Mon Jan 13 16:05:09 UTC 2025 I: starting to build seqkit/trixie/armhf on jenkins on '2025-01-13 16:04'
Mon Jan 13 16:05:09 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_9/11662/console.log
Mon Jan 13 16:05:09 UTC 2025 I: Downloading source for trixie/seqkit=2.9.0+ds-1
--2025-01-13 16:05:09-- http://deb.debian.org/debian/pool/main/s/seqkit/seqkit_2.9.0%2bds-1.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 3288 (3.2K) [text/prs.lines.tag]
Saving to: ‘seqkit_2.9.0+ds-1.dsc’
0K ... 100% 375M=0s
2025-01-13 16:05:09 (375 MB/s) - ‘seqkit_2.9.0+ds-1.dsc’ saved [3288/3288]
Mon Jan 13 16:05:09 UTC 2025 I: seqkit_2.9.0+ds-1.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: seqkit
Binary: seqkit, seqkit-examples
Architecture: any all
Version: 2.9.0+ds-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Nilesh Patra <nilesh@debian.org>
Homepage: https://github.com/shenwei356/seqkit
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/seqkit
Vcs-Git: https://salsa.debian.org/med-team/seqkit.git
Testsuite: autopkgtest
Testsuite-Triggers: openssl, ssshtest
Build-Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-bsipos-thist-dev, golang-github-cespare-xxhash-dev, golang-github-cznic-sortutil-dev, golang-github-dsnet-compress-dev, golang-github-dustin-go-humanize-dev, golang-github-elliotwutingfeng-asciiset-dev, golang-github-fsnotify-fsnotify-dev, golang-github-logrusorgru-aurora-dev, golang-github-mattn-go-colorable-dev, golang-github-mattn-go-isatty-dev, golang-github-mitchellh-go-homedir-dev, golang-github-op-go-logging-dev, golang-github-shenwei356-bio-dev (>= 0.13.3), golang-github-shenwei356-bwt-dev (>= 0.5.1), golang-github-shenwei356-stable-dev, golang-github-spf13-cobra-dev, golang-github-iafan-cwalk-dev, golang-github-smallfish-simpleyaml-dev, golang-github-twotwotwo-sorts-dev, golang-github-klauspost-compress-dev, golang-github-klauspost-pgzip-dev, golang-github-pkg-errors-dev, golang-github-shenwei356-breader-dev, golang-github-shenwei356-util-dev, golang-github-shenwei356-xopen-dev (>= 0.0~git20231203.5ad79ea), golang-github-ulikunitz-xz-dev, golang-github-vbauerster-mpb-dev (>= 8.8.3-1~), samtools
Package-List:
seqkit deb science optional arch=any
seqkit-examples deb science optional arch=all
Checksums-Sha1:
1eb2f52c965ec709cab9dc488e0bf6d5440242a0 16637416 seqkit_2.9.0+ds.orig.tar.xz
94916f1d872e87fbd7cc9eff4c4adbe717f8f776 10775960 seqkit_2.9.0+ds-1.debian.tar.xz
Checksums-Sha256:
71ea80df0998c5551d751ece94c84024bec2edbd8f56ac1d5908914ed4710a4f 16637416 seqkit_2.9.0+ds.orig.tar.xz
db029e1cd27002b93a33da6814cd67a5c858517716be714a6fe2a04b41d6ec2a 10775960 seqkit_2.9.0+ds-1.debian.tar.xz
Files:
3b7f4adf97dde6b1d46eb64e8ebde17d 16637416 seqkit_2.9.0+ds.orig.tar.xz
7b44a01d24f59e163047529fae89c73e 10775960 seqkit_2.9.0+ds-1.debian.tar.xz
Go-Import-Path: github.com/shenwei356/seqkit
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Mon Jan 13 16:05:09 UTC 2025 I: Checking whether the package is not for us
Mon Jan 13 16:05:09 UTC 2025 I: Starting 1st build on remote node virt32a-armhf-rb.debian.net.
Mon Jan 13 16:05:09 UTC 2025 I: Preparing to do remote build '1' on virt32a-armhf-rb.debian.net.
Mon Jan 13 16:20:30 UTC 2025 I: Deleting $TMPDIR on virt32a-armhf-rb.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Mon Jan 13 04:05:16 -12 2025
I: pbuilder-time-stamp: 1736784316
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [seqkit_2.9.0+ds-1.dsc]
I: copying [./seqkit_2.9.0+ds.orig.tar.xz]
I: copying [./seqkit_2.9.0+ds-1.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./seqkit_2.9.0+ds-1.dsc: unsupported subcommand
dpkg-source: info: extracting seqkit in seqkit-2.9.0+ds
dpkg-source: info: unpacking seqkit_2.9.0+ds.orig.tar.xz
dpkg-source: info: unpacking seqkit_2.9.0+ds-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use-upstream-go-logger.patch
dpkg-source: info: applying use-original-thist.patch
dpkg-source: info: applying use-new-mpb.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/10231/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='armhf'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='armhf'
IFS='
'
INVOCATION_ID='002d0ae6cc494d34b8be167f783826d2'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='10231'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5Gd79ZRM/pbuilderrc_t0oW --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5Gd79ZRM/b1 --logfile b1/build.log seqkit_2.9.0+ds-1.dsc'
SUDO_GID='113'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://10.0.0.15:3142/'
I: uname -a
Linux virt32a 6.1.0-29-armmp-lpae #1 SMP Debian 6.1.123-1 (2025-01-02) armv7l GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/10231/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-bsipos-thist-dev, golang-github-cespare-xxhash-dev, golang-github-cznic-sortutil-dev, golang-github-dsnet-compress-dev, golang-github-dustin-go-humanize-dev, golang-github-elliotwutingfeng-asciiset-dev, golang-github-fsnotify-fsnotify-dev, golang-github-logrusorgru-aurora-dev, golang-github-mattn-go-colorable-dev, golang-github-mattn-go-isatty-dev, golang-github-mitchellh-go-homedir-dev, golang-github-op-go-logging-dev, golang-github-shenwei356-bio-dev (>= 0.13.3), golang-github-shenwei356-bwt-dev (>= 0.5.1), golang-github-shenwei356-stable-dev, golang-github-spf13-cobra-dev, golang-github-iafan-cwalk-dev, golang-github-smallfish-simpleyaml-dev, golang-github-twotwotwo-sorts-dev, golang-github-klauspost-compress-dev, golang-github-klauspost-pgzip-dev, golang-github-pkg-errors-dev, golang-github-shenwei356-breader-dev, golang-github-shenwei356-util-dev, golang-github-shenwei356-xopen-dev (>= 0.0~git20231203.5ad79ea), golang-github-ulikunitz-xz-dev, golang-github-vbauerster-mpb-dev (>= 8.8.3-1~), samtools
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19567 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-golang; however:
Package dh-golang is not installed.
