Tue May 7 02:42:26 UTC 2024 I: starting to build squizz/trixie/armhf on jenkins on '2024-05-07 02:42' Tue May 7 02:42:26 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_25/6144/console.log Tue May 7 02:42:26 UTC 2024 I: Downloading source for trixie/squizz=0.99d+dfsg-3 --2024-05-07 02:42:26-- http://deb.debian.org/debian/pool/main/s/squizz/squizz_0.99d%2bdfsg-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2138 (2.1K) [text/prs.lines.tag] Saving to: ‘squizz_0.99d+dfsg-3.dsc’ 0K .. 100% 241M=0s 2024-05-07 02:42:26 (241 MB/s) - ‘squizz_0.99d+dfsg-3.dsc’ saved [2138/2138] Tue May 7 02:42:26 UTC 2024 I: squizz_0.99d+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: squizz Binary: squizz, libsquizz, libsquizz-dev Architecture: any Version: 0.99d+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille Homepage: ftp://ftp.pasteur.fr/pub/gensoft/projects/squizz/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/squizz Vcs-Git: https://salsa.debian.org/med-team/squizz.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: libsquizz deb libs optional arch=any libsquizz-dev deb libdevel optional arch=any squizz deb science optional arch=any Checksums-Sha1: 5c5f13f94c8e3c8959214d699c37e6bae0039221 638292 squizz_0.99d+dfsg.orig.tar.xz 5b27678687f939590b9a5deac3fe29581b01358f 5216 squizz_0.99d+dfsg-3.debian.tar.xz Checksums-Sha256: b1b264da5801b5488d5a1a4e3ff6b8a6c0ce396ab34fcedab61271cb5c20e481 638292 squizz_0.99d+dfsg.orig.tar.xz 69a9976bb28a9c0396c8551997c68be3a646bedbf34b9d49f17cfbe6dc016abd 5216 squizz_0.99d+dfsg-3.debian.tar.xz Files: 9ce5bc629c7420f6cd9de5cbfb3619be 638292 squizz_0.99d+dfsg.orig.tar.xz 0db90eaf6e05dfceb7849dbe29bac834 5216 squizz_0.99d+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl834ncUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafFJBA//RjirXTDZ3WASfu3nmSYqf2wzznWw J1rT1Q8X1Ujs+kmt6ZhaqvPzTUDH5hAg7TLO7Z81lTyLEYfvdL+15xeYUDoRg9FF onfUuVpA6jXpQ0TGrOC/NGiY9mXmoPOcQ2Amzo2Btj0bnISWlVQP6eH8bAgVf26b ARFimP/ewJxT7XRUnqiz/qtlxJJdaIDl4alScXR6UJ7IqDfkcKLfviiKguM0+PH8 ZeL+rQDSeRtVj7iJQ39gEqi6IlQD/OKpl7g9qtZQ+O110lcJXNEgtpA3Qx9LIDry GBvlHXQcNBEXfyNX6kWQm6vscKHk+ZFyxRK9sw2BmZ+5rVy3jCLvxeJ7WyVbm23Y stDk1u2kIsY9TXHLCaqsVS5Fl72lnq8Hdu13EllAYhqclX9lL6BKBHWWdFpaKFNT 5f1jS0q03+v1NCGdovrVIT0Kx06VvE/r9PskR/qtCHAW1X5paKnnMGxBNNmqPA3v RA46IphPvIrHSUPtinh2TuyA16r8SGFAhzKGQyzlQzGtOFfcu33sYBFVqwApJyfP csnk+Yz4tI0JnLDUrzFUoWgu+2MxyL73enngEP0Lw6GW8r3o9g8hVetvDHKJC9um 50CqCxXUaZUASUs0lc7ECLh/sXlWnHPIkFqD4t7lbsHi13FODqjZBmp9lOI6Bf6C OJNwTov4OZsEj+w= =qlUj -----END PGP SIGNATURE----- Tue May 7 02:42:26 UTC 2024 I: Checking whether the package is not for us Tue May 7 02:42:26 UTC 2024 I: Starting 1st build on remote node virt32c-armhf-rb.debian.net. Tue May 7 02:42:26 UTC 2024 I: Preparing to do remote build '1' on virt32c-armhf-rb.debian.net. Tue May 7 02:45:24 UTC 2024 I: Deleting $TMPDIR on virt32c-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 6 14:42:33 -12 2024 I: pbuilder-time-stamp: 1715049753 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [squizz_0.99d+dfsg-3.dsc] I: copying [./squizz_0.99d+dfsg.orig.tar.xz] I: copying [./squizz_0.99d+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Aug 15 13:26:15 2020 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./squizz_0.99d+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting squizz in squizz-0.99d+dfsg dpkg-source: info: unpacking squizz_0.99d+dfsg.orig.tar.xz dpkg-source: info: unpacking squizz_0.99d+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying correct-manpages-section.patch dpkg-source: info: applying disable-swissprot-test.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/26971/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='8e5fefa287e6407790b303e228acfe21' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='26971' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9FRsVako/pbuilderrc_s2Qb --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9FRsVako/b1 --logfile b1/build.log squizz_0.99d+dfsg-3.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32c 6.1.0-20-armmp-lpae #1 SMP Debian 6.1.85-1 (2024-04-11) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 6 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/26971/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19444 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 18.4 MB of archives. After unpacking 68.