfd.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topfd.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topfd.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp [ 10%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_document.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp [ 11%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/mod_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topfd.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topfd.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp [ 11%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SpPara::SpPara(xercesc_3_2::DOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:47:27: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/charge_cmp.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp [ 11%] Building CXX object CMakeFiles/topfd_gui.dir/src/para/peak_tolerance.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topfd_gui.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp [ 11%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/mod_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'bool toppic::charge_cmp::isSecondBetter(const toppic::PeakPtrVec&, toppic::MatchEnvPtr, toppic::MatchEnvPtr, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:64:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_assign.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp [ 11%] Building CXX object CMakeFiles/topfd_gui.dir/src/para/prsm_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topfd_gui.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp [ 11%] Building CXX object CMakeFiles/topfd_gui.dir/src/para/sp_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topfd_gui.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp [ 11%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_detect.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SpPara::SpPara(xercesc_3_2::DOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:47:27: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/charge_cmp.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:213:27: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/neutral_loss.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'bool toppic::charge_cmp::isSecondBetter(const toppic::PeakPtrVec&, toppic::MatchEnvPtr, toppic::MatchEnvPtr, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:64:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp [ 11%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/neutral_loss_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/neutral_loss_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.cpp [ 11%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp [ 11%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/prot_mod.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/prot_mod.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/prot_mod.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/prot_mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod.cpp [ 11%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp [ 11%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp [ 11%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_base.cpp.o.d -o 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp [ 11%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp [ 11%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_rescore.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp [ 11%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 11%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp [ 12%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/ptm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/ptm.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/ptm.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.cpp [ 12%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp [ 12%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/ptm_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/ptm_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/ptm_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/ptm_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp [ 12%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::Envelope::getIntensities()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:266:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 12%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp [ 12%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_peak_pair.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp [ 12%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/ptm_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp [ 12%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_rescore.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp [ 12%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/residue.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/residue.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 12%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp [ 12%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env_refine.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp [ 12%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 12%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::Envelope::getIntensities()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:266:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 12%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp [ 12%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/residue_freq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp [ 12%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/match_env_filter.cpp.o -c 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-Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp [ 12%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env_refine.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp [ 12%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/topfd_gui.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp [ 13%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/prec_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp [ 14%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/prec_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp [ 14%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/extend_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp [ 14%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp [ 14%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 14%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp [ 14%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp [ 14%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/mem_check.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp [ 14%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: /usr/include/c++/13/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 14%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/str_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp [ 14%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp [ 14%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp [ 14%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_document.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp [ 14%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp [ 14%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp [ 15%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp [ 15%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/prm_peak_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp [ 15%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp [ 15%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp [ 15%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/alter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/alter.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp [ 15%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp [ 15%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/alter_type.cpp.o /usr/bin/c++ 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CMakeFiles/topindex_gui.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp [ 15%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/amino_acid_replace.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp [ 15%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/feature_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp [ 15%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:17: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:20: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:58:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:62:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:72:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:81:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/break_point.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp [ 15%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp [ 15%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/db_block.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp [ 15%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp [ 15%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp [ 15%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/fasta_index_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets 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CMakeFiles/topindex_gui.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp [ 15%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp [ 15%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp [ 15%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp [ 15%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/peak_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CMakeFiles/topfd_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/boost/math/special_functions/math_fwd.hpp:26, from /usr/include/boost/math/special_functions/gamma.hpp:25, from /usr/include/boost/math/distributions/poisson.hpp:40, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:217:21: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:218:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:219:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:220:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:223:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:224:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:225:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:226:40: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakCluster::PeakCluster(toppic::EnvelopePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:176:33: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/local_anno.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:247:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:248:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:269:25: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp [ 15%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/peak_cluster_score.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp [ 15%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/proteoform.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/boost/math/special_functions/math_fwd.hpp:26, from /usr/include/boost/math/special_functions/gamma.hpp:25, from /usr/include/boost/math/distributions/poisson.hpp:40, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:217:21: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:218:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:219:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:220:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:223:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:224:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:225:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:226:40: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::loadTable(std::string, std::vector >&, int, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:41:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakCluster::PeakCluster(toppic::EnvelopePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:176:33: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakClusterScore::PeakClusterScore(std::string&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:50:20: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/sample_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:247:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:248:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:269:25: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/sample_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp [ 15%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster_score.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp [ 15%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/sample_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp [ 15%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/savitzky_golay.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 15%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/proteoform_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::loadTable(std::string, std::vector >&, int, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:41:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakClusterScore::PeakClusterScore(std::string&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:50:20: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp [ 15%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/single_charge_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/single_charge_feature.cpp.o -MF 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-fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp [ 15%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp [ 16%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/spec_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp [ 16%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/savitzky_golay.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp [ 16%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/proteoform_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include 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Building CXX object CMakeFiles/topfd.dir/src/ms/feature/spec_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/single_charge_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp [ 16%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp [ 16%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp [ 17%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermAcets(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:201:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermShift(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:185:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::ResFreqPtrVec toppic::proteoform_util::compNTermResidueFreq(const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:43:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 17%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp [ 17%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp [ 17%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp [ 17%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/base_peak_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp [ 17%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/seq_segment.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp [ 18%] Building CXX object CMakeFiles/topindex_gui.dir/src/para/peak_tolerance.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topindex_gui.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp [ 18%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/baseline_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp [ 18%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp [ 18%] Building CXX object CMakeFiles/topindex_gui.dir/src/para/prsm_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topindex_gui.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp [ 18%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp [ 18%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_json_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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-I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp [ 18%] Building CXX object CMakeFiles/topindex_gui.dir/src/para/sp_para.cpp.o /usr/bin/c++ 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-I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SpPara::SpPara(xercesc_3_2::DOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:47:27: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 18%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/index/diag_index.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/topindex_gui.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp [ 18%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection 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CMakeFiles/topfd_gui.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp [ 18%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/extend_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp [ 18%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/raw_ms_group.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets 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CMakeFiles/topfd.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp [ 18%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp [ 18%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp [ 18%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp [ 18%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/simple_msalign_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp [ 18%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp [ 18%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/peak_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topfd_gui.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp [ 18%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/prm_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp [ 18%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_group.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp [ 18%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topfd.dir/src/ms/spec/raw_ms_group.cpp.o CMakeFiles/topfd.dir/src/ms/spec/raw_ms_util.cpp.o CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o CMakeFiles/topfd.dir/src/ms/spec/simple_msalign_reader.cpp.o CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topfd -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_thread -lboost_iostreams -lboost_chrono /usr/lib/arm-linux-gnueabihf/libpwizlite.so.3.0.5 -lpthread -lz [ 19%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 19%] Built target topfd make -f CMakeFiles/toppic.dir/build.make CMakeFiles/toppic.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/toppic.dir/DependInfo.cmake "--color=" Dependencies file "toppic_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/toppic.dir/compiler_depend.internal". 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/toppic_autogen/mocs_compilation.cpp.o -MF CMakeFiles/toppic.dir/toppic_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/toppic.dir/toppic_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/mocs_compilation.cpp [ 19%] Building CXX object CMakeFiles/toppic.dir/src/console/toppic.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include 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CMakeFiles/topfd_gui.dir/src/ms/spec/spectrum_set.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp [ 20%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/support_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp [ 20%] Building CXX object CMakeFiles/toppic.dir/src/console/toppic_argument.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/gui/util/run_exe.cpp.o -MF CMakeFiles/topfd_gui.dir/src/gui/util/run_exe.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/gui/util/run_exe.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/util/run_exe.cpp [ 20%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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Consolidate compiler generated dependencies of target toppic_gui make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/toppic_gui.dir/build.make CMakeFiles/toppic_gui.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 20%] Building CXX object CMakeFiles/toppic_gui.dir/toppic_gui_autogen/mocs_compilation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/toppic_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/toppic_gui.dir/toppic_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/toppic_gui.dir/toppic_gui_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/mocs_compilation.cpp [ 20%] Building CXX object CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o -MF CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o.d -o CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/toppic_process.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::MassMatchPtr toppic::mass_match_factory::getMassMatchPtr(const toppic::ProteoformPtrVec&, std::vector >&, double, double, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:57:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 20%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 20%] Building CXX object CMakeFiles/toppic_gui.dir/src/gui/toppic/threadtoppic.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/gui/toppic/threadtoppic.cpp.o -MF CMakeFiles/toppic_gui.dir/src/gui/toppic/threadtoppic.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/gui/toppic/threadtoppic.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/threadtoppic.cpp In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::mass_match_util::addTruncShifts(toppic::ProtCandidatePtrVec&, toppic::MassMatchPtr, std::vector&, int, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:70:23: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 20%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/massmatch/prot_candidate.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -MF CMakeFiles/topindex_gui.dir/src/filter/massmatch/prot_candidate.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.cpp [ 20%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/mng/diag_filter_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/topindex_gui.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp [ 20%] Building CXX object 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-DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/topindex_gui.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp [ 20%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -MF CMakeFiles/topindex_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/one_ptm_filter_mng.cpp [ 20%] Building CXX object CMakeFiles/toppic_gui.dir/src/gui/toppic/toppic_gui.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/gui/toppic/toppic_gui.cpp.o -MF CMakeFiles/toppic_gui.dir/src/gui/toppic/toppic_gui.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/gui/toppic/toppic_gui.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppic_gui.cpp [ 20%] Building CXX object CMakeFiles/toppic.dir/src/common/base/activation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/activation.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppic_gui.cpp: In function 'int main(int, char**)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppic_gui.cpp:36:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 36 | QRect deskRect = desk->availableGeometry(); | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QDesktopWidget:1, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppic_gui.cpp:18: /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ [ 20%] Building CXX object CMakeFiles/toppic.dir/src/common/base/activation_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp [ 20%] Building CXX object CMakeFiles/toppic_gui.dir/src/gui/toppic/toppicwindow.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/gui/toppic/toppicwindow.cpp.o -MF CMakeFiles/toppic_gui.dir/src/gui/toppic/toppicwindow.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/gui/toppic/toppicwindow.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.cpp [ 20%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp [ 20%] Building CXX object CMakeFiles/toppic.dir/src/common/base/base_data.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp [ 20%] Building CXX object CMakeFiles/topindex_gui.dir/src/gui/util/run_exe.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topindex_gui_autogen/include 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Consolidate compiler generated dependencies of target topmg make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topmg.dir/build.make CMakeFiles/topmg.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 20%] Building CXX object CMakeFiles/topmg.dir/topmg_autogen/mocs_compilation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/topmg_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topmg.dir/topmg_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topmg.dir/topmg_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/mocs_compilation.cpp [ 20%] Building CXX object CMakeFiles/topmg.dir/src/console/topmg.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/console/topmg.cpp.o -MF CMakeFiles/topmg.dir/src/console/topmg.cpp.o.d -o CMakeFiles/topmg.dir/src/console/topmg.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmg.cpp [ 20%] Building CXX object CMakeFiles/toppic_gui.dir/src/console/toppic_argument.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/console/toppic_argument.cpp.o -MF CMakeFiles/toppic_gui.dir/src/console/toppic_argument.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/console/toppic_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/toppic_argument.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 20%] Building CXX object CMakeFiles/topmg.dir/src/console/topmg_argument.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/console/topmg_argument.cpp.o -MF CMakeFiles/topmg.dir/src/console/topmg_argument.cpp.o.d -o CMakeFiles/topmg.dir/src/console/topmg_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmg_argument.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:213:27: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 21%] Building CXX object CMakeFiles/toppic.dir/src/common/base/neutral_loss.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/neutral_loss_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.cpp [ 21%] Building CXX object CMakeFiles/toppic.dir/src/common/base/prot_mod.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/prot_mod.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/prot_mod.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/prot_mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod.cpp [ 21%] Building CXX 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ion.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp [ 22%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ion_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp [ 22%] Building CXX object CMakeFiles/toppic.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp [ 22%] Building CXX object CMakeFiles/topmg.dir/src/common/base/amino_acid.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp [ 22%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp [ 22%] Building CXX object CMakeFiles/topmg.dir/src/common/base/amino_acid_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 22%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/mod.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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-O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp [ 23%] Building CXX object CMakeFiles/topmg.dir/src/common/base/base_data.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp [ 23%] Building CXX object CMakeFiles/toppic.dir/src/common/util/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/util/logger.cpp.o -MF CMakeFiles/toppic.