pbuilder-satisfydepends-dummy depends on golang-any; however:
Package golang-any is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-biogo-biogo-dev; however:
Package golang-github-biogo-biogo-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-biogo-hts-dev; however:
Package golang-github-biogo-hts-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-bsipos-thist-dev; however:
Package golang-github-bsipos-thist-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-cespare-xxhash-dev; however:
Package golang-github-cespare-xxhash-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-cznic-sortutil-dev; however:
Package golang-github-cznic-sortutil-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-dsnet-compress-dev; however:
Package golang-github-dsnet-compress-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-dustin-go-humanize-dev; however:
Package golang-github-dustin-go-humanize-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-elliotwutingfeng-asciiset-dev; however:
Package golang-github-elliotwutingfeng-asciiset-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-fsnotify-fsnotify-dev; however:
Package golang-github-fsnotify-fsnotify-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-logrusorgru-aurora-dev; however:
Package golang-github-logrusorgru-aurora-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-mattn-go-colorable-dev; however:
Package golang-github-mattn-go-colorable-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-mattn-go-isatty-dev; however:
Package golang-github-mattn-go-isatty-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-mitchellh-go-homedir-dev; however:
Package golang-github-mitchellh-go-homedir-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-op-go-logging-dev; however:
Package golang-github-op-go-logging-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-shenwei356-bio-dev (>= 0.13.3); however:
Package golang-github-shenwei356-bio-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-shenwei356-bwt-dev (>= 0.5.1); however:
Package golang-github-shenwei356-bwt-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-shenwei356-stable-dev; however:
Package golang-github-shenwei356-stable-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-spf13-cobra-dev; however:
Package golang-github-spf13-cobra-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-iafan-cwalk-dev; however:
Package golang-github-iafan-cwalk-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-smallfish-simpleyaml-dev; however:
Package golang-github-smallfish-simpleyaml-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-twotwotwo-sorts-dev; however:
Package golang-github-twotwotwo-sorts-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-klauspost-compress-dev; however:
Package golang-github-klauspost-compress-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-klauspost-pgzip-dev; however:
Package golang-github-klauspost-pgzip-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-pkg-errors-dev; however:
Package golang-github-pkg-errors-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-shenwei356-breader-dev; however:
Package golang-github-shenwei356-breader-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-shenwei356-util-dev; however:
Package golang-github-shenwei356-util-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-shenwei356-xopen-dev (>= 0.0~git20231203.5ad79ea); however:
Package golang-github-shenwei356-xopen-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-ulikunitz-xz-dev; however:
Package golang-github-ulikunitz-xz-dev is not installed.
pbuilder-satisfydepends-dummy depends on golang-github-vbauerster-mpb-dev (>= 8.8.3-1~); however:
Package golang-github-vbauerster-mpb-dev is not installed.
pbuilder-satisfydepends-dummy depends on samtools; however:
Package samtools is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-golang{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} golang-1.23-go{a} golang-1.23-src{a} golang-any{a} golang-github-acarl005-stripansi-dev{a} golang-github-ajstarks-svgo-dev{a} golang-github-biogo-biogo-dev{a} golang-github-biogo-hts-dev{a} golang-github-bsipos-thist-dev{a} golang-github-burntsushi-toml-dev{a} golang-github-cespare-xxhash-dev{a} golang-github-cpuguy83-go-md2man-v2-dev{a} golang-github-creack-pty-dev{a} golang-github-cznic-mathutil-dev{a} golang-github-cznic-sortutil-dev{a} golang-github-davecgh-go-spew-dev{a} golang-github-dsnet-compress-dev{a} golang-github-dsnet-golib-dev{a} golang-github-dustin-go-humanize-dev{a} golang-github-edsrzf-mmap-go-dev{a} golang-github-elliotwutingfeng-asciiset-dev{a} golang-github-fogleman-gg-dev{a} golang-github-fsnotify-fsnotify-dev{a} golang-github-golang-freetype-dev{a} golang-github-google-go-cmp-dev{a} golang-github-hashicorp-hcl-dev{a} golang-github-iafan-cwalk-dev{a} golang-github-jung-kurt-gofpdf-dev{a} golang-github-klauspost-compress-dev{a} golang-github-klauspost-pgzip-dev{a} golang-github-kr-fs-dev{a} golang-github-kr-pretty-dev{a} golang-github-kr-text-dev{a} golang-github-logrusorgru-aurora-dev{a} golang-github-magiconair-properties-dev{a} golang-github-mattn-go-colorable-dev{a} golang-github-mattn-go-isatty-dev{a} golang-github-mattn-go-runewidth-dev{a} golang-github-mitchellh-go-homedir-dev{a} golang-github-mitchellh-mapstructure-dev{a} golang-github-op-go-logging-dev{a} golang-github-pelletier-go-toml-dev{a} golang-github-pelletier-go-toml.v2-dev{a} golang-github-pkg-errors-dev{a} golang-github-pkg-sftp-dev{a} golang-github-pmezard-go-difflib-dev{a} golang-github-remyoudompheng-bigfft-dev{a} golang-github-rivo-uniseg-dev{a} golang-github-rogpeppe-go-internal-dev{a} golang-github-russross-blackfriday-v2-dev{a} golang-github-shenwei356-bio-dev{a} golang-github-shenwei356-breader-dev{a} golang-github-shenwei356-bwt-dev{a} golang-github-shenwei356-natsort-dev{a} golang-github-shenwei356-stable-dev{a} golang-github-shenwei356-util-dev{a} golang-github-shenwei356-xopen-dev{a} golang-github-shurcool-sanitized-anchor-name-dev{a} golang-github-smallfish-simpleyaml-dev{a} golang-github-spf13-afero-dev{a} golang-github-spf13-cast-dev{a} golang-github-spf13-cobra-dev{a} golang-github-spf13-jwalterweatherman-dev{a} golang-github-spf13-pflag-dev{a} golang-github-spf13-viper-dev{a} golang-github-stretchr-objx-dev{a} golang-github-stretchr-testify-dev{a} golang-github-subosito-gotenv-dev{a} golang-github-twotwotwo-sorts-dev{a} golang-github-ulikunitz-xz-dev{a} golang-github-vbauerster-mpb-dev{a} golang-github-vividcortex-ewma-dev{a} golang-github-yuin-goldmark-dev{a} golang-go{a} golang-golang-x-crypto-dev{a} golang-golang-x-exp-dev{a} golang-golang-x-image-dev{a} golang-golang-x-mod-dev{a} golang-golang-x-net-dev{a} golang-golang-x-sync-dev{a} golang-golang-x-sys-dev{a} golang-golang-x-term-dev{a} golang-golang-x-text-dev{a} golang-golang-x-tools-dev{a} golang-gonum-v1-plot-dev{a} golang-gopkg-check.v1-dev{a} golang-gopkg-ini.v1-dev{a} golang-gopkg-yaml.v2-dev{a} golang-gopkg-yaml.v3-dev{a} golang-src{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} po-debconf{a} samtools{a} sensible-utils{a} tzdata{a} tzdata-legacy{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx pkgconf publicsuffix wget
0 packages upgraded, 155 newly installed, 0 to remove and 0 not upgraded.
