Thu Nov 28 21:58:01 UTC 2024 I: starting to build smrtanalysis/trixie/armhf on jenkins on '2024-11-28 21:57' Thu Nov 28 21:58:01 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_32/20410/console.log Thu Nov 28 21:58:01 UTC 2024 I: Downloading source for trixie/smrtanalysis=0~20210112 --2024-11-28 21:58:01-- http://deb.debian.org/debian/pool/main/s/smrtanalysis/smrtanalysis_0%7e20210112.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1918 (1.9K) [text/prs.lines.tag] Saving to: ‘smrtanalysis_0~20210112.dsc’ 0K . 100% 238M=0s 2024-11-28 21:58:01 (238 MB/s) - ‘smrtanalysis_0~20210112.dsc’ saved [1918/1918] Thu Nov 28 21:58:02 UTC 2024 I: smrtanalysis_0~20210112.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (native) Source: smrtanalysis Binary: smrtanalysis, smrtanalysis-dev Architecture: any all Version: 0~20210112 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://www.pacb.com/products-and-services/analytical-software/smrt-analysis/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/smrtanalysis Vcs-Git: https://salsa.debian.org/med-team/smrtanalysis.git Build-Depends: debhelper-compat (= 13), python3-pbcore, python3-pbcommand, python3-pbconsensuscore, libpbseq-dev, libpbbam-dev Package-List: smrtanalysis deb science optional arch=all smrtanalysis-dev deb libdevel optional arch=any Checksums-Sha1: 5591fefa59b9b66ec737c8c8e633101489fa2a47 2812 smrtanalysis_0~20210112.tar.xz Checksums-Sha256: f185e165fce62c96d9b7bc57edb968074c6e11d2d07cacfb027d721c8882655b 2812 smrtanalysis_0~20210112.tar.xz Files: adfaca989cbd6018e4893bc6f4784abe 2812 smrtanalysis_0~20210112.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmIJBo8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGYyg/9G6Oalfmn+qk0+cpjh8RmGlu4anqnTZH5 +qsVOe2XHe717XsIeaCxNQnTHlzppIu3BDb7/n6u077alfRkgG72isKU3sImkzhS 8iyKwzaway2EQLS8U1P2IRhXrwxX4ylpN5Pcz0R8a9dNxRjhvgdUypm04+UTxKI4 u5HOVBt1YQIEJGgOdiIVs4niCYJFwgbq2PbUILVE6gD8L5RZCaSsO6Eb6z5R+5oj folMMDP2Sl5yObuxq7b5daC6rnzFCElLAZwdNbyCEL1ZAN2N35WfxQcQbFEKFzjO 9517u8qpO3OXxKFZXUny95rwTLHCyibj9KNlyX1BJ9Y5jTo7QlYoIrE9lrp74dpx tqj5cI3TziV0CaCbZeN/Nnr7mTd67Cb6D/ZOvdSXIJBx8LJtuXMrEvSxT4qXR7uV DH0rs4m8EBTTvyHd/CB09cPKZVqxQNrMf/V7XQk3KdA3w53i6Vje8b0Vuk5UPVYe SdHLLSUyJXdflRpiikDKIWGHWoYH6n8c+4e3aMFiVtkJ080uqh2NvkfT4ygWUDNd kvyMPb9vtl7k1E3+CnClzyVnkZEG13y/Qkl/9TTrazIrHr0aicCQSp5swOfxOjxA rF1uLTXpSoMEj/oXPbwcmxPmQP9pByWMeALo9J/O31xT5JC0dXW1yhpax1AJZiYs tgIOC7brAe4= =9W86 -----END PGP SIGNATURE----- Thu Nov 28 21:58:02 UTC 2024 I: Checking whether the package is not for us Thu Nov 28 21:58:02 UTC 2024 I: Starting 1st build on remote node virt64c-armhf-rb.debian.net. Thu Nov 28 21:58:02 UTC 2024 I: Preparing to do remote build '1' on virt64c-armhf-rb.debian.net. Thu Nov 28 21:58:41 UTC 2024 I: Deleting $TMPDIR on virt64c-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 28 09:58:08 -12 2024 I: pbuilder-time-stamp: 1732831088 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [smrtanalysis_0~20210112.dsc] I: copying [./smrtanalysis_0~20210112.tar.xz] I: Extracting source gpgv: Signature made Sun Feb 13 13:24:31 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./smrtanalysis_0~20210112.dsc: no acceptable signature found dpkg-source: info: extracting smrtanalysis in smrtanalysis-0~20210112 dpkg-source: info: unpacking smrtanalysis_0~20210112.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/17726/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='beb0d5843330433ea6d939fde97d4c85' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='17726' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YDlemHrF/pbuilderrc_cGh5 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YDlemHrF/b1 --logfile b1/build.log smrtanalysis_0~20210112.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64c 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/17726/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3-pbcore, python3-pbcommand, python3-pbconsensuscore, libpbseq-dev, libpbbam-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19686 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3-pbcore; however: Package python3-pbcore is not installed. pbuilder-satisfydepends-dummy depends on python3-pbcommand; however: Package python3-pbcommand is not installed. pbuilder-satisfydepends-dummy depends on python3-pbconsensuscore; however: Package python3-pbconsensuscore is not installed. pbuilder-satisfydepends-dummy depends on libpbseq-dev; however: Package libpbseq-dev is not installed. pbuilder-satisfydepends-dummy depends on libpbbam-dev; however: Package libpbbam-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-autocommand{a} python3-avro{a} python3-biopython{a} python3-cairo{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-freetype{a} python3-idna{a} python3-inflect{a} python3-iso8601{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pbcommand{a} python3-pbcore{a} python3-pil{a} python3-pkg-resources{a} python3-pysam{a} python3-reportlab{a} python3-requests{a} python3-rlpycairo{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-h5py python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 139 newly installed, 0 to remove and 0 not upgraded. Need to get 66.3 MB of archives. After unpacking 234 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: python3-pbconsensuscore which is a virtual package and is not provided by any available package Depends: libpbseq-dev which is a virtual package and is not provided by any available package Depends: libpbbam-dev which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-autocommand{a} python3-avro{a} python3-biopython{a} python3-cairo{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-freetype{a} python3-idna{a} python3-inflect{a} python3-iso8601{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pbcommand{a} python3-pbcore{a} python3-pil{a} python3-pkg-resources{a} python3-pysam{a} python3-reportlab{a} python3-requests{a} python3-rlpycairo{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-h5py python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 139 newly installed, 0 to remove and 0 not upgraded. Need to get 66.3 MB of archives. After unpacking 234 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/17726 and its subdirectories Thu Nov 28 21:58:44 UTC 2024 W: No second build log, what happened? Thu Nov 28 21:58:44 UTC 2024 W: Downloading the build dependencies failed Thu Nov 28 21:58:44 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Thu Nov 28 21:58:44 UTC 2024 W: Network problems are automatically rescheduled after some hours.