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/toppic.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp [ 23%] Building CXX object CMakeFiles/toppic.dir/src/common/util/mem_check.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/toppic.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/toppic.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp [ 23%] Building CXX object CMakeFiles/topmg.dir/src/common/base/ion.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: /usr/include/c++/13/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp [ 23%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/mod_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp [ 23%] Building CXX object CMakeFiles/toppic.dir/src/common/util/str_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/toppic.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/toppic.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp [ 23%] Building CXX object CMakeFiles/topmg.dir/src/common/base/ion_type_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 23%] Building CXX object CMakeFiles/topmg.dir/src/common/base/mod.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/mod.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod.cpp [ 23%] Building CXX object CMakeFiles/topmg.dir/src/common/base/mod_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp [ 24%] Building CXX object CMakeFiles/toppic.dir/src/common/util/time_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/toppic.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/toppic.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:213:27: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 24%] Building CXX object CMakeFiles/toppic.dir/src/common/xml/xml_dom_document.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp [ 24%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.cpp [ 24%] Building CXX object CMakeFiles/topmg.dir/src/common/base/mod_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/toppic.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/toppic.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp [ 24%] Building CXX object CMakeFiles/toppic.dir/src/common/xml/xml_dom_impl.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/toppic.dir/src/common/xml/xml_dom_impl.cpp.o.d -o 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/toppic.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/toppic.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 24%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/toppic.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp [ 24%] Building CXX object CMakeFiles/toppic.dir/src/seq/alter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:213:27: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 24%] Building CXX object CMakeFiles/topmg.dir/src/common/base/neutral_loss.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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CMakeFiles/topmg.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/neutral_loss_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.cpp [ 24%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ptm_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/toppic.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp [ 24%] Building CXX object CMakeFiles/topmg.dir/src/common/base/prot_mod.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/prot_mod.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/prot_mod.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/prot_mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod.cpp [ 24%] Building CXX object CMakeFiles/toppic.dir/src/seq/bp_spec.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/toppic.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp [ 24%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ptm_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:17: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ [ 24%] Building CXX object CMakeFiles/topmg.dir/src/common/base/prot_mod_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/prot_mod_base.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/prot_mod_base.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/prot_mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:20: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:58:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:62:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:72:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:81:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 24%] Building CXX object CMakeFiles/toppic.dir/src/seq/break_point.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/break_point.cpp.o -MF CMakeFiles/toppic.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp [ 24%] Building CXX object CMakeFiles/toppic.dir/src/seq/db_block.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/db_block.cpp.o -MF CMakeFiles/toppic.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp [ 24%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/residue.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/residue.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/residue.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.cpp [ 24%] Building CXX object CMakeFiles/topmg.dir/src/common/base/prot_mod_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/prot_mod_util.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/prot_mod_util.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/prot_mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_util.cpp [ 24%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_index_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/ptm.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/ptm.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.cpp [ 24%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/residue_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp [ 24%] Building CXX object CMakeFiles/topmg.dir/src/common/base/ptm_base.cpp.o /usr/bin/c++ 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp [ 24%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp [ 24%] Building CXX object CMakeFiles/topmg.dir/src/common/base/ptm_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp [ 24%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/support_peak_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/toppic_gui.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp [ 24%] Building CXX object CMakeFiles/topmg.dir/src/common/base/residue.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/residue.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/residue.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.cpp [ 24%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp [ 24%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/support_peak_type_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp [ 24%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp [ 24%] Building CXX object CMakeFiles/topmg.dir/src/common/base/residue_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp [ 25%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/trunc.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp [ 25%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/trunc_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp [ 25%] Building CXX object CMakeFiles/topmg.dir/src/common/base/residue_freq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CMakeFiles/toppic_gui.dir/src/common/thread/simple_thread_pool.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp [ 25%] Building CXX object CMakeFiles/topmg.dir/src/common/base/support_peak_type_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object CMakeFiles/toppic.dir/src/seq/mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/toppic.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp [ 25%] Building CXX object CMakeFiles/topmg.dir/src/common/base/trunc.cpp.o /usr/bin/c++ 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-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp [ 26%] Building CXX object CMakeFiles/topmg.dir/src/common/base/trunc_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp [ 26%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp [ 26%] Building CXX object CMakeFiles/topmg.dir/src/common/base/trunc_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp [ 26%] Building CXX object CMakeFiles/topmg.dir/src/common/thread/simple_thread_pool.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topmg.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topmg.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 26%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp [ 26%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp [ 26%] Building CXX object CMakeFiles/toppic.dir/src/seq/proteoform_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/toppic.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: /usr/include/c++/13/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 26%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/str_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp [ 26%] Building CXX object CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 26%] Building CXX object CMakeFiles/topmg.dir/src/common/util/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topmg.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topmg.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp [ 26%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp [ 26%] Building CXX object CMakeFiles/topmg.dir/src/common/util/mem_check.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp [ 27%] Building CXX object CMakeFiles/toppic.dir/src/seq/proteoform_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/toppic.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: /usr/include/c++/13/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp [ 27%] Building CXX object CMakeFiles/toppic.dir/src/seq/proteoform_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/toppic.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp [ 27%] Building CXX object CMakeFiles/topmg.dir/src/common/util/str_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topmg.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topmg.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp [ 27%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_impl.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp [ 27%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_parser.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp [ 27%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp [ 27%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermAcets(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:201:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/alter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/alter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/alter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermShift(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:185:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object CMakeFiles/topmg.dir/src/common/util/time_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topmg.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topmg.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::ResFreqPtrVec toppic::proteoform_util::compNTermResidueFreq(const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:43:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_dom_document.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topmg.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topmg.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp [ 27%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/alter_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp [ 27%] Building CXX object CMakeFiles/toppic.dir/src/seq/residue_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/toppic.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp [ 27%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_dom_err_handler.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topmg.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topmg.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp [ 27%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_dom_impl.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp [ 27%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_dom_parser.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topmg.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topmg.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp [ 27%] Building CXX object 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/toppic.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/toppic.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp [ 27%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_dom_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topmg.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topmg.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp [ 27%] Building CXX object CMakeFiles/toppic.dir/src/para/prsm_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/toppic.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/toppic.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:17: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 [ 27%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topmg.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:20: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:58:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:62:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:72:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:81:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/break_point.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/break_point.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp [ 27%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/db_block.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/db_block.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp [ 27%] Building CXX object CMakeFiles/topmg.dir/src/seq/alter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/alter.cpp.o -MF CMakeFiles/topmg.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp [ 27%] Building CXX object CMakeFiles/toppic.dir/src/para/sp_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/para/sp_para.cpp.o -MF CMakeFiles/toppic.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/toppic.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp [ 27%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp [ 27%] Building CXX object CMakeFiles/topmg.dir/src/seq/alter_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/topmg.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SpPara::SpPara(xercesc_3_2::DOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:47:27: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 28%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp [ 28%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/charge_cmp.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp [ 28%] Building CXX object CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'bool toppic::charge_cmp::isSecondBetter(const toppic::PeakPtrVec&, toppic::MatchEnvPtr, toppic::MatchEnvPtr, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:64:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object CMakeFiles/topmg.dir/src/seq/bp_spec.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topmg.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp [ 28%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_assign.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp [ 28%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:17: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:20: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:58:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:62:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:72:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:81:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp [ 28%] Building CXX object CMakeFiles/topmg.dir/src/seq/break_point.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topmg.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp [ 28%] Building CXX object CMakeFiles/topmg.dir/src/seq/db_block.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topmg.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp [ 28%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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-MF CMakeFiles/topmg.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp [ 28%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp [ 28%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_detect.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp [ 28%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp [ 28%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp [ 28%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp [ 29%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/toppic.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp [ 29%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/local_anno.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp [ 29%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_peak_pair.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp [ 29%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_rescore.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp [ 29%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp [ 29%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp [ 29%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::Envelope::getIntensities()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:266:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp [ 29%] Building CXX object CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp [ 29%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 29%] Building CXX object CMakeFiles/topmg.dir/src/seq/mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmg.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp [ 29%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env_refine.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/match_env_refine.cpp.o 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-Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topmg.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp [ 29%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/proteoform_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp [ 29%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp [ 29%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp [ 29%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/proteoform_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp [ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/real_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermAcets(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:201:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermShift(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:185:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/extend_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/toppic.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::ResFreqPtrVec toppic::proteoform_util::compNTermResidueFreq(const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:43:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 30%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include 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CMakeFiles/toppic_gui.dir/src/seq/residue_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp [ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/seq_segment.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/seq_segment.cpp.o 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-Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/toppic_gui.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/prm_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/toppic.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp [ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/para/prsm_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/toppic_gui.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermAcets(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:201:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermShift(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:185:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::ResFreqPtrVec toppic::proteoform_util::compNTermResidueFreq(const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:43:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/para/sp_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/para/sp_para.cpp.o -MF CMakeFiles/toppic_gui.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp [ 30%] Building CXX object CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SpPara::SpPara(xercesc_3_2::DOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:47:27: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/charge_cmp.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp [ 30%] Building CXX object CMakeFiles/topmg.dir/src/seq/seq_segment.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topmg.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'bool toppic::charge_cmp::isSecondBetter(const toppic::PeakPtrVec&, toppic::MatchEnvPtr, toppic::MatchEnvPtr, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:64:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 30%] Building CXX object CMakeFiles/topmg.dir/src/para/peak_tolerance.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topmg.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topmg.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp [ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_assign.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp [ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/prm_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp [ 30%] Building CXX object CMakeFiles/topmg.dir/src/para/prsm_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp [ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp [ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/prm_peak_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/toppic.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp [ 30%] Building CXX object CMakeFiles/topmg.dir/src/para/sp_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topmg.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topmg.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp [ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_detect.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp [ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/spectrum_set_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/toppic.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SpPara::SpPara(xercesc_3_2::DOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:47:27: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 30%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/charge_cmp.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp [ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'bool toppic::charge_cmp::isSecondBetter(const toppic::PeakPtrVec&, toppic::MatchEnvPtr, toppic::MatchEnvPtr, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:64:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 30%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_assign.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp [ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/feature_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp [ 30%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp [ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp [ 31%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp [ 31%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_rescore.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp [ 31%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_detect.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp [ 31%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 31%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp [ 31%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp [ 31%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_feature_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 31%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::Envelope::getIntensities()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:266:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 31%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/match_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp [ 31%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_peak_pair.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp [ 31%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp [ 32%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_rescore.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp [ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/match_env_refine.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp [ 32%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp [ 32%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_xml_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp [ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/match_env_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::Envelope::getIntensities()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:266:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp [ 32%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/peak_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp [ 32%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp [ 32%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env_refine.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp [ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/match_env_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp [ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/prec_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp [ 32%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/boost/math/special_functions/math_fwd.hpp:26, from /usr/include/boost/math/special_functions/gamma.hpp:25, from /usr/include/boost/math/distributions/poisson.hpp:40, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:217:21: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:218:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:219:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:220:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:223:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:224:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:225:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:226:40: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakCluster::PeakCluster(toppic::EnvelopePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:176:33: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/real_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:247:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:248:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:269:25: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp [ 32%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp [ 32%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/peak_cluster_score.