Need to get 125 MB of archives. After unpacking 509 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main armhf tzdata all 2024b-4 [256 kB]
Get: 2 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB]
Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB]
Get: 4 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB]
Get: 5 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB]
Get: 6 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-4 [196 kB]
Get: 7 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB]
Get: 8 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-7 [1095 kB]
Get: 9 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-13 [84.7 kB]
Get: 10 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB]
Get: 11 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB]
Get: 12 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-5 [272 kB]
Get: 13 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB]
Get: 14 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get: 15 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get: 16 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-4 [723 kB]
Get: 17 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.23 [90.6 kB]
Get: 18 http://deb.debian.org/debian trixie/main armhf libtool all 2.5.4-2 [539 kB]
Get: 19 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 20 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 21 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 22 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 23 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB]
Get: 24 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB]
Get: 25 http://deb.debian.org/debian trixie/main armhf libunistring5 armhf 1.3-1 [444 kB]
Get: 26 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5+b1 [9088 kB]
Get: 27 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB]
Get: 28 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-4 [1489 kB]
Get: 29 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 30 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 31 http://deb.debian.org/debian trixie/main armhf debhelper all 13.23 [919 kB]
Get: 32 http://deb.debian.org/debian trixie/main armhf dh-golang all 1.62 [24.7 kB]
Get: 33 http://deb.debian.org/debian trixie/main armhf golang-1.23-src all 1.23.4-2 [19.1 MB]
Get: 34 http://deb.debian.org/debian trixie/main armhf golang-1.23-go armhf 1.23.4-2 [23.6 MB]
Get: 35 http://deb.debian.org/debian trixie/main armhf golang-src all 2:1.23~2 [5088 B]
Get: 36 http://deb.debian.org/debian trixie/main armhf golang-go armhf 2:1.23~2 [44.3 kB]
Get: 37 http://deb.debian.org/debian trixie/main armhf golang-any armhf 2:1.23~2 [5172 B]
Get: 38 http://deb.debian.org/debian trixie/main armhf golang-github-acarl005-stripansi-dev all 0.0~git20180116.5a71ef0-3 [2888 B]
Get: 39 http://deb.debian.org/debian trixie/main armhf golang-github-ajstarks-svgo-dev all 2012-01-27-3 [12.9 kB]
Get: 40 http://deb.debian.org/debian trixie/main armhf golang-github-ulikunitz-xz-dev all 0.5.6-2 [352 kB]
Get: 41 http://deb.debian.org/debian trixie/main armhf golang-github-biogo-hts-dev all 1.4.5+dfsg1-1 [319 kB]
Get: 42 http://deb.debian.org/debian trixie/main armhf golang-github-creack-pty-dev all 1.1.21-1 [13.0 kB]
Get: 43 http://deb.debian.org/debian trixie/main armhf golang-github-kr-text-dev all 0.2.0-2 [10.2 kB]
Get: 44 http://deb.debian.org/debian trixie/main armhf golang-golang-x-mod-dev all 0.19.0-1 [104 kB]
Get: 45 http://deb.debian.org/debian trixie/main armhf golang-golang-x-sys-dev all 0.22.0-1 [431 kB]
Get: 46 http://deb.debian.org/debian trixie/main armhf golang-github-yuin-goldmark-dev all 1.7.4-1 [113 kB]
Get: 47 http://deb.debian.org/debian trixie/main armhf golang-golang-x-term-dev all 0.22.0-1 [14.8 kB]
Get: 48 http://deb.debian.org/debian trixie/main armhf golang-golang-x-text-dev all 0.16.0-1 [4003 kB]
Get: 49 http://deb.debian.org/debian trixie/main armhf golang-golang-x-crypto-dev all 1:0.25.0-1 [1682 kB]
Get: 50 http://deb.debian.org/debian trixie/main armhf golang-golang-x-net-dev all 1:0.27.0-1 [898 kB]
Get: 51 http://deb.debian.org/debian trixie/main armhf golang-golang-x-sync-dev all 0.7.0-1 [19.0 kB]
Get: 52 http://deb.debian.org/debian trixie/main armhf golang-golang-x-tools-dev all 1:0.23.0+ds-1 [1593 kB]
Get: 53 http://deb.debian.org/debian trixie/main armhf golang-github-rogpeppe-go-internal-dev all 1.12.0-3 [103 kB]
Get: 54 http://deb.debian.org/debian trixie/main armhf golang-github-kr-pretty-dev all 0.3.1-1 [11.9 kB]
Get: 55 http://deb.debian.org/debian trixie/main armhf golang-gopkg-check.v1-dev all 0.0+git20200902.038fdea-1 [32.1 kB]
Get: 56 http://deb.debian.org/debian trixie/main armhf golang-github-biogo-biogo-dev all 1.0.4-1 [189 kB]
Get: 57 http://deb.debian.org/debian trixie/main armhf golang-golang-x-exp-dev all 0.0~git20231006.7918f67-1 [105 kB]
Get: 58 http://deb.debian.org/debian trixie/main armhf golang-golang-x-image-dev all 0.18.0-1 [3000 kB]
Get: 59 http://deb.debian.org/debian trixie/main armhf golang-github-jung-kurt-gofpdf-dev all 2.17.2+ds-3 [954 kB]
