Wed May 8 16:22:26 UTC 2024 I: starting to build racon/trixie/armhf on jenkins on '2024-05-08 16:22' Wed May 8 16:22:26 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_18/3713/console.log Wed May 8 16:22:26 UTC 2024 I: Downloading source for trixie/racon=1.5.0-3 --2024-05-08 16:22:26-- http://deb.debian.org/debian/pool/main/r/racon/racon_1.5.0-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2106 (2.1K) [text/prs.lines.tag] Saving to: ‘racon_1.5.0-3.dsc’ 0K .. 100% 323M=0s 2024-05-08 16:22:26 (323 MB/s) - ‘racon_1.5.0-3.dsc’ saved [2106/2106] Wed May 8 16:22:26 UTC 2024 I: racon_1.5.0-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: racon Binary: racon Architecture: any Version: 1.5.0-3 Maintainer: Debian Med Packaging Team Uploaders: Cédric Lood , Andreas Tille Homepage: https://github.com/lbcb-sci/racon Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/racon Vcs-Git: https://salsa.debian.org/med-team/racon.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler Package-List: racon deb science optional arch=any Checksums-Sha1: c508bea6f7b627e1796f2017669a8e99ed548ddd 3084154 racon_1.5.0.orig.tar.gz 5d5d6ba7f343bf6ee3124a052eb1858b9431dbf1 20652 racon_1.5.0-3.debian.tar.xz Checksums-Sha256: 58fdbbd88f0990b18e3139280aa4fa81e138a9cf0761edd66c43982af784d395 3084154 racon_1.5.0.orig.tar.gz 87ebd723dfb828888b59a5ed30143aa24ec3798c933f41e00196dacc3874d911 20652 racon_1.5.0-3.debian.tar.xz Files: de1982c33464fc7cec8a172931a6cf00 3084154 racon_1.5.0.orig.tar.gz face5096f46b2ce6c9c836bb01cf1603 20652 racon_1.5.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmM1k2ERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHvaQ/+N79w1AElJT5zodwml2cN53AhsH46O5QP JzGAY+aYLx/AZ9C6VIbd6eiTsZ+qNDSWLqqd/ABykcNbZEA+dBiRpX08U4/5OCNi zhXwtP+rO9w0znNpX6S8jUHMnC9yFlwW4t/1GmNAZ42byGm1vA5/6IXTkg2icHL0 8SSvibSqiZgNhiitaMPnKs1fSQA2ymTONHczdKuSRjTzpVkADmdpQch3j0TwZmF5 /hcYo4651y2NbVVJRbTEwPNoDXUE3TaXo0UZVojz5sOYHDQBGcbrai64O7ycB7Pd w+y3JfPaHzfRm23vsnO6PbpG+GFOflG54PIlNHa0Z90QHGZSlZym2gjvU36M2fa9 t3ZMnBLcUBkvTPWJeis9H3mv1/gmFtomkxf0cMz928nSwO8P1MvhoyrCu66q7PzO sOI8KxZ4tdbz+JvwHaa/FBrwl+n1krpXMD8PwoGxsLrY0a/gErVXooD3YoeTzv6d U/xsrofS7jo8CIaWTT2aMoK5JN5YRbk12zH2hWnJw/7XOKBcnTbIhQjRpf4AwfjS X8IJf9txoPJEn1atb/Af7F4FqOmMoAwlDsJPrftzo9bPpfaUocqekHZZJsMro9Xi fbm+SfYqW1SkeLNSR2twNJG1r+eZm6dNsipnerAsTGM7ejcAoyu0LjtZnpoGgS/5 41EO1XUq4VQ= =933u -----END PGP SIGNATURE----- Wed May 8 16:22:26 UTC 2024 I: Checking whether the package is not for us Wed May 8 16:22:26 UTC 2024 I: Starting 1st build on remote node ff64a-armhf-rb.debian.net. Wed May 8 16:22:26 UTC 2024 I: Preparing to do remote build '1' on ff64a-armhf-rb.debian.net. Wed May 8 17:27:20 UTC 2024 I: Deleting $TMPDIR on ff64a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 8 04:22:35 -12 2024 I: pbuilder-time-stamp: 1715185355 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [racon_1.5.0-3.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Sep 29 12:45:21 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: no acceptable signature found dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2761/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='afb1a6029ab64b908bcaa2d316727e68' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2761' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4afJXjzD/pbuilderrc_eA25 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4afJXjzD/b1 --logfile b1/build.log racon_1.5.0-3.dsc' SUDO_GID='114' SUDO_UID='109' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux ff64a 6.1.0-21-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 6 11:27 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2761/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19444 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1t64{a} libsub-override-perl{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx psmisc publicsuffix wget 0 packages upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 31.1 MB of archives. After unpacking 118 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libproc2-0 armhf 2:4.0.4-4 [55.7 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf procps armhf 2:4.0.4-4 [864 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-4 [1090 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40-8 [85.6 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.1-1 [1375 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b3 [598 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libarchive13t64 armhf 3.7.2-2 [304 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.20.1-6+b1 [30.6 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.1~rc2-1 [21.8 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.20.1-6+b1 [75.5 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 26 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.20.1-6+b1 [290 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.20.1-6+b1 [112 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.61.0-1+b1 [64.1 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [53.2 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.0-4.1+b2 [198 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libcurl4t64 armhf 8.7.1-3 [391 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libjsoncpp25 armhf 1.9.5-6+b2 [69.9 