Fri May 17 13:01:49 UTC 2024 I: starting to build seqan-needle/trixie/armhf on jenkins on '2024-05-17 13:01' Fri May 17 13:01:49 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_8/8603/console.log Fri May 17 13:01:49 UTC 2024 I: Downloading source for trixie/seqan-needle=1.0.2+ds-2 --2024-05-17 13:01:49-- http://deb.debian.org/debian/pool/main/s/seqan-needle/seqan-needle_1.0.2%2bds-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2275 (2.2K) [text/prs.lines.tag] Saving to: ‘seqan-needle_1.0.2+ds-2.dsc’ 0K .. 100% 321M=0s 2024-05-17 13:01:49 (321 MB/s) - ‘seqan-needle_1.0.2+ds-2.dsc’ saved [2275/2275] Fri May 17 13:01:49 UTC 2024 I: seqan-needle_1.0.2+ds-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: seqan-needle Binary: seqan-needle, seqan-needle-doc Architecture: any all Version: 1.0.2+ds-2 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://github.com/seqan/needle Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/seqan-needle Vcs-Git: https://salsa.debian.org/med-team/seqan-needle.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, cmake, libcereal-dev, libgtest-dev, libseqan3-dev Build-Depends: debhelper-compat (= 13), cmake, libseqan3-dev (>= 3.2.0+ds-5), libgtest-dev, libcereal-dev, pkg-config, doxygen Package-List: seqan-needle deb science optional arch=any seqan-needle-doc deb doc optional arch=all Checksums-Sha1: 2314b18283afd2cfdefd3500c150af168a70f4d2 5049372 seqan-needle_1.0.2+ds.orig.tar.xz 6c11c15e899e769a14a821e6fd7c251c9fa21aeb 6484 seqan-needle_1.0.2+ds-2.debian.tar.xz Checksums-Sha256: 28936c5bdfced7b09ac95459196d90a7a16a8b058f3bd18e552558a12f68ea5a 5049372 seqan-needle_1.0.2+ds.orig.tar.xz e3c577eeb7b5744343c6524afbda73b46b692f8083c2245798a31c331bc67dd6 6484 seqan-needle_1.0.2+ds-2.debian.tar.xz Files: 25b030304d451610574aac31b59fe16d 5049372 seqan-needle_1.0.2+ds.orig.tar.xz 4f170525b9a513630be60e2b56495319 6484 seqan-needle_1.0.2+ds-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCgAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWcRRMOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtGAIw/+J+q8HnYBG75m4E3gIxL4ALhQODZgOpwaAqEc D8qJC5hy/odo1F4TqSm7m8EdeuYz4lLLKhV3OWrSFuRkYoK16QjUrMisQLXaJutb KIGuN6NjzAgSfU3B4bdbS/0mjozYHU/kmTng23VFHQbEGfASl4Lfnm51URw2skpE WXjv5uCO8IXTioutrr5nixhVSdX04Hh5bF8ozo55H+5bPgH8pDWJpqq0y7we+9ja ZrjtMlIijMLZ4THDOVhBOygNqw+kdDc2B612ZAI1OIIx58dwNL+vGKFFQZtCcqMZ VOuLszCuRAxaZJ38ib++kkVBILg5glhzCWKEqrTHJoeecyVFa4ZvGvzuD8rIU9jk YwOEVXh/KpyDqYG16EjHyH6lfMX79uABWGMYF2TRngNFHPV668Q2Sk9l9FX4qOwS 2plx9Gu4We36PK5iBTB06ZhTU6wTkkLekwLUV5RmpBGad9jAmSE+FjfhumBUm4AI +cHGt0WC+eFR+WkFhbp9Iz7rMt2Y3dMolyYjI8wZIQHTp4ljZwkFibg619N2+6xs 8GftbJWiKYq645FH1p22pVqDafN6JtgPHsFGTTYh1qFlH+m8ijkDp4hvllXksmKa 69ipTSgTAbR+acVrWJbTokb6A413oDqm3WCeFD+QmpZt4Pq39/uDf+bFvs/BCN3f xGa83wI= =aDLd -----END PGP SIGNATURE----- Fri May 17 13:01:49 UTC 2024 I: Checking whether the package is not for us Fri May 17 13:01:49 UTC 2024 I: Starting 1st build on remote node virt64a-armhf-rb.debian.net. Fri May 17 13:01:49 UTC 2024 I: Preparing to do remote build '1' on virt64a-armhf-rb.debian.net. Fri May 17 13:06:07 UTC 2024 I: Deleting $TMPDIR on virt64a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri May 17 01:01:57 -12 2024 I: pbuilder-time-stamp: 1715950917 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqan-needle_1.0.2+ds-2.dsc] I: copying [./seqan-needle_1.0.2+ds.orig.tar.xz] I: copying [./seqan-needle_1.0.2+ds-2.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Jan 8 18:55:15 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./seqan-needle_1.0.2+ds-2.dsc: no acceptable signature found dpkg-source: info: extracting seqan-needle in seqan-needle-1.0.2+ds dpkg-source: info: unpacking seqan-needle_1.0.2+ds.orig.tar.xz dpkg-source: info: unpacking seqan-needle_1.0.2+ds-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 743f0c2db4ed59aeb6b76744aa8485f208b9f9d2.patch dpkg-source: info: applying privacy dpkg-source: info: applying debian_seqan3 dpkg-source: info: applying create_doc_without_previous_binary_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4093/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='853561a79db84a679a50b47fe4e87192' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4093' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.I4uzFaa1/pbuilderrc_JFDD --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.I4uzFaa1/b1 --logfile b1/build.log seqan-needle_1.0.2+ds-2.dsc' SUDO_GID='114' SUDO_UID='108' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64a 6.1.0-21-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 17 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4093/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libseqan3-dev (>= 3.2.0+ds-5), libgtest-dev, libcereal-dev, pkg-config, doxygen dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19445 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libseqan3-dev (>= 3.2.0+ds-5); however: Package