Get: 60 http://deb.debian.org/debian trixie/main armhf golang-github-golang-freetype-dev all 0.0~git20170609.e2365df+dfsg-2 [54.0 kB]
Get: 61 http://deb.debian.org/debian trixie/main armhf golang-github-fogleman-gg-dev all 1.3.0-3 [14.8 kB]
Get: 62 http://deb.debian.org/debian trixie/main armhf golang-gonum-v1-plot-dev all 0.7.0-5 [4804 kB]
Get: 63 http://deb.debian.org/debian trixie/main armhf golang-github-bsipos-thist-dev all 1.0.0-2 [8636 B]
Get: 64 http://deb.debian.org/debian trixie/main armhf golang-github-burntsushi-toml-dev all 1.4.0-1 [116 kB]
Get: 65 http://deb.debian.org/debian trixie/main armhf golang-github-pmezard-go-difflib-dev all 1.0.0-3 [12.3 kB]
Get: 66 http://deb.debian.org/debian trixie/main armhf golang-github-shurcool-sanitized-anchor-name-dev all 1.0.0-3 [3748 B]
Get: 67 http://deb.debian.org/debian trixie/main armhf golang-github-russross-blackfriday-v2-dev all 2.1.0-1 [76.1 kB]
Get: 68 http://deb.debian.org/debian trixie/main armhf golang-github-cpuguy83-go-md2man-v2-dev all 2.0.4-1 [10.8 kB]
Get: 69 http://deb.debian.org/debian trixie/main armhf golang-github-remyoudompheng-bigfft-dev all 0.0+git20230129.24d4a6f-1 [13.2 kB]
Get: 70 http://deb.debian.org/debian trixie/main armhf golang-github-cznic-mathutil-dev all 0.0~git20201220.c6aa83b-2 [75.9 kB]
Get: 71 http://deb.debian.org/debian trixie/main armhf golang-github-cznic-sortutil-dev all 0.0~git20150617.0.4c73428-3 [5420 B]
Get: 72 http://deb.debian.org/debian trixie/main armhf golang-github-davecgh-go-spew-dev all 1.1.1-3 [30.1 kB]
Get: 73 http://deb.debian.org/debian trixie/main armhf golang-github-google-go-cmp-dev all 0.6.0-1 [86.6 kB]
Get: 74 http://deb.debian.org/debian trixie/main armhf golang-github-dsnet-golib-dev all 0.0~git20171103.1ea1667-1.1 [34.1 kB]
Get: 75 http://deb.debian.org/debian trixie/main armhf golang-github-cespare-xxhash-dev all 2.3.0-1 [10.8 kB]
Get: 76 http://deb.debian.org/debian trixie/main armhf golang-github-klauspost-compress-dev all 1.17.11+ds1-1 [33.3 MB]
Get: 77 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB]
Get: 78 http://deb.debian.org/debian trixie/main armhf libbrotli-dev armhf 1.1.0-2+b6 [293 kB]
Get: 79 http://deb.debian.org/debian trixie/main armhf libzstd-dev armhf 1.5.6+dfsg-2 [326 kB]
Get: 80 http://deb.debian.org/debian trixie/main armhf liblzma-dev armhf 5.6.3-1+b1 [304 kB]
Get: 81 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB]
Get: 82 http://deb.debian.org/debian trixie/main armhf libbz2-dev armhf 1.0.8-6 [28.7 kB]
Get: 83 http://deb.debian.org/debian trixie/main armhf golang-github-dsnet-compress-dev all 0.0.2~git20230904.39efe44+dfsg1-2 [189 kB]
Get: 84 http://deb.debian.org/debian trixie/main armhf golang-github-dustin-go-humanize-dev all 1.0.1-1 [16.9 kB]
Get: 85 http://deb.debian.org/debian trixie/main armhf golang-github-edsrzf-mmap-go-dev all 1.2.0-1 [8672 B]
Get: 86 http://deb.debian.org/debian trixie/main armhf golang-github-elliotwutingfeng-asciiset-dev all 0.0~git20240214.24af97c-2 [6252 B]
Get: 87 http://deb.debian.org/debian trixie/main armhf golang-github-fsnotify-fsnotify-dev all 1.8.0-1 [61.8 kB]
Get: 88 http://deb.debian.org/debian trixie/main armhf golang-github-hashicorp-hcl-dev all 1.0.0-1.1 [58.8 kB]
Get: 89 http://deb.debian.org/debian trixie/main armhf golang-github-iafan-cwalk-dev all 0.0~git20191125.dd7f505-3 [6128 B]
Get: 90 http://deb.debian.org/debian trixie/main armhf golang-github-klauspost-pgzip-dev all 1.2.6-1 [115 kB]
Get: 91 http://deb.debian.org/debian trixie/main armhf golang-github-kr-fs-dev all 0.1.0-2 [6412 B]
Get: 92 http://deb.debian.org/debian trixie/main armhf golang-github-logrusorgru-aurora-dev all 3.0.0-2 [19.0 kB]
Get: 93 http://deb.debian.org/debian trixie/main armhf golang-github-magiconair-properties-dev all 1.8.7-1 [29.5 kB]
Get: 94 http://deb.debian.org/debian trixie/main armhf golang-github-mattn-go-isatty-dev all 0.0.20-1 [6080 B]
Get: 95 http://deb.debian.org/debian trixie/main armhf golang-github-mattn-go-colorable-dev all 0.1.13-1 [10.3 kB]
Get: 96 http://deb.debian.org/debian trixie/main armhf golang-github-rivo-uniseg-dev all 0.4.7-1 [256 kB]
Get: 97 http://deb.debian.org/debian trixie/main armhf golang-github-mattn-go-runewidth-dev all 0.0.15-2 [16.0 kB]
Get: 98 http://deb.debian.org/debian trixie/main armhf golang-github-mitchellh-go-homedir-dev all 1.1.0-1 [5168 B]
Get: 99 http://deb.debian.org/debian trixie/main armhf golang-github-mitchellh-mapstructure-dev all 1.5.0+git20231216.8508981-1 [29.3 kB]
Get: 100 http://deb.debian.org/debian trixie/main armhf golang-github-op-go-logging-dev all 1+git20160315.970db52-2 [17.5 kB]
Get: 101 http://deb.debian.org/debian trixie/main armhf golang-gopkg-yaml.v2-dev all 2.4.0-4 [61.5 kB]
Get: 102 http://deb.debian.org/debian trixie/main armhf golang-github-pelletier-go-toml-dev all 1.9.5-1 [77.6 kB]
Get: 103 http://deb.debian.org/debian trixie/main armhf golang-github-pelletier-go-toml.v2-dev all 2.2.1-1 [876 kB]