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf librhash0 armhf 1.4.3-3+b1 [143 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libuv1t64 armhf 1.48.0-1.1 [134 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf cmake-data all 3.29.2-2 [2167 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf cmake armhf 3.29.2-2 [5215 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 46 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf googletest all 1.14.0-1 [512 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf libbiosoup-dev all 0.11.0-2 [8000 B] Get: 54 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1 [904 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libbioparser-dev all 3.1.0-1 [9108 B] Get: 56 http://deb.debian.org/debian trixie/main armhf rapidjson-dev all 1.1.0+dfsg2-7.2 [97.8 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf libcereal-dev armhf 1.3.2+dfsg-5 [221 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf libedlib1 armhf 1.2.7-5 [14.6 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf libedlib-dev armhf 1.2.7-5 [19.8 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf libgtest-dev armhf 1.14.0-1+b1 [240 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libspoa7.0.0 armhf 4.1.4-1 [59.9 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libspoa-dev armhf 4.1.4-1 [9388 B] Get: 63 http://deb.debian.org/debian trixie/main armhf libthread-pool-dev armhf 4.0.0-2 [7304 B] Get: 64 http://deb.debian.org/debian trixie/main armhf rampler armhf 2.1.1-1 [19.3 kB] Fetched 31.1 MB in 1s (34.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19444 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_armhf.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_armhf.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14+b1_armhf.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-4_armhf.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40-8_armhf.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../10-libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.12.1-1_armhf.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (3.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf # Somehow the means in the patch for CMakeLists.txt to replace -lpthread by -pthread to not work # Just hack it here sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake cd obj-arm-linux-gnueabihf && make -j5 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start 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-I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp [ 50%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp /build/reproducible-path/racon-1.5.0/src/overlap.cpp: In member function 'virtual void racon::Overlap::align_overlaps(const char*, uint32_t, const char*, uint32_t)': /build/reproducible-path/racon-1.5.0/src/overlap.cpp:219:48: warning: format '%zu' expects argument of type 'size_t', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 219 | "edlib unable to align pair (%zu x %zu)!\n", q_id_, t_id_); | ~~^ ~~~~~ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu /build/reproducible-path/racon-1.5.0/src/overlap.cpp:219:54: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 219 | "edlib unable to align pair (%zu x %zu)!\n", q_id_, t_id_); | ~~^ ~~~~~ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu /build/reproducible-path/racon-1.5.0/src/window.cpp: In member function 'bool racon::Window::generate_consensus(std::shared_ptr, bool)': /build/reproducible-path/racon-1.5.0/src/window.cpp:142:27: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 142 | "contig %lu might be chimeric in window %u!\n", id_, rank_); | ~~^ ~~~ | | | | long unsigned int uint64_t {aka long long unsigned int} | %llu [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libracon.a CMakeFiles/racon.dir/src/logger.cpp.o CMakeFiles/racon.dir/src/polisher.cpp.o CMakeFiles/racon.dir/src/overlap.cpp.o CMakeFiles/racon.dir/src/sequence.cpp.o CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/ranlib lib/libracon.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' [ 60%] Built target racon make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/depend make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf/CMakeFiles/racon_exe.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf/CMakeFiles/racon_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' [ 70%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o /usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 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CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' [ 90%] Built target racon_exe [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_test.dir/test/racon_test.cpp.o -o bin/racon_test lib/libracon.a -ledlib -lspoa -pthread -lz /usr/lib/arm-linux-gnueabihf/libgtest_main.a /usr/lib/arm-linux-gnueabihf/libgtest.