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp [ 32%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/prec_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp [ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::loadTable(std::string, std::vector >&, int, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:41:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakClusterScore::PeakClusterScore(std::string&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:50:20: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/sample_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/prm_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp [ 32%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/real_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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-g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp [ 32%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/extend_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp [ 32%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/sample_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp [ 32%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp [ 32%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/extend_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/extend_ms_util.cpp.o.d -o 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 32%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/prm_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp [ 32%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/single_charge_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp [ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/prm_peak_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp [ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp [ 32%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/spec_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui 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-Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp [ 33%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/prm_peak_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp [ 33%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp [ 33%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/deconv_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp [ 33%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/feature_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp [ 33%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/extend_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp [ 33%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp [ 33%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/ms_header.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp [ 33%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp [ 33%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/frac_feature_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui 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-fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp [ 34%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp [ 34%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/frac_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp [ 34%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/msalign_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp [ 34%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/msalign_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp [ 34%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/frac_xml_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp [ 34%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/peak_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp [ 34%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/prm_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/boost/math/special_functions/math_fwd.hpp:26, from /usr/include/boost/math/special_functions/gamma.hpp:25, from /usr/include/boost/math/distributions/poisson.hpp:40, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:217:21: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:218:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:219:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:220:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:223:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:224:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:225:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:226:40: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakCluster::PeakCluster(toppic::EnvelopePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:176:33: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 34%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/peak_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp [ 34%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/raw_ms_group.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp [ 34%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/raw_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:247:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:248:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:269:25: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 34%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp [ 34%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp [ 34%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/simple_msalign_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::loadTable(std::string, std::vector >&, int, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:41:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /usr/include/boost/math/special_functions/math_fwd.hpp:26, from /usr/include/boost/math/special_functions/gamma.hpp:25, from /usr/include/boost/math/distributions/poisson.hpp:40, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakClusterScore::PeakClusterScore(std::string&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:50:20: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:217:21: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:218:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:219:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:220:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:223:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:224:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:225:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:226:40: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakCluster::PeakCluster(toppic::EnvelopePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:176:33: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 34%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp [ 34%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/spectrum_set.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp [ 34%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:247:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:248:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:269:25: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 34%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/support_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp [ 35%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/theo_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp [ 35%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp [ 35%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/peak_cluster_score.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp [ 35%] Building CXX object CMakeFiles/toppic.dir/src/prsm/peak_ion_pair.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp [ 35%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/savitzky_golay.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::loadTable(std::string, std::vector >&, int, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:41:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakClusterScore::PeakClusterScore(std::string&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:50:20: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 36%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/sample_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/sample_feature.cpp.o.d -o 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp [ 36%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/single_charge_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp [ 36%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/sample_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp [ 36%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp [ 36%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/sample_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp [ 36%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp [ 36%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/savitzky_golay.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp [ 36%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp [ 36%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/base_peak_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp [ 36%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/baseline_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp [ 36%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/single_charge_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp [ 36%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp [ 36%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/spec_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp [ 36%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_json_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:61:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:81:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:83:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:94:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:115:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:117:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 36%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp [ 36%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/spec_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp [ 36%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/spec_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp [ 36%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp [ 36%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/env_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp [ 36%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/env_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp [ 36%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/extend_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp [ 36%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/ms_header.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include 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CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp [ 36%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/msalign_frac_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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-fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp [ 37%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/peak_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 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CMakeFiles/toppic_gui.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp [ 37%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/msalign_thread_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp [ 37%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_group.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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-I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp [ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/support_peak.cpp.o /usr/bin/c++ 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CMakeFiles/toppic_gui.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp [ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/theo_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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CMakeFiles/toppic_gui.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp [ 38%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp [ 38%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/simple_msalign_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp [ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp [ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp [ 38%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp [ 38%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/spectrum_set.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp [ 38%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/theo_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp [ 38%] Building CXX object CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp [ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp [ 38%] Building CXX object CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp [ 38%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp [ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_algo.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp [ 38%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:61:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:81:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:83:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:94:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:115:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:117:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp [ 38%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD 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-Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp [ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp [ 38%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_sample_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp [ 38%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:61:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:81:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:83:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:94:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:115:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:117:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 38%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include 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CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp [ 38%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CMakeFiles/toppic_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp [ 38%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_dia_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp [ 38%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp [ 38%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 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CMakeFiles/toppic_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp [ 38%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp [ 39%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp [ 39%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp [ 40%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp [ 40%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp [ 40%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp [ 40%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp [ 40%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp [ 40%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp [ 40%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp [ 41%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp [ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:16: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::SimplePrsm::setCTruncShifts(const std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:160:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:70:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:79:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp [ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp [ 41%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp [ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp [ 41%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp [ 41%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp [ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_table_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp [ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui 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CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp [ 41%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp [ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_top_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp [ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_table_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::theo_peak_util::getTheoMassVec(const toppic::TheoPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:30:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp [ 41%] Building CXX object CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp [ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp [ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp [ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp [ 41%] Building CXX object CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp [ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp [ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o 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CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp [ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp [ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:16: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::SimplePrsm::setCTruncShifts(const std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:160:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:70:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:79:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp [ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp [ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp [ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str.cpp.o.d 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp [ 41%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp [ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:16: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::SimplePrsm::setCTruncShifts(const std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:160:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:70:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:79:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp [ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp [ 41%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp [ 42%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::theo_peak_util::getTheoMassVec(const toppic::TheoPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:30:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp [ 44%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::theo_peak_util::getTheoMassVec(const toppic::TheoPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:30:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::MassMatchPtr toppic::mass_match_factory::getMassMatchPtr(const toppic::ProteoformPtrVec&, std::vector >&, double, double, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:57:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::mass_match_util::addTruncShifts(toppic::ProtCandidatePtrVec&, toppic::MassMatchPtr, std::vector&, int, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:70:23: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/prot_candidate.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/index/diag_index.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp [ 44%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/one_ptm_filter_mng.cpp [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/index/one_ptm_index.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp [ 44%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/zero_ptm_filter_mng.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection 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-I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp [ 44%] Building CXX object CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match.cpp [ 44%] Building CXX object CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::MassMatchPtr toppic::mass_match_factory::getMassMatchPtr(const toppic::ProteoformPtrVec&, std::vector >&, double, double, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:57:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::mass_match_util::addTruncShifts(toppic::ProtCandidatePtrVec&, toppic::MassMatchPtr, std::vector&, int, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:70:23: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp [ 44%] Building CXX object CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::MassMatchPtr toppic::mass_match_factory::getMassMatchPtr(const toppic::ProteoformPtrVec&, std::vector >&, double, double, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:57:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/one_ptm_filter_mng.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::mass_match_util::addTruncShifts(toppic::ProtCandidatePtrVec&, toppic::MassMatchPtr, std::vector&, int, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:70:23: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/prot_candidate.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/prot_candidate.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/prot_candidate.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp [ 44%] Building CXX object 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/zero_ptm_filter_mng.cpp [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter.cpp [ 44%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter.cpp [ 44%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp [ 44%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::DiagPairPtrVec toppic::diag_pair_util::compDiagPair(const toppic::PrmPeakPtrVec&, int, const std::vector&, toppic::DiagHeaderPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:42:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp [ 44%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::DpPair::DpPair(int, int, double, double, int, int, toppic::DiagHeaderPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp:30:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_search_processor.cpp [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp [ 44%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::OnePtmSlowMatch::addComplementDiagonals(toppic::DiagHeaderPtrVec&, toppic::DiagHeaderPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp:57:34: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::OnePtmSlowMatch::addComplementDiagonals(toppic::DiagHeaderPtrVec&, toppic::DiagHeaderPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp:79:34: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/path_type.cpp [ 44%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp [ 44%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::PsAlign::backtrace()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp:257:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ptm_search_mng.cpp [ 44%] Building CXX object CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp [ 45%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::CompShiftLowMem::findBestShift(const std::vector >&, const std::vector&, int, int, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.cpp:40:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 45%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_processor.cpp [ 45%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/diag/diag_header.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp [ 46%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp [ 46%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/diag/diag_pair_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::DiagPairPtrVec toppic::diag_pair_util::compDiagPair(const toppic::PrmPeakPtrVec&, int, const std::vector&, toppic::DiagHeaderPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:42:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp [ 46%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/diag/diagonal_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/diag/diagonal_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp [ 46%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_slow_filter.cpp [ 46%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp [ 46%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::DiagPairPtrVec toppic::diag_pair_util::compDiagPair(const toppic::PrmPeakPtrVec&, int, const std::vector&, toppic::DiagHeaderPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:42:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::DpPair::DpPair(int, int, double, double, int, int, toppic::DiagHeaderPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp:30:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp [ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_search_processor.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::PtmSlowMatch::addSuffixDiagonals(toppic::DiagHeaderPtrVec&, toppic::DiagHeaderPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp:101:34: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::PtmSlowMatch::addPrefixDiagonals(toppic::DiagHeaderPtrVec&, toppic::DiagHeaderPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp:74:34: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_match.cpp [ 47%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_search.cpp [ 47%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/dist.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/dist.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/dist.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/dist.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/dist.cpp [ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp [ 47%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_search_processor.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::OnePtmSlowMatch::addComplementDiagonals(toppic::DiagHeaderPtrVec&, toppic::DiagHeaderPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp:57:34: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::OnePtmSlowMatch::addComplementDiagonals(toppic::DiagHeaderPtrVec&, toppic::DiagHeaderPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp:79:34: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/path_type.cpp [ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp [ 47%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_anno.cpp [ 47%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::PsAlign::backtrace()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp:257:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp [ 47%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ptm_search_mng.cpp [ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.cpp [ 47%] Building CXX object CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::count_util::updateNTermResidueCounts(toppic::ResiduePtrVec&, std::vector&, const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:66:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::CompShiftLowMem::findBestShift(const std::vector >&, const std::vector&, int, int, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.cpp:40:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_processor.