Get: 104 http://deb.debian.org/debian trixie/main armhf golang-github-pkg-errors-dev all 0.9.1-3 [12.9 kB]
Get: 105 http://deb.debian.org/debian trixie/main armhf golang-github-pkg-sftp-dev all 1.13.6-1 [102 kB]
Get: 106 http://deb.debian.org/debian trixie/main armhf golang-github-twotwotwo-sorts-dev all 0.0~git20160814.bf5c1f2-3 [19.7 kB]
Get: 107 http://deb.debian.org/debian trixie/main armhf golang-github-shenwei356-xopen-dev all 0.0~git20231203.5ad79ea-1 [6204 B]
Get: 108 http://deb.debian.org/debian trixie/main armhf golang-github-shenwei356-breader-dev all 0.3.2-1 [6236 B]
Get: 109 http://deb.debian.org/debian trixie/main armhf golang-github-spf13-pflag-dev all 1.0.6~git20210604-d5e0c0615ace-1 [43.0 kB]
Get: 110 http://deb.debian.org/debian trixie/main armhf golang-github-spf13-afero-dev all 1.11.0-1 [58.3 kB]
Get: 111 http://deb.debian.org/debian trixie/main armhf tzdata-legacy all 2024b-4 [176 kB]
Get: 112 http://deb.debian.org/debian trixie/main armhf golang-github-spf13-cast-dev all 1.6.0-2 [14.0 kB]
Get: 113 http://deb.debian.org/debian trixie/main armhf golang-github-stretchr-objx-dev all 0.5.2-1 [25.5 kB]
Get: 114 http://deb.debian.org/debian trixie/main armhf golang-gopkg-yaml.v3-dev all 3.0.1-3 [74.3 kB]
Get: 115 http://deb.debian.org/debian trixie/main armhf golang-github-stretchr-testify-dev all 1.9.0-1 [74.7 kB]
Get: 116 http://deb.debian.org/debian trixie/main armhf golang-github-spf13-jwalterweatherman-dev all 1.1.0+really1.1.0-2 [8084 B]
Get: 117 http://deb.debian.org/debian trixie/main armhf golang-github-subosito-gotenv-dev all 1.3.0-1 [9340 B]
Get: 118 http://deb.debian.org/debian trixie/main armhf golang-gopkg-ini.v1-dev all 1.67.0-1 [39.9 kB]
Get: 119 http://deb.debian.org/debian trixie/main armhf golang-github-spf13-viper-dev all 1.12.0-1 [68.9 kB]
Get: 120 http://deb.debian.org/debian trixie/main armhf golang-github-spf13-cobra-dev all 1.8.1-1 [75.2 kB]
Get: 121 http://deb.debian.org/debian trixie/main armhf golang-github-shenwei356-natsort-dev all 0.0~git20190418.600d539-3 [3812 B]
Get: 122 http://deb.debian.org/debian trixie/main armhf golang-github-shenwei356-util-dev all 0.5.2-1 [18.4 kB]
Get: 123 http://deb.debian.org/debian trixie/main armhf golang-github-shenwei356-bio-dev all 0.13.3-1 [69.2 kB]
Get: 124 http://deb.debian.org/debian trixie/main armhf golang-github-shenwei356-bwt-dev all 0.6.0-2 [7452 B]
Get: 125 http://deb.debian.org/debian trixie/main armhf golang-github-shenwei356-stable-dev all 0.1.7-2 [10.8 kB]
Get: 126 http://deb.debian.org/debian trixie/main armhf golang-github-smallfish-simpleyaml-dev all 0.0~git20170911.a320310-2 [4692 B]
Get: 127 http://deb.debian.org/debian trixie/main armhf golang-github-vividcortex-ewma-dev all 1.1.1-2 [5384 B]
Get: 128 http://deb.debian.org/debian trixie/main armhf golang-github-vbauerster-mpb-dev all 8.8.3-1 [36.8 kB]
Get: 129 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.2-1 [23.3 kB]
Get: 130 http://deb.debian.org/debian trixie/main armhf libidn2-0 armhf 2.3.7-2+b1 [125 kB]
Get: 131 http://deb.debian.org/debian trixie/main armhf libffi8 armhf 3.4.6-1 [20.0 kB]
Get: 132 http://deb.debian.org/debian trixie/main armhf libp11-kit0 armhf 0.25.5-3 [385 kB]
Get: 133 http://deb.debian.org/debian trixie/main armhf libtasn1-6 armhf 4.19.0-3+b3 [43.9 kB]
Get: 134 http://deb.debian.org/debian trixie/main armhf libgnutls30t64 armhf 3.8.8-2 [1370 kB]
Get: 135 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB]
Get: 136 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB]
Get: 137 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B]
Get: 138 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB]
Get: 139 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB]
Get: 140 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB]
Get: 141 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB]
Get: 142 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.19+dfsg-1 [163 kB]
Get: 143 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB]
Get: 144 http://deb.debian.org/debian trixie/main armhf libnghttp3-9 armhf 1.6.0-2 [56.8 kB]
Get: 145 http://deb.debian.org/debian trixie/main armhf libngtcp2-16 armhf 1.9.1-1 [115 kB]
Get: 146 http://deb.debian.org/debian trixie/main armhf libngtcp2-crypto-gnutls8 armhf 1.9.1-1 [15.8 kB]
Get: 147 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB]
Get: 148 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB]
Get: 149 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB]
Get: 150 http://deb.debian.org/debian trixie/main armhf libcurl3t64-gnutls armhf 8.11.1-1 [311 kB]
Get: 151 http://deb.debian.org/debian trixie/main armhf libdeflate0 armhf 1.22-1 [36.3 kB]
Get: 152 http://deb.debian.org/debian trixie/main armhf libhtscodecs2 armhf 1.6.1-1 [63.1 kB]
Get: 153 http://deb.debian.org/debian trixie/main armhf libhts3t64 armhf 1.20+ds-2 [401 kB]
Get: 154 http://deb.debian.org/debian trixie/main armhf libncurses6 armhf 6.5-2+b1 [82.3 kB]
Get: 155 http://deb.debian.org/debian trixie/main armhf samtools armhf 1.20-3 [620 kB]
Fetched 125 MB in 4s (31.9 MB/s)
Preconfiguring packages ...