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' [100%] Built target racon_test make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (7 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (5 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (8 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (17 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (16 ms) [----------] 5 tests from RaconInitializeTest (56 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.006097 s [racon::Polisher::initialize] loaded sequences 0.217822 s [racon::Polisher::initialize] loaded overlaps 0.002559 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.214512 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.298623 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.421718 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.556032 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.652005 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.683449 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.824318 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.942312 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.068065 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.165861 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.307785 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.433885 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.565211 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.639099 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.741079 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.840076 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.997651 s [racon::Polisher::initialize] aligning overlaps [==================> ] 2.113479 s [racon::Polisher::initialize] aligning overlaps [===================>] 2.240011 s [racon::Polisher::initialize] aligning overlaps [====================] 2.294019 s [racon::Polisher::initialize] transformed data into windows 0.022633 s [racon::Polisher::polish] generating consensus [=> ] 1.899041 s [racon::Polisher::polish] generating consensus [==> ] 3.904017 s [racon::Polisher::polish] generating consensus [===> ] 5.867351 s [racon::Polisher::polish] generating consensus [====> ] 7.153550 s [racon::Polisher::polish] generating consensus [=====> ] 7.754187 s [racon::Polisher::polish] generating consensus [======> ] 8.610834 s [racon::Polisher::polish] generating consensus [=======> ] 9.417485 s [racon::Polisher::polish] generating consensus [========> ] 10.285193 s [racon::Polisher::polish] generating consensus [=========> ] 11.052082 s [racon::Polisher::polish] generating consensus [==========> ] 13.142400 s [racon::Polisher::polish] generating consensus [===========> ] 15.030315 s [racon::Polisher::polish] generating consensus [============> ] 18.086620 s [racon::Polisher::polish] generating consensus [=============> ] 21.538718 s [racon::Polisher::polish] generating consensus [==============> ] 25.465588 s [racon::Polisher::polish] generating consensus [===============> ] 27.137996 s [racon::Polisher::polish] generating consensus [================> ] 27.520607 s [racon::Polisher::polish] generating consensus [=================> ] 27.523771 s [racon::Polisher::polish] generating consensus [==================> ] 27.763162 s [racon::Polisher::polish] generating consensus [===================>] 28.659873 s [racon::Polisher::polish] generating consensus [====================] 31.943243 s [racon::Polisher::] total = 34.601416 s [ OK ] RaconPolishingTest.ConsensusWithQualities (34654 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.002888 s [racon::Polisher::initialize] loaded sequences 0.102755 s [racon::Polisher::initialize] loaded overlaps 0.001688 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.182626 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.284201 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.423216 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.535938 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.669083 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.783854 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.053401 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.188472 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.297083 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.390762 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.522423 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.636179 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.764502 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.829979 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.914906 s [racon::Polisher::initialize] aligning overlaps [================> ] 2.065067 s [racon::Polisher::initialize] aligning overlaps [=================> ] 2.129975 s [racon::Polisher::initialize] aligning overlaps [==================> ] 2.234487 s [racon::Polisher::initialize] aligning overlaps [===================>] 2.288732 s [racon::Polisher::initialize] aligning overlaps [====================] 2.314118 s [racon::Polisher::initialize] transformed data into windows 0.004156 s [racon::Polisher::polish] generating consensus [=> ] 2.068885 s [racon::Polisher::polish] generating consensus [==> ] 4.564525 s [racon::Polisher::polish] generating consensus [===> ] 6.986185 s [racon::Polisher::polish] generating consensus [====> ] 8.532449 s [racon::Polisher::polish] generating consensus [=====> ] 9.515667 s [racon::Polisher::polish] generating consensus [======> ] 10.607598 s [racon::Polisher::polish] generating consensus [=======> ] 11.621651 s [racon::Polisher::polish] generating consensus [========> ] 12.732714 s [racon::Polisher::polish] generating