Mon Mar 25 07:11:58 UTC 2024 I: starting to build scrm/trixie/armhf on jenkins on '2024-03-25 07:11' Mon Mar 25 07:11:58 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_21/824/console.log Mon Mar 25 07:11:58 UTC 2024 I: Downloading source for trixie/scrm=1.7.4-1 --2024-03-25 07:11:59-- http://deb.debian.org/debian/pool/main/s/scrm/scrm_1.7.4-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1927 (1.9K) [text/prs.lines.tag] Saving to: ‘scrm_1.7.4-1.dsc’ 0K . 100% 293M=0s 2024-03-25 07:11:59 (293 MB/s) - ‘scrm_1.7.4-1.dsc’ saved [1927/1927] Mon Mar 25 07:11:59 UTC 2024 I: scrm_1.7.4-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: scrm Binary: scrm Architecture: any Version: 1.7.4-1 Maintainer: Debian Med Packaging Team Uploaders: Kevin Murray Homepage: https://github.com/scrm/scrm Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/scrm Vcs-Git: https://salsa.debian.org/med-team/scrm.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libcppunit-dev Package-List: scrm deb science optional arch=any Checksums-Sha1: bd63f18a56490aa2cf8f1257840fff4b091266a1 341612 scrm_1.7.4.orig.tar.gz ed47f4a410696d4c80de62607b569d2249a8b537 4352 scrm_1.7.4-1.debian.tar.xz Checksums-Sha256: 13f4b0febabcdf6a2b478693febd2fb9d3f47532fb39ffaa4f01fe816f69ceb7 341612 scrm_1.7.4.orig.tar.gz c637c2fbb7098f1a0fc39e46fa9fc0813416f5e69d630dd406b074e173f8e64e 4352 scrm_1.7.4-1.debian.tar.xz Files: 50072fdd213bfae2529d949ac8bfe4bb 341612 scrm_1.7.4.orig.tar.gz 3eb569a33563d4fc2025e3bb02f4a839 4352 scrm_1.7.4-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/IoZoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFl7w//cGbinKckwFHvs3DcsA0yV4oVeuvff+PS sfTdcY2xy0dNxMsCaqGw91VhibonTwk85l72LWGtr6KhMz/MW+KLLqOalCMWI6TW S6Izrs3K15841bp+EdIZfCSKVsDeY5HWGI921IqcU4XXh69Lfkg4/dD1khSy7PpV iBiboL4AkoMepPQamPT/ivfbtiWnYEALzn3NAxpyNzzmmmolh2QNnZFAfmgFfAYx 41A7CN0pu/Y/aDCa51AqurVLCnDd6MaIK5UiQMNe7yMMCIF/Eym+EuBXMOI8L38o zpEt4FR7ZiCkdVKf8j+RohqaEEMMRd11yOBeK81dWHqWFwREUVYIusdHAf3y3fGv OhKQYECj3z4wJWNMsT/FWlU70VXANPtjVI6Wa9nXloo9ddJ1Dsp+iqmoQ3sjnFQs 3cTAKIAuYRO9D5mDECOs+Jv72MSSmtBAs0GPmAnrTnA6MCOHAOrya01s+WeB8tq2 GUzMEkbQdx1HGuKkjQcDQanc15vMsngT0RC2kqDeRWrEdHBFkefoaSg/m1tTh0n+ ql2Y8DPnrnILbMwCcIez0V7g0g9XWvL6MGcozGZ3S0QxU5cXaUKJw+rV3zXX5ioU f0u+/w2JGKzrAAgLHrYvqZBhqC8AOkb+fzb/z9qqcGkhv5K2w3mVDj9KQklW4QrY bxfr4w1/zac= =qTYk -----END PGP SIGNATURE----- Mon Mar 25 07:11:59 UTC 2024 I: Checking whether the package is not for us Mon Mar 25 07:11:59 UTC 2024 I: Starting 1st build on remote node cbxi4a-armhf-rb.debian.net. Mon Mar 25 07:11:59 UTC 2024 I: Preparing to do remote build '1' on cbxi4a-armhf-rb.debian.net. Mon Mar 25 07:26:08 UTC 2024 I: Deleting $TMPDIR on cbxi4a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Mar 24 19:12:07 -12 2024 I: pbuilder-time-stamp: 1711350727 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [scrm_1.7.4-1.dsc] I: copying [./scrm_1.7.4.orig.tar.gz] I: copying [./scrm_1.7.4-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Dec 3 08:28:10 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./scrm_1.7.4-1.dsc: no acceptable signature found dpkg-source: info: extracting scrm in scrm-1.7.4 dpkg-source: info: unpacking scrm_1.7.4.orig.tar.gz dpkg-source: info: unpacking scrm_1.7.4-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/32725/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='7fc60d1a4a5c43a491814e17774ba922' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='32725' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iaNufQKZ/pbuilderrc_gcwc --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iaNufQKZ/b1 --logfile b1/build.log scrm_1.7.4-1.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux cbxi4a 6.1.0-18-armmp #1 SMP Debian 6.1.76-1 (2024-02-01) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 24 11:27 /bin -> usr/bin I: user script /srv/workspace/pbuilder/32725/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libcppunit-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19577 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libcppunit-dev; however: Package libcppunit-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcppunit-1.15-0{a} libcppunit-dev{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 18.7 MB of archives. After unpacking 69.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-2+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic1 armhf 1:5.45-2+b1 [97.9 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-2+b1 [42.2 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-3 [1088 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.39.3-6 [81.2 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-1+b2 [33.4 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.0-3 [1367 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.14.1 [85.6 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main armhf libelf1 armhf 0.190-1+b1 [171 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1 [101 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b2 [599 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf debhelper all 13.14.1 [890 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libcppunit-1.15-0 armhf 1.15.1-4+b1 [140 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libcppunit-dev armhf 1.15.1-4+b1 [203 kB] Fetched 18.7 MB in 1s (14.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19577 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../02-libmagic1_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic1:armhf (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-2+b1_armhf.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_armhf.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-3_armhf.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.39.3-6_armhf.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.7-1+b2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1+b2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.0-3_armhf.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.14.1_all.deb ... Unpacking libdebhelper-perl (13.14.1) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../22-libelf1_0.190-1+b1_armhf.deb ... Unpacking libelf1:armhf (0.190-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../24-libicu72_72.1-4+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-4+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_armhf.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.14.1_all.deb ... Unpacking debhelper (13.14.1) ... Selecting previously unselected package libcppunit-1.15-0:armhf. Preparing to unpack .../30-libcppunit-1.15-0_1.15.1-4+b1_armhf.deb ... Unpacking libcppunit-1.15-0:armhf (1.15.1-4+b1) ... Selecting previously unselected package libcppunit-dev:armhf. Preparing to unpack .../31-libcppunit-dev_1.15.1-4+b1_armhf.deb ... Unpacking libcppunit-dev:armhf (1.15.1-4+b1) ... Setting up libpipeline1:armhf (1.5.7-1+b2) ... Setting up libcppunit-1.15-0:armhf (1.15.1-4+b1) ... Setting up libicu72:armhf (72.1-4+b1) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.14.1) ... Setting up libmagic1:armhf (1:5.45-2+b1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libcppunit-dev:armhf (1.15.1-4+b1) ... Setting up libelf1:armhf (0.190-1+b1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.14.1) ... Processing triggers for libc-bin (2.37-15) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/scrm-1.7.