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(Reading database ... 19567 files and directories currently installed.)
Preparing to unpack .../000-tzdata_2024b-4_all.deb ...
Unpacking tzdata (2024b-4) ...
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Unpacking sensible-utils (0.0.24) ...
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Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:armhf.
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Unpacking libmagic1t64:armhf (1:5.45-3+b1) ...
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Unpacking file (1:5.45-3+b1) ...
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Preparing to unpack .../005-gettext-base_0.22.5-4_armhf.deb ...
Unpacking gettext-base (0.22.5-4) ...
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Unpacking libuchardet0:armhf (0.0.8-1+b2) ...
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Preparing to unpack .../007-groff-base_1.23.0-7_armhf.deb ...
Unpacking groff-base (1.23.0-7) ...
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Unpacking bsdextrautils (2.40.2-13) ...
Selecting previously unselected package libpipeline1:armhf.
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Unpacking libpipeline1:armhf (1.5.8-1) ...
Selecting previously unselected package man-db.
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Unpacking man-db (2.13.0-1) ...
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Preparing to unpack .../011-m4_1.4.19-5_armhf.deb ...
Unpacking m4 (1.4.19-5) ...
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Setting up libpipeline1:armhf (1.5.8-1) ...
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Setting up golang-github-stretchr-objx-dev (0.5.2-1) ...
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Current default time zone: 'Etc/UTC'
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Not building database; man-db/auto-update is not 'true'.
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Processing triggers for libc-bin (2.40-5) ...
Reading package lists...
Building dependency tree...
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Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/seqkit-2.9.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqkit_2.9.0+ds-1_source.changes
dpkg-buildpackage: info: source package seqkit
dpkg-buildpackage: info: source version 2.9.0+ds-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Maytham Alsudany <maytha8thedev@gmail.com>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem=golang --with=golang --builddirectory=build # --sourcedirectory=seqkit
dh_auto_clean -O--buildsystem=golang -O--builddirectory=build
dh_autoreconf_clean -O--buildsystem=golang -O--builddirectory=build
dh_clean -O--buildsystem=golang -O--builddirectory=build
debian/rules binary
dh binary --buildsystem=golang --with=golang --builddirectory=build # --sourcedirectory=seqkit
dh_update_autotools_config -O--buildsystem=golang -O--builddirectory=build
dh_autoreconf -O--buildsystem=golang -O--builddirectory=build
dh_auto_configure -O--buildsystem=golang -O--builddirectory=build
dh_auto_build -O--buildsystem=golang -O--builddirectory=build
cd build && go install -trimpath -v -p 3 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd
internal/goarch
internal/unsafeheader
internal/cpu
internal/abi
internal/byteorder
internal/chacha8rand
internal/bytealg
internal/coverage/rtcov
internal/godebugs
internal/goexperiment
internal/goos
internal/profilerecord
internal/runtime/atomic
internal/runtime/syscall
internal/stringslite
runtime/internal/math
runtime/internal/sys
internal/runtime/exithook
cmp
internal/itoa
internal/race
math/bits
unicode/utf8
sync/atomic
math
runtime
unicode
internal/asan
internal/msan
log/internal
internal/nettrace
image/color
internal/goversion
internal/platform
golang.org/x/image/math/f64
crypto/internal/alias
crypto/internal/boring/sig
encoding
unicode/utf16
image/color/palette
github.com/dsnet/compress/bzip2/internal/sais
github.com/dsnet/compress/internal
github.com/elliotwutingfeng/asciiset
github.com/klauspost/compress
github.com/ulikunitz/xz/internal/hash
container/list
vendor/golang.org/x/crypto/cryptobyte/asn1
vendor/golang.org/x/crypto/internal/alias
github.com/shenwei356/util/math
github.com/rivo/uniseg
github.com/VividCortex/ewma
github.com/vbauerster/mpb/internal
iter
sync
internal/reflectlite
slices
internal/weak
crypto/subtle
maps
internal/bisect
internal/testlog
internal/singleflight
errors
sort
strconv
io
internal/oserror
path
internal/godebug
syscall
strings
reflect
github.com/biogo/biogo/feat
bytes
bufio
vendor/golang.org/x/net/dns/dnsmessage
time
internal/syscall/unix
internal/syscall/execenv
math/rand/v2
internal/concurrent
unique
io/fs
internal/poll
internal/filepathlite
context
internal/fmtsort
encoding/binary
net/netip
os
golang.org/x/sys/unix
runtime/cgo
fmt
github.com/biogo/biogo/alphabet
github.com/biogo/biogo/seq
github.com/biogo/biogo/io/seqio
github.com/biogo/biogo/io/seqio/fasta
github.com/biogo/biogo/seq/linear
github.com/mattn/go-isatty
github.com/mattn/go-colorable
github.com/shenwei356/seqkit/benchmark
log
path/filepath
net
regexp/syntax
hash
crypto
crypto/md5
encoding/hex
text/tabwriter
github.com/biogo/biogo/align
regexp
compress/flate
hash/crc32
container/heap
net/url
compress/gzip
github.com/biogo/hts/bgzf
golang.org/x/term
github.com/biogo/hts/bgzf/index
golang.org/x/crypto/ssh/terminal
github.com/biogo/hts/internal
golang.org/x/image/math/fixed
image
github.com/biogo/hts/sam
image/internal/imageutil
image/draw
github.com/biogo/hts/bam
github.com/golang/freetype/raster
golang.org/x/image/font
go/token
github.com/golang/freetype/truetype
go/scanner
go/ast
go/build/constraint
go/doc/comment
internal/lazyregexp
go/internal/typeparams
go/doc
go/parser
internal/buildcfg
os/exec
io/ioutil
internal/goroot
go/build
log/syslog
gonum.org/v1/plot/vg/fonts
github.com/op/go-logging
golang.org/x/image/draw
golang.org/x/image/font/basicfont
gonum.org/v1/plot/vg
image/jpeg
gonum.org/v1/plot/vg/vgeps
hash/adler32
compress/zlib
golang.org/x/image/ccitt
image/png
golang.org/x/image/tiff/lzw
golang.org/x/image/tiff
crypto/rc4
crypto/cipher
internal/saferio
encoding/gob
crypto/internal/boring
crypto/sha1
encoding/base64
github.com/fogleman/gg
encoding/json
gonum.org/v1/plot/vg/vgimg
encoding/xml
compress/lzw
image/gif