consensus [=========> ] 14.312831 s [racon::Polisher::polish] generating consensus [==========> ] 16.789856 s [racon::Polisher::polish] generating consensus [===========> ] 19.716460 s [racon::Polisher::polish] generating consensus [============> ] 23.364187 s [racon::Polisher::polish] generating consensus [=============> ] 27.660469 s [racon::Polisher::polish] generating consensus [==============> ] 30.833732 s [racon::Polisher::polish] generating consensus [===============> ] 32.836180 s [racon::Polisher::polish] generating consensus [================> ] 34.951735 s [racon::Polisher::polish] generating consensus [=================> ] 36.717624 s [racon::Polisher::polish] generating consensus [==================> ] 38.111958 s [racon::Polisher::polish] generating consensus [===================>] 39.203978 s [racon::Polisher::polish] generating consensus [====================] 43.862835 s [racon::Polisher::] total = 46.387195 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (46431 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.002892 s [racon::Polisher::initialize] loaded sequences 0.203816 s [racon::Polisher::initialize] loaded overlaps 0.126091 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.015790 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.016834 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.018498 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.020215 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.020997 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.022855 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.024462 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.026211 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.027683 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.029160 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.030658 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.032129 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.032596 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.032639 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.033598 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.033905 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.033951 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.033992 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.034692 s [racon::Polisher::initialize] aligning overlaps [====================] 0.034741 s [racon::Polisher::initialize] transformed data into windows 0.008242 s [racon::Polisher::polish] generating consensus [=> ] 1.761655 s [racon::Polisher::polish] generating consensus [==> ] 3.630824 s [racon::Polisher::polish] generating consensus [===> ] 5.547131 s [racon::Polisher::polish] generating consensus [====> ] 6.752080 s [racon::Polisher::polish] generating consensus [=====> ] 7.649431 s [racon::Polisher::polish] generating consensus [======> ] 8.439474 s [racon::Polisher::polish] generating consensus [=======> ] 9.192394 s [racon::Polisher::polish] generating consensus [========> ] 10.163958 s [racon::Polisher::polish] generating consensus [=========> ] 11.267049 s [racon::Polisher::polish] generating consensus [==========> ] 12.608377 s [racon::Polisher::polish] generating consensus [===========> ] 14.960458 s [racon::Polisher::polish] generating consensus [============> ] 17.891471 s [racon::Polisher::polish] generating consensus [=============> ] 21.815615 s [racon::Polisher::polish] generating consensus [==============> ] 25.945810 s [racon::Polisher::polish] generating consensus [===============> ] 25.948395 s [racon::Polisher::polish] generating consensus [================> ] 26.343266 s [racon::Polisher::polish] generating consensus [=================> ] 28.646059 s [racon::Polisher::polish] generating consensus [==================> ] 28.648654 s [racon::Polisher::polish] generating consensus [===================>] 28.651205 s [racon::Polisher::polish] generating consensus [====================] 30.629710 s [racon::Polisher::] total = 31.108008 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (31150 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.002856 s [racon::Polisher::initialize] loaded sequences 0.096770 s [racon::Polisher::initialize] loaded overlaps 0.121146 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.011349 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.014731 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.014787 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.014827 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.016868 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.019223 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.021372 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.023555 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.023937 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.023993 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.024045 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.025048 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.025867 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.026728 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.028056 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.028747 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.028807 