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../scrm_1.7.4-1_source.changes dpkg-buildpackage: info: source package scrm dpkg-buildpackage: info: source version 1.7.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/scrm.substvars debian/files rm -fr -- debian/scrm/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i configure.ac:28: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:28: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:28: the top level configure.ac:25: installing './compile' configure.ac:16: installing './config.guess' configure.ac:16: installing './config.sub' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after dh_auto_configure ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking for ranlib... ranlib checking whether make supports the include directive... yes (GNU style) checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking whether g++ supports C++11 features by default... yes checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for TestCase in -lcppunit... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... yes checking whether C++ compiler accepts -flto... yes checking CXXFLAGS for maximum warnings... -Wall checking whether C++ compiler accepts -Wextra... yes checking whether C++ compiler accepts -Wnon-virtual-dtor... yes checking whether C++ compiler accepts -Wcast-align... yes checking whether C++ compiler accepts -Wunused... yes checking whether C++ compiler accepts -Woverloaded-virtual... yes checking whether C++ compiler accepts -pedantic... yes checking whether C++ compiler accepts -Wcatch-value... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands dh_auto_build make -j3 make[1]: Entering directory '/build/reproducible-path/scrm-1.7.4' g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/scrm-scrm.o `test -f 'src/scrm.cc' || echo './'`src/scrm.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/scrm-param.o `test -f 'src/param.cc' || echo './'`src/param.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/scrm-forest.o `test -f 'src/forest.cc' || echo './'`src/forest.cc In file included from src/summary_statistics/../random/random_generator.h:32, from src/summary_statistics/../contemporaries_container.h:34, from src/summary_statistics/../forest.h:51, from src/summary_statistics/tmrca.h:31, from src/param.h:38, from src/scrm.cc:27: src/summary_statistics/../random/fastfunc.h: In member function 'FastFunc::fastlog(double)': src/summary_statistics/../random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float | ~^~~~~~ src/summary_statistics/../random/fastfunc.h:89:10: note: 'y' declared here 89 | double y = x; | ^ g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/scrm-node.o `test -f 'src/node.cc' || echo './'`src/node.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/scrm-node_container.o `test -f 'src/node_container.cc' || echo './'`src/node_container.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/scrm-time_interval.o `test -f 'src/time_interval.cc' || echo './'`src/time_interval.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/scrm-model.o `test -f 'src/model.cc' || echo './'`src/model.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/scrm-tree_point.o `test -f 'src/tree_point.cc' || echo './'`src/tree_point.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/random/scrm-random_generator.o `test -f 'src/random/random_generator.cc' || echo './'`src/random/random_generator.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/random/scrm-mersenne_twister.o `test -f 'src/random/mersenne_twister.cc' || echo './'`src/random/mersenne_twister.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/random/scrm-fastfunc.o `test -f 'src/random/fastfunc.cc' || echo './'`src/random/fastfunc.cc In file included from src/random/random_generator.h:32, from src/random/random_generator.cc:23: src/random/fastfunc.h: In member function 'FastFunc::fastlog(double)': src/random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float | ~^~~~~~ src/random/fastfunc.h:89:10: note: 'y' declared here 89 | double y = x; | ^ g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/scrm-tmrca.o `test -f 'src/summary_statistics/tmrca.cc' || echo './'`src/summary_statistics/tmrca.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/scrm-seg_sites.o `test -f 'src/summary_statistics/seg_sites.cc' || echo './'`src/summary_statistics/seg_sites.cc In file included from src/random/random_generator.h:32, from src/random/mersenne_twister.h:28, from src/random/mersenne_twister.cc:23: src/random/fastfunc.h: In member function 'FastFunc::fastlog(double)': src/random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float | ~^~~~~~ src/random/fastfunc.h:89:10: note: 'y' declared here 89 | double y = x; | ^ g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/scrm-frequency_spectrum.o `test -f 'src/summary_statistics/frequency_spectrum.cc' || echo './'`src/summary_statistics/frequency_spectrum.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/scrm-newick_tree.o `test -f 'src/summary_statistics/newick_tree.cc' || echo './'`src/summary_statistics/newick_tree.cc In file included from src/summary_statistics/../random/random_generator.h:32, from src/summary_statistics/../contemporaries_container.h:34, from src/summary_statistics/../forest.h:51, from src/summary_statistics/seg_sites.h:31, from src/summary_statistics/seg_sites.cc:22: src/summary_statistics/../random/fastfunc.h: In member function 'FastFunc::fastlog(double)': src/summary_statistics/../random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float | ~^~~~~~ src/summary_statistics/../random/fastfunc.h:89:10: note: 'y' declared here 89 | double y = x; | ^ g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/scrm-oriented_forest.o `test -f 'src/summary_statistics/oriented_forest.cc' || echo './'`src/summary_statistics/oriented_forest.cc g++ -DNDEBUG -flto -Wextra -Wnon-virtual-dtor -Wcast-align -Wunused -Woverloaded-virtual -pedantic -Wcatch-value -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wl,-z,relro -o scrm src/scrm-param.o src/scrm-forest.o src/scrm-node.o src/scrm-node_container.o src/scrm-time_interval.o src/scrm-model.o src/scrm-tree_point.o src/random/scrm-random_generator.o src/random/scrm-mersenne_twister.o src/random/scrm-fastfunc.o src/summary_statistics/scrm-tmrca.o src/summary_statistics/scrm-seg_sites.o src/summary_statistics/scrm-frequency_spectrum.o src/summary_statistics/scrm-newick_tree.o src/summary_statistics/scrm-oriented_forest.o src/scrm-scrm.o lto-wrapper: warning: using serial compilation of 2 LTRANS jobs lto-wrapper: note: see the '-flto' option documentation for more information make[1]: Leaving directory '/build/reproducible-path/scrm-1.7.4' dh_auto_test make -j3 test "TESTSUITEFLAGS=-j3 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/scrm-1.7.4' g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/unit_tests-param.o `test -f 'src/param.cc' || echo './'`src/param.