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::CompProbValue::compPrecProbs()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:274:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::CompProbValue::compPrecProbs()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:284:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::CompProbValue::compPrecProbs()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:293:26: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph_reader.cpp /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::CompProbValue::CompProbValue(double, const toppic::ResFreqPtrVec&, double, int, int, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:32:35: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::CompProbValue::setFactors()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:63:21, inlined from 'toppic::CompProbValue::CompProbValue(double, const toppic::ResFreqPtrVec&, double, int, int, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:45:13: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::CompProbValue::setFactors()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:65:21, inlined from 'toppic::CompProbValue::CompProbValue(double, const toppic::ResFreqPtrVec&, double, int, int, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:45:13: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::CompProbValue::setFactors()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:69:23, inlined from 'toppic::CompProbValue::CompProbValue(double, const toppic::ResFreqPtrVec&, double, int, int, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:45:13: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::CompProbValue::compute(const toppic::ResFreqPtrVec&, const toppic::PrmPeakPtrVec2D&, int, int, bool, double, toppic::PeakTolerancePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:114:39: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::comp_prob_value_array::compProbArray(toppic::CompProbValuePtr, const toppic::ResFreqPtrVec&, const toppic::PrmPeakPtrVec2D&, const toppic::PrsmPtrVec&, bool, double, toppic::PeakTolerancePtr, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.cpp:57:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_array.cpp [ 47%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_lookup_table.cpp [ 47%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph.cpp [ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_slow_filter.cpp [ 47%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/evalue_processor.cpp [ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_slow_match.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_slow_match.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp [ 47%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::PtmSlowMatch::addSuffixDiagonals(toppic::DiagHeaderPtrVec&, toppic::DiagHeaderPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp:101:34: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::PtmSlowMatch::addPrefixDiagonals(toppic::DiagHeaderPtrVec&, toppic::DiagHeaderPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp:74:34: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_match.cpp [ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_search.cpp [ 47%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/prob_peak.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:16: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/tdgf_mng.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::SpecGraphPtrVec toppic::SpecGraphReader::getNextSpecGraphPtrVec(toppic::SpectrumSetPtr, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:71:24: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::SpecGraphPtrVec toppic::SpecGraphReader::getNextSpecGraphPtrVec(toppic::SpectrumSetPtr, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:73:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::SpecGraphPtrVec toppic::SpecGraphReader::getNextSpecGraphPtrVec(toppic::SpectrumSetPtr, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:74:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_mng.cpp [ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_search_processor.cpp [ 47%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align.cpp [ 47%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:23: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::ProteoformPtr toppic::LocalProcessor::twoPtmLocalize(toppic::ProteoformPtr, const toppic::ExtendMsPtrVec&, int, toppic::PtmPtr, toppic::PtmPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:556:27: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::ProteoformPtr toppic::LocalProcessor::onePtmLocalize(toppic::ProteoformPtr, const toppic::ExtendMsPtrVec&, double, int, toppic::PtmPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:319:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::ProteoformPtr toppic::LocalProcessor::onePtmLocalize(toppic::ProteoformPtr, const toppic::ExtendMsPtrVec&, double, int, toppic::PtmPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:322:24: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_util.cpp [ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/count/count_test_num.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/count/count_test_num.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp [ 47%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_proteoform.cpp [ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/count/count_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::count_util::updateNTermResidueCounts(toppic::ResiduePtrVec&, std::vector&, const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:66:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp [ 47%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align_processor.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::CompProbValue::compPrecProbs()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:274:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::CompProbValue::compPrecProbs()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:284:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::CompProbValue::compPrecProbs()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:293:26: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::CompProbValue::CompProbValue(double, const toppic::ResFreqPtrVec&, double, int, int, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:32:35: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::CompProbValue::setFactors()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:63:21, inlined from 'toppic::CompProbValue::CompProbValue(double, const toppic::ResFreqPtrVec&, double, int, int, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:45:13: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::CompProbValue::setFactors()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:65:21, inlined from 'toppic::CompProbValue::CompProbValue(double, const toppic::ResFreqPtrVec&, double, int, int, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:45:13: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::CompProbValue::setFactors()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:69:23, inlined from 'toppic::CompProbValue::CompProbValue(double, const toppic::ResFreqPtrVec&, double, int, int, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:45:13: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::CompProbValue::compute(const toppic::ResFreqPtrVec&, const toppic::PrmPeakPtrVec2D&, int, int, bool, double, toppic::PeakTolerancePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:114:39: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value_array.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value_array.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.cpp [ 47%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::comp_prob_value_array::compProbArray(toppic::CompProbValuePtr, const toppic::ResFreqPtrVec&, const toppic::PrmPeakPtrVec2D&, const toppic::PrsmPtrVec&, bool, double, toppic::PeakTolerancePtr, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.cpp:57:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_array.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_array.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_array.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:21: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::local_util::compMTable(const std::vector&, double, const std::vector&, toppic::PeakTolerancePtr, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:107:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 47%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp [ 48%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_lookup_table.cpp [ 49%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp [ 49%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp [ 49%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/evalue_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/evalue_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/evalue_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/evalue_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/evalue_processor.cpp [ 49%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp [ 49%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/toppic_gui.dir/src/stat/tdgf/prob_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/prob_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/prob_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/prob_peak.cpp [ 49%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm_position.cpp [ 49%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/local/local_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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CMakeFiles/toppic_gui.dir/src/stat/local/local_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/local/local_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/local/local_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp [ 49%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_xml_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_xml_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp [ 49%] Building CXX object CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:23: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::ProteoformPtr toppic::LocalProcessor::twoPtmLocalize(toppic::ProteoformPtr, const toppic::ExtendMsPtrVec&, int, toppic::PtmPtr, toppic::PtmPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:556:27: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::ProteoformPtr toppic::LocalProcessor::onePtmLocalize(toppic::ProteoformPtr, const toppic::ExtendMsPtrVec&, double, int, toppic::PtmPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:319:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::ProteoformPtr toppic::LocalProcessor::onePtmLocalize(toppic::ProteoformPtr, const toppic::ExtendMsPtrVec&, double, int, toppic::PtmPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:322:24: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/json_transformer.cpp [ 49%] Building CXX object CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::count_util::updateNTermResidueCounts(toppic::ResiduePtrVec&, std::vector&, const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:66:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp: In member function 'toppic::ResiduePtrVec toppic::CompPValueMCMC::randomTrans(toppic::ResiduePtrVec)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:77:22: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 77 | std::random_shuffle(ori_res.begin(), ori_res.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:17: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:86:24: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 86 | std::random_shuffle(res_seq.begin(), res_seq.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/local/local_proteoform.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/local/local_proteoform.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/local/local_proteoform.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/local/local_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_proteoform.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o -MF CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:47:28: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:50:28: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:53:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:53:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:55:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:55:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_dpr_processor.cpp [ 49%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/local/local_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/local/local_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:21: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::local_util::compMTable(const std::vector&, double, const std::vector&, toppic::PeakTolerancePtr, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:107:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_cleavage.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp [ 49%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets 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CMakeFiles/topmg_gui.dir/src/gui/topmg/threadtopmg.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/threadtopmg.cpp [ 49%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp [ 49%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm.cpp [ 49%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_ptm_position.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_ptm_position.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_ptm_position.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm_position.cpp [ 49%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_residue.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_residue.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_residue.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp [ 49%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_xml_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_xml_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmg_gui.cpp: In function 'int main(int, char**)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmg_gui.cpp:36:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 36 | QRect deskRect = desk->availableGeometry(); | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QDesktopWidget:1, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmg_gui.cpp:18: /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ [ 49%] Building CXX object CMakeFiles/topmg_gui.dir/src/gui/topmg/topmgwindow.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/gui/topmg/topmgwindow.cpp.o -MF CMakeFiles/topmg_gui.dir/src/gui/topmg/topmgwindow.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/gui/topmg/topmgwindow.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.cpp [ 49%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp [ 49%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/json_transformer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/json_transformer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/json_transformer.cpp [ 49%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm.cpp [ 50%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm_position.cpp [ 50%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp [ 50%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/xml_generator.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp [ 50%] Building CXX object CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topmg -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_serialization -lboost_thread -lpthread -lz -lhts [ 50%] Building CXX object CMakeFiles/topdiff.dir/src/console/topdiff_argument.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/console/topdiff_argument.cpp.o -MF CMakeFiles/topdiff.dir/src/console/topdiff_argument.cpp.o.d -o CMakeFiles/topdiff.dir/src/console/topdiff_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topdiff_argument.cpp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 50%] Built target topmg make -f CMakeFiles/topdiff_gui.dir/build.make CMakeFiles/topdiff_gui.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 50%] Automatic RCC for src/gui/topdiff/icon.qrc /usr/bin/cmake -E cmake_autorcc /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/CMakeFiles/topdiff_gui_autogen.dir/AutoRcc_icon_4YKSSMFELI_Info.json release AutoRcc: Generating "SRC:/obj-arm-linux-gnueabihf/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/icon.qrc" /usr/lib/qt5/bin/rcc -name icon -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/icon.qrc AutoRcc: Writing settings file 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Consolidate compiler generated dependencies of target topdiff_gui make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' make -f CMakeFiles/topdiff_gui.dir/build.make CMakeFiles/topdiff_gui.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' [ 50%] Building CXX object CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/mocs_compilation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/mocs_compilation.cpp [ 50%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/topdiff/threadtopdiff.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topdiff_gui.dir/src/gui/topdiff/threadtopdiff.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/threadtopdiff.cpp [ 50%] Building CXX object CMakeFiles/topdiff.dir/src/console/topdiff_process.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/console/topdiff_process.cpp.o -MF CMakeFiles/topdiff.dir/src/console/topdiff_process.cpp.o.d -o CMakeFiles/topdiff.dir/src/console/topdiff_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topdiff_process.cpp [ 50%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp: In function 'int main(int, char**)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 40 | QRect deskRect = desk->availableGeometry(); | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QDesktopWidget:1, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp:19: /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ [ 50%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiffdialog.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp [ 52%] Building CXX object CMakeFiles/topdiff_gui.dir/src/console/topdiff_process.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/console/topdiff_process.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/console/topdiff_process.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/console/topdiff_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topdiff_process.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:213:27: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:213:27: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 52%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp [ 52%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/neutral_loss.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp [ 52%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/activation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp [ 52%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/prot_mod.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/prot_mod_base.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/prot_mod_base.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/prot_mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp [ 52%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/amino_acid_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp [ 53%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/support_peak_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp [ 53%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp [ 53%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/support_peak_type_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:213:27: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 53%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp [ 54%] Building CXX object 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CMakeFiles/topdiff_gui.dir/src/common/base/ptm_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp [ 55%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp [ 55%] Building CXX object CMakeFiles/topdiff.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topdiff.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 55%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/ptm_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/topdiff_gui.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp [ 55%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/residue.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/residue.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/residue.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.cpp [ 55%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp [ 55%] Building CXX object CMakeFiles/topdiff.dir/src/common/util/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topdiff.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp [ 55%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp [ 55%] Building CXX object CMakeFiles/topdiff.dir/src/common/util/mem_check.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topdiff.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp [ 55%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/residue_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: /usr/include/c++/13/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: /usr/include/c++/13/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topdiff.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp [ 55%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/residue_freq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp [ 55%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/residue_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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CMakeFiles/topdiff.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topdiff.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp [ 55%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_parser.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp [ 56%] Building CXX object 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-DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp [ 56%] Building CXX object CMakeFiles/topdiff.dir/src/seq/alter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/alter.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp [ 56%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/alter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/alter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp [ 56%] Building CXX object CMakeFiles/topdiff.dir/src/seq/alter_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/alter_type.cpp.o -MF 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp [ 56%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/amino_acid_replace.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp [ 56%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp [ 56%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:17: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:17: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:20: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:58:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:62:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:20: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:72:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:81:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:58:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:62:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:72:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:81:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 56%] Building CXX object CMakeFiles/topdiff.dir/src/seq/break_point.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp [ 56%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 56%] Building CXX object CMakeFiles/topdiff.dir/src/seq/db_block.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp [ 56%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_index_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp [ 56%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp [ 56%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/mem_check.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp [ 57%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp [ 57%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: /usr/include/c++/13/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/str_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp [ 57%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp [ 57%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp [ 58%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp [ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/time_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_document.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp [ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_impl.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp [ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_parser.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp [ 58%] Building CXX object CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp [ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp [ 58%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/local_anno.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 58%] Building CXX object CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp [ 58%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp [ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/alter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/alter.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp [ 58%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp [ 58%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:17: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:20: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:58:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:62:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:72:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:81:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/break_point.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp [ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/db_block.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp [ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/fasta_index_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp [ 58%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp [ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/proteoform_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp [ 59%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 59%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermAcets(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:201:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermAcets(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:201:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermShift(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:185:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermShift(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:185:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::ResFreqPtrVec toppic::proteoform_util::compNTermResidueFreq(const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:43:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::ResFreqPtrVec toppic::proteoform_util::compNTermResidueFreq(const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:43:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 59%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp [ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/residue_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp [ 59%] Building CXX object CMakeFiles/topdiff.dir/src/seq/residue_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp [ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/seq_segment.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp [ 59%] Building CXX object CMakeFiles/topdiff.dir/src/seq/seq_segment.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topmg_gui.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp [ 59%] Building CXX object CMakeFiles/topdiff.dir/src/para/peak_tolerance.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topdiff.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topdiff.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp [ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/para/sp_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topmg_gui.