math/rand
html
runtime/debug
gonum.org/v1/plot/palette
github.com/jung-kurt/gofpdf
github.com/ajstarks/svgo
gonum.org/v1/plot/tools/bezier
github.com/cespare/xxhash
gonum.org/v1/plot/vg/vgsvg
math/big
github.com/dsnet/compress/internal/errors
github.com/dsnet/compress
github.com/dsnet/compress/internal/prefix
github.com/dsnet/compress/bzip2
github.com/fsnotify/fsnotify/internal
github.com/fsnotify/fsnotify
github.com/cznic/sortutil
github.com/dustin/go-humanize
github.com/iafan/cwalk
crypto/internal/randutil
crypto/rand
github.com/klauspost/compress/fse
github.com/klauspost/compress/internal/snapref
github.com/klauspost/compress/flate
github.com/klauspost/compress/huff0
github.com/klauspost/compress/zstd
gonum.org/v1/plot/vg/vgpdf
gonum.org/v1/plot/vg/draw
github.com/klauspost/pgzip
gonum.org/v1/plot
github.com/logrusorgru/aurora
gonum.org/v1/plot/plotter
github.com/mitchellh/go-homedir
github.com/pkg/errors
crypto/sha256
github.com/ulikunitz/xz/internal/xlog
github.com/ulikunitz/xz/lzma
gonum.org/v1/plot/plotutil
hash/crc64
crypto/aes
github.com/bsipos/thist
crypto/des
crypto/internal/edwards25519/field
crypto/internal/nistec/fiat
crypto/internal/bigmod
github.com/ulikunitz/xz
crypto/internal/boring/bbig
crypto/sha512
encoding/asn1
crypto/internal/edwards25519
crypto/ed25519
vendor/golang.org/x/crypto/cryptobyte
crypto/hmac
vendor/golang.org/x/crypto/chacha20
vendor/golang.org/x/crypto/internal/poly1305
vendor/golang.org/x/crypto/chacha20poly1305
vendor/golang.org/x/crypto/hkdf
vendor/golang.org/x/sys/cpu
vendor/golang.org/x/crypto/sha3
crypto/rsa
crypto/internal/mlkem768
crypto/dsa
crypto/x509/pkix
encoding/pem
vendor/golang.org/x/text/transform
vendor/golang.org/x/text/unicode/bidi
vendor/golang.org/x/text/unicode/norm
crypto/internal/nistec
vendor/golang.org/x/text/secure/bidirule
net/textproto
crypto/ecdh
crypto/elliptic
crypto/internal/hpke
vendor/golang.org/x/net/idna
vendor/golang.org/x/net/http2/hpack
crypto/ecdsa
mime
crypto/x509
vendor/golang.org/x/net/http/httpguts
vendor/golang.org/x/net/http/httpproxy
mime/quotedprintable
net/http/internal
mime/multipart
net/http/internal/ascii
os/user
github.com/twotwotwo/sorts
github.com/twotwotwo/sorts/sortutil
github.com/shenwei356/util/byteutil
github.com/shenwei356/bio/seq
crypto/tls
github.com/edsrzf/mmap-go
github.com/shenwei356/bio/seqio/fai
github.com/shenwei356/bio/util
index/suffixarray
github.com/mattn/go-runewidth
github.com/shenwei356/bwt
github.com/shenwei356/stable
github.com/shenwei356/bwt/fmi
github.com/shenwei356/util/pathutil
github.com/shenwei356/util/randutil
github.com/shenwei356/natsort
gopkg.in/yaml.v2
github.com/shenwei356/util/stringutil
encoding/csv
flag
github.com/spf13/pflag
github.com/smallfish/simpleyaml
text/template/parse
github.com/acarl005/stripansi
net/http/httptrace
github.com/vbauerster/mpb/cwriter
net/http
text/template
github.com/vbauerster/mpb/decor
github.com/vbauerster/mpb
github.com/spf13/cobra
os/signal
github.com/shenwei356/xopen
github.com/shenwei356/breader
github.com/shenwei356/bio/seqio/fastx
github.com/shenwei356/bio/featio/gtf
github.com/shenwei356/seqkit/seqkit/cmd
github.com/shenwei356/seqkit/seqkit
dh_auto_test -O--buildsystem=golang -O--builddirectory=build
cd build && go test -vet=off -v -p 3 github.com/shenwei356/seqkit/benchmark github.com/shenwei356/seqkit/seqkit github.com/shenwei356/seqkit/seqkit/cmd
? github.com/shenwei356/seqkit/benchmark [no test files]
? github.com/shenwei356/seqkit/seqkit [no test files]
? github.com/shenwei356/seqkit/seqkit/cmd [no test files]
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=golang -O--builddirectory=build
dh_prep -O--buildsystem=golang -O--builddirectory=build
debian/rules override_dh_auto_install
make[1]: Entering directory '/build/reproducible-path/seqkit-2.9.0+ds'
dh_auto_install -- --no-source
cd build && mkdir -p /build/reproducible-path/seqkit-2.9.0\+ds/debian/tmp/usr
cd build && cp -r bin /build/reproducible-path/seqkit-2.9.0\+ds/debian/tmp/usr
make[1]: Leaving directory '/build/reproducible-path/seqkit-2.9.0+ds'
dh_install -O--buildsystem=golang -O--builddirectory=build
debian/rules override_dh_installdocs
make[1]: Entering directory '/build/reproducible-path/seqkit-2.9.0+ds'
# Regenerate bam and bam index files
cat debian/missing-sources/pcs109_5k_prim.sam | samtools view -Sb - > tests/pcs109_5k_prim.bam
cat debian/missing-sources/pcs109_5k.sam | samtools view -Sb - > tests/pcs109_5k.bam
cat debian/missing-sources/pcs109_5k_spliced.sam | samtools view -Sb - > tests/pcs109_5k_spliced.bam
samtools index tests/pcs109_5k_prim.bam tests/pcs109_5k_prim.bam.bai
samtools index tests/pcs109_5k.bam tests/pcs109_5k.bam.bai
samtools index tests/pcs109_5k_spliced.bam tests/pcs109_5k_spliced.bam.bai
dh_installdocs
make[1]: Leaving directory '/build/reproducible-path/seqkit-2.9.0+ds'
dh_installchangelogs -O--buildsystem=golang -O--builddirectory=build
dh_installman -O--buildsystem=golang -O--builddirectory=build
dh_installsystemduser -O--buildsystem=golang -O--builddirectory=build
dh_perl -O--buildsystem=golang -O--builddirectory=build
dh_link -O--buildsystem=golang -O--builddirectory=build
dh_strip_nondeterminism -O--buildsystem=golang -O--builddirectory=build
dh_compress -O--buildsystem=golang -O--builddirectory=build
dh_fixperms -O--buildsystem=golang -O--builddirectory=build
dh_missing -O--buildsystem=golang -O--builddirectory=build
dh_strip -a -O--buildsystem=golang -O--builddirectory=build
dh_strip: warning: Could not find the BuildID in debian/seqkit/usr/lib/seqkit/benchmark
dh_strip: warning: Could not find the BuildID in debian/seqkit/usr/bin/seqkit
dh_makeshlibs -a -O--buildsystem=golang -O--builddirectory=build
dh_shlibdeps -a -O--buildsystem=golang -O--builddirectory=build
dh_installdeb -O--buildsystem=golang -O--builddirectory=build
dh_golang -O--buildsystem=golang -O--builddirectory=build
dh_gencontrol -O--buildsystem=golang -O--builddirectory=build
dpkg-gencontrol: warning: package seqkit: substitution variable ${misc:Static-Built-Using} unused, but is defined
dpkg-gencontrol: warning: Depends field of package seqkit-examples: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -O--buildsystem=golang -O--builddirectory=build
dh_builddeb -O--buildsystem=golang -O--builddirectory=build
dpkg-deb: building package 'seqkit' in '../seqkit_2.9.0+ds-1_armhf.deb'.