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-4 [1090 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40-8 [85.6 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.1-1 [1375 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b3 [598 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Fetched 18.4 MB in 1s (35.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19444 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_armhf.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_armhf.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-4_armhf.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40-8_armhf.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-1_armhf.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../22-libelf1t64_0.191-1+b1_armhf.deb ... Unpacking libelf1t64:armhf (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../24-libicu72_72.1-4+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-4+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b3_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_armhf.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Setting up libpipeline1:armhf (1.5.7-2) ... Setting up libicu72:armhf (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:armhf (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:armhf (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/squizz-0.99d+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../squizz_0.99d+dfsg-3_source.changes dpkg-buildpackage: info: source package squizz dpkg-buildpackage: info: source version 0.99d+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:14: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:14: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:14: the top level configure.ac:16: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete ./lib/autoconf/programs.m4:716: _AC_PROG_LEX is expanded from... ./lib/autoconf/programs.m4:709: AC_PROG_LEX is expanded from... aclocal.m4:668: AM_PROG_LEX is expanded from... configure.ac:16: the top level configure.ac:12: installing './compile' configure.ac:3: installing './missing' lib/Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for bison... no checking for byacc... no checking for flex... no checking for lex... no checking for pod2man... pod2man checking for pod2html... pod2html checking for err.h... yes checking for inttypes.h... (cached) yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for off_t... yes checking for size_t... yes checking size of size_t... 4 checking for uint64_t... yes checking for _LARGEFILE_SOURCE value needed for large files... no checking for strftime... yes checking for localtime_r... yes checking for strcasecmp... yes checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Makefile config.status: creating src/Makefile config.status: creating data/Makefile config.status: creating doc/Makefile config.status: creating test/Makefile config.status: creating lib/config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j3 make[1]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg' Making all in . make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg' Making all in lib make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/lib' make all-am make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/lib' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o sequence.lo sequence.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o align.lo align.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o sequence/embl.lo sequence/embl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sequence.c -fPIC -DPIC -o .libs/sequence.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c align.c -fPIC -DPIC -o .libs/align.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sequence/embl.c -fPIC -DPIC -o sequence/.libs/embl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c align.c -o align.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sequence.c -o sequence.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sequence/embl.c -o sequence/embl.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o sequence/embly.lo sequence/embly.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o sequence/embll.lo sequence/embll.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sequence/embly.c -fPIC -DPIC -o sequence/.libs/embly.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sequence/embll.c -fPIC -DPIC -o sequence/.libs/embll.