libseqan3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcereal-dev{a} libclang-cpp16t64{a} libclang1-16t64{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libedit2{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfmt9{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libllvm16t64{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libseqan3-dev{a} libssh2-1t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} libz3-4{a} m4{a} man-db{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx psmisc publicsuffix wget 0 packages upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 79.0 MB of archives. After unpacking 340 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libproc2-0 armhf 2:4.0.4-4 [55.7 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf procps armhf 2:4.0.4-4 [864 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-4 [1090 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40-8 [85.6 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.1-1 [1375 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b3 [598 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libarchive13t64 armhf 3.7.2-2 [304 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.20.1-6+b1 [30.6 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.1~rc2-1 [21.8 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.20.1-6+b1 [75.5 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 26 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.20.1-6+b1 [290 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.20.1-6+b1 [112 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.61.0-1+b1 [64.1 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [53.2 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.0-4.1+b2 [198 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libcurl4t64 armhf 8.7.1-5 [391 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libjsoncpp25 armhf 1.9.5-6+b2 [69.9 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf librhash0 armhf 1.4.3-3+b1 [143 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libuv1t64 armhf 1.48.0-1.1 [134 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf cmake-data all 3.29.3-1 [2167 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf cmake armhf 3.29.3-1+b2 [5216 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 46 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf libbsd0 armhf 0.12.2-1 [127 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf libedit2 armhf 3.1-20230828-1+b1 [77.6 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf libz3-4 armhf 4.8.12-3.1+b2 [6324 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libllvm16t64 armhf 1:16.0.6-27 [20.6 MB] Get: 56 http://deb.debian.org/debian trixie/main armhf libclang-cpp16t64 armhf 1:16.0.6-27 [9876 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf libclang1-16t64 armhf 1:16.0.6-27 [5543 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf libfmt9 armhf 9.1.0+ds1-2 [105 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf doxygen armhf 1.9.8+ds-2+b1 [4461 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf googletest all 1.14.0-1 [512 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libbz2-dev armhf 1.0.8-5.1 [28.3 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf rapidjson-dev all 1.1.0+dfsg2-7.2 [97.8 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf libcereal-dev armhf 1.3.2+dfsg-5 [221 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libgtest-dev armhf 1.14.0-1+b1 [240 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf libpkgconf3 armhf 1.8.1-1+b2 [31.9 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1 [904 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf libseqan3-dev all 3.3.0+ds-1 [758 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf pkgconf-bin armhf 1.8.1-1+b2 [28.9 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf pkgconf armhf 1.8.1-1+b2 [26.2 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf pkg-config armhf 1.8.1-1+b2 [14.0 kB] Fetched 79.0 MB in 11s (7052 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19445 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_armhf.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/seqan-needle-1.0.2+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqan-needle_1.0.2+ds-2_source.changes dpkg-buildpackage: info: source package seqan-needle dpkg-buildpackage: info: source version 1.0.2+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Komolehin Israel Timilehin dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds' rm -Rf lib/seqan3 dh_auto_configure -- -DSEQAN3_NO_LEMON=OFF cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DSEQAN3_NO_LEMON=OFF .. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/share/cmake/seqan3/seqan3-config-version.cmake:87 (message): SeqAn3 does not support 32bit architectures; No guarantees; Patches are welcome. Call Stack (most recent call first): CMakeLists.txt:28 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- You can run `make` to build the application. -- Found Doxygen: /usr/bin/doxygen -- You can run `make doc` to build api documentation. -- You can run `make test` to build and run tests. -- Configuring done (18.7s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED SEQAN3_NO_LEMON -- Build files have been written to: /build/reproducible-path/seqan-needle-1.0.2+ds/obj-arm-linux-gnueabihf make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds' dh_auto_build --arch cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.2+ds -B/build/reproducible-path/seqan-needle-1.0.2+ds/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-needle-1.0.2+ds/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/seqan-needle-1.0.2+ds/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-arm-linux-gnueabihf' cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.2+ds /build/reproducible-path/seqan-needle-1.0.2+ds/src /build/reproducible-path/seqan-needle-1.0.2+ds/obj-arm-linux-gnueabihf /build/reproducible-path/seqan-needle-1.0.2+ds/obj-arm-linux-gnueabihf/src /build/reproducible-path/seqan-needle-1.0.2+ds/obj-arm-linux-gnueabihf/src/CMakeFiles/needle_lib.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-arm-linux-gnueabihf' [ 20%] Building CXX object src/CMakeFiles/needle_lib.dir/ibf.cpp.o cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.2+ds/src/../include -I/build/reproducible-path/seqan-needle-1.0.2+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/ibf.cpp.o -MF CMakeFiles/needle_lib.dir/ibf.cpp.o.d -o CMakeFiles/needle_lib.dir/ibf.cpp.o -c /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp [ 40%] Building CXX object src/CMakeFiles/needle_lib.dir/estimate.cpp.o cd /build/reproducible-path/seqan-needle-1.0.2+ds/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -I/build/reproducible-path/seqan-needle-1.0.2+ds/src/../include -I/build/reproducible-path/seqan-needle-1.0.2+ds/lib/robin-hood-hashing/src/include -isystem /usr/include/seqan3/submodules/sdsl-lite/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++20 -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/estimate.cpp.o -MF CMakeFiles/needle_lib.dir/estimate.cpp.o.d -o CMakeFiles/needle_lib.dir/estimate.cpp.o -c /build/reproducible-path/seqan-needle-1.0.2+ds/src/estimate.cpp In file included from /usr/include/seqan3/alphabet/nucleotide/nucleotide_base.hpp:15, from /usr/include/seqan3/alphabet/nucleotide/dna4.hpp:17, from /build/reproducible-path/seqan-needle-1.0.2+ds/src/estimate.cpp:25: /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base’: /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:112:7: required from ‘class seqan3::alphabet_tuple_base’ /usr/include/seqan3/alphabet/cigar/cigar.hpp:59:22: required from here /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 59 | static_assert(size != 0, "alphabet size must be >= 1"); // == 1 is handled below in separate specialisation | ~~~~~^~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base::component_proxy, 0, char32_t>’: /usr/include/seqan3/alphabet/detail/alphabet_proxy.hpp:59:7: required from ‘class seqan3::alphabet_proxy::component_proxy, unsigned int>’ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:672:62: required from ‘class seqan3::alphabet_tuple_base::component_proxy’ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:357:48: required from ‘constexpr auto seqan3::get(alphabet_tuple_base&) [with unsigned int index = 0; derived_type = cigar; component_types = {unsigned int, exposition_only::cigar_operation}]’ /usr/include/seqan3/alphabet/cigar/cigar.hpp:177:19: required from here /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ In file included from /usr/include/seqan3/alphabet/nucleotide/nucleotide_base.hpp:15, from /usr/include/seqan3/alphabet/nucleotide/dna4.hpp:17, from /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:29: /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base’: /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:112:7: required from ‘class seqan3::alphabet_tuple_base’ /usr/include/seqan3/alphabet/cigar/cigar.hpp:59:22: required from here /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 59 | static_assert(size != 0, "alphabet size must be >= 1"); // == 1 is handled below in separate specialisation | ~~~~~^~~~ /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ /usr/include/seqan3/alphabet/alphabet_base.hpp: In instantiation of ‘class seqan3::alphabet_base::component_proxy, 0, char32_t>’: /usr/include/seqan3/alphabet/detail/alphabet_proxy.hpp:59:7: required from ‘class seqan3::alphabet_proxy::component_proxy, unsigned int>’ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:672:62: required from ‘class seqan3::alphabet_tuple_base::component_proxy’ /usr/include/seqan3/alphabet/composite/alphabet_tuple_base.hpp:357:48: required from ‘constexpr auto seqan3::get(alphabet_tuple_base&) [with unsigned