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp [ 59%] Building CXX object CMakeFiles/topdiff.dir/src/para/sp_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topdiff.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topdiff.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SpPara::SpPara(xercesc_3_2::DOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:47:27: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SpPara::SpPara(xercesc_3_2::DOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:47:27: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/charge_cmp.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp [ 59%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/charge_cmp.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'bool toppic::charge_cmp::isSecondBetter(const toppic::PeakPtrVec&, toppic::MatchEnvPtr, toppic::MatchEnvPtr, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:64:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'bool toppic::charge_cmp::isSecondBetter(const toppic::PeakPtrVec&, toppic::MatchEnvPtr, toppic::MatchEnvPtr, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:64:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_assign.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp [ 59%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/env_assign.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp [ 59%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/proteoform_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp [ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp [ 59%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/env_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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-I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp [ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_peak_pair.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp [ 59%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/env_peak_pair.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp [ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_rescore.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp [ 60%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/env_rescore.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 60%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 60%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermAcets(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:201:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermShift(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:185:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::ResFreqPtrVec toppic::proteoform_util::compNTermResidueFreq(const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:43:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 60%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/residue_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::Envelope::getIntensities()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:266:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::Envelope::getIntensities()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:266:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 60%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp [ 60%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/match_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp [ 60%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/seq_segment.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp [ 60%] Building CXX object CMakeFiles/topdiff_gui.dir/src/para/peak_tolerance.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp [ 60%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp [ 60%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/match_env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp [ 60%] Building CXX object CMakeFiles/topdiff_gui.dir/src/para/prsm_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp [ 60%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/match_env_refine.cpp.o /usr/bin/c++ 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CMakeFiles/topdiff.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp [ 61%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env_refine.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp [ 61%] Building CXX object CMakeFiles/topdiff_gui.dir/src/para/sp_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp [ 61%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/match_env_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp [ 61%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SpPara::SpPara(xercesc_3_2::DOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:47:27: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/charge_cmp.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'bool toppic::charge_cmp::isSecondBetter(const toppic::PeakPtrVec&, toppic::MatchEnvPtr, toppic::MatchEnvPtr, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:64:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_assign.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp [ 61%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp [ 61%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/match_env_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp [ 61%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp [ 61%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_detect.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp [ 61%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/prec_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp [ 61%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/prec_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp [ 61%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp [ 61%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/real_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp [ 61%] Building CXX object 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp [ 61%] Building CXX object 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp [ 61%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp [ 61%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::Envelope::getIntensities()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:266:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/match_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp [ 62%] Building CXX object 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp [ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp [ 62%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp [ 62%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp [ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/prm_peak_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp [ 62%] Building CXX object 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-O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp [ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp [ 62%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/spectrum_set_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp [ 62%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp [ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp [ 62%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/feature_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp [ 62%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/prec_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp [ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp [ 62%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/real_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp [ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp [ 62%] Building CXX object 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-g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp [ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp [ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp [ 62%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp [ 62%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/boost/math/special_functions/math_fwd.hpp:26, from /usr/include/boost/math/special_functions/gamma.hpp:25, from /usr/include/boost/math/distributions/poisson.hpp:40, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /usr/include/boost/math/special_functions/math_fwd.hpp:26, from /usr/include/boost/math/special_functions/gamma.hpp:25, from /usr/include/boost/math/distributions/poisson.hpp:40, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:217:21: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:218:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:219:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:220:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:223:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:224:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:225:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:226:40: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakCluster::PeakCluster(toppic::EnvelopePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:176:33: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:217:21: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:218:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:219:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:220:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:223:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:224:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:225:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:226:40: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakCluster::PeakCluster(toppic::EnvelopePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:176:33: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:247:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:248:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:269:25: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/feature_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:247:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:248:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:269:25: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster_score.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp [ 63%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster_score.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::loadTable(std::string, std::vector >&, int, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:41:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 63%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakClusterScore::PeakClusterScore(std::string&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:50:20: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::loadTable(std::string, std::vector >&, int, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:41:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 63%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakClusterScore::PeakClusterScore(std::string&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:50:20: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 63%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/sample_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topdiff.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp [ 63%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp [ 63%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/sample_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp [ 63%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time 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CMakeFiles/topdiff.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp [ 64%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp [ 64%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include 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-I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp [ 64%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/baseline_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp [ 64%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/baseline_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp [ 64%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_json_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp [ 64%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/deconv_json_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/boost/math/special_functions/math_fwd.hpp:26, from /usr/include/boost/math/special_functions/gamma.hpp:25, from /usr/include/boost/math/distributions/poisson.hpp:40, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:217:21: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:218:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:219:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:220:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:223:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:224:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:225:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:226:40: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakCluster::PeakCluster(toppic::EnvelopePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:176:33: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp [ 64%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/deconv_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:247:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:248:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:269:25: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp [ 64%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/peak_cluster_score.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp [ 64%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/deconv_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp [ 64%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/env_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp [ 64%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/extend_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp [ 64%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/extend_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::loadTable(std::string, std::vector >&, int, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:41:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakClusterScore::PeakClusterScore(std::string&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:50:20: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 64%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/ms_header.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp [ 64%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp [ 64%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/msalign_frac_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp [ 64%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets 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CMakeFiles/topdiff_gui.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp [ 65%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp [ 66%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/peak_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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CMakeFiles/topmg_gui.dir/src/ms/spec/prm_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_group.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp [ 66%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/rm_break_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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-O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp [ 67%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp [ 67%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/support_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp [ 67%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp [ 67%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp [ 67%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_algo.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:61:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:81:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:83:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:94:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:115:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:117:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/peak_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp [ 67%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp [ 67%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/prm_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:61:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:81:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:83:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:94:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:115:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:117:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp [ 67%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_group.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp [ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/rm_break_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp [ 68%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp [ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/spectrum_set.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX 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CMakeFiles/topdiff_gui.dir/src/prsm/expected_value.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX 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Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_dia_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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-I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp [ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_fdr.cpp.o /usr/bin/c++ 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-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 68%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:61:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:81:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:83:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:94:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:115:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:117:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp [ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_feature_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp [ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_coverage.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp [ 68%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp [ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp [ 68%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp [ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp [ 69%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp [ 69%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp [ 69%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp [ 69%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp [ 70%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp [ 70%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_stat.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp [ 70%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG 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-fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp [ 70%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_str.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp [ 71%] Building CXX object 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp [ 71%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX 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71%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/search_fasta_match.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp [ 71%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:16: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::SimplePrsm::setCTruncShifts(const std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:160:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:70:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:79:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:16: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::SimplePrsm::setCTruncShifts(const std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:160:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:70:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:79:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp [ 71%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp [ 71%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp [ 71%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp [ 71%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp [ 71%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp [ 72%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp [ 72%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/theo_peak_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp [ 72%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::theo_peak_util::getTheoMassVec(const toppic::TheoPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:30:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::theo_peak_util::getTheoMassVec(const toppic::TheoPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:30:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o -MF CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o.d -o CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_prsm.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:16: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::SimplePrsm::setCTruncShifts(const std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:160:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:70:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:79:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 72%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/merge/feature_prsm_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/merge/feature_prsm_reader.cpp.o.d -o 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp [ 72%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp [ 72%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::theo_peak_util::getTheoMassVec(const toppic::TheoPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:30:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 74%] Building CXX object CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_prsm.cpp [ 75%] Building CXX object CMakeFiles/topmerge.dir/src/console/topmerge_process.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_prsm_reader.cpp [ 75%] Building CXX object CMakeFiles/topdiff_gui.dir/src/merge/feature_sample_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/merge/feature_sample_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/merge/feature_sample_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/merge/feature_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_sample_merge.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_sample_merge.cpp:21: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector >::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/index/zero_ptm_index.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]', inlined from 'void toppic::sampleAlignTime(FeaturePrsmPtrVec&, FeaturePrsmPtrVec&, double, std::vector >&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_sample_merge.cpp:200:23: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]', inlined from 'void toppic::sampleAlignTime(FeaturePrsmPtrVec&, FeaturePrsmPtrVec&, double, std::vector >&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_sample_merge.cpp:205:25: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]', inlined from 'void toppic::sampleAlignTime(FeaturePrsmPtrVec&, FeaturePrsmPtrVec&, double, std::vector >&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_sample_merge.cpp:231:23: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector > >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/util/run_exe.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/gui/util/run_exe.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/gui/util/run_exe.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/gui/util/run_exe.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/util/run_exe.cpp [ 75%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/activation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/activation.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation.cpp [ 75%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/activation_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/mocs_compilation.cpp [ 75%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/base_data.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match.cpp [ 75%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/ion.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp [ 75%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/ion_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp [ 75%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/mod.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp [ 75%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/mod_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp [ 75%] Building CXX object CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmerge_gui.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmerge_gui.cpp.o -MF 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-Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::MassMatchPtr toppic::mass_match_factory::getMassMatchPtr(const toppic::ProteoformPtrVec&, std::vector >&, double, double, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:57:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmerge_gui.cpp: In function 'int main(int, char**)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmerge_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 40 | QRect deskRect = desk->availableGeometry(); | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/QDesktopWidget:1, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmerge_gui.cpp:19: /usr/include/arm-linux-gnueabihf/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmergedialog.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmergedialog.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmergedialog.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmergedialog.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmergedialog.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::mass_match_util::addTruncShifts(toppic::ProtCandidatePtrVec&, toppic::MassMatchPtr, std::vector&, int, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp:70:23: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/massmatch/prot_candidate.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/massmatch/prot_candidate.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:213:27: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/mng/diag_filter_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp [ 75%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/neutral_loss.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp [ 75%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp [ 75%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/neutral_loss_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp [ 76%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp [ 76%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/amino_acid.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp [ 76%] Building CXX object CMakeFiles/topmerge.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topmerge.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp [ 76%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/amino_acid_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 76%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/base_data.