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o sequence/fasta.lo sequence/fasta.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sequence/fasta.c -fPIC -DPIC -o sequence/.libs/fasta.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sequence/embly.c -o sequence/embly.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sequence/fasta.c -o sequence/fasta.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o sequence/fastay.lo sequence/fastay.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sequence/fastay.c -fPIC -DPIC -o sequence/.libs/fastay.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o sequence/fastal.lo sequence/fastal.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sequence/fastal.c -fPIC -DPIC -o sequence/.libs/fastal.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sequence/fastay.c -o sequence/fastay.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o sequence/genbank.lo sequence/genbank.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sequence/genbank.c -fPIC -DPIC -o sequence/.libs/genbank.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sequence/fastal.c -o sequence/fastal.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sequence/genbank.c -o sequence/genbank.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o sequence/genbanky.lo sequence/genbanky.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sequence/genbanky.c -fPIC -DPIC -o sequence/.libs/genbanky.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sequence/embll.c -o sequence/embll.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sequence/genbanky.c -o sequence/genbanky.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o sequence/genbankl.lo sequence/genbankl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c sequence/genbankl.c -fPIC -DPIC -o sequence/.libs/genbankl.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. 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-fstack-clash-protection -Wformat -Werror=format-security -c align/phylipsl.c -o align/phylipsl.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c align/parse.c -fPIC -DPIC -o align/.libs/parse.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c align/parse.c -o align/parse.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o align/phylip.lo align/phylip.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c align/phylip.c -fPIC -DPIC -o align/.libs/phylip.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c align/phylip.c -o align/phylip.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c align/stockl.c -o align/stockl.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o libbioseq.la -rpath /usr/lib/arm-linux-gnueabihf sequence.lo sequence/embl.lo sequence/embly.lo sequence/embll.lo sequence/fasta.lo sequence/fastay.lo sequence/fastal.lo sequence/genbank.lo sequence/genbanky.lo sequence/genbankl.lo sequence/gcg.lo sequence/gcgy.lo sequence/gcgl.lo sequence/gde.lo sequence/gdey.lo sequence/gdel.lo sequence/ig.lo sequence/igy.lo sequence/igl.lo sequence/nbrf.lo sequence/nbrfy.lo sequence/nbrfl.lo sequence/codata.lo sequence/codatay.lo sequence/codatal.lo sequence/raw.lo sequence/rawy.lo sequence/rawl.lo sequence/sprot.lo sequence/sproty.lo sequence/sprotl.lo sequence/parse.lo sequence/protein.lo sequence/utils.lo extern/text.lo extern/file.lo libtool: link: gcc -shared -fPIC -DPIC .libs/sequence.o sequence/.libs/embl.o sequence/.libs/embly.o sequence/.libs/embll.o sequence/.libs/fasta.o sequence/.libs/fastay.o sequence/.libs/fastal.o sequence/.libs/genbank.o sequence/.libs/genbanky.o sequence/.libs/genbankl.o sequence/.libs/gcg.o sequence/.libs/gcgy.o sequence/.libs/gcgl.o sequence/.libs/gde.o sequence/.libs/gdey.o sequence/.libs/gdel.o sequence/.libs/ig.o sequence/.libs/igy.o sequence/.libs/igl.o sequence/.libs/nbrf.o sequence/.libs/nbrfy.o sequence/.libs/nbrfl.o sequence/.libs/codata.o sequence/.libs/codatay.o sequence/.libs/codatal.o sequence/.libs/raw.o sequence/.libs/rawy.o sequence/.libs/rawl.o sequence/.libs/sprot.o sequence/.libs/sproty.o sequence/.libs/sprotl.o sequence/.libs/parse.o sequence/.libs/protein.o sequence/.libs/utils.o extern/.libs/text.o extern/.libs/file.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libbioseq.so.0 -o .libs/libbioseq.