int index = 0; derived_type = cigar; component_types = {unsigned int, exposition_only::cigar_operation}]’ /usr/include/seqan3/alphabet/cigar/cigar.hpp:177:19: required from here /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: error: static assertion failed: alphabet size must be >= 1 /usr/include/seqan3/alphabet/alphabet_base.hpp:59:24: note: the comparison reduces to ‘(0 != 0)’ In file included from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/rrr_helper.hpp:21, from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/rrr_vector.hpp:24, from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/bit_vectors.hpp:16, from /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:18, from /build/reproducible-path/seqan-needle-1.0.2+ds/src/../include/shared.h:14, from /build/reproducible-path/seqan-needle-1.0.2+ds/src/../include/ibf.h:19, from /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:37: /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/uint128_t.hpp:19:56: error: unable to emulate ‘TI’ 19 | typedef unsigned int uint128_t __attribute__((mode(TI))); | ^ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:160:55: error: narrowing conversion of ‘13572355802537770549’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 160 | static constexpr std::array hash_seeds{13572355802537770549ULL, // 2**64 / (e/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:161:55: error: narrowing conversion of ‘13043817825332782213’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 161 | 13043817825332782213ULL, // 2**64 / sqrt(2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:162:55: error: narrowing conversion of ‘10650232656628343401’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 162 | 10650232656628343401ULL, // 2**64 / sqrt(3) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:163:55: error: narrowing conversion of ‘16499269484942379435’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 163 | 16499269484942379435ULL, // 2**64 / (sqrt(5)/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:164:55: error: narrowing conversion of ‘4893150838803335377’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 164 | 4893150838803335377ULL}; // 2**64 / (3*pi/5) | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:160:55: error: narrowing conversion of ‘13572355802537770549’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 160 | static constexpr std::array hash_seeds{13572355802537770549ULL, // 2**64 / (e/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:161:55: error: narrowing conversion of ‘13043817825332782213’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 161 | 13043817825332782213ULL, // 2**64 / sqrt(2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:162:55: error: narrowing conversion of ‘10650232656628343401’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 162 | 10650232656628343401ULL, // 2**64 / sqrt(3) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:163:55: error: narrowing conversion of ‘16499269484942379435’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 163 | 16499269484942379435ULL, // 2**64 / (sqrt(5)/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:164:55: error: narrowing conversion of ‘4893150838803335377’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 164 | 4893150838803335377ULL}; // 2**64 / (3*pi/5) | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/rrr_helper.hpp:21, from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/rrr_vector.hpp:24, from /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/bit_vectors.hpp:16, from /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:18, from /build/reproducible-path/seqan-needle-1.0.2+ds/src/../include/shared.h:14, from /build/reproducible-path/seqan-needle-1.0.2+ds/src/../include/estimate.h:12, from /build/reproducible-path/seqan-needle-1.0.2+ds/src/estimate.cpp:29: /usr/include/seqan3/submodules/sdsl-lite/include/sdsl/uint128_t.hpp:19:56: error: unable to emulate ‘TI’ 19 | typedef unsigned int uint128_t __attribute__((mode(TI))); | ^ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:160:55: error: narrowing conversion of ‘13572355802537770549’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 160 | static constexpr std::array hash_seeds{13572355802537770549ULL, // 2**64 / (e/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:161:55: error: narrowing conversion of ‘13043817825332782213’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 161 | 13043817825332782213ULL, // 2**64 / sqrt(2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:162:55: error: narrowing conversion of ‘10650232656628343401’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 162 | 10650232656628343401ULL, // 2**64 / sqrt(3) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:163:55: error: narrowing conversion of ‘16499269484942379435’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 163 | 16499269484942379435ULL, // 