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/unit_tests-forest.o `test -f 'src/forest.cc' || echo './'`src/forest.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/unit_tests-node.o `test -f 'src/node.cc' || echo './'`src/node.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/unit_tests-node_container.o `test -f 'src/node_container.cc' || echo './'`src/node_container.cc In file included from /usr/include/c++/13/vector:72, from src/node_container.h:28, from src/node_container.cc:23: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Node&}; _Tp = Node; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Node; _Alloc = std::allocator]', inlined from 'Node* NodeContainer::createNode(Node)' at src/node_container.h:112:45, inlined from 'NodeContainer::NodeContainer(const NodeContainer&)' at src/node_container.cc:59:34: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/unit_tests-time_interval.o `test -f 'src/time_interval.cc' || echo './'`src/time_interval.cc In file included from /usr/include/c++/13/vector:72, from src/forest.h:43, from src/forest.cc:23: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at src/forest.h:202:63, inlined from 'void Forest::clear()' at src/forest.cc:1258:22: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at src/forest.h:202:63, inlined from 'void Forest::sampleNextBase()' at src/forest.cc:1353:18: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at src/forest.h:202:63, inlined from 'void Forest::sampleNextBase()' at src/forest.cc:1357:18: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Node; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'Node* NodeContainer::createNode(double, size_t)' at src/node_container.h:87:45: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at src/forest.h:202:63, inlined from 'void Forest::readNewick(std::string&)' at src/forest.cc:1327:22: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from src/param.h:26, from src/param.cc:23: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at src/forest.h:202:63, inlined from 'void Forest::buildInitialTree()' at src/forest.cc:292:22: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'Model Param::parse()' at src/param.cc:214:38: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'Model Param::parse()' at src/param.cc:217:41: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/unit_tests-model.o `test -f 'src/model.cc' || echo './'`src/model.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/unit_tests-tree_point.o `test -f 'src/tree_point.cc' || echo './'`src/tree_point.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/random/unit_tests-random_generator.o `test -f 'src/random/random_generator.cc' || echo './'`src/random/random_generator.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/random/unit_tests-mersenne_twister.o `test -f 'src/random/mersenne_twister.cc' || echo './'`src/random/mersenne_twister.cc In file included from src/random/random_generator.h:32, from src/random/random_generator.cc:23: src/random/fastfunc.h: In member function 'double FastFunc::fastlog(double)': src/random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float | ~^~~~~~ src/random/fastfunc.h:89:10: note: 'y' declared here 89 | double y = x; | ^ g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/random/unit_tests-fastfunc.o `test -f 'src/random/fastfunc.cc' || echo './'`src/random/fastfunc.cc In file included from /usr/include/c++/13/vector:72, from src/model.h:38, from src/model.cc:22: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_insert_aux(iterator, _Arg&&) [with _Arg = double; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 413 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:133:5: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 133 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc:162:28: note: parameter passing for argument of type 'const __gnu_cxx::__normal_iterator >' changed in GCC 7.1 162 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc:170:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 170 | _M_realloc_insert(begin() + (__position - cbegin()), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/model.cc: In member function 'void Model::addPopToMatrixList(std::vector >&, size_t, double)': src/model.cc:641:17: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 641 | it->insert(it->begin() + getMigMatrixIndex(i, new_pop), default_value); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/model.cc:644:17: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 644 | it->insert(it->begin() + getMigMatrixIndex(new_pop, i), default_value); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Model::addSampleSizes(double, const std::vector&, const bool&)' at src/model.cc:170:30: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const MigEvent&}; _Tp = MigEvent; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from src/random/random_generator.h:32, from src/random/mersenne_twister.h:28, from src/random/mersenne_twister.cc:23: src/random/fastfunc.h: In member function 'double FastFunc::fastlog(double)': src/random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float | ~^~~~~~ src/random/fastfunc.h:89:10: note: 'y' declared here 89 | double y = x; | ^ src/model.cc: In member function 'size_t Model::addChangeTime(double, const bool&)': src/model.cc:109:23: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 109 | change_times_.insert(ti, time); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Model::addPopulationSizes(double, const std::vector&, const bool&, const bool&)' at src/model.cc:208:40: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Model::addGrowthRates(double, const std::vector&, const bool&, const bool&)' at src/model.cc:282:43: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = MigEvent; _Alloc = std::allocator]', inlined from 'void Model::addSingleMigrationEvent(double, size_t, size_t, double, const bool&)' at src/model.cc:447:42: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/unit_tests-tmrca.o `test -f 'src/summary_statistics/tmrca.cc' || echo './'`src/summary_statistics/tmrca.