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp [ 76%] Building CXX object CMakeFiles/topmerge.dir/src/common/util/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topmerge.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp [ 76%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/ion.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp [ 76%] Building CXX object CMakeFiles/topmerge.dir/src/common/util/mem_check.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topmerge.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp [ 76%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/ion_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: /usr/include/c++/13/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/ion_type_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp [ 76%] Building CXX object CMakeFiles/topmerge.dir/src/common/util/str_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topmerge.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp [ 76%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/mod.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp [ 76%] Building CXX object CMakeFiles/topmerge.dir/src/common/util/time_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topmerge.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp [ 76%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o /usr/bin/c++ 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CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp [ 76%] Building CXX object CMakeFiles/topmerge.dir/src/common/xml/xml_dom_document.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topmerge.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp [ 76%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/mod_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topmerge.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp [ 76%] Building CXX object CMakeFiles/topmerge.dir/src/common/xml/xml_dom_parser.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topmerge.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/topmerge.dir/src/common/xml/xml_dom_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topmerge.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp [ 76%] Building CXX object CMakeFiles/topmerge.dir/src/common/xml/xml_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:213:27: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 76%] Building CXX object CMakeFiles/topmerge.dir/src/seq/alter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp [ 77%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/neutral_loss_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/neutral_loss_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.cpp [ 77%] Building CXX object CMakeFiles/topmerge.dir/src/seq/alter_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX 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-I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp [ 78%] Building CXX object CMakeFiles/topmerge.dir/src/seq/bp_spec.cpp.o /usr/bin/c++ 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CMakeFiles/topmerge.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp [ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/prot_mod_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/prot_mod_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/prot_mod_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/prot_mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:17: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:20: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:58:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:62:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:72:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:81:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 78%] Building CXX object CMakeFiles/topmerge.dir/src/seq/break_point.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp [ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/prot_mod_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/prot_mod_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/prot_mod_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/prot_mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_util.cpp [ 78%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp [ 78%] Building CXX object CMakeFiles/topmerge.dir/src/seq/db_block.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp [ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/ptm_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp [ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/ptm_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include 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78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/residue.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp [ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/residue_freq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/residue_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp [ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp [ 78%] Building CXX object CMakeFiles/topmerge.dir/src/seq/local_anno.cpp.o /usr/bin/c++ 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CMakeFiles/topmerge.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp [ 78%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/diag/diag_header_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp [ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 78%] Building CXX object CMakeFiles/topmerge.dir/src/seq/mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp [ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/trunc.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp [ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/trunc_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp [ 78%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/diag/diag_pair_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp [ 78%] Building CXX object CMakeFiles/topmerge.dir/src/seq/proteoform.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp [ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/trunc_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/thread/simple_thread_pool.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::DiagPairPtrVec toppic::diag_pair_util::compDiagPair(const toppic::PrmPeakPtrVec&, int, const std::vector&, toppic::DiagHeaderPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:42:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 78%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/diag/diagonal_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/diag/diagonal_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp [ 78%] Building CXX object CMakeFiles/topmerge.dir/src/seq/proteoform_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp [ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 78%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/dist.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/dist.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/dist.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graph/dist.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/dist.cpp [ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/util/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp [ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/util/mem_check.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 78%] Building CXX object CMakeFiles/topmerge.dir/src/seq/proteoform_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp [ 78%] Building CXX object CMakeFiles/topmerge.dir/src/seq/proteoform_util.cpp.o /usr/bin/c++ 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-Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/proteo_anno.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/proteo_anno.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graph/proteo_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_anno.cpp [ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/util/time_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermAcets(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:201:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 79%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermShift(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:185:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::ResFreqPtrVec toppic::proteoform_util::compNTermResidueFreq(const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:43:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 79%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp [ 79%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_impl.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp [ 80%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp [ 80%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/alter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topmerge.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topmerge.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp [ 80%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/amino_acid_replace.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SpPara::SpPara(xercesc_3_2::DOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:47:27: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 80%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/charge_cmp.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp [ 80%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/bp_spec.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'bool toppic::charge_cmp::isSecondBetter(const toppic::PeakPtrVec&, toppic::MatchEnvPtr, toppic::MatchEnvPtr, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:64:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 80%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph_reader.cpp [ 80%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/env_assign.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:17: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:20: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:58:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:62:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:72:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:81:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 80%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/break_point.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp [ 80%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/env_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp [ 80%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/db_block.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp [ 80%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp [ 81%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/env_detect.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp [ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp [ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topmerge.dir/src/ms/env/env_peak_pair.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp [ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp [ 81%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/env_rescore.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp [ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 81%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ [ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/local_anno.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::Envelope::getIntensities()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:266:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 81%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 81%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp [ 81%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp [ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp [ 81%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env_refine.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp [ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/proteoform.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp [ 81%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:16: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::SpecGraphPtrVec toppic::SpecGraphReader::getNextSpecGraphPtrVec(toppic::SpectrumSetPtr, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:71:24: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::SpecGraphPtrVec toppic::SpecGraphReader::getNextSpecGraphPtrVec(toppic::SpectrumSetPtr, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:73:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::SpecGraphPtrVec toppic::SpecGraphReader::getNextSpecGraphPtrVec(toppic::SpectrumSetPtr, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp:74:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 81%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o.d -o 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align.cpp [ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/proteoform_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp [ 81%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/prec_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/prec_env.cpp.o.d -o 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp [ 81%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp [ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/proteoform_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp [ 82%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermAcets(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:201:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermShift(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:185:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::ResFreqPtrVec toppic::proteoform_util::compNTermResidueFreq(const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:43:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/residue_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp [ 82%] Building CXX 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp [ 82%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp [ 82%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align_processor.cpp [ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/para/prsm_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp [ 82%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/prm_peak_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp [ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/para/sp_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp [ 82%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/spectrum_set_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SpPara::SpPara(xercesc_3_2::DOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:47:27: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/charge_cmp.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'bool toppic::charge_cmp::isSecondBetter(const toppic::PeakPtrVec&, toppic::MatchEnvPtr, toppic::MatchEnvPtr, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:64:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_assign.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_assign.cpp.o.d -o 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp [ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp [ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_detect.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp [ 82%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/frac_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp [ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp [ 82%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp [ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_peak_pair.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp [ 83%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp [ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_rescore.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp [ 83%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_dp_node.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_dp_node.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_dp_node.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_dp_node.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_dp_node.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp [ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp [ 83%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_post_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_post_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_post_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_post_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_post_processor.cpp [ 83%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/frac_xml_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF 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[with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::Envelope::getIntensities()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:266:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/match_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp [ 83%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/peak_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp [ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_refine.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp [ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/boost/math/special_functions/math_fwd.hpp:26, from /usr/include/boost/math/special_functions/gamma.hpp:25, from /usr/include/boost/math/distributions/poisson.hpp:40, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:217:21: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:218:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:219:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:220:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:223:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:224:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:225:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:226:40: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakCluster::PeakCluster(toppic::EnvelopePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:176:33: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object CMakeFiles/topmg_gui.dir/src/stat/count/count_test_num.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/topmg_gui.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/stat/count/count_test_num.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:247:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:248:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:269:25: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp [ 83%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/peak_cluster_score.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp [ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/prec_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp [ 83%] Building CXX object CMakeFiles/topmg_gui.dir/src/stat/count/count_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::loadTable(std::string, std::vector >&, int, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:41:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakClusterScore::PeakClusterScore(std::string&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:50:20: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/sample_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::count_util::updateNTermResidueCounts(toppic::ResiduePtrVec&, std::vector&, const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:66:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 83%] Building CXX object CMakeFiles/topmg_gui.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -MF CMakeFiles/topmg_gui.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp [ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/real_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp [ 83%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/sample_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp: In member function 'toppic::ResiduePtrVec toppic::CompPValueMCMC::randomTrans(toppic::ResiduePtrVec)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:77:22: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 77 | std::random_shuffle(ori_res.begin(), ori_res.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:17: /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:86:24: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 86 | std::random_shuffle(res_seq.begin(), res_seq.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here 4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ [ 84%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp [ 84%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/sample_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 84%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/savitzky_golay.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:47:28: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:50:28: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:53:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:53:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:55:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'void toppic::getTheoMassVec(const ResiduePtrVec&, IonTypePtr, IonTypePtr, double, std::vector&, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:55:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 84%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 84%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp [ 84%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/single_charge_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp [ 84%] Building CXX object CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_dpr_processor.cpp [ 84%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/spec_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp [ 84%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/spec_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp [ 84%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_util.cpp.o /usr/bin/c++ 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp [ 84%] Building CXX object 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/c++/13/bits/random.h:34, from /usr/include/c++/13/random:51, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_dpr_processor.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector > toppic::DprProcessor::compPtmComb()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_dpr_processor.cpp:126:34: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 84%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/deconv_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp [ 84%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/deconv_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp [ 84%] Building CXX object 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Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp [ 85%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp [ 85%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/raw_ms_group.cpp.o /usr/bin/c++ 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-I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp [ 85%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/rm_break_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/rm_break_type.cpp.o.d -o 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/boost/math/special_functions/math_fwd.hpp:26, from /usr/include/boost/math/special_functions/gamma.hpp:25, from /usr/include/boost/math/distributions/poisson.hpp:40, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:217:21: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:218:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:219:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:220:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:223:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:224:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:225:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:226:40: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakCluster::PeakCluster(toppic::EnvelopePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:176:33: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_ptm_position.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_ptm_position.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_ptm_position.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm_position.cpp In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:247:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:248:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp [ 85%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_residue.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp [ 85%] Building CXX object CMakeFiles/topmerge.dir/src/stat/local/local_mng.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/stat/local/local_processor.cpp.o -MF CMakeFiles/topmerge.dir/src/stat/local/local_processor.cpp.o.d -o CMakeFiles/topmerge.dir/src/stat/local/local_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp [ 85%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_xml_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include 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included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::loadTable(std::string, std::vector >&, int, int)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:41:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakClusterScore::PeakClusterScore(std::string&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:50:20: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 85%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp [ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/json_transformer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/json_transformer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/json_transformer.cpp [ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:23: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::ProteoformPtr toppic::LocalProcessor::twoPtmLocalize(toppic::ProteoformPtr, const toppic::ExtendMsPtrVec&, int, toppic::PtmPtr, toppic::PtmPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:556:27: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::ProteoformPtr toppic::LocalProcessor::onePtmLocalize(toppic::ProteoformPtr, const toppic::ExtendMsPtrVec&, double, int, toppic::PtmPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:319:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::ProteoformPtr toppic::LocalProcessor::onePtmLocalize(toppic::ProteoformPtr, const toppic::ExtendMsPtrVec&, double, int, toppic::PtmPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:322:24: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp [ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/savitzky_golay.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp [ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/single_charge_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp [ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/xml_generator.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/xml_generator.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/xml_generator.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/xml_generator.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp [ 86%] Building CXX object CMakeFiles/topmerge.dir/src/stat/local/local_proteoform.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/stat/local/local_proteoform.cpp.o -MF CMakeFiles/topmerge.dir/src/stat/local/local_proteoform.cpp.o.d -o CMakeFiles/topmerge.dir/src/stat/local/local_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_proteoform.cpp [ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp [ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp [ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp [ 87%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/base_peak_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp [ 87%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/baseline_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp [ 87%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_json_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp [ 87%] Building CXX object CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp [ 87%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp [ 87%] Building CXX object CMakeFiles/topmg_gui.dir/src/gui/util/run_exe.