2**64 / (sqrt(5)/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:164:55: error: narrowing conversion of ‘4893150838803335377’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 164 | 4893150838803335377ULL}; // 2**64 / (3*pi/5) | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:160:55: error: narrowing conversion of ‘13572355802537770549’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 160 | static constexpr std::array hash_seeds{13572355802537770549ULL, // 2**64 / (e/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:161:55: error: narrowing conversion of ‘13043817825332782213’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 161 | 13043817825332782213ULL, // 2**64 / sqrt(2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:162:55: error: narrowing conversion of ‘10650232656628343401’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 162 | 10650232656628343401ULL, // 2**64 / sqrt(3) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:163:55: error: narrowing conversion of ‘16499269484942379435’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 163 | 16499269484942379435ULL, // 2**64 / (sqrt(5)/2) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:164:55: error: narrowing conversion of ‘4893150838803335377’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 164 | 4893150838803335377ULL}; // 2**64 / (3*pi/5) | ^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp: In function ‘void fill_hash_table_parallel(const min_arguments&, seqan3::sequence_file_input >&, robin_hood::unordered_node_map&, robin_hood::unordered_node_map&, robin_hood::unordered_set&, robin_hood::unordered_set&, bool, uint8_t)’: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:242:38: warning: narrowing conversion of ‘thread_count’ from ‘size_t’ {aka ‘unsigned int’} to ‘ptrdiff_t’ {aka ‘int’} [-Wnarrowing] 242 | seqan3::detail::latch sync_point{thread_count}; | ^~~~~~~~~~~~ /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:243:40: warning: narrowing conversion of ‘thread_count’ from ‘size_t’ {aka ‘unsigned int’} to ‘ptrdiff_t’ {aka ‘int’} [-Wnarrowing] 243 | seqan3::detail::latch sync_point_2{thread_count}; | ^~~~~~~~~~~~ /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp: In instantiation of ‘fill_hash_table_parallel(const min_arguments&, seqan3::sequence_file_input >&, robin_hood::unordered_node_map&, robin_hood::unordered_node_map&, robin_hood::unordered_set&, robin_hood::unordered_set&, bool, uint8_t)::)> [with auto:91 = robin_hood::detail::Table, robin_hood::hash, std::equal_to >]’: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:268:54: required from here /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:217:64: error: no matching function for call to ‘min(long unsigned int, unsigned int)’ 217 | it->second = static_cast(std::min(65534ul, it->second + minimiser_count)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:51, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /usr/include/c++/13/chrono:45, from /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:8: /usr/include/c++/13/bits/stl_algobase.h:233:5: note: candidate: ‘template constexpr const _Tp& std::min(const _Tp&, const _Tp&)’ 233 | min(const _Tp& __a, const _Tp& __b) | ^~~ /usr/include/c++/13/bits/stl_algobase.h:233:5: note: template argument deduction/substitution failed: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:217:64: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘unsigned int’) 217 | it->second = static_cast(std::min(65534ul, it->second + minimiser_count)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algobase.h:281:5: note: candidate: ‘template constexpr const _Tp& std::min(const _Tp&, const _Tp&, _Compare)’ 281 | min(const _Tp& __a, const _Tp& __b, _Compare __comp) | ^~~ /usr/include/c++/13/bits/stl_algobase.h:281:5: note: template argument deduction/substitution failed: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:217:64: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘unsigned int’) 217 | it->second = static_cast(std::min(65534ul, it->second + minimiser_count)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/chrono:48: /usr/include/c++/13/bits/stl_algo.h:5775:5: note: candidate: ‘template constexpr _Tp std::min(initializer_list<_Tp>)’ 5775 | min(initializer_list<_Tp> __l) | ^~~ /usr/include/c++/13/bits/stl_algo.h:5775:5: note: template argument deduction/substitution failed: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:217:64: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’ 217 | it->second = static_cast(std::min(65534ul, it->second + minimiser_count)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:5785:5: note: candidate: ‘template constexpr _Tp std::min(initializer_list<_Tp>, _Compare)’ 5785 | min(initializer_list<_Tp> __l, _Compare __comp) | ^~~ /usr/include/c++/13/bits/stl_algo.h:5785:5: note: template argument deduction/substitution