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libbioseq.so.0" && ln -s "libbioseq.so.0.0.0" "libbioseq.so.0") libtool: link: (cd ".libs" && rm -f "libbioseq.so" && ln -s "libbioseq.so.0.0.0" "libbioseq.so") libtool: link: ar cr .libs/libbioseq.a sequence.o sequence/embl.o sequence/embly.o sequence/embll.o sequence/fasta.o sequence/fastay.o sequence/fastal.o sequence/genbank.o sequence/genbanky.o sequence/genbankl.o sequence/gcg.o sequence/gcgy.o sequence/gcgl.o sequence/gde.o sequence/gdey.o sequence/gdel.o sequence/ig.o sequence/igy.o sequence/igl.o sequence/nbrf.o sequence/nbrfy.o sequence/nbrfl.o sequence/codata.o sequence/codatay.o sequence/codatal.o sequence/raw.o sequence/rawy.o sequence/rawl.o sequence/sprot.o sequence/sproty.o sequence/sprotl.o sequence/parse.o sequence/protein.o sequence/utils.o extern/text.o extern/file.o libtool: link: ranlib .libs/libbioseq.a libtool: link: ( cd ".libs" && rm -f "libbioseq.la" && ln -s "../libbioseq.la" "libbioseq.la" ) /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o libbioali.la -rpath /usr/lib/arm-linux-gnueabihf align.lo align/clustal.lo align/clustaly.lo align/clustall.lo align/fasta2.lo align/mega.lo align/megay.lo align/megal.lo align/msf.lo align/msfy.lo align/msfl.lo align/nexusi.lo align/nexusiy.lo align/nexusil.lo align/phylipi.lo align/phylipiy.lo align/phylipil.lo align/phylips.lo align/phylipsy.lo align/phylipsl.lo align/stock.lo align/stocky.lo align/stockl.lo align/parse.lo align/phylip.lo libtool: link: gcc -shared -fPIC -DPIC .libs/align.o align/.libs/clustal.o align/.libs/clustaly.o align/.libs/clustall.o align/.libs/fasta2.o align/.libs/mega.o align/.libs/megay.o align/.libs/megal.o align/.libs/msf.o align/.libs/msfy.o align/.libs/msfl.o align/.libs/nexusi.o align/.libs/nexusiy.o align/.libs/nexusil.o align/.libs/phylipi.o align/.libs/phylipiy.o align/.libs/phylipil.o align/.libs/phylips.o align/.libs/phylipsy.o align/.libs/phylipsl.o align/.libs/stock.o align/.libs/stocky.o align/.libs/stockl.o align/.libs/parse.o align/.libs/phylip.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libbioali.so.0 -o .libs/libbioali.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libbioali.so.0" && ln -s "libbioali.so.0.0.0" "libbioali.so.0") libtool: link: (cd ".libs" && rm -f "libbioali.so" && ln -s "libbioali.so.0.0.0" "libbioali.so") libtool: link: ar cr .libs/libbioali.a align.o align/clustal.o align/clustaly.o align/clustall.o align/fasta2.o align/mega.o align/megay.o align/megal.o align/msf.o align/msfy.o align/msfl.o align/nexusi.o align/nexusiy.o align/nexusil.o align/phylipi.o align/phylipiy.o align/phylipil.o align/phylips.o align/phylipsy.o align/phylipsl.o align/stock.o align/stocky.o align/stockl.o align/parse.o align/phylip.o libtool: link: ranlib .libs/libbioali.a libtool: link: ( cd ".libs" && rm -f "libbioali.la" && ln -s "../libbioali.la" "libbioali.la" ) make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/lib' make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/lib' Making all in src make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/src' gcc -DHAVE_CONFIG_H -I. -I../lib -I./../lib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o squizz.o squizz.c gcc -DHAVE_CONFIG_H -I. -I../lib -I./../lib -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o format.o format.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o squizz squizz.o format.o ../lib/libbioali.la ../lib/libbioseq.la libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/squizz squizz.o format.o ../lib/.libs/libbioali.so ../lib/.libs/libbioseq.so make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/src' Making all in data make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/data' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/data' Making all in doc make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/doc' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/doc' Making all in test make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/test' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/test' make[1]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg' dh_auto_test --no-parallel make -j1 check "TESTSUITEFLAGS=-j1 --verbose" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg' Making check in . make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg' Making check in lib make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/lib' make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/lib' Making check in src