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.029947 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.030009 s [racon::Polisher::initialize] aligning overlaps [====================] 0.030392 s [racon::Polisher::initialize] transformed data into windows 0.002348 s [racon::Polisher::polish] generating consensus [=> ] 2.167058 s [racon::Polisher::polish] generating consensus [==> ] 4.571039 s [racon::Polisher::polish] generating consensus [===> ] 6.074516 s [racon::Polisher::polish] generating consensus [====> ] 7.622515 s [racon::Polisher::polish] generating consensus [=====> ] 8.694868 s [racon::Polisher::polish] generating consensus [======> ] 9.422126 s [racon::Polisher::polish] generating consensus [=======> ] 10.594192 s [racon::Polisher::polish] generating consensus [========> ] 11.865284 s [racon::Polisher::polish] generating consensus [=========> ] 14.527596 s [racon::Polisher::polish] generating consensus [==========> ] 16.055592 s [racon::Polisher::polish] generating consensus [===========> ] 18.616845 s [racon::Polisher::polish] generating consensus [============> ] 21.183457 s [racon::Polisher::polish] generating consensus [=============> ] 25.284283 s [racon::Polisher::polish] generating consensus [==============> ] 29.225718 s [racon::Polisher::polish] generating consensus [===============> ] 31.264740 s [racon::Polisher::polish] generating consensus [================> ] 32.366115 s [racon::Polisher::polish] generating consensus [=================> ] 33.749014 s [racon::Polisher::polish] generating consensus [==================> ] 35.951712 s [racon::Polisher::polish] generating consensus [===================>] 36.632998 s [racon::Polisher::polish] generating consensus [====================] 40.880242 s [racon::Polisher::] total = 41.212034 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (41258 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.002872 s [racon::Polisher::initialize] loaded sequences 0.202552 s [racon::Polisher::initialize] loaded overlaps 0.001684 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.198764 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.302419 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.404465 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.535938 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.630710 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.659780 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.825779 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.041568 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.095154 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.228201 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.319941 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.503148 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.730512 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.775115 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.968137 s [racon::Polisher::initialize] aligning overlaps [================> ] 2.063149 s [racon::Polisher::initialize] aligning overlaps [=================> ] 2.235173 s [racon::Polisher::initialize] aligning overlaps [==================> ] 2.391169 s [racon::Polisher::initialize] aligning overlaps [===================>] 2.403129 s [racon::Polisher::initialize] aligning overlaps [====================] 2.481996 s [racon::Polisher::initialize] transformed data into windows 0.020736 s [racon::Polisher::polish] generating consensus [=> ] 5.679738 s [racon::Polisher::polish] generating consensus [==> ] 6.333037 s [racon::Polisher::polish] generating consensus [===> ] 11.403633 s [racon::Polisher::polish] generating consensus [====> ] 11.623638 s [racon::Polisher::polish] generating consensus [=====> ] 12.967631 s [racon::Polisher::polish] generating consensus [======> ] 13.911636 s [racon::Polisher::polish] generating consensus [=======> ] 15.419719 s [racon::Polisher::polish] generating consensus [========> ] 17.167761 s [racon::Polisher::polish] generating consensus [=========> ] 18.959669 s [racon::Polisher::polish] generating consensus [==========> ] 24.299654 s [racon::Polisher::polish] generating consensus [===========> ] 25.284790 s [racon::Polisher::polish] generating consensus [============> ] 32.003654 s [racon::Polisher::polish] generating consensus [=============> ] 38.231599 s [racon::Polisher::polish] generating consensus [==============> ] 40.003667 s [racon::Polisher::polish] generating consensus [===============> ] 47.143676 s [racon::Polisher::polish] generating consensus [================> ] 47.631816 s [racon::Polisher::polish] generating consensus [=================> ] 55.182908 s [racon::Polisher::polish] generating consensus [==================> ] 55.182999 s [racon::Polisher::polish] generating consensus [===================>] 60.255623 s [racon::Polisher::polish] generating consensus [====================] 68.459580 s [racon::Polisher::] total = 71.305059 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (71439 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.004328 s [racon::Polisher::initialize] loaded sequences 0.287722 s [racon::Polisher::initialize] loaded overlaps 0.002753 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.193258 