failed: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:217:64: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’ 217 | it->second = static_cast(std::min(65534ul, it->second + minimiser_count)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp: In instantiation of ‘fill_hash_table_parallel(const min_arguments&, seqan3::sequence_file_input >&, robin_hood::unordered_node_map&, robin_hood::unordered_node_map&, robin_hood::unordered_set&, robin_hood::unordered_set&, bool, uint8_t)::)> [with auto:91 = robin_hood::detail::Table, std::equal_to >]’: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:298:36: required from here /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:217:64: error: no matching function for call to ‘min(long unsigned int, unsigned int)’ /usr/include/c++/13/bits/stl_algobase.h:233:5: note: candidate: ‘template constexpr const _Tp& std::min(const _Tp&, const _Tp&)’ 233 | min(const _Tp& __a, const _Tp& __b) | ^~~ /usr/include/c++/13/bits/stl_algobase.h:233:5: note: template argument deduction/substitution failed: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:217:64: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘unsigned int’) 217 | it->second = static_cast(std::min(65534ul, it->second + minimiser_count)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algobase.h:281:5: note: candidate: ‘template constexpr const _Tp& std::min(const _Tp&, const _Tp&, _Compare)’ 281 | min(const _Tp& __a, const _Tp& __b, _Compare __comp) | ^~~ /usr/include/c++/13/bits/stl_algobase.h:281:5: note: template argument deduction/substitution failed: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:217:64: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘unsigned int’) 217 | it->second = static_cast(std::min(65534ul, it->second + minimiser_count)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:5775:5: note: candidate: ‘template constexpr _Tp std::min(initializer_list<_Tp>)’ 5775 | min(initializer_list<_Tp> __l) | ^~~ /usr/include/c++/13/bits/stl_algo.h:5775:5: note: template argument deduction/substitution failed: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:217:64: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’ 217 | it->second = static_cast(std::min(65534ul, it->second + minimiser_count)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:5785:5: note: candidate: ‘template constexpr _Tp std::min(initializer_list<_Tp>, _Compare)’ 5785 | min(initializer_list<_Tp> __l, _Compare __comp) | ^~~ /usr/include/c++/13/bits/stl_algo.h:5785:5: note: template argument deduction/substitution failed: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:217:64: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’ 217 | it->second = static_cast(std::min(65534ul, it->second + minimiser_count)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp: In lambda function: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:318:72: error: no matching function for call to ‘min(long unsigned int, unsigned int)’ 318 | it->second = static_cast(std::min(65534ul, it->second + minimiser_count)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algobase.h:233:5: note: candidate: ‘template constexpr const _Tp& std::min(const _Tp&, const _Tp&)’ 233 | min(const _Tp& __a, const _Tp& __b) | ^~~ /usr/include/c++/13/bits/stl_algobase.h:233:5: note: template argument deduction/substitution failed: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:318:72: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘unsigned int’) 318 | it->second = static_cast(std::min(65534ul, it->second + minimiser_count)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algobase.h:281:5: note: candidate: ‘template constexpr const _Tp& std::min(const _Tp&, const _Tp&, _Compare)’ 281 | min(const _Tp& __a, const _Tp& __b, _Compare __comp) | ^~~ /usr/include/c++/13/bits/stl_algobase.h:281:5: note: template argument deduction/substitution failed: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:318:72: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘unsigned int’) 318 | it->second = static_cast(std::min(65534ul, it->second + minimiser_count)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:5775:5: note: candidate: ‘template constexpr _Tp std::min(initializer_list<_Tp>)’ 5775 | min(initializer_list<_Tp> __l) | ^~~ /usr/include/c++/13/bits/stl_algo.h:5775:5: note: template argument deduction/substitution failed: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:318:72: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’ 318 | it->second = static_cast(std::min(65534ul, it->second + minimiser_count)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_algo.h:5785:5: note: candidate: ‘template constexpr _Tp std::min(initializer_list<_Tp>, _Compare)’ 5785 | min(initializer_list<_Tp> __l, _Compare __comp) | ^~~ /usr/include/c++/13/bits/stl_algo.h:5785:5: note: template argument deduction/substitution failed: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:318:72: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’ 