Tue Mar 26 14:17:36 UTC 2024 I: starting to build seqtk/trixie/armhf on jenkins on '2024-03-26 14:17' Tue Mar 26 14:17:36 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_35/1277/console.log Tue Mar 26 14:17:36 UTC 2024 I: Downloading source for trixie/seqtk=1.4-2 --2024-03-26 14:17:36-- http://deb.debian.org/debian/pool/main/s/seqtk/seqtk_1.4-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1951 (1.9K) [text/prs.lines.tag] Saving to: ‘seqtk_1.4-2.dsc’ 0K . 100% 232M=0s 2024-03-26 14:17:36 (232 MB/s) - ‘seqtk_1.4-2.dsc’ saved [1951/1951] Tue Mar 26 14:17:36 UTC 2024 I: seqtk_1.4-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: seqtk Binary: seqtk Architecture: any Version: 1.4-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Brad Chapman Homepage: https://github.com/lh3/seqtk Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/seqtk Vcs-Git: https://salsa.debian.org/med-team/seqtk.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev Package-List: seqtk deb science optional arch=any Checksums-Sha1: 7ad81a39447d1859afd8507ed176bfcfc6b106e4 23748 seqtk_1.4.orig.tar.gz bd2a016d9a2256c5d7dc0a74f53cbcf3799c3078 4516 seqtk_1.4-2.debian.tar.xz Checksums-Sha256: d124604ec24f29ed14ce127426ab90e0f3a2c0280c80d1a3ff8b1c09feede19c 23748 seqtk_1.4.orig.tar.gz db4e7877ef4b3af463a63a254d8afd07a909941257e2164f75ebd84a6a05fa6f 4516 seqtk_1.4-2.debian.tar.xz Files: 8fd02aee6308146c0595edd0af0e19fb 23748 seqtk_1.4.orig.tar.gz d1f12b1efd7ad8d9348a6e1928f746f2 4516 seqtk_1.4-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmVM84YRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGJNA/9GC0g3eNY5oHTWgpdfFSqXzrqEA0PjL1k 1QF+cV35HlYsMph87psKCYw5uleXzDDLntaM67T79JcYuW1Bvgj+wlZfIe5QrY4X B1NG46iCPKSVCdFUvwvzS12AsQunBNFOw/dt1cqB7ZjQNeaBKI/lGC6t5j3U4Lt6 e7c42cRK/+x3ftYUAWZajCIb7vORc25sppXY4/9mJPkoLvw18Du/fX1W3TY2vBCe gjEXFtWtLTnFDbrwD0sXiX1Pn6m4TrS+2u8VQ+ttRWQcyt89F7ttH+0xTaEHn9/A xgZTx5VwVw1dsCOo11Rt0hSpgLXkiMK5vMk+Osk6k1Oj6ej0pyIRk/MA1U1mJZQ0 2J0UjXYKmBbJ9HCu4b+NY47D9ZmsO7UCOI6cUSrh9nkrCK+E3cSjiRvcUvDTDo8K 1HApUOV2MBRH8/oQJuEF8iAF3gLoZv034B8GPuCeixvmwVHfKEUuDM1CrDoVaM4C p/3kOtbvAEacYy/Ykd71B5G4C10kJ1XvzNi27DLrKgJs4+Re1pu88yerXpAR7nqP li1doOZp4brQyhGK2U8qFAcF9fL1Q0Awfl8i9y/Q5lIY+S4o5sZRpEd1HVb2H+Xc dXCi5jqIc4mgloxGcDWFTQ/My8f0UuW6sjQIz7C9DU2ulfevFDpa5eTagXzwQdEK 1djlihc3Jwc= =dkM7 -----END PGP SIGNATURE----- Tue Mar 26 14:17:36 UTC 2024 I: Checking whether the package is not for us Tue Mar 26 14:17:36 UTC 2024 I: Starting 1st build on remote node cbxi4pro0-armhf-rb.debian.net. Tue Mar 26 14:17:36 UTC 2024 I: Preparing to do remote build '1' on cbxi4pro0-armhf-rb.debian.net. Tue Mar 26 14:21:25 UTC 2024 I: Deleting $TMPDIR on cbxi4pro0-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Mar 26 02:17:48 -12 2024 I: pbuilder-time-stamp: 1711462668 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqtk_1.4-2.dsc] I: copying [./seqtk_1.4.orig.tar.gz] I: copying [./seqtk_1.4-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Nov 9 14:58:14 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./seqtk_1.4-2.dsc: no acceptable signature found dpkg-source: info: extracting seqtk in seqtk-1.4 dpkg-source: info: unpacking seqtk_1.4.orig.tar.gz dpkg-source: info: unpacking seqtk_1.4-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/14159/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='22ce512cff3b4fd59631ce451f5b9de5' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='14159' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.uWdhCRhv/pbuilderrc_UgTK --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.uWdhCRhv/b1 --logfile b1/build.log seqtk_1.4-2.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux cbxi4pro0 6.1.0-18-armmp #1 SMP Debian 6.1.76-1 (2024-02-01) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 24 11:27 /bin -> usr/bin I: user script /srv/workspace/pbuilder/14159/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19577 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 19.2 MB of archives. After unpacking 69.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-2+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic1 armhf 1:5.45-2+b1 [97.9 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-2+b1 [42.2 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-3 [1088 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.39.3-6 [81.2 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-1+b2 [33.4 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.0-3 [1367 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.14.1 [85.6 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main armhf libelf1 armhf 0.190-1+b1 [171 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1 [101 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b2 [599 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf debhelper all 13.14.1 [890 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg-3+b1 [904 kB] Fetched 19.2 MB in 2s (10.