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/unit_tests-seg_sites.o `test -f 'src/summary_statistics/seg_sites.cc' || echo './'`src/summary_statistics/seg_sites.cc /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:356:5: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 356 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc:370:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 370 | _M_insert_aux(begin() + __n, std::move(__v)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc:372:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 372 | _M_realloc_insert(begin() + __n, std::move(__v)); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void Model::addMigrationRates(double, const std::vector&, const bool&, const bool&)' at src/model.cc:397:42: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void Model::addPopToVectorList(std::vector >&)' at src/model.cc:653:18: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'size_t Model::addChangePosition(double)' at src/model.cc:141:35: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'size_t Model::addChangePosition(double)' at src/model.cc:142:30: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/model.cc: In member function 'size_t Model::addChangePosition(double)': src/model.cc:154:26: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 154 | change_position_.insert(ti, position); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'size_t Model::addChangePosition(double)' at src/model.cc:157:30: /usr/include/c++/13/bits/stl_vector.h:1391:30: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 1391 | { return _M_insert_rval(__position, std::move(__x)); } | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'size_t Model::addChangePosition(double)' at src/model.cc:158:25: /usr/include/c++/13/bits/stl_vector.h:1391:30: note: parameter passing for argument of type 'std::vector::const_iterator' changed in GCC 7.1 1391 | { return _M_insert_rval(__position, std::move(__x)); } | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/unit_tests-frequency_spectrum.o `test -f 'src/summary_statistics/frequency_spectrum.cc' || echo './'`src/summary_statistics/frequency_spectrum.cc In file included from /usr/include/c++/13/vector:72, from src/summary_statistics/tmrca.h:28, from src/summary_statistics/tmrca.cc:22: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual void TMRCA::calculate(const Forest&)' at src/summary_statistics/tmrca.cc:26:19, inlined from 'virtual void TMRCA::calculate(const Forest&)' at src/summary_statistics/tmrca.cc:24:6: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual void TMRCA::calculate(const Forest&)' at src/summary_statistics/tmrca.cc:27:25, inlined from 'virtual void TMRCA::calculate(const Forest&)' at src/summary_statistics/tmrca.cc:24:6: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/summary_statistics/../random/random_generator.h:32, from src/summary_statistics/../contemporaries_container.h:34, from src/summary_statistics/../forest.h:51, from src/summary_statistics/seg_sites.h:31, from src/summary_statistics/seg_sites.cc:22: src/summary_statistics/../random/fastfunc.h: In member function 'double FastFunc::fastlog(double)': src/summary_statistics/../random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float | ~^~~~~~ src/summary_statistics/../random/fastfunc.h:89:10: note: 'y' declared here 89 | double y = x; | ^ g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/unit_tests-newick_tree.o `test -f 'src/summary_statistics/newick_tree.cc' || echo './'`src/summary_statistics/newick_tree.cc In file included from /usr/include/c++/13/vector:72, from src/summary_statistics/../forest.h:43: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual void SegSites::calculate(const Forest&)' at src/summary_statistics/seg_sites.cc:35:23: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'virtual void SegSites::calculate(const Forest&)' at src/summary_statistics/seg_sites.cc:38:27: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'virtual void SegSites::calculate(const Forest&)' at src/summary_statistics/seg_sites.cc:40:27: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/summary_statistics/unit_tests-oriented_forest.o `test -f 'src/summary_statistics/oriented_forest.cc' || echo './'`src/summary_statistics/oriented_forest.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/random/unit_tests-constant_generator.o `test -f 'src/random/constant_generator.cc' || echo './'`src/random/constant_generator.cc In file included from src/random/random_generator.h:32, from src/random/constant_generator.h:29, from src/random/constant_generator.cc:23: src/random/fastfunc.h: In member function 'double FastFunc::fastlog(double)': src/random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float | ~^~~~~~ src/random/fastfunc.h:89:10: note: 'y' declared here 89 | double y = x; | ^ g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o src/unit_tests-forest-debug.o `test -f 'src/forest-debug.cc' || echo './'`src/forest-debug.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_time_interval.o `test -f 'tests/unittests/test_time_interval.cc' || echo './'`tests/unittests/test_time_interval.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_fastfunc.o `test -f 'tests/unittests/test_fastfunc.cc' || echo './'`tests/unittests/test_fastfunc.cc src/forest-debug.cc: In member function 'bool Forest::checkInvariants(const Node*) const': src/forest-debug.cc:172:14: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 172 | okay *= checkInvariants(*it); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ src/forest-debug.cc: In member function 'bool Forest::checkTree(const Node*) const': src/forest-debug.cc:254:36: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 254 | if ( (*it)->is_root() ) good *= checkTree(*it); | ~~~~~^~~~~~~~~~~~~~~~~ src/forest-debug.cc:257:10: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 257 | good *= this->checkInvariants(); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ src/forest-debug.cc:258:10: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 258 | good *= this->checkNodeProperties(); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/forest-debug.cc:259:10: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 259 | good *= this->checkTreeLength(); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ src/forest-debug.cc:260:10: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context] 260 | good *= this->checkRoots(); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from tests/unittests/test_fastfunc.cc:4: tests/unittests/../../src/random/fastfunc.h: In member function 'double FastFunc::fastlog(double)': tests/unittests/../../src/random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float | ~^~~~~~ tests/unittests/../../src/random/fastfunc.h:89:10: note: 'y' declared here 89 | double y = x; | ^ In file included from tests/unittests/../../src/random/random_generator.h:32, from tests/unittests/../../src/contemporaries_container.h:34, from tests/unittests/../../src/forest.h:51, from tests/unittests/test_time_interval.cc:7: tests/unittests/../../src/random/fastfunc.h: In member function 'double