318 | it->second = static_cast(std::min(65534ul, it->second + minimiser_count)); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp: In function ‘void delete_bin(const std::vector&, estimate_ibf_arguments&, std::filesystem::__cxx11::path, bool)’: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:1374:67: warning: narrowing conversion of ‘(__gnu_cxx::__alloc_traits, long long unsigned int>::value_type)(& delete_files)->std::vector::operator[](((std::vector::size_type)i))’ from ‘__gnu_cxx::__alloc_traits, long long unsigned int>::value_type’ {aka ‘long long unsigned int’} to ‘unsigned int’ [-Wnarrowing] 1374 | bins_to_delete.push_back(seqan3::bin_index{delete_files[i]}); | ^ /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp: In instantiation of ‘void ibf_helper(const std::vector&, const std::vector&, estimate_ibf_arguments&, std::vector&, size_t, std::filesystem::__cxx11::path, const minimiser_arguments&) [with bool samplewise = true; bool minimiser_files_given = false; size_t = unsigned int]’: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:987:32: required from here /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:828:69: warning: narrowing conversion of ‘size’ from ‘uint64_t’ {aka ‘long long unsigned int’} to ‘unsigned int’ [-Wnarrowing] 828 | seqan3::bin_count{num_files}, seqan3::bin_size{size}, | ^~~~ /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp: In instantiation of ‘void ibf_helper(const std::vector&, const std::vector&, estimate_ibf_arguments&, std::vector&, size_t, std::filesystem::__cxx11::path, const minimiser_arguments&) [with bool samplewise = false; bool minimiser_files_given = false; size_t = unsigned int]’: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:989:33: required from here /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:828:69: warning: narrowing conversion of ‘size’ from ‘uint64_t’ {aka ‘long long unsigned int’} to ‘unsigned int’ [-Wnarrowing] /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp: In instantiation of ‘void ibf_helper(const std::vector&, const std::vector&, estimate_ibf_arguments&, std::vector&, size_t, std::filesystem::__cxx11::path, const minimiser_arguments&) [with bool samplewise = true; bool minimiser_files_given = true; size_t = unsigned int]’: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:1009:25: required from here /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:828:69: warning: narrowing conversion of ‘size’ from ‘uint64_t’ {aka ‘long long unsigned int’} to ‘unsigned int’ [-Wnarrowing] /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp: In instantiation of ‘void ibf_helper(const std::vector&, const std::vector&, estimate_ibf_arguments&, std::vector&, size_t, std::filesystem::__cxx11::path, const minimiser_arguments&) [with bool samplewise = false; bool minimiser_files_given = true; size_t = unsigned int]’: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:1011:26: required from here /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:828:69: warning: narrowing conversion of ‘size’ from ‘uint64_t’ {aka ‘long long unsigned int’} to ‘unsigned int’ [-Wnarrowing] /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp: In instantiation of ‘void insert_helper(const std::vector&, estimate_ibf_arguments&, std::filesystem::__cxx11::path, std::vector&, std::filesystem::__cxx11::path, const minimiser_arguments&) [with bool samplewise = true; bool minimiser_files_given = false]’: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:1339:35: required from here /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:1227:61: warning: narrowing conversion of ‘pos_insert.std::vector::operator[](i)’ from ‘__gnu_cxx::__alloc_traits, long long unsigned int>::value_type’ {aka ‘long long unsigned int’} to ‘unsigned int’ [-Wnarrowing] 1227 | ibfs[j].emplace(elem.first, seqan3::bin_index{pos_insert[i]}); | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp: In instantiation of ‘void insert_helper(const std::vector&, estimate_ibf_arguments&, std::filesystem::__cxx11::path, std::vector&, std::filesystem::__cxx11::path, const minimiser_arguments&) [with bool samplewise = false; bool minimiser_files_given = false]’: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:1341:36: required from here /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:1236:61: warning: narrowing conversion of ‘pos_insert.std::vector::operator[](i)’ from ‘__gnu_cxx::__alloc_traits, long long unsigned int>::value_type’ {aka ‘long long unsigned int’} to ‘unsigned int’ [-Wnarrowing] 1236 | ibfs[j].emplace(elem.first, seqan3::bin_index{pos_insert[i]}); | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp: In instantiation of ‘void insert_helper(const std::vector&, estimate_ibf_arguments&, std::filesystem::__cxx11::path, std::vector&, std::filesystem::__cxx11::path, const minimiser_arguments&) [with bool samplewise = true; bool minimiser_files_given = true]’: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:1355:28: required from here /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:1227:61: warning: narrowing conversion of ‘pos_insert.std::vector::operator[](i)’ from ‘__gnu_cxx::__alloc_traits, long long unsigned int>::value_type’ {aka ‘long long unsigned int’} to ‘unsigned int’ [-Wnarrowing] 1227 | ibfs[j].emplace(elem.first, seqan3::bin_index{pos_insert[i]}); | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp: In instantiation of ‘void insert_helper(const std::vector&, estimate_ibf_arguments&, std::filesystem::__cxx11::path, std::vector&, std::filesystem::__cxx11::path, const minimiser_arguments&) [with bool samplewise = false; bool minimiser_files_given = true]’: /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:1357:29: required from here /build/reproducible-path/seqan-needle-1.0.2+ds/src/ibf.cpp:1236:61: warning: narrowing conversion of ‘pos_insert.std::vector::operator[](i)’ from ‘__gnu_cxx::__alloc_traits, long long unsigned int>::value_type’ {aka ‘long long unsigned int’} to ‘unsigned int’ [-Wnarrowing] 1236 | ibfs[j].emplace(elem.first, seqan3::bin_index{pos_insert[i]}); | ^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp: In instantiation of ‘const seqan3::interleaved_bloom_filter::membership_agent_type::binning_bitvector& seqan3::interleaved_bloom_filter::membership_agent_type::bulk_contains(size_t) & [with seqan3::data_layout data_layout_mode = seqan3::compressed; size_t = unsigned int]’: /build/reproducible-path/seqan-needle-1.0.2+ds/src/estimate.cpp:47:76: required from ‘void check_ibf(const min_arguments&, const IBFType&, std::vector&, seqan3::dna4_vector, std::vector&, const exp_t&, uint16_t, std::vector, std::vector >&) [with IBFType = seqan3::interleaved_bloom_filter; bool last_exp = true; bool normalization = true; exp_t = std::vector >; seqan3::dna4_vector = std::vector; uint16_t = short unsigned int]’ /build/reproducible-path/seqan-needle-1.0.2+ds/src/estimate.cpp:211:43: required from ‘void estimate(estimate_ibf_arguments&, IBFType&, std::filesystem::__cxx11::path, const estimate_arguments&) [with IBFType = seqan3::interleaved_bloom_filter; bool samplewise = true; bool normalization_method = true]’ /build/reproducible-path/seqan-needle-1.0.2+ds/src/estimate.cpp:280:104: required from here /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:652:24: error: narrowing conversion of ‘18446744073709551615’ from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} [-Wnarrowing] 652 | size_t tmp{-1ULL}; | ^~~~~ /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp: In instantiation of ‘const seqan3::interleaved_bloom_filter::membership_agent_type::binning_bitvector& seqan3::interleaved_bloom_filter::membership_agent_type::bulk_contains(size_t) & [with seqan3::data_layout data_layout_mode = seqan3::uncompressed; size_t = unsigned int]’: /build/reproducible-path/seqan-needle-1.0.2+ds/src/estimate.cpp:47:76: required from ‘void check_ibf(const min_arguments&, const IBFType&, std::vector&, seqan3::dna4_vector, std::vector&, const exp_t&, uint16_t, std::vector, std::vector >&) [with IBFType = seqan3::interleaved_bloom_filter; bool last_exp = true; bool normalization = true; exp_t = std::vector >; seqan3::dna4_vector = std::vector; uint16_t = short unsigned int]’ /build/reproducible-path/seqan-needle-1.0.2+ds/src/estimate.cpp:211:43: required from ‘void estimate(estimate_ibf_arguments&, IBFType&, std::filesystem::__cxx11::path, const estimate_arguments&) [with IBFType = seqan3::interleaved_bloom_filter; bool samplewise = true; bool normalization_method = true]’ /build/reproducible-path/seqan-needle-1.0.2+ds/src/estimate.cpp:295:106: required from here /usr/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:652:24: error: narrowing conversion of ‘18446744073709551615’ from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} [-Wnarrowing] make[4]: *** [src/CMakeFiles/needle_lib.dir/build.make:93: src/CMakeFiles/needle_lib.dir/estimate.cpp.o] Error 1 make[4]: *** Waiting for unfinished jobs.... make[4]: *** [src/CMakeFiles/needle_lib.dir/build.make:79: src/CMakeFiles/needle_lib.dir/ibf.cpp.o] Error 1 make[4]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-arm-linux-gnueabihf' make[3]: *** [CMakeFiles/Makefile2:245: src/CMakeFiles/needle_lib.dir/all] Error 2 make[3]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-arm-linux-gnueabihf' make[2]: *** [Makefile:124: all] Error 2 make[2]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds/obj-arm-linux-gnueabihf' dh_auto_build: error: cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2 make[1]: *** [debian/rules:19: override_dh_auto_build-arch] Error 25 make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.2+ds' make: *** [debian/rules:12: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4093 and its subdirectories Fri May 17 13:06:10 UTC 2024 W: No second build log, what happened?