make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/src' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/src' Making check in data make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/data' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/data' Making check in doc make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/doc' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/doc' Making check in test make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/test' make check-TESTS make[4]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/test' make[5]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/test' PASS: squizz.sh PASS: fmtseq.sh PASS: fmtali.sh PASS: convseq.sh PASS: convali.sh PASS: embl.sh PASS: genbank.sh PASS: ig.sh PASS: nbrf.sh PASS: raw.sh PASS: align.sh PASS: clustal.sh PASS: mega.sh PASS: msf.sh PASS: nexusi.sh PASS: phylipi.sh PASS: phylips.sh PASS: stockholm.sh PASS: count.sh ============================================================================ Testsuite summary for squizz 0.99d ============================================================================ # TOTAL: 19 # PASS: 19 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[5]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/test' make[4]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/test' make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/test' make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg' make[1]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/squizz-0.99d\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg' Making install in . make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg' make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg' make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg' Making install in lib make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/lib' make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/lib' /usr/bin/mkdir -p '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/bash ../libtool --mode=install /usr/bin/install -c libbioseq.la libbioali.la '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libbioseq.so.0.0.0 /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbioseq.so.0.0.0 libtool: install: (cd /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libbioseq.so.0.0.0 libbioseq.so.0 || { rm -f libbioseq.so.0 && ln -s libbioseq.so.0.0.0 libbioseq.so.0; }; }) libtool: install: (cd /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libbioseq.so.0.0.0 libbioseq.so || { rm -f libbioseq.so && ln -s libbioseq.so.0.0.0 libbioseq.so; }; }) libtool: install: /usr/bin/install -c .libs/libbioseq.lai /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbioseq.la libtool: install: /usr/bin/install -c .libs/libbioali.so.0.0.0 /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbioali.so.0.0.0 libtool: install: (cd /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libbioali.so.0.0.0 libbioali.so.0 || { rm -f libbioali.so.0 && ln -s libbioali.so.0.0.0 libbioali.so.0; }; }) libtool: install: (cd /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libbioali.so.0.0.0 libbioali.so || { rm -f libbioali.so && ln -s libbioali.so.0.0.0 libbioali.so; }; }) libtool: install: /usr/bin/install -c .libs/libbioali.lai /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbioali.la libtool: install: /usr/bin/install -c .libs/libbioseq.a /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbioseq.a libtool: install: chmod 644 /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbioseq.a libtool: install: ranlib /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbioseq.a libtool: install: /usr/bin/install -c .libs/libbioali.a /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbioali.a libtool: install: chmod 644 /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbioali.a libtool: install: ranlib /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/arm-linux-gnueabihf/libbioali.a libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /usr/bin/mkdir -p '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz' /usr/bin/mkdir -p '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/align' /usr/bin/install -c -m 644 align/clustal.h align/fasta2.h align/mega.h align/msf.h align/nexusi.h align/phylipi.h align/phylips.h align/stock.h '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/align' /usr/bin/mkdir -p '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/sequence' /usr/bin/install -c -m 644 sequence/embl.h sequence/fasta.h sequence/genbank.h sequence/gcg.h sequence/gde.h sequence/ig.h sequence/nbrf.h sequence/codata.h sequence/raw.h sequence/sprot.h '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/sequence' /usr/bin/install -c -m 644 sequence.h align.h '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/.' make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/lib' make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/lib' Making install in src make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/src' make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/src' /usr/bin/mkdir -p '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c squizz '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/bin' libtool: warning: '../lib/libbioali.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: warning: '../lib/libbioseq.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/squizz /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/bin/squizz make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/src' make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/src' Making install in data make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/data' make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/data' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/data' make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/data' Making install in doc make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/doc' make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/doc' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/share/doc/squizz' /usr/bin/install -c -m 644 seqfmt.html alifmt.html '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/share/doc/squizz' /usr/bin/mkdir -p '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 'squizz.man' '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man1/squizz.1' /usr/bin/mkdir -p '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man5' /usr/bin/install -c -m 644 'seqfmt.man' '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man5/seqfmt.5' /usr/bin/install -c -m 644 'alifmt.man' '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man5/alifmt.5' make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/doc' make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/doc' Making install in test make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/test' make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/test' make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/test' make[1]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg' dh_install dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms debian/rules override_dh_missing make[1]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg' # Remove un-needed html and la files find debian/tmp -name '*.la' | xargs rm -rf find debian/tmp -name '*.html' | xargs rm -rf dh_missing make[1]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg' dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol sequence_new used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol gcg_crc used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol xstrdup used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol fasta_print used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sequence_free used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol fastay_check used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol fastay_parse used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol parse_stradd used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol text_strupd used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sequence_fixnam used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libsquizz-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'squizz' in '../squizz_0.99d+dfsg-3_armhf.deb'. dpkg-deb: building package 'libsquizz-dev' in '../libsquizz-dev_0.99d+dfsg-3_armhf.deb'. dpkg-deb: building package 'libsquizz' in '../libsquizz_0.99d+dfsg-3_armhf.deb'. dpkg-deb: building package 'squizz-dbgsym' in '../squizz-dbgsym_0.99d+dfsg-3_armhf.deb'. dpkg-deb: building package 'libsquizz-dbgsym' in '../libsquizz-dbgsym_0.99d+dfsg-3_armhf.deb'. dpkg-genbuildinfo --build=binary -O../squizz_0.99d+dfsg-3_armhf.buildinfo dpkg-genchanges --build=binary -O../squizz_0.99d+dfsg-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/26971 