FastFunc::fastlog(double)': tests/unittests/../../src/random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float | ~^~~~~~ tests/unittests/../../src/random/fastfunc.h:89:10: note: 'y' declared here 89 | double y = x; | ^ g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_param.o `test -f 'tests/unittests/test_param.cc' || echo './'`tests/unittests/test_param.cc In file included from /usr/include/c++/13/vector:72, from src/forest.h:43, from src/forest-debug.cc:19: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Node; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'Node* NodeContainer::createNode(double, size_t)' at src/node_container.h:87:45: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void Forest::createExampleTree()' at src/forest-debug.cc:33:29: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /usr/include/c++/13/functional:64, from /usr/include/cppunit/TestCaller.h:7, from /usr/include/cppunit/extensions/HelperMacros.h:9, from tests/unittests/test_time_interval.cc:5: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Node; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'Node* NodeContainer::createNode(double, size_t)' at tests/unittests/../../src/node_container.h:87:45: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_random_generator.o `test -f 'tests/unittests/test_random_generator.cc' || echo './'`tests/unittests/test_random_generator.cc In file included from tests/unittests/../../src/random/random_generator.h:32, from tests/unittests/../../src/random/mersenne_twister.h:28, from tests/unittests/test_random_generator.cc:6: tests/unittests/../../src/random/fastfunc.h: In member function 'double FastFunc::fastlog(double)': tests/unittests/../../src/random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float | ~^~~~~~ tests/unittests/../../src/random/fastfunc.h:89:10: note: 'y' declared here 89 | double y = x; | ^ g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_summary_statistics.o `test -f 'tests/unittests/test_summary_statistics.cc' || echo './'`tests/unittests/test_summary_statistics.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_contemporaries_container.o `test -f 'tests/unittests/test_contemporaries_container.cc' || echo './'`tests/unittests/test_contemporaries_container.cc In file included from tests/unittests/../../src/random/random_generator.h:32, from tests/unittests/../../src/contemporaries_container.h:34, from tests/unittests/../../src/forest.h:51, from tests/unittests/test_summary_statistics.cc:9: tests/unittests/../../src/random/fastfunc.h: In member function 'double FastFunc::fastlog(double)': tests/unittests/../../src/random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float | ~^~~~~~ tests/unittests/../../src/random/fastfunc.h:89:10: note: 'y' declared here 89 | double y = x; | ^ In file included from tests/unittests/../../src/random/random_generator.h:32, from tests/unittests/../../src/contemporaries_container.h:34, from tests/unittests/test_contemporaries_container.cc:4: tests/unittests/../../src/random/fastfunc.h: In member function 'double FastFunc::fastlog(double)': tests/unittests/../../src/random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float | ~^~~~~~ tests/unittests/../../src/random/fastfunc.h:89:10: note: 'y' declared here 89 | double y = x; | ^ In file included from /usr/include/c++/13/vector:72, from /usr/include/c++/13/functional:64, from /usr/include/cppunit/TestCaller.h:7, from /usr/include/cppunit/extensions/HelperMacros.h:9, from tests/unittests/test_summary_statistics.cc:5: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In file included from /usr/include/c++/13/vector:72, from /usr/include/c++/13/functional:64, from /usr/include/cppunit/TestCaller.h:7, from /usr/include/cppunit/extensions/HelperMacros.h:9, from tests/unittests/test_contemporaries_container.cc:2: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Node; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'Node* NodeContainer::createNode(double, size_t)' at tests/unittests/../../src/node_container.h:87:45: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestSummaryStatistics::testTMRCA()' at tests/unittests/test_summary_statistics.cc:53:26: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestSummaryStatistics::testNewickTree()' at tests/unittests/test_summary_statistics.cc:303:26: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestSummaryStatistics::testNewickTree()' at tests/unittests/test_summary_statistics.cc:326:26: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestSummaryStatistics::testNewickTree()' at tests/unittests/test_summary_statistics.cc:337:26: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestSummaryStatistics::testOrientedForest()' at tests/unittests/test_summary_statistics.cc:279:26: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestSummaryStatistics::testSiteFrequencies()' at tests/unittests/test_summary_statistics.cc:203:26: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void TestSummaryStatistics::testSiteFrequencies()' at tests/unittests/test_summary_statistics.cc:206:36: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void TestSummaryStatistics::testSiteFrequencies()' at tests/unittests/test_summary_statistics.cc:207:36: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void TestSummaryStatistics::testSiteFrequencies()' at tests/unittests/test_summary_statistics.cc:208:36: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void TestSummaryStatistics::testSiteFrequencies()' at tests/unittests/test_summary_statistics.cc:228:36: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestSummaryStatistics::testSiteFrequencies()' at tests/unittests/test_summary_statistics.cc:242:26: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestSummaryStatistics::testSegSitesCalculate()' at tests/unittests/test_summary_statistics.cc:139:26: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void TestSummaryStatistics::testSegSitesCalculate()' at tests/unittests/test_summary_statistics.cc:144:35: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void TestSummaryStatistics::testSegSitesCalculate()' at tests/unittests/test_summary_statistics.cc:145:35: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void TestSummaryStatistics::testSegSitesCalculate()' at tests/unittests/test_summary_statistics.cc:146:35: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_forest.o `test -f 'tests/unittests/test_forest.cc' || echo './'`tests/unittests/test_forest.cc g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_model.o `test -f 'tests/unittests/test_model.cc' || echo './'`tests/unittests/test_model.cc In file included from tests/unittests/../../src/random/random_generator.h:32, from tests/unittests/../../src/contemporaries_container.h:34, from tests/unittests/../../src/forest.h:51, from tests/unittests/test_forest.cc:3: tests/unittests/../../src/random/fastfunc.h: In member