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/gui/util/run_exe.cpp.o -MF CMakeFiles/topmg_gui.dir/src/gui/util/run_exe.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/gui/util/run_exe.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/util/run_exe.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:21: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::local_util::compMTable(const std::vector&, double, const std::vector&, toppic::PeakTolerancePtr, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:107:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 87%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp [ 87%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/env_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp [ 87%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/expected_value.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp [ 87%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/extend_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_writer.cpp.o.d -o 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/console/topconvert_process.cpp.o -MF CMakeFiles/topconvert.dir/src/console/topconvert_process.cpp.o.d -o CMakeFiles/topconvert.dir/src/console/topconvert_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topconvert_process.cpp [ 87%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp [ 87%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/peak_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/peak_util.cpp.o.d -o 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp [ 87%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_algo.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:61:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:81:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:83:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:94:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:115:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:117:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 88%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/console/toppic_argument.cpp.o -MF CMakeFiles/topconvert.dir/src/console/toppic_argument.cpp.o.d -o CMakeFiles/topconvert.dir/src/console/toppic_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/toppic_argument.cpp [ 88%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/rm_break_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp [ 88%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_coverage.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include 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object CMakeFiles/topmerge_gui.dir/src/ms/spec/spectrum_set.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/stat/local/local_processor.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/stat/local/local_processor.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/stat/local/local_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp [ 89%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_cutoff_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:23: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::ProteoformPtr toppic::LocalProcessor::twoPtmLocalize(toppic::ProteoformPtr, const toppic::ExtendMsPtrVec&, int, toppic::PtmPtr, toppic::PtmPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:556:27: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 89%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/amino_acid.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp [ 89%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_dia_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::ProteoformPtr toppic::LocalProcessor::onePtmLocalize(toppic::ProteoformPtr, const toppic::ExtendMsPtrVec&, double, int, toppic::PtmPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:319:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::ProteoformPtr toppic::LocalProcessor::onePtmLocalize(toppic::ProteoformPtr, const toppic::ExtendMsPtrVec&, double, int, toppic::PtmPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:322:24: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 89%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/amino_acid_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp [ 89%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/base_data.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp [ 89%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_fdr.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp [ 89%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/ion.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp [ 89%] Building CXX object CMakeFiles/topmerge_gui.dir/src/stat/local/local_proteoform.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui 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-I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/mod.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod.cpp [ 89%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/mod_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp [ 89%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp [ 89%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/mod_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:18: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 89%] Building CXX object CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp [ 89%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:21: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:213:27: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:215:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' at /usr/include/c++/13/bits/stl_algo.h:4861:18, inlined from 'std::vector toppic::mod_util::getModMassVec(const toppic::ModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp:221:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:21: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 89%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/neutral_loss.cpp.o In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'void toppic::local_util::compMTable(const std::vector&, double, const std::vector&, toppic::PeakTolerancePtr, std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:107:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp [ 89%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/neutral_loss_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:61:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:81:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:83:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:94:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:115:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:117:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 90%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp [ 90%] 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topconvert.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp [ 90%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_str.cpp.o /usr/bin/c++ 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CMakeFiles/topmerge.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp [ 90%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp [ 90%] Building CXX object CMakeFiles/topconvert.dir/src/common/util/file_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topconvert.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp [ 90%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ [ 90%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_str_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topmerge.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp [ 90%] Building CXX object CMakeFiles/topconvert.dir/src/common/util/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topconvert.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp [ 90%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_fdr.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp [ 90%] Building CXX object CMakeFiles/topconvert.dir/src/common/util/mem_check.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topconvert.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp In file included from /usr/include/c++/13/map:62, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp:19: /usr/include/c++/13/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, double>; _KeyOfValue = std::_Select1st, double> >; _Compare = std::less >; _Alloc = std::allocator, double> >]': /usr/include/c++/13/bits/stl_tree.h:2210:5: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, double>, std::_Select1st, double> >, std::less >, std::allocator, double> > >::const_iterator' changed in GCC 7.1 2210 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 90%] Building CXX object CMakeFiles/topconvert.dir/src/common/util/str_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topconvert.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp [ 90%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp [ 90%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_feature_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp [ 91%] Building CXX object CMakeFiles/topconvert.dir/src/seq/alter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/alter.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object CMakeFiles/topconvert.dir/src/seq/alter_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp [ 91%] Building CXX object CMakeFiles/topconvert.dir/src/seq/amino_acid_replace.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp [ 91%] Building CXX object CMakeFiles/topconvert.dir/src/seq/bp_spec.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp In file included from /usr/include/c++/13/bits/stl_algo.h:61, from /usr/include/c++/13/algorithm:61, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:17: /usr/include/c++/13/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1812 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1812:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:20: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]': /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1918 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1918:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/13/bits/stl_algo.h:1932:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1932 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:58:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:62:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getBreakPointMasses(toppic::IonTypePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:65:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:72:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getPrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:74:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:81:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: /usr/include/c++/13/bits/stl_algo.h:1947:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1947 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1948 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1949 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]' at /usr/include/c++/13/bits/stl_algo.h:1950:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = less]' at /usr/include/c++/13/bits/stl_algo.h:4894:18, inlined from 'std::vector toppic::BpSpec::getSrmMasses()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp:83:12: /usr/include/c++/13/bits/stl_algo.h:1859:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1859 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:1864:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1864 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object CMakeFiles/topconvert.dir/src/seq/break_point.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/break_point.cpp.o.d -o 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp [ 91%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp [ 91%] Building CXX object CMakeFiles/topconvert.dir/src/seq/db_block.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp [ 91%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_index_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp [ 92%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp [ 92%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_sub_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp [ 92%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp [ 92%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:16: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::SimplePrsm::setCTruncShifts(const std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:160:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:70:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:79:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp [ 92%] Building CXX object CMakeFiles/topconvert.dir/src/seq/local_anno.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp [ 92%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::LocalAnno::LocalAnno(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp:44:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 92%] Building CXX object CMakeFiles/topconvert.dir/src/seq/mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp [ 92%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_str.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp [ 93%] Building CXX object CMakeFiles/topconvert.dir/src/seq/proteoform_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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-I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp [ 93%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/theo_peak_util.cpp.o /usr/bin/c++ 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-Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::theo_peak_util::getTheoMassVec(const toppic::TheoPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:30:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermAcets(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:201:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::proteoform_util::getNTermShift(toppic::ProteoformPtr, const toppic::ProtModPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:185:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'toppic::ResFreqPtrVec toppic::proteoform_util::compNTermResidueFreq(const toppic::ProteoformPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:43:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 93%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_cleavage.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include 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Building CXX object CMakeFiles/topconvert.dir/src/seq/residue_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp [ 93%] Building CXX object CMakeFiles/topconvert.dir/src/para/peak_tolerance.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topconvert.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topconvert.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp [ 93%] Building CXX object 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp [ 94%] Building CXX object CMakeFiles/topconvert.dir/src/para/prsm_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topconvert.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topconvert.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp [ 94%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp [ 94%] Building CXX object CMakeFiles/topconvert.dir/src/para/sp_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topconvert.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topconvert.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp [ 94%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:15: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SpPara::SpPara(xercesc_3_2::DOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp:47:27: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 94%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/charge_cmp.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'bool toppic::charge_cmp::isSecondBetter(const toppic::PeakPtrVec&, toppic::MatchEnvPtr, toppic::MatchEnvPtr, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp:64:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 94%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/env_assign.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp [ 94%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/env_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp [ 94%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_prsm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp [ 94%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/env_detect.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include 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Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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-DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp [ 94%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_ptm_position.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp [ 94%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/env_peak_pair.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include 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94%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/env_rescore.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_xml_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp [ 94%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/search_fasta_match.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::env_rescore::diff(toppic::MatchEnvPtr, toppic::MatchEnvPtr2D&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp:33:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 94%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp [ 94%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp [ 94%] Building CXX object CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/json_transformer.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::Envelope::getIntensities()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp:266:26: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 94%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/match_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:16: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::SimplePrsm::setCTruncShifts(const std::vector&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:160:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:70:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:79:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 94%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/match_env_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp [ 94%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp [ 94%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/match_env_refine.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets 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CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp [ 94%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/match_env_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 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-I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp [ 94%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/real_env.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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95%] Building CXX object CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp [ 95%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_cleavage.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_ms.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::extend_ms_util::getExtendMassVec(toppic::ExtendMsPtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp:35:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 95%] Building CXX object CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::theo_peak_util::getTheoMassVec(const toppic::TheoPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:30:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 95%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_file_list.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp [ 96%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp [ 96%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_proteoform.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp [ 96%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_prsm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp [ 96%] Building CXX object CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp [ 96%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm.cpp [ 97%] Building CXX object CMakeFiles/topconvert.dir/src/ms/factory/prm_peak_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topconvert.dir/src/ms/feature/peak_cluster_score.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:18: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 97%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/sample_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:41:24: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakClusterScore::PeakClusterScore(std::string&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp:50:20: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 97%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/sample_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp [ 97%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/savitzky_golay.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp [ 97%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/single_charge_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/boost/math/special_functions/math_fwd.hpp:26, from /usr/include/boost/math/special_functions/gamma.hpp:25, from /usr/include/boost/math/distributions/poisson.hpp:40, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 529 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [ 97%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/spec_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:217:21: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:218:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:219:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:220:27: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:223:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:224:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:225:26: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::clearScores()' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:226:40: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::PeakCluster::PeakCluster(toppic::EnvelopePtr)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:176:33: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 97%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp [ 97%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:247:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:248:17: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void toppic::PeakCluster::updateScore(toppic::PeakPtrVec2D&, bool)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp:269:25: /usr/include/c++/13/bits/stl_vector.h:1037:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 97%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/base_peak_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp [ 97%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/baseline_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp [ 97%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/deconv_json_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp [ 97%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/deconv_ms_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp In file included from /usr/include/c++/13/vector:72, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:61:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:81:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compMsMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:83:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:94:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:115:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::prsm_algo::compTheoMassPpos(const std::vector&, const std::vector&, double)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp:117:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 99%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp [ 99%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_coverage.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp [ 99%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_fdr.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp [ 99%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_feature_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore 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CMakeFiles/topconvert.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp [ 99%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp [ 99%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] 51 | bool write_multiple_matches_; | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] 47 | std::string output_file_ext_; | ^~~~~~~~~~~~~~~~ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ [ 99%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf 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CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp [ 99%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_reader_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 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-D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp [100%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets 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-I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_reader.cpp.o -MF 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[with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ [100%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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'__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:70:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1292 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'toppic::SimplePrsm::SimplePrsm(toppic::XmlDOMElement*)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:79:30: /usr/include/c++/13/bits/stl_vector.h:1292:28: note: parameter passing for argument of type 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-D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp [100%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_table_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp [100%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_util.cpp.o /usr/bin/c++ 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CMakeFiles/topconvert.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp [100%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/arm-linux-gnueabihf/qt5 -I/usr/include/arm-linux-gnueabihf/qt5/QtWidgets -I/usr/include/arm-linux-gnueabihf/qt5/QtGui -I/usr/include/arm-linux-gnueabihf/qt5/QtCore -I/usr/lib/arm-linux-gnueabihf/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:17: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1299:21, inlined from 'std::vector toppic::theo_peak_util::getTheoMassVec(const toppic::TheoPeakPtrVec&)' at /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:30:21: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topconvert /usr/bin/cmake -E cmake_link_script CMakeFiles/topconvert.