and its subdirectories I: Current time: Mon May 6 14:45:18 -12 2024 I: pbuilder-time-stamp: 1715049918 Tue May 7 02:45:27 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64z-armhf-rb.debian.net. Tue May 7 02:45:27 UTC 2024 I: Preparing to do remote build '2' on virt64z-armhf-rb.debian.net. Tue May 7 02:47:05 UTC 2024 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net. Tue May 7 02:47:08 UTC 2024 I: squizz_0.99d+dfsg-3_armhf.changes: Format: 1.8 Date: Sat, 15 Aug 2020 18:51:14 +0530 Source: squizz Binary: libsquizz libsquizz-dbgsym libsquizz-dev squizz squizz-dbgsym Architecture: armhf Version: 0.99d+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: libsquizz - Conversion libs used by squizz genetic sequence converter libsquizz-dev - development tools for squizz genetic sequence converter squizz - Converter for genetic sequences and alignments Changes: squizz (0.99d+dfsg-3) unstable; urgency=medium . * Team Upload. [ Steffen Möller ] * Update metadata with ref to conda . [ Nilesh Patra ] * Add autopkgtests * compat version: 13, standards version: 4.5.0 * Add "Rules-Requires-Root:no" * Fix whatis entry * Remove un-needed html and la files Checksums-Sha1: 1bfeef81a3f11bffc93ca217eeb99348514febe9 205380 libsquizz-dbgsym_0.99d+dfsg-3_armhf.deb 3ecf3e07c79078184daca9a544997ceeefe07b51 258396 libsquizz-dev_0.99d+dfsg-3_armhf.deb 970d99921729f74ae3022f77cda47c86e20bb4f8 251668 libsquizz_0.99d+dfsg-3_armhf.deb c6ec13f8c558c916aad059e108ee50c48e6a6877 11868 squizz-dbgsym_0.99d+dfsg-3_armhf.deb 7f416c4b01191e3f40392608c792ccdac2f7acff 5833 squizz_0.99d+dfsg-3_armhf.buildinfo 257b7a7ed556035e76e837f86c79d76946839bcd 30700 squizz_0.99d+dfsg-3_armhf.deb Checksums-Sha256: a7b64daf3aceae7580ad6a4119eeb25d8321caf2120667282b78408a03848440 205380 libsquizz-dbgsym_0.99d+dfsg-3_armhf.deb c695b62c4553f64cdcb17463ac2b5c6c5ca5ee01ed5fb15aa52dd1110046433e 258396 libsquizz-dev_0.99d+dfsg-3_armhf.deb 75a69086b9816e1724b674a2eb032be0f204e6d9b13b95380fb2a8da08e9e2db 251668 libsquizz_0.99d+dfsg-3_armhf.deb 3392f4219f1d4785e4a3a011583616f8d620779551d8bb884b8e926fedd2c644 11868 squizz-dbgsym_0.99d+dfsg-3_armhf.deb 859653deadb53310fc261b60e55f458012ea553844cfc4c8f950b0db6246eefb 5833 squizz_0.99d+dfsg-3_armhf.buildinfo 923662ee276810e34ad2ec4bd414f80324b1301bb0364ceb14f38e9f3f7de6f1 30700 squizz_0.99d+dfsg-3_armhf.deb Files: e9e8dcfd22758f829ab84e4e9d282405 205380 debug optional libsquizz-dbgsym_0.99d+dfsg-3_armhf.deb 09b6d7fd59cb5bc52a8350631468e291 258396 libdevel optional libsquizz-dev_0.99d+dfsg-3_armhf.deb 515d9173a34fc255851152a72c9ee163 251668 libs optional libsquizz_0.99d+dfsg-3_armhf.deb 1dd288d1c8e8747b19268a9fd739f38e 11868 debug optional squizz-dbgsym_0.99d+dfsg-3_armhf.deb 04231dabc40222cb02dc80ab5b7f03b0 5833 science optional squizz_0.99d+dfsg-3_armhf.buildinfo 704dfb14c9e4ae89a78e859c0a8fa58d 30700 science optional squizz_0.99d+dfsg-3_armhf.deb Tue May 7 02:47:09 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_25-6144.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.9FRsVako/squizz_0.99d+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.9FRsVako/squizz_0.99d+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.9FRsVako/squizz_0.99d+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.9FRsVako/b1/squizz_0.99d+dfsg-3_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.9FRsVako/b2/squizz_0.99d+dfsg-3_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.372s) 0.372s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.026s) 0.026s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 716ms CPU time consumed: 717ms Tue May 7 02:47:10 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Tue May 7 02:47:10 UTC 2024 I: squizz from trixie built successfully and reproducibly on armhf. Tue May 7 02:47:11 UTC 2024 I: Submitting .buildinfo files to external archives: Tue May 7 02:47:11 UTC 2024 I: Submitting 8.0K b1/squizz_0.99d+dfsg-3_armhf.buildinfo.asc Tue May 7 02:47:13 UTC 2024 I: Submitting 8.0K b2/squizz_0.99d+dfsg-3_armhf.buildinfo.asc Tue May 7 02:47:14 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue May 7 02:47:14 UTC 2024 I: Done submitting .buildinfo files. Tue May 7 02:47:14 UTC 2024 I: Removing signed squizz_0.99d+dfsg-3_armhf.buildinfo.asc files: removed './b1/squizz_0.99d+dfsg-3_armhf.buildinfo.asc' removed './b2/squizz_0.99d+dfsg-3_armhf.buildinfo.asc'