dpkg-deb: building package 'seqkit-examples' in '../seqkit-examples_2.9.0+ds-1_all.deb'.
dpkg-genbuildinfo --build=binary -O../seqkit_2.9.0+ds-1_armhf.buildinfo
dpkg-genchanges --build=binary -O../seqkit_2.9.0+ds-1_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/10231 and its subdirectories
I: Current time: Mon Jan 13 04:17:59 -12 2025
I: pbuilder-time-stamp: 1736785079
Mon Jan 13 16:20:32 UTC 2025 I: 1st build successful. Starting 2nd build on remote node virt64z-armhf-rb.debian.net.
Mon Jan 13 16:20:32 UTC 2025 I: Preparing to do remote build '2' on virt64z-armhf-rb.debian.net.
Mon Jan 13 16:28:51 UTC 2025 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net.
Mon Jan 13 16:28:54 UTC 2025 I: seqkit_2.9.0+ds-1_armhf.changes:
Format: 1.8
Date: Thu, 09 Jan 2025 19:58:02 +0800
Source: seqkit
Binary: seqkit seqkit-examples
Architecture: all armhf
Version: 2.9.0+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Maytham Alsudany <maytha8thedev@gmail.com>
Description:
seqkit - cross-platform and ultrafast toolkit for FASTA/Q file manipulatio
seqkit-examples - examples for seqkit: toolkit for FASTA/Q file manipulation
Changes:
seqkit (2.9.0+ds-1) unstable; urgency=medium
.
* Team upload.
* New upstream version 2.9.0
Checksums-Sha1:
1e1261a785ac582b07a63f0dea39bd7ad5ec8b93 39612544 seqkit-examples_2.9.0+ds-1_all.deb
657ca039d80b156b415fb09b6f2f537024b6fcc6 10444 seqkit_2.9.0+ds-1_armhf.buildinfo
9e4f6d6b546e3729dc3a87dc131a0718e9f62db0 6389108 seqkit_2.9.0+ds-1_armhf.deb
Checksums-Sha256:
4839937841a7833d8a666829f10aa6339942997b7977c53aead91ac9316bf6a5 39612544 seqkit-examples_2.9.0+ds-1_all.deb
8312ad778c171ad35839ebe229b705a56eac48dd7df1f55106841e57681d7c37 10444 seqkit_2.9.0+ds-1_armhf.buildinfo
710303854b0fcf9e05c3acf9e6fd6b428fe724ce9338471a1ebcea310cfbbe50 6389108 seqkit_2.9.0+ds-1_armhf.deb
Files:
b30e67c3c2e87e8609e51b43387c9f77 39612544 science optional seqkit-examples_2.9.0+ds-1_all.deb
5447b6df940a355f54909f4e945be726 10444 science optional seqkit_2.9.0+ds-1_armhf.buildinfo
750befed218168e73c31db402d3976c3 6389108 science optional seqkit_2.9.0+ds-1_armhf.deb
Mon Jan 13 16:28:55 UTC 2025 I: diffoscope 284 will be used to compare the two builds:
Running as unit: rb-diffoscope-armhf_9-11662.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.5Gd79ZRM/seqkit_2.9.0+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.5Gd79ZRM/seqkit_2.9.0+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.5Gd79ZRM/seqkit_2.9.0+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.5Gd79ZRM/b1/seqkit_2.9.0+ds-1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.5Gd79ZRM/b2/seqkit_2.9.0+ds-1_armhf.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.716s)
0.716s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.397s)
0.397s 12 calls diffoscope.comparators.binary.FilesystemFile
## specialize (total time: 0.000s)
0.000s 1 call specialize
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 1.001s
CPU time consumed: 1.002s
Mon Jan 13 16:28:56 UTC 2025 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists.
Mon Jan 13 16:28:56 UTC 2025 I: seqkit from trixie built successfully and reproducibly on armhf.
Mon Jan 13 16:28:57 UTC 2025 I: Submitting .buildinfo files to external archives:
Mon Jan 13 16:28:57 UTC 2025 I: Submitting 12K b1/seqkit_2.9.0+ds-1_armhf.buildinfo.asc
Mon Jan 13 16:28:58 UTC 2025 I: Submitting 12K b2/seqkit_2.9.0+ds-1_armhf.buildinfo.asc
Mon Jan 13 16:28:59 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Mon Jan 13 16:28:59 UTC 2025 I: Done submitting .buildinfo files.
Mon Jan 13 16:28:59 UTC 2025 I: Removing signed seqkit_2.9.0+ds-1_armhf.buildinfo.asc files:
removed './b1/seqkit_2.9.0+ds-1_armhf.buildinfo.asc'
removed './b2/seqkit_2.9.0+ds-1_armhf.buildinfo.asc'