function 'double FastFunc::fastlog(double)': tests/unittests/../../src/random/fastfunc.h:91:17: warning: 'y' is used uninitialized [-Wuninitialized] 91 | int expon = ((*yint) >> 52) - 1023; // base-2 exponent of float | ~^~~~~~ tests/unittests/../../src/random/fastfunc.h:89:10: note: 'y' declared here 89 | double y = x; | ^ g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_node.o `test -f 'tests/unittests/test_node.cc' || echo './'`tests/unittests/test_node.cc In file included from /usr/include/c++/13/vector:72, from /usr/include/c++/13/functional:64, from /usr/include/cppunit/TestCaller.h:7, from /usr/include/cppunit/extensions/HelperMacros.h:9, from tests/unittests/test_forest.cc:1: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Node; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'Node* NodeContainer::createNode(double, size_t)' at tests/unittests/../../src/node_container.h:87:45: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /usr/include/c++/13/functional:64, from /usr/include/cppunit/TestCaller.h:7, from /usr/include/cppunit/extensions/HelperMacros.h:9, from tests/unittests/test_model.cc:7: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:66: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestForest::testCalcRecombinationRate()' at tests/unittests/test_forest.cc:436:26: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestForest::testPrintLocusSumStats()' at tests/unittests/test_forest.cc:849:26: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /usr/include/c++/13/functional:64, from /usr/include/cppunit/TestCaller.h:7, from /usr/include/cppunit/extensions/HelperMacros.h:9, from tests/unittests/test_node.cc:5: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Node; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'Node* NodeContainer::createNode(double, size_t)' at tests/unittests/../../src/node_container.h:87:45: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestForest::testCopyConstructor()' at tests/unittests/test_forest.cc:805:26: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void TestModel::testPopSizeAfterGrowth()' at tests/unittests/test_model.cc:515:27: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void TestModel::testPopSizeAfterGrowth()' at tests/unittests/test_model.cc:516:27: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void TestModel::testPopSizeAfterGrowth()' at tests/unittests/test_model.cc:539:27: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void TestModel::testPopSizeAfterGrowth()' at tests/unittests/test_model.cc:540:27: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestForest::testSampleEventType()' at tests/unittests/test_forest.cc:326:27: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestForest::testSampleEventType()' at tests/unittests/test_forest.cc:365:27: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestForest::testSampleEventType()' at tests/unittests/test_forest.cc:366:27: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void TestModel::testAddMigRates()' at tests/unittests/test_model.cc:239:22: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void TestModel::testAddMigRates()' at tests/unittests/test_model.cc:242:20: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void TestModel::testAddGrowthRates()' at tests/unittests/test_model.cc:206:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void TestModel::testAddGrowthRates()' at tests/unittests/test_model.cc:207:28: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestForest::testPrune()' at tests/unittests/test_forest.cc:535:26: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestForest::testPrune()' at tests/unittests/test_forest.cc:572:26: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/unittests/unit_tests-test_node_container.o `test -f 'tests/unittests/test_node_container.cc' || echo './'`tests/unittests/test_node_container.cc In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void TestModel::testAddPopulationSizes()' at tests/unittests/test_model.cc:164:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'void TestModel::testAddPopulationSizes()' at tests/unittests/test_model.cc:165:25: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestForest::testNodeIsOld()' at tests/unittests/test_forest.cc:489:26: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestForest::testNodeIsOld()' at tests/unittests/test_forest.cc:513:26: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestForest::testNodeIsOld()' at tests/unittests/test_forest.cc:515:26: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]', inlined from 'void Forest::set_next_base(double)' at tests/unittests/../../src/forest.h:202:63, inlined from 'void TestForest::testNodeIsOld()' at tests/unittests/test_forest.cc:523:26: /usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/13/vector:72, from /usr/include/c++/13/functional:64, from /usr/include/cppunit/TestCaller.h:7, from /usr/include/cppunit/extensions/HelperMacros.h:9, from tests/unittests/test_node_container.cc:6: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Node}; _Tp = Node; _Alloc = std::allocator]', inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Node; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1296:21, inlined from 'Node* NodeContainer::createNode(double, size_t)' at tests/unittests/../../src/node_container.h:87:45: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"scrm\" -DPACKAGE_TARNAME=\"scrm\" -DPACKAGE_VERSION=\"1.7.4\" -DPACKAGE_STRING=\"scrm\ 1.7.4\" -DPACKAGE_BUGREPORT=\"https://github.com/paulstaab/scrm/issues\" -DPACKAGE_URL=\"\" -DPACKAGE=\"scrm\" -DVERSION=\"1.7.4\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -c -o tests/cppunit/unit_tests-test_runner.o `test -f 'tests/cppunit/test_runner.cc' || echo './'`tests/cppunit/test_runner.cc g++ -g -DUNITTEST -DNDEBUG -g -O2 -ffile-prefix-map=/build/reproducible-path/scrm-1.7.