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.301207 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.429338 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.540749 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.650535 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.762327 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.032758 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.164758 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.276766 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.372771 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.508730 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.624741 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.752749 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.822456 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.910437 s [racon::Polisher::initialize] aligning overlaps [================> ] 2.070541 s [racon::Polisher::initialize] aligning overlaps [=================> ] 2.135769 s [racon::Polisher::initialize] aligning overlaps [==================> ] 2.245875 s [racon::Polisher::initialize] aligning overlaps [===================>] 2.405818 s [racon::Polisher::initialize] aligning overlaps [====================] 2.555881 s [racon::Polisher::initialize] transformed data into windows 0.022484 s [racon::Polisher::polish] generating consensus [=> ] 2.209797 s [racon::Polisher::polish] generating consensus [==> ] 4.141733 s [racon::Polisher::polish] generating consensus [===> ] 5.537690 s [racon::Polisher::polish] generating consensus [====> ] 7.793782 s [racon::Polisher::polish] generating consensus [=====> ] 8.705716 s [racon::Polisher::polish] generating consensus [======> ] 9.489745 s [racon::Polisher::polish] generating consensus [=======> ] 10.197722 s [racon::Polisher::polish] generating consensus [========> ] 11.066910 s [racon::Polisher::polish] generating consensus [=========> ] 12.350854 s [racon::Polisher::polish] generating consensus [==========> ] 13.610796 s [racon::Polisher::polish] generating consensus [===========> ] 16.038792 s [racon::Polisher::polish] generating consensus [============> ] 18.762941 s [racon::Polisher::polish] generating consensus [=============> ] 22.141739 s [racon::Polisher::polish] generating consensus [==============> ] 26.177573 s [racon::Polisher::polish] generating consensus [===============> ] 28.373404 s [racon::Polisher::polish] generating consensus [================> ] 29.420038 s [racon::Polisher::polish] generating consensus [=================> ] 30.691498 s [racon::Polisher::polish] generating consensus [==================> ] 31.217151 s [racon::Polisher::polish] generating consensus [===================>] 31.703182 s [racon::Polisher::polish] generating consensus [====================] 35.136339 s [racon::Polisher::] total = 38.110294 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (38166 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.203076 s [racon::Polisher::initialize] loaded sequences 0.208878 s [racon::Polisher::initialize] loaded overlaps 0.058357 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.182573 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.382558 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.450491 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.574523 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.662306 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.757321 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.814027 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.904979 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.003087 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.150479 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.282940 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.522577 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.682577 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.820113 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.909106 s [racon::Polisher::initialize] aligning overlaps [================> ] 2.028715 s [racon::Polisher::initialize] aligning overlaps [=================> ] 2.160687 s [racon::Polisher::initialize] aligning overlaps [==================> ] 2.397998 s [racon::Polisher::initialize] aligning overlaps [===================>] 2.536561 s [racon::Polisher::initialize] aligning overlaps [====================] 2.601697 s [racon::Polisher::initialize] transformed data into windows 0.039338 s [racon::Polisher::polish] generating consensus [=> ] 1.663393 s [racon::Polisher::polish] generating consensus [==> ] 3.086589 s [racon::Polisher::polish] generating consensus [===> ] 4.483909 s [racon::Polisher::polish] generating consensus [====> ] 4.486985 s [racon::Polisher::polish] generating consensus [=====> ] 5.398670 s [racon::Polisher::polish] generating consensus [======> ] 6.003294 s [racon::Polisher::polish] generating consensus [=======> ] 6.899271 s [racon::Polisher::polish] generating consensus [========> ] 6.900682 s [racon::Polisher::polish] generating consensus [=========> ] 8.979282 s [racon::Polisher::polish] generating consensus [==========> ] 9.694468 s [racon::Polisher::polish] generating consensus [===========> ] 10.311024 s [racon::Polisher::polish] generating