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19577 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../02-libmagic1_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic1:armhf (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-2+b1_armhf.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_armhf.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-3_armhf.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.39.3-6_armhf.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.7-1+b2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1+b2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.0-3_armhf.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.14.1_all.deb ... Unpacking libdebhelper-perl (13.14.1) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../22-libelf1_0.190-1+b1_armhf.deb ... Unpacking libelf1:armhf (0.190-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../24-libicu72_72.1-4+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-4+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_armhf.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.14.1_all.deb ... Unpacking debhelper (13.14.1) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../30-zlib1g-dev_1%3a1.3.dfsg-3+b1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.3.dfsg-3+b1) ... Setting up libpipeline1:armhf (1.5.7-1+b2) ... Setting up libicu72:armhf (72.1-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.14.1) ... Setting up libmagic1:armhf (1:5.45-2+b1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg-3+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libelf1:armhf (0.190-1+b1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.14.1) ... Processing triggers for libc-bin (2.37-15) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/seqtk-1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqtk_1.4-2_source.changes dpkg-buildpackage: info: source package seqtk dpkg-buildpackage: info: source version 1.4-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Lance Lin dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_auto_clean make -j3 clean make[1]: Entering directory '/build/reproducible-path/seqtk-1.4' rm -fr gmon.out *.o ext/*.o a.out seqtk trimadap *~ *.a *.dSYM session* make[1]: Leaving directory '/build/reproducible-path/seqtk-1.4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/seqtk-1.4' dh_auto_build -- CFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/seqtk-1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security" make -j3 "INSTALL=install --strip-program=true" "CFLAGS=-g -O2 -ffile-prefix-map=/build/reproducible-path/seqtk-1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security" make[2]: Entering directory '/build/reproducible-path/seqtk-1.4' gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/seqtk-1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security seqtk.c -o seqtk -lz -lm -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 seqtk.c: In function 'stk_subseq': seqtk.c:691:71: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 691 | fprintf(stderr, "[subseq] %s: %d >= %ld\n", seq->name.s, beg, seq->seq.l); | ~~^ ~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d seqtk.c: In function 'stk_mergefa': seqtk.c:787:74: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 787 | fprintf(stderr, "[%s] Unequal sequence length: %ld != %ld\n", __func__, seq[0]->seq.l, seq[1]->seq.l); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d seqtk.c:787:81: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 787 | fprintf(stderr, "[%s] Unequal sequence length: %ld != %ld\n", __func__, seq[0]->seq.l, seq[1]->seq.l); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d seqtk.c: In function 'stk_famask': seqtk.c:870:74: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 870 | fprintf(stderr, "[%s] Unequal sequence length: %ld != %ld\n", __func__, seq[0]->seq.l, seq[1]->seq.l); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d seqtk.c:870:81: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 870 | fprintf(stderr, "[%s] Unequal sequence length: %ld != %ld\n", __func__, seq[0]->seq.l, seq[1]->seq.l); | ~~^ ~~~~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d seqtk.c: In function 'stk_kfreq': seqtk.c:1789:31: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 1789 | printf("%s\t%ld\t%c\t%d\t%d\n", ks->name.s, ks->seq.l, "+-"[which], cnt_nei[which], cnt[which]); | ~~^ ~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d seqtk.c: In function 'stk_telo': seqtk.c:1987:42: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat=] 