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wl,-z,relro -o unit_tests src/unit_tests-param.o src/unit_tests-forest.o src/unit_tests-node.o src/unit_tests-node_container.o src/unit_tests-time_interval.o src/unit_tests-model.o src/unit_tests-tree_point.o src/random/unit_tests-random_generator.o src/random/unit_tests-mersenne_twister.o src/random/unit_tests-fastfunc.o src/summary_statistics/unit_tests-tmrca.o src/summary_statistics/unit_tests-seg_sites.o src/summary_statistics/unit_tests-frequency_spectrum.o src/summary_statistics/unit_tests-newick_tree.o src/summary_statistics/unit_tests-oriented_forest.o src/random/unit_tests-constant_generator.o src/unit_tests-forest-debug.o tests/unittests/unit_tests-test_forest.o tests/unittests/unit_tests-test_model.o tests/unittests/unit_tests-test_node.o tests/unittests/unit_tests-test_node_container.o tests/cppunit/unit_tests-test_runner.o tests/unittests/unit_tests-test_time_interval.o tests/unittests/unit_tests-test_fastfunc.o tests/unittests/unit_tests-test_param.o tests/unittests/unit_tests-test_random_generator.o tests/unittests/unit_tests-test_summary_statistics.o tests/unittests/unit_tests-test_contemporaries_container.o -L/opt/local/lib -lcppunit -ldl ./unit_tests TestContemporariesContainer::add : OK TestContemporariesContainer::remove : OK TestContemporariesContainer::clear : OK TestContemporariesContainer::iterator : OK TestContemporariesContainer::sample : OK TestContemporariesContainer::buffer : OK TestContemporariesContainer::empty : OK TestFastFunc::testlog : OK TestFastFunc::testexp : OK TestForest::testInitialization : OK TestForest::testGettersAndSetters : OK TestForest::testCreateExampleTree : OK TestForest::testCheckTreeLength : OK TestForest::testGetFirstNode : OK TestForest::testSamplePoint : OK TestForest::testCalcRecombinationRate : OK TestForest::testCalcRate : OK TestForest::testCalcRateWithArachicSamples : OK TestForest::testNodeIsOld : OK TestForest::testPrune : OK TestForest::testSelectFirstTime : OK TestForest::testSampleEventType : OK TestForest::testSampleEvent : OK TestForest::testGetNodeState : OK TestForest::testCut : OK TestForest::testImplementCoalescence : OK TestForest::testBuildInitialTree : OK TestForest::testImplementRecombination : OK TestForest::testImplementFixTimeEvent : OK TestForest::testPrintTree : OK TestForest::testCopyConstructor : OK TestForest::testCheckForNodeAtHeight : OK TestForest::testPrintLocusSumStats : OK TestForest::testSampleNextPosition : OK TestForest::testClear : OK TestModel::testSetGetMutationRate : OK TestModel::testAddChangePositions : OK TestModel::testSetGetRecombinationRate : OK TestModel::testGetPopulationSize : OK TestModel::testAddChangeTime : OK TestModel::testAddSampleSizes : OK TestModel::testAddPopulationSizes : OK TestModel::testAddRelativePopulationSizes : OK TestModel::testAddGrowthRates : OK TestModel::testAddMigRates : OK TestModel::testAddMigRate : OK TestModel::testDebugConstructor : OK TestModel::testIncreaseTime : OK TestModel::testGetNextTime : OK TestModel::testGetters : OK TestModel::testHasFixedTimeEvent : OK TestModel::testCheck : OK TestModel::testPopSizeAfterGrowth : OK TestModel::testAddSummaryStatistic : OK TestModel::testSetLocusLength : OK TestModel::testAddPopToVectorList : OK TestModel::testAddPopToMatrixList : OK TestNode::testGettersAndSetters : OK TestNode::testIsRoot : OK TestNode::testInSample : OK TestNode::testSamplesBelow : OK TestNode::testLengthBelow : OK TestNode::testCountChildren : OK TestNode::testLocalNavigation : OK TestNodeContainer::testGet : OK TestNodeContainer::testAdd : OK TestNodeContainer::testNodeIterator : OK TestNodeContainer::testNodeIteratorHeight : OK TestNodeContainer::testReverseIterator : OK TestNodeContainer::testRemove : OK TestNodeContainer::testMove : OK TestNodeContainer::testCopyConstructor : OK TestNodeContainer::testClear : OK TestNodeContainer::testMemoryAllocation : OK TestParam::testMainConstructor : OK TestParam::testStringConstructor : OK TestParam::testParseBasicCmdStructure : OK TestParam::testParseSeeds : OK TestParam::testParseCommonOptions : OK TestParam::testParseMigrationOptions : OK TestParam::testParseMergeOptions : OK TestParam::testParseSplitOptions : OK TestParam::testParseOutputOptions : OK TestParam::testParseGrowthOptions : OK TestParam::testParseVariableRates : OK TestParam::testParseUnsupportedMsArguments : OK TestParam::testParseSequenceScaling : OK TestParam::testErrorOnInfintieRecRate : OK TestParam::testScientificNotation : OK TestParam::testApproximation : OK TestParam::testTransposeSegSites : OK TestParam::testNoMigrationBeforePopSetup : OK TestRandomGenerator::testConstructor : OK TestRandomGenerator::testSampleExpoLimit : OK TestRandomGenerator::testSampleUnitExpo : OK TestRandomGenerator::testSampleExpo : OK TestRandomGenerator::testSampleExpoExpoLimit : OK TestRandomGenerator::testSampleInt : OK TestRandomGenerator::testSeeding : OK TestSummaryStatistics::testTMRCA : OK TestSummaryStatistics::testSegSitesTraversal : OK TestSummaryStatistics::testSegSitesGetHaplotypes : OK TestSummaryStatistics::testSegSitesCalculate : OK TestSummaryStatistics::testSiteFrequencies : OK TestSummaryStatistics::testOrientedForestGenerateTreeData : OK TestSummaryStatistics::testOrientedForest : OK TestSummaryStatistics::testNewickTree : OK TestTimeInterval::testIteratorCreation : OK TestTimeInterval::testIteratorNext : OK TestTimeInterval::testIteratorCreationWithTimeFrames : OK TestTimeInterval::testIteratorNextWithTimeFrames : OK TestTimeInterval::testSplitIntervall : OK TestTimeInterval::testRecalculateTI : OK TestTimeInterval::testFindContemporaries : OK OK (114) make[1]: Leaving directory '/build/reproducible-path/scrm-1.7.4' rm -fr -- /tmp/dh-xdg-rundir-kCrbtYb6 create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/scrm.substvars rm -fr -- debian/.debhelper/generated/scrm/ debian/scrm/ debian/tmp/ dh_auto_install --destdir=debian/scrm/ install -m0755 -d /build/reproducible-path/scrm-1.7.4/debian/scrm make -j3 install DESTDIR=/build/reproducible-path/scrm-1.7.4/debian/scrm AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/scrm-1.7.4' make[2]: Entering directory '/build/reproducible-path/scrm-1.7.4' /usr/bin/mkdir -p '/build/reproducible-path/scrm-1.7.4/debian/scrm/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/scrm-1.7.4/debian/scrm/usr/share/man/man1' /usr/bin/install -c scrm '/build/reproducible-path/scrm-1.7.4/debian/scrm/usr/bin' /usr/bin/install -c -m 644 doc/scrm.1 '/build/reproducible-path/scrm-1.7.4/debian/scrm/usr/share/man/man1' make[2]: Leaving directory '/build/reproducible-path/scrm-1.7.4' make[1]: Leaving directory '/build/reproducible-path/scrm-1.7.4' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/scrm-1.7.4' find tests \( -name "*.o" -o -name .dirstamp \) -delete find tests -name .deps -type d | xargs rm -rf dh_install make[1]: Leaving directory '/build/reproducible-path/scrm-1.7.4' dh_installdocs install -m0755 -d debian/scrm/usr/share/doc/scrm install -m0755 -d debian/scrm/usr/share/doc/scrm cp --reflink=auto -a ./NEWS.md debian/scrm/usr/share/doc/scrm cp --reflink=auto -a ./README.md debian/scrm/usr/share/doc/scrm cp --reflink=auto -a ./debian/README.test debian/scrm/usr/share/doc/scrm chmod -R u\+rw,go=rX debian/scrm/usr/share/doc install -p -m0644 debian/copyright debian/scrm/usr/share/doc/scrm/copyright dh_installchangelogs install -m0755 -d debian/scrm/usr/share/doc/scrm install -p -m0644 debian/.debhelper/generated/scrm/dh_installchangelogs.dch.trimmed debian/scrm/usr/share/doc/scrm/changelog.Debian dh_installman man-recode --to-code UTF-8 --suffix .dh-new debian/scrm/usr/share/man/man1/scrm.1 mv debian/scrm/usr/share/man/man1/scrm.1.dh-new debian/scrm/usr/share/man/man1/scrm.1 chmod 0644 -- debian/scrm/usr/share/man/man1/scrm.1 dh_perl dh_link dh_strip_nondeterminism rm -f debian/scrm.debhelper.log debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/scrm-1.7.4' dh_compress --exclude=run-unit-test cd debian/scrm chmod a-x usr/share/doc/scrm/NEWS.md usr/share/doc/scrm/changelog.Debian usr/share/man/man1/scrm.1 gzip -9nf usr/share/doc/scrm/NEWS.md usr/share/doc/scrm/changelog.Debian usr/share/man/man1/scrm.1 cd '/build/reproducible-path/scrm-1.7.4' make[1]: Leaving directory '/build/reproducible-path/scrm-1.7.4' dh_fixperms find debian/scrm ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/scrm/usr/share/doc -type f -a -true -a ! -regex 'debian/scrm/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/scrm/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/scrm/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/scrm -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/scrm/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz -a dwz -- debian/scrm/usr/bin/scrm dh_strip -a install -m0755 -d debian/.debhelper/scrm/dbgsym-root/usr/lib/debug/.build-id/7a objcopy --only-keep-debug --compress-debug-sections debian/scrm/usr/bin/scrm debian/.debhelper/scrm/dbgsym-root/usr/lib/debug/.build-id/7a/c2c76ec6220ca93cd7ac4ccba789cbf1d89294.debug chmod 0644 -- debian/.debhelper/scrm/dbgsym-root/usr/lib/debug/.build-id/7a/c2c76ec6220ca93cd7ac4ccba789cbf1d89294.debug strip --remove-section=.comment --remove-section=.note debian/scrm/usr/bin/scrm objcopy --add-gnu-debuglink debian/.debhelper/scrm/dbgsym-root/usr/lib/debug/.build-id/7a/c2c76ec6220ca93cd7ac4ccba789cbf1d89294.debug debian/scrm/usr/bin/scrm install -m0755 -d debian/.debhelper/scrm/dbgsym-root/usr/share/doc ln -s scrm debian/.debhelper/scrm/dbgsym-root/usr/share/doc/scrm-dbgsym install -m0755 -d debian/.debhelper/scrm dh_makeshlibs -a rm -f debian/scrm/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/scrm/DEBIAN dpkg-shlibdeps -Tdebian/scrm.substvars debian/scrm/usr/bin/scrm dh_installdeb install -m0755 -d debian/scrm/DEBIAN dh_gencontrol install -m0755 -d debian/scrm/DEBIAN echo misc:Depends= >> debian/scrm.substvars echo misc:Pre-Depends= >> debian/scrm.substvars install -m0755 -d debian/.debhelper/scrm/dbgsym-root/DEBIAN dpkg-gencontrol -pscrm -ldebian/changelog -Tdebian/scrm.substvars -Pdebian/.debhelper/scrm/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=scrm-dbgsym "-DDepends=scrm (= \${binary:Version})" "-DDescription=debug symbols for scrm" -DBuild-Ids=7ac2c76ec6220ca93cd7ac4ccba789cbf1d89294 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/scrm/dbgsym-root/DEBIAN/control dpkg-gencontrol -pscrm -ldebian/changelog -Tdebian/scrm.substvars -Pdebian/scrm chmod 0644 -- debian/scrm/DEBIAN/control dh_md5sums install -m0755 -d debian/scrm/DEBIAN cd debian/scrm >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/scrm/DEBIAN/md5sums install -m0755 -d debian/.debhelper/scrm/dbgsym-root/DEBIAN cd debian/.debhelper/scrm/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/scrm/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/scrm .. dpkg-deb --root-owner-group --build debian/.debhelper/scrm/dbgsym-root .. dpkg-deb: building package 'scrm-dbgsym' in '../scrm-dbgsym_1.7.4-1_armhf.deb'. dpkg-deb: building package 'scrm' in '../scrm_1.7.4-1_armhf.deb'. dpkg-genbuildinfo --build=binary -O../scrm_1.7.4-1_armhf.buildinfo dpkg-genchanges --build=binary -O../scrm_1.7.4-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/32725 and its subdirectories I: Current time: Sun Mar 24 19:26:01 -12 2024 I: pbuilder-time-stamp: 1711351561 Mon Mar 25 07:26:11 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ff64a-armhf-rb.debian.net. Mon Mar 25 07:26:11 UTC 2024 I: Preparing to do remote build '2' on ff64a-armhf-rb.debian.net. Mon Mar 25 07:34:09 UTC 2024 I: Deleting $TMPDIR on ff64a-armhf-rb.debian.net. Mon Mar 25 07:34:11 UTC 2024 I: scrm_1.7.4-1_armhf.changes: Format: 1.8 Date: Wed, 02 Dec 2020 21:34:16 +0100 Source: scrm Binary: scrm scrm-dbgsym Architecture: armhf Version: 1.7.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: scrm - simulator of evolution of genetic sequences Changes: scrm (1.7.4-1) unstable; urgency=medium . * Team upload. . [ Steffen Möller ] * Update metadata with ref to conda * Update metadata - latexification . [ Samyak Jain ] * Switch d/watch version to 4 * New upstream version 1.7.4 * Bumps standard version and remove d/compat (use debhelper-compat instead) * Adds autopkgtest * Document how users can test their local installation * Add debian/salsa-ci.yml * Properly install tests data in examples package . [ Andreas Tille ] * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database, Bug-Submit. * Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Fix autopkgtest Checksums-Sha1: ab9368b1b4987391738468a4a3bcfde302758596 1115424 scrm-dbgsym_1.7.4-1_armhf.deb fe7c26ac6b657c730c48ef14251b3c8945cb0531 5298 scrm_1.7.4-1_armhf.buildinfo c1c85911259fd58c2fc08627311d994a037566e8 58592 scrm_1.7.4-1_armhf.deb Checksums-Sha256: 4d9a5b6e6624f78930f09f1a52c629856a7d6331e436f775c73065910d9e7244 1115424 scrm-dbgsym_1.7.4-1_armhf.deb e700a3cf7ed98741cf907957dbf3471c9e6066af9642a893fd2906ff5859f27a 5298 scrm_1.7.4-1_armhf.buildinfo 0207c2abc5b70e9a8c6514bb1db41e79f54dc4f78c7d36024d27fdc1ff214b90 58592 scrm_1.7.4-1_armhf.deb Files: 32f1982f9abe08cfd6eebd374307b45e 1115424 debug optional scrm-dbgsym_1.7.4-1_armhf.deb 6d6c6fa8ed4c1a33d94d80fd39c9d9d1 5298 science optional scrm_1.7.4-1_armhf.buildinfo 9d5aff18caea6250548e7f78c45b4874 58592 science optional scrm_1.7.4-1_armhf.deb Mon Mar 25 07:34:12 UTC 2024 I: diffoscope 261 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_21-824.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.iaNufQKZ/scrm_1.7.4-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.iaNufQKZ/scrm_1.7.4-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.iaNufQKZ/scrm_1.7.4-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.iaNufQKZ/b1/scrm_1.7.4-1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.iaNufQKZ/b2/scrm_1.7.4-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.358s) 0.358s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.030s) 0.030s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 662ms CPU time consumed: 662ms Mon Mar 25 07:34:13 UTC 2024 I: diffoscope 261 found no differences in the changes files, and a .buildinfo file also exists. Mon Mar 25 07:34:13 UTC 2024 I: scrm from trixie built successfully and reproducibly on armhf. Mon Mar 25 07:34:15 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Mar 25 07:34:15 UTC 2024 I: Submitting 8.0K b1/scrm_1.7.4-1_armhf.buildinfo.asc Mon Mar 25 07:34:15 UTC 2024 I: Submitting 8.0K b2/scrm_1.7.4-1_armhf.buildinfo.asc Mon Mar 25 07:34:16 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Mar 25 07:34:16 UTC 2024 I: Done submitting .buildinfo files. Mon Mar 25 07:34:16 UTC 2024 I: Removing signed scrm_1.7.4-1_armhf.buildinfo.asc files: removed './b1/scrm_1.7.4-1_armhf.buildinfo.asc' removed './b2/scrm_1.7.4-1_armhf.buildinfo.asc'