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat 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/build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/controllers -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/controllers/seqofexecution.ts -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/controllers/index.ts -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/controllers/seqofexecution.js -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/controllers/index.js -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/massInteView.ts -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/errorView.ts -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/errorView.js -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/ionTableView.ts -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/massInteView.js -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/helperView.js -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/ionTableView.js -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/base.js -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/ionCheckBoxView.js -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/sequenceView.ts -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/sequenceView.js -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/helperView.ts -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/fixedPtmView.js -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/graphTabView.js -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/infoView.js -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/graphTabView.ts -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/peakView.ts -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/infoView.ts -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/fixedPtmView.ts -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/base.ts -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/peakView.js -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/js/views/ionCheckBoxView.ts -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/css -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/css/inspect.css -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/spectrum.html -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/example -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/example/setLocalStorage.js -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/topmsv/inspect/spectrum_no_nav.html -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/envcnn_models -- Installing: /build/reproducible-path/toppic-1.5.3+dfsg1/debian/tmp/usr/share/toppic/envcnn_models/envcnn_2_block_model.json make[1]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-arm-linux-gnueabihf' dh_install -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/bin cp --reflink=auto -a ./debian/tmp/usr/bin/topconvert ./debian/tmp/usr/bin/topdiff ./debian/tmp/usr/bin/topdiff_gui ./debian/tmp/usr/bin/topfd ./debian/tmp/usr/bin/topfd_gui ./debian/tmp/usr/bin/topindex ./debian/tmp/usr/bin/topindex_gui ./debian/tmp/usr/bin/topmerge ./debian/tmp/usr/bin/topmerge_gui ./debian/tmp/usr/bin/topmg ./debian/tmp/usr/bin/topmg_gui ./debian/tmp/usr/bin/toppic ./debian/tmp/usr/bin/toppic_gui debian/toppic/usr/bin/ install -m0755 -d debian/toppic-common//usr/share cp --reflink=auto -a debian/tmp/usr/share/toppic debian/toppic-common//usr/share/ install -m0755 -d debian/toppic-common/usr/share/doc/toppic-common/ cp --reflink=auto -a ./doc/images ./doc/linux_build.md ./doc/msconvert_linux.md ./doc/records_of_the_gui.md ./doc/topfd_manual.md ./doc/topmg_manual.md ./doc/toppic_manual.md ./doc/tutorial.md ./doc/windows_build.md ./releases/example_files debian/toppic-common/usr/share/doc/toppic-common// install -m0755 -d debian/toppic-common/usr/share/toppic/local-source-copies/ cp --reflink=auto -a ./debian/local-source-copies/datatables.min.css ./debian/local-source-copies/datatables.min.js debian/toppic-common/usr/share/toppic/local-source-copies// dh_installdocs -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/share/doc/toppic install -p -m0644 debian/README.Debian debian/toppic/usr/share/doc/toppic/README.Debian install -p -m0644 debian/copyright debian/toppic/usr/share/doc/toppic/copyright install -p -m0644 debian/copyright debian/toppic-common/usr/share/doc/toppic-common/copyright dh_installchangelogs -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/share/doc/toppic install -p -m0644 debian/.debhelper/generated/toppic/dh_installchangelogs.dch.trimmed debian/toppic/usr/share/doc/toppic/changelog.Debian install -m0755 -d debian/toppic-common/usr/share/doc/toppic-common install -p -m0644 debian/.debhelper/generated/toppic-common/dh_installchangelogs.dch.trimmed debian/toppic-common/usr/share/doc/toppic-common/changelog.Debian dh_installman -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/share/man/man1/ install -p -m0644 ./debian/topfd.1 debian/toppic/usr/share/man/man1/topfd.1 install -m0755 -d debian/toppic/usr/share/man/man1/ install -p -m0644 ./debian/toppic.1 debian/toppic/usr/share/man/man1/toppic.1 install -m0755 -d debian/toppic/usr/share/man/man1/ install -p -m0644 ./debian/topmg.1 debian/toppic/usr/share/man/man1/topmg.1 install -m0755 -d debian/toppic/usr/share/man/man1/ install -p -m0644 ./debian/topdiff.1 debian/toppic/usr/share/man/man1/topdiff.1 man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topdiff.1 debian/toppic/usr/share/man/man1/topfd.1 man-recode --to-code UTF-8 --suffix .dh-new debian/toppic/usr/share/man/man1/topmg.1 debian/toppic/usr/share/man/man1/toppic.1 mv debian/toppic/usr/share/man/man1/topmg.1.dh-new debian/toppic/usr/share/man/man1/topmg.1 mv debian/toppic/usr/share/man/man1/toppic.1.dh-new debian/toppic/usr/share/man/man1/toppic.1 chmod 0644 -- debian/toppic/usr/share/man/man1/topmg.1 debian/toppic/usr/share/man/man1/toppic.1 mv debian/toppic/usr/share/man/man1/topdiff.1.dh-new debian/toppic/usr/share/man/man1/topdiff.1 mv debian/toppic/usr/share/man/man1/topfd.1.dh-new debian/toppic/usr/share/man/man1/topfd.1 chmod 0644 -- debian/toppic/usr/share/man/man1/topdiff.1 debian/toppic/usr/share/man/man1/topfd.1 dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/share/man/man1 rm -f debian/toppic/usr/share/man/man1/topdiff_gui.1.gz ln -s topdiff.1.gz debian/toppic/usr/share/man/man1/topdiff_gui.1.gz install -m0755 -d debian/toppic/usr/share/man/man1 rm -f debian/toppic/usr/share/man/man1/topmg_gui.1.gz ln -s topmg.1.gz debian/toppic/usr/share/man/man1/topmg_gui.1.gz install -m0755 -d debian/toppic/usr/share/man/man1 rm -f debian/toppic/usr/share/man/man1/toppic_gui.1.gz ln -s toppic.1.gz debian/toppic/usr/share/man/man1/toppic_gui.1.gz install -m0755 -d debian/toppic-common/usr/share/toppic/topview/visual/css rm -f debian/toppic-common/usr/share/toppic/topview/visual/css/FreeMono.ttf ln -s ../../../../fonts/truetype/freefont/FreeMono.ttf debian/toppic-common/usr/share/toppic/topview/visual/css/FreeMono.ttf install -m0755 -d debian/toppic-common/usr/share/toppic/topview/js/lib rm -f debian/toppic-common/usr/share/toppic/topview/js/lib/popper.min.js ln -s ../../../../nodejs/popper.js/dist/popper.min.js debian/toppic-common/usr/share/toppic/topview/js/lib/popper.min.js install -m0755 -d debian/toppic-common/usr/share/toppic/topview/js/lib rm -f debian/toppic-common/usr/share/toppic/topview/js/lib/jQuery_3_4.js ln -s ../../../../nodejs/jquery/dist/jquery.js debian/toppic-common/usr/share/toppic/topview/js/lib/jQuery_3_4.js install -m0755 -d debian/toppic-common/usr/share/toppic/topview/js/lib rm -f debian/toppic-common/usr/share/toppic/topview/js/lib/jQuery-ui_1_11_4.min.js ln -s ../../../../javascript/jquery-ui/jquery-ui.min.js debian/toppic-common/usr/share/toppic/topview/js/lib/jQuery-ui_1_11_4.min.js install -m0755 -d debian/toppic-common/usr/share/toppic/topview/visual/js/prsm rm -f debian/toppic-common/usr/share/toppic/topview/visual/js/prsm/FileSaver.js ln -s ../../../../../javascript/filesaver/FileSaver.js debian/toppic-common/usr/share/toppic/topview/visual/js/prsm/FileSaver.js install -m0755 -d debian/toppic-common/usr/share/toppic/topview/js/lib/download rm -f debian/toppic-common/usr/share/toppic/topview/js/lib/download/FileSaver.js ln -s ../../../../../javascript/filesaver/FileSaver.js debian/toppic-common/usr/share/toppic/topview/js/lib/download/FileSaver.js install -m0755 -d debian/toppic-common/usr/share/toppic/topview/inspect/js/download rm -f debian/toppic-common/usr/share/toppic/topview/inspect/js/download/FileSaver.js ln -s ../../../../../javascript/filesaver/FileSaver.js debian/toppic-common/usr/share/toppic/topview/inspect/js/download/FileSaver.js install -m0755 -d debian/toppic-common/usr/share/toppic/topview/js/lib/bootstrap rm -f debian/toppic-common/usr/share/toppic/topview/js/lib/bootstrap/bootstrap.min.js ln -s ../../../../../nodejs/bootstrap/dist/js/bootstrap.min.js debian/toppic-common/usr/share/toppic/topview/js/lib/bootstrap/bootstrap.min.js rm -f debian/toppic-common/usr/share/toppic/topview/inspect/js/download/FileSaver.js ln -s ../../../../../javascript/filesaver/FileSaver.js debian/toppic-common/usr/share/toppic/topview/inspect/js/download/FileSaver.js dh_strip_nondeterminism -O--buildsystem=cmake Using 1667166702 as canonical time Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/msconvert_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_2.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_2.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/topfd_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/pwiz_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc_disabled.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_both.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/png.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/svg.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/download.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_777620_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_444444_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_555555_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_ffffff_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_777777_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_cc0000_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc_disabled.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=cmake cd debian/toppic-common cd debian/toppic chmod a-x usr/share/doc/toppic-common/changelog.Debian usr/share/doc/toppic-common/topmg_manual.md usr/share/doc/toppic-common/toppic_manual.md usr/share/doc/toppic-common/tutorial.md chmod a-x usr/share/doc/toppic/changelog.Debian usr/share/man/man1/topdiff.1 usr/share/man/man1/topfd.1 usr/share/man/man1/topmg.1 usr/share/man/man1/toppic.1 gzip -9nf usr/share/doc/toppic-common/changelog.Debian usr/share/doc/toppic-common/topmg_manual.md usr/share/doc/toppic-common/toppic_manual.md usr/share/doc/toppic-common/tutorial.md gzip -9nf usr/share/doc/toppic/changelog.Debian usr/share/man/man1/topdiff.1 usr/share/man/man1/topfd.1 usr/share/man/man1/topmg.1 usr/share/man/man1/toppic.1 cd '/build/reproducible-path/toppic-1.5.3+dfsg1' cd '/build/reproducible-path/toppic-1.5.3+dfsg1' dh_fixperms -O--buildsystem=cmake find debian/toppic ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/toppic-common ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/toppic/usr/share/doc -type f -a -true -a ! -regex 'debian/toppic/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/toppic-common/usr/share/doc -type f -a -true -a ! -regex 'debian/toppic-common/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic-common/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/toppic -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic-common -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/lib/debug/.dwz/arm-linux-gnueabihf dwz -mdebian/toppic/usr/lib/debug/.dwz/arm-linux-gnueabihf/toppic.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/toppic.debug -- debian/toppic/usr/bin/topconvert debian/toppic/usr/bin/topdiff debian/toppic/usr/bin/topdiff_gui debian/toppic/usr/bin/topfd debian/toppic/usr/bin/topfd_gui debian/toppic/usr/bin/topindex debian/toppic/usr/bin/topindex_gui debian/toppic/usr/bin/topmerge debian/toppic/usr/bin/topmerge_gui debian/toppic/usr/bin/topmg debian/toppic/usr/bin/topmg_gui debian/toppic/usr/bin/toppic debian/toppic/usr/bin/toppic_gui objcopy --compress-debug-sections debian/toppic/usr/lib/debug/.dwz/arm-linux-gnueabihf/toppic.debug chmod 0644 -- debian/toppic/usr/lib/debug/.dwz/arm-linux-gnueabihf/toppic.debug dh_strip -a -O--buildsystem=cmake install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b9 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmg_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b9/5640d6b7c667efad28209b3453c10bc6a0ed6a.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b9/5640d6b7c667efad28209b3453c10bc6a0ed6a.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmg_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b9/5640d6b7c667efad28209b3453c10bc6a0ed6a.debug debian/toppic/usr/bin/topmg_gui install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ec objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/toppic debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ec/b8cda03f6725a514ba36216fd81d1861affa5d.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ec/b8cda03f6725a514ba36216fd81d1861affa5d.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/toppic objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ec/b8cda03f6725a514ba36216fd81d1861affa5d.debug debian/toppic/usr/bin/toppic install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/e7 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topfd debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/e7/afa9ec4f3f158d027c72f2c9b598f4fcf3e476.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/e7/afa9ec4f3f158d027c72f2c9b598f4fcf3e476.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topfd objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/e7/afa9ec4f3f158d027c72f2c9b598f4fcf3e476.debug debian/toppic/usr/bin/topfd install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/84 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topdiff debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/84/f6b9ccedf70ea0cfe390444a6f6bb88d460581.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/84/f6b9ccedf70ea0cfe390444a6f6bb88d460581.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topdiff objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/84/f6b9ccedf70ea0cfe390444a6f6bb88d460581.debug debian/toppic/usr/bin/topdiff install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b0 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topindex_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b0/4733f948a4288e3f71d1a333570fff8f9ac3d5.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b0/4733f948a4288e3f71d1a333570fff8f9ac3d5.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topindex_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b0/4733f948a4288e3f71d1a333570fff8f9ac3d5.debug debian/toppic/usr/bin/topindex_gui install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/aa objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topconvert debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/aa/7de6d35e546f1747dfb42eee0c0ced156d8058.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/aa/7de6d35e546f1747dfb42eee0c0ced156d8058.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topconvert objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/aa/7de6d35e546f1747dfb42eee0c0ced156d8058.debug debian/toppic/usr/bin/topconvert install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/24 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmerge_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/24/503775ec5283266456fc8eaa3ab8d81768ffb0.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/24/503775ec5283266456fc8eaa3ab8d81768ffb0.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmerge_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/24/503775ec5283266456fc8eaa3ab8d81768ffb0.debug debian/toppic/usr/bin/topmerge_gui install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/35 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topdiff_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/35/28efd8968e4fb87572d62141eb601ee5f786c8.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/35/28efd8968e4fb87572d62141eb601ee5f786c8.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topdiff_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/35/28efd8968e4fb87572d62141eb601ee5f786c8.debug debian/toppic/usr/bin/topdiff_gui install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/11 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmerge debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/11/e6c874abe22f634b41b1b98b822411257d749d.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/11/e6c874abe22f634b41b1b98b822411257d749d.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmerge objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/11/e6c874abe22f634b41b1b98b822411257d749d.debug debian/toppic/usr/bin/topmerge install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ae objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topfd_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ae/bb23b7e726ca0065c656320378841cc311307c.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ae/bb23b7e726ca0065c656320378841cc311307c.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topfd_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ae/bb23b7e726ca0065c656320378841cc311307c.debug debian/toppic/usr/bin/topfd_gui install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/1b objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topindex debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/1b/a3dedff5aba9715087f188147de3c2b8161e5d.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/1b/a3dedff5aba9715087f188147de3c2b8161e5d.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topindex objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/1b/a3dedff5aba9715087f188147de3c2b8161e5d.debug debian/toppic/usr/bin/topindex install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a1 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmg debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a1/11bf19676994daf0d27579b72a4f4f6cbbca1c.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a1/11bf19676994daf0d27579b72a4f4f6cbbca1c.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmg objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a1/11bf19676994daf0d27579b72a4f4f6cbbca1c.debug debian/toppic/usr/bin/topmg install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/00 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/toppic_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/00/adc919c9fb7f89c6abe59027c4ebfaa48add99.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/00/adc919c9fb7f89c6abe59027c4ebfaa48add99.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/toppic_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/00/adc919c9fb7f89c6abe59027c4ebfaa48add99.debug debian/toppic/usr/bin/toppic_gui install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/toppic/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/toppic/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/toppic/usr/lib/debug install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/share/doc ln -s toppic debian/.debhelper/toppic/dbgsym-root/usr/share/doc/toppic-dbgsym install -m0755 -d debian/.debhelper/toppic dh_makeshlibs -a -O--buildsystem=cmake rm -f debian/toppic/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=cmake install -m0755 -d debian/toppic/DEBIAN dpkg-shlibdeps -Tdebian/toppic.substvars debian/toppic/usr/bin/topmg_gui debian/toppic/usr/bin/toppic debian/toppic/usr/bin/topfd debian/toppic/usr/bin/topdiff debian/toppic/usr/bin/topindex_gui debian/toppic/usr/bin/topconvert debian/toppic/usr/bin/topmerge_gui debian/toppic/usr/bin/topdiff_gui debian/toppic/usr/bin/topmerge debian/toppic/usr/bin/topfd_gui debian/toppic/usr/bin/topindex debian/toppic/usr/bin/topmg debian/toppic/usr/bin/toppic_gui dpkg-shlibdeps: warning: debian/toppic/usr/bin/topfd_gui contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/toppic/usr/bin/topconvert contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/toppic/usr/bin/topfd contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/toppic/usr/bin/toppic_gui contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/toppic/usr/bin/topindex contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/toppic/usr/bin/toppic contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/toppic/usr/bin/topdiff_gui contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/toppic/usr/bin/topmg_gui contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/toppic/usr/bin/topmerge_gui contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/toppic/usr/bin/topmerge contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/toppic/usr/bin/topindex_gui contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/toppic/usr/bin/topmg contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/toppic/usr/bin/topdiff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -O--buildsystem=cmake install -m0755 -d debian/toppic/DEBIAN install -m0755 -d debian/toppic-common/DEBIAN dh_gencontrol -O--buildsystem=cmake install -m0755 -d debian/toppic/DEBIAN echo misc:Depends= >> debian/toppic.substvars echo misc:Pre-Depends= >> debian/toppic.substvars install -m0755 -d debian/.debhelper/toppic/dbgsym-root/DEBIAN dpkg-gencontrol -ptoppic -ldebian/changelog -Tdebian/toppic.substvars -cdebian/control -Pdebian/.debhelper/toppic/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=toppic-dbgsym "-DDepends=toppic (= \${binary:Version})" "-DDescription=debug symbols for toppic" "-DBuild-Ids=00adc919c9fb7f89c6abe59027c4ebfaa48add99 11e6c874abe22f634b41b1b98b822411257d749d 1ba3dedff5aba9715087f188147de3c2b8161e5d 24503775ec5283266456fc8eaa3ab8d81768ffb0 3528efd8968e4fb87572d62141eb601ee5f786c8 84f6b9ccedf70ea0cfe390444a6f6bb88d460581 a111bf19676994daf0d27579b72a4f4f6cbbca1c aa7de6d35e546f1747dfb42eee0c0ced156d8058 aebb23b7e726ca0065c656320378841cc311307c b04733f948a4288e3f71d1a333570fff8f9ac3d5 b95640d6b7c667efad28209b3453c10bc6a0ed6a e7afa9ec4f3f158d027c72f2c9b598f4fcf3e476 ecb8cda03f6725a514ba36216fd81d1861affa5d" -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/toppic-common/DEBIAN echo misc:Depends= >> debian/toppic-common.substvars echo misc:Pre-Depends= >> debian/toppic-common.substvars dpkg-gencontrol -ptoppic-common -ldebian/changelog -Tdebian/toppic-common.substvars -cdebian/control -Pdebian/toppic-common chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptoppic -ldebian/changelog -Tdebian/toppic.substvars -cdebian/control -Pdebian/toppic chmod 0644 -- debian/toppic-common/DEBIAN/control chmod 0644 -- debian/toppic/DEBIAN/control dh_md5sums -O--buildsystem=cmake install -m0755 -d debian/toppic-common/DEBIAN install -m0755 -d debian/toppic/DEBIAN cd debian/toppic >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/toppic-common >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/toppic/DEBIAN/md5sums install -m0755 -d debian/.debhelper/toppic/dbgsym-root/DEBIAN cd debian/.debhelper/toppic/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/toppic-common/DEBIAN/md5sums dh_builddeb -O--buildsystem=cmake dpkg-deb --root-owner-group --build debian/toppic .. dpkg-deb --root-owner-group --build debian/.debhelper/toppic/dbgsym-root .. dpkg-deb --root-owner-group --build debian/toppic-common .. dpkg-deb: building package 'toppic' in '../toppic_1.5.3+dfsg1-1_armhf.deb'. dpkg-deb: building package 'toppic-common' in '../toppic-common_1.5.3+dfsg1-1_all.deb'. dpkg-deb: building package 'toppic-dbgsym' in '../toppic-dbgsym_1.5.3+dfsg1-1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../toppic_1.5.3+dfsg1-1_armhf.buildinfo dpkg-genchanges --build=binary -O../toppic_1.5.3+dfsg1-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/28870 and its subdirectories I: Current time: Sat May 11 22:36:21 -12 2024 I: pbuilder-time-stamp: 1715510181 Sun May 12 10:43:25 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64z-armhf-rb.debian.net. Sun May 12 10:43:25 UTC 2024 I: Preparing to do remote build '2' on virt64z-armhf-rb.debian.net. Sun May 12 12:30:14 UTC 2024 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net. Sun May 12 12:30:17 UTC 2024 I: toppic_1.5.3+dfsg1-1_armhf.changes: Format: 1.8 Date: Sun, 30 Oct 2022 22:51:42 +0100 Source: toppic Binary: toppic toppic-common toppic-dbgsym Architecture: all armhf Version: 1.5.3+dfsg1-1 Distribution: unstable Urgency: low Maintainer: The Debichem Group Changed-By: Filippo Rusconi Description: toppic - Top-down proteoform identification and characterization (programs toppic-common - Top-down proteoform identification and characterization (common d Changes: toppic (1.5.3+dfsg1-1) unstable; urgency=low . * Repackaged source tree to actually remove doc/wiki. * Fixes to license names and small designations (Boost, MIT). * Also ship example files in toppic-common doc. Checksums-Sha1: 0e7e9f793bc16c3a55658a28bb0d9c2ea5abcd98 18754620 toppic-common_1.5.3+dfsg1-1_all.deb 50b4844d04628a251e1a790faaa2d13fbcc07f69 141731696 toppic-dbgsym_1.5.3+dfsg1-1_armhf.deb a0b50d59a33903e42279d7ee6f206a4b715cafa7 12496 toppic_1.5.3+dfsg1-1_armhf.buildinfo 93a1817b3e85b5f73c54b7c44654747f3e458e42 2942524 toppic_1.5.3+dfsg1-1_armhf.deb Checksums-Sha256: 5b9f837825031e99098adbcde59a76d7e58f60a99081a8ff6cdaac47dc2b83c7 18754620 toppic-common_1.5.3+dfsg1-1_all.deb 11815573234b29addd9a3f5dbbd4648b13346715557eb7dfbdbd4c27767449c9 141731696 toppic-dbgsym_1.5.3+dfsg1-1_armhf.deb 334a07972dc3a461489bd45e6b56b5731e8266d6aa27ca97f594aa5943882942 12496 toppic_1.5.3+dfsg1-1_armhf.buildinfo 628269cd8e679bf03ec8ab839047ff2a029b79cb8df51f7e75187cd0ef79d9c0 2942524 toppic_1.5.3+dfsg1-1_armhf.deb Files: 3295d191cf96b8e41749cb9c91950588 18754620 science optional toppic-common_1.5.3+dfsg1-1_all.deb 02b424edb2b47b571a134797caedb604 141731696 debug optional toppic-dbgsym_1.5.3+dfsg1-1_armhf.deb d208098767d49e3c00fffd47a9329dd3 12496 science optional toppic_1.5.3+dfsg1-1_armhf.buildinfo e130106bdbc2a6ffd62e71d1887e5ad7 2942524 science optional toppic_1.5.3+dfsg1-1_armhf.deb Sun May 12 12:30:20 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_1-3385.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.eSlkQwVI/toppic_1.5.3+dfsg1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.eSlkQwVI/toppic_1.5.3+dfsg1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.eSlkQwVI/toppic_1.5.3+dfsg1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.eSlkQwVI/b1/toppic_1.5.3+dfsg1-1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.eSlkQwVI/b2/toppic_1.5.3+dfsg1-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 2.530s) 2.530s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 2.156s) 2.156s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 2.913s CPU time consumed: 2.907s Sun May 12 12:45:06 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Sun May 12 12:45:06 UTC 2024 I: toppic from trixie built successfully and reproducibly on armhf. Sun May 12 12:45:11 UTC 2024 I: Submitting .buildinfo files to external archives: Sun May 12 12:45:11 UTC 2024 I: Submitting 16K b1/toppic_1.5.3+dfsg1-1_armhf.buildinfo.asc Sun May 12 12:45:17 UTC 2024 I: Submitting 16K b2/toppic_1.5.3+dfsg1-1_armhf.buildinfo.asc Sun May 12 12:45:37 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun May 12 12:45:37 UTC 2024 I: Done submitting .buildinfo files. Sun May 12 12:45:37 UTC 2024 I: Removing signed toppic_1.5.3+dfsg1-1_armhf.buildinfo.asc files: removed './b1/toppic_1.5.3+dfsg1-1_armhf.buildinfo.asc' removed './b2/toppic_1.5.3+dfsg1-1_armhf.buildinfo.asc'