1987 | printf("%s\t0\t%ld\t%ld\n", seq->name.s, max_i + 1, seq->seq.l); | ~~^ ~~~~~~~~~ | | | | long int int | %d seqtk.c:1987:47: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 1987 | printf("%s\t0\t%ld\t%ld\n", seq->name.s, max_i + 1, seq->seq.l); | ~~^ ~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d seqtk.c:2004:39: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'ssize_t' {aka 'int'} [-Wformat=] 2004 | printf("%s\t%ld\t%ld\t%ld\n", seq->name.s, max_i, seq->seq.l, seq->seq.l); | ~~^ ~~~~~ | | | | long int ssize_t {aka int} | %d seqtk.c:2004:44: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 2004 | printf("%s\t%ld\t%ld\t%ld\n", seq->name.s, max_i, seq->seq.l, seq->seq.l); | ~~^ ~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d seqtk.c:2004:49: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] 2004 | printf("%s\t%ld\t%ld\t%ld\n", seq->name.s, max_i, seq->seq.l, seq->seq.l); | ~~^ ~~~~~~~~~~ | | | | long int size_t {aka unsigned int} | %d make[2]: Leaving directory '/build/reproducible-path/seqtk-1.4' make[1]: Leaving directory '/build/reproducible-path/seqtk-1.4' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/seqtk-1.4' echo "Ignore broken Makefile" Ignore broken Makefile make[1]: Leaving directory '/build/reproducible-path/seqtk-1.4' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'seqtk' in '../seqtk_1.4-2_armhf.deb'. dpkg-deb: building package 'seqtk-dbgsym' in '../seqtk-dbgsym_1.4-2_armhf.deb'. dpkg-genbuildinfo --build=binary -O../seqtk_1.4-2_armhf.buildinfo dpkg-genchanges --build=binary -O../seqtk_1.4-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/14159 and its subdirectories I: Current time: Tue Mar 26 02:21:20 -12 2024 I: pbuilder-time-stamp: 1711462880 Tue Mar 26 14:21:28 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64b-armhf-rb.debian.net. Tue Mar 26 14:21:28 UTC 2024 I: Preparing to do remote build '2' on virt64b-armhf-rb.debian.net. Tue Mar 26 14:23:44 UTC 2024 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net. Tue Mar 26 14:23:46 UTC 2024 I: seqtk_1.4-2_armhf.changes: Format: 1.8 Date: Thu, 09 Nov 2023 20:17:13 +0700 Source: seqtk Binary: seqtk seqtk-dbgsym Architecture: armhf Version: 1.4-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Lance Lin Description: seqtk - Fast and lightweight tool for processing sequences in the FASTA o Changes: seqtk (1.4-2) unstable; urgency=medium . * Team upload. * d/patches/hardening.patch: Fix blhc in pipeline by adding CPPFLAGS Checksums-Sha1: 0a1c27d6aa3687cd727c6a374da8842dae72edff 78620 seqtk-dbgsym_1.4-2_armhf.deb 038b933df430074703f05fe26b23f0dc888b0070 5250 seqtk_1.4-2_armhf.buildinfo c1c4f84fc54a6356a51e3cc01b204b32fe30661f 32796 seqtk_1.4-2_armhf.deb Checksums-Sha256: 9cb62d5df2792af3a31d2c42eabe9438433ebdffdbe9d86ebd48c166cd120245 78620 seqtk-dbgsym_1.4-2_armhf.deb 66bf50a65221b14937e1aa273ecd6177a8582b2dcc9323b4c209e5460bf0eb39 5250 seqtk_1.4-2_armhf.buildinfo 1841e208c2e8422c46eb8002108ffdf303c064a5c1e0c585692e6c733da780be 32796 seqtk_1.4-2_armhf.deb Files: b06397f9840167be7bc0314c550f01b0 78620 debug optional seqtk-dbgsym_1.4-2_armhf.deb a37ca37ede5abc06c66d0af471b00938 5250 science optional seqtk_1.4-2_armhf.buildinfo 8a29e186e8c3c2a63879695393480fd4 32796 science optional seqtk_1.4-2_armhf.deb Tue Mar 26 14:23:48 UTC 2024 I: diffoscope 261 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_35-1277.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.uWdhCRhv/seqtk_1.4-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.uWdhCRhv/seqtk_1.4-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.uWdhCRhv/seqtk_1.4-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.uWdhCRhv/b1/seqtk_1.4-2_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.uWdhCRhv/b2/seqtk_1.4-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.348s) 0.348s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.016s) 0.016s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 694ms CPU time consumed: 685ms Tue Mar 26 14:23:49 UTC 2024 I: diffoscope 261 found no differences in the changes files, and a .buildinfo file also exists. Tue Mar 26 14:23:49 UTC 2024 I: seqtk from trixie built successfully and reproducibly on armhf. Tue Mar 26 14:23:50 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Mar 26 14:23:50 UTC 2024 I: Submitting 8.0K b1/seqtk_1.4-2_armhf.buildinfo.asc Tue Mar 26 14:23:52 UTC 2024 I: Submitting 8.0K b2/seqtk_1.4-2_armhf.buildinfo.asc Tue Mar 26 14:23:52 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Mar 26 14:23:52 UTC 2024 I: Done submitting .buildinfo files. Tue Mar 26 14:23:52 UTC 2024 I: Removing signed seqtk_1.4-2_armhf.buildinfo.asc files: removed './b1/seqtk_1.4-2_armhf.buildinfo.asc' removed './b2/seqtk_1.4-2_armhf.buildinfo.asc'