consensus [============> ] 10.514418 s [racon::Polisher::polish] generating consensus [=============> ] 11.462976 s [racon::Polisher::polish] generating consensus [==============> ] 11.466068 s [racon::Polisher::polish] generating consensus [===============> ] 13.030875 s [racon::Polisher::polish] generating consensus [================> ] 13.034691 s [racon::Polisher::polish] generating consensus [=================> ] 14.720790 s [racon::Polisher::polish] generating consensus [==================> ] 14.869527 s [racon::Polisher::polish] generating consensus [===================>] 15.246745 s [racon::Polisher::polish] generating consensus [====================] 15.249071 s [racon::Polisher::] total = 18.365941 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (18413 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.202252 s [racon::Polisher::initialize] loaded sequences 0.207788 s [racon::Polisher::initialize] loaded overlaps 0.056157 s [racon::Polisher::initialize] aligning overlaps [=> ] 3.277768 s [racon::Polisher::initialize] aligning overlaps [==> ] 5.398162 s [racon::Polisher::initialize] aligning overlaps [===> ] 7.386527 s [racon::Polisher::initialize] aligning overlaps [====> ] 10.343040 s [racon::Polisher::initialize] aligning overlaps [=====> ] 12.595232 s [racon::Polisher::initialize] aligning overlaps [======> ] 14.613247 s [racon::Polisher::initialize] aligning overlaps [=======> ] 17.172341 s [racon::Polisher::initialize] aligning overlaps [========> ] 19.532256 s [racon::Polisher::initialize] aligning overlaps [=========> ] 22.456235 s [racon::Polisher::initialize] aligning overlaps [==========> ] 25.189850 s [racon::Polisher::initialize] aligning overlaps [===========> ] 27.228320 s [racon::Polisher::initialize] aligning overlaps [============> ] 30.188268 s [racon::Polisher::initialize] aligning overlaps [=============> ] 33.004333 s [racon::Polisher::initialize] aligning overlaps [==============> ] 35.260246 s [racon::Polisher::initialize] aligning overlaps [===============> ] 38.468308 s [racon::Polisher::initialize] aligning overlaps [================> ] 41.152244 s [racon::Polisher::initialize] aligning overlaps [=================> ] 43.589432 s [racon::Polisher::initialize] aligning overlaps [==================> ] 46.488703 s [racon::Polisher::initialize] aligning overlaps [===================>] 49.416240 s [racon::Polisher::initialize] aligning overlaps [====================] 51.232039 s [racon::Polisher::initialize] transformed data into windows 0.366411 s [racon::Polisher::polish] generating consensus [=> ] 62.923639 s [racon::Polisher::polish] generating consensus [==> ] 112.761709 s [racon::Polisher::polish] generating consensus [===> ] 171.692482 s [racon::Polisher::polish] generating consensus [====> ] 208.425285 s [racon::Polisher::polish] generating consensus [=====> ] 256.545563 s [racon::Polisher::polish] generating consensus [======> ] 305.492488 s [racon::Polisher::polish] generating consensus [=======> ] 364.996471 s [racon::Polisher::polish] generating consensus [========> ] 415.133282 s [racon::Polisher::polish] generating consensus [=========> ] 470.149696 s [racon::Polisher::polish] generating consensus [==========> ] 510.157546 s [racon::Polisher::polish] generating consensus [===========> ] 550.161015 s [racon::Polisher::polish] generating consensus [============> ] 613.159489 s [racon::Polisher::polish] generating consensus [=============> ] 662.845851 s [racon::Polisher::polish] generating consensus [==============> ] 694.703611 s [racon::Polisher::polish] generating consensus [===============> ] 757.288053 s [racon::Polisher::polish] generating consensus [================> ] 794.365043 s [racon::Polisher::polish] generating consensus [=================> ] 848.900464 s [racon::Polisher::polish] generating consensus [==================> ] 884.953923 s [racon::Polisher::polish] generating consensus [===================>] 896.210202 s [racon::Polisher::polish] generating consensus [====================] 905.855728 s [racon::Polisher::] total = 957.939798 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (957997 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.095612 s [racon::Polisher::initialize] loaded sequences 0.096183 s [racon::Polisher::initialize] loaded overlaps 0.055688 s [racon::Polisher::initialize] aligning overlaps [=> ] 3.182730 s [racon::Polisher::initialize] aligning overlaps [==> ] 5.457653 s [racon::Polisher::initialize] aligning overlaps [===> ] 7.678699 s [racon::Polisher::initialize] aligning overlaps [====> ] 10.585488 s [racon::Polisher::initialize] aligning overlaps [=====> ] 13.135026 s [racon::Polisher::initialize] aligning overlaps [======> ] 14.981106 s [racon::Polisher::initialize] aligning overlaps [=======> ] 17.440677 s [racon::Polisher::initialize] aligning overlaps [========> ] 20.552954 s [racon::Polisher::initialize] aligning overlaps [=========> ] 23.433108 s [racon::Polisher::initialize] aligning overlaps [==========> ] 26.317843 s [racon::Polisher::initialize] aligning overlaps [===========> ] 28.569632 s [racon::Polisher::initialize] aligning overlaps [============> ] 31.700642 s [racon::Polisher::initialize] aligning overlaps [=============> ] 34.885216 s [racon::Polisher::initialize] aligning overlaps [==============> ] 37.519307 s [racon::Polisher::initialize] aligning overlaps [===============> ] 41.159140 s [racon::Polisher::initialize] aligning overlaps [================> ] 43.878836 s [racon::Polisher::initialize] aligning overlaps [=================> ] 45.648334 s [racon::Polisher::initialize] aligning overlaps [==================> ] 46.301863 s [racon::Polisher::initialize] aligning overlaps [===================>] 46.988679 s [racon::Polisher::initialize] aligning overlaps [====================] 47.608614 s [racon::Polisher::initialize] transformed data into windows 0.094298 s [racon::Polisher::polish] generating consensus [=> ] 102.352950 s [racon::Polisher::polish] generating consensus [==> ] 156.389639 s [racon::Polisher::polish] generating consensus [===> ] 221.852364 s [racon::Polisher::polish] generating consensus [====> ] 284.425053 s [racon::Polisher::polish] generating consensus [=====> ] 356.857526 s [racon::Polisher::polish] generating consensus [======> ] 414.424430 s [racon::Polisher::polish] generating consensus [=======> ] 481.552499 s [racon::Polisher::polish] generating consensus [========> ] 551.742418 s [racon::Polisher::polish] generating consensus [=========> ] 628.584481 s [racon::Polisher::polish] generating consensus [==========> ] 725.198495 s [racon::Polisher::polish] generating consensus [===========> ] 793.751308 s [racon::Polisher::polish] generating consensus [============> ] 870.880587 s [racon::Polisher::polish] generating consensus [=============> ] 932.452968 s [racon::Polisher::polish] generating consensus [==============> ] 999.524426 s [racon::Polisher::polish] generating consensus [===============> ] 1048.944474 s [racon::Polisher::polish] generating consensus [================> ] 1068.741721 s [racon::Polisher::polish] generating consensus [=================> ] 1109.922395 s [racon::Polisher::polish] generating consensus [==================> ] 1211.096549 s [racon::Polisher::polish] generating consensus [===================>] 1240.280846 s [racon::Polisher::polish] generating consensus [====================] 1269.697281 s [racon::Polisher::] total = 1317.677016 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (1317730 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.365836 s [racon::Polisher::initialize] loaded sequences 0.355687 s [racon::Polisher::initialize] loaded overlaps 0.067509 s [racon::Polisher::initialize] aligning overlaps [=> ] 6.801924 s [racon::Polisher::initialize] aligning overlaps [==> ] 10.430053 s [racon::Polisher::initialize] aligning overlaps [===> ] 13.914052 s [racon::Polisher::initialize] aligning overlaps [====> ] 18.350070 s [racon::Polisher::initialize] aligning overlaps [=====> ] 21.650019 s [racon::Polisher::initialize] aligning overlaps [======> ] 24.917995 s [racon::Polisher::initialize] aligning overlaps [=======> ] 28.801994 s [racon::Polisher::initialize] aligning overlaps [========> ] 34.589928 s [racon::Polisher::initialize] aligning overlaps [=========> ] 38.078685 s [racon::Polisher::initialize] aligning overlaps [==========> ] 40.914667 s [racon::Polisher::initialize] aligning overlaps [===========> ] 43.142002 s [racon::Polisher::initialize] aligning overlaps [============> ] 46.390434 s [racon::Polisher::initialize] aligning overlaps [=============> ] 49.605928 s [racon::Polisher::initialize] aligning overlaps [==============> ] 52.238009 s [racon::Polisher::initialize] aligning overlaps [===============> ] 55.997949 s [racon::Polisher::initialize] aligning overlaps [================> ] 59.417965 s [racon::Polisher::initialize] aligning overlaps [=================> ] 62.214648 s [racon::Polisher::initialize] aligning overlaps [==================> ] 65.253986 s [racon::Polisher::initialize] aligning overlaps [===================>] 68.799057 s [racon::Polisher::initialize] aligning overlaps [====================] 71.875002 s [racon::Polisher::initialize] transformed data into windows 0.260606 s [racon::Polisher::polish] generating consensus [=> ] 72.908731 s [racon::Polisher::polish] generating consensus [==> ] 143.148793 s [racon::Polisher::polish] generating consensus [===> ] 189.996761 s [racon::Polisher::polish] generating consensus [====> ] 238.640856 s [racon::Polisher::polish] generating consensus [=====> ] 302.444839 s [racon::Polisher::polish] generating consensus [======> ] 358.304215 s [racon::Polisher::polish] generating consensus [=======> ] 405.509254 s [racon::Polisher::polish] generating consensus [========> ] 443.557429 s [racon::Polisher::polish] generating consensus [=========> ] 496.084803 s [racon::Polisher::polish] generating consensus [==========> ] 562.339597 s [racon::Polisher::polish] generating consensus [===========> ] 599.479506 s [racon::Polisher::polish] generating consensus [============> ] 658.312978 s [racon::Polisher::polish] generating consensus [=============> ] 714.544783 s [racon::Polisher::polish] generating consensus [==============> ] 773.181472 s [racon::Polisher::polish] generating consensus [===============> ] 818.504755 s [racon::Polisher::polish] generating consensus [================> ] 838.152849 s [racon::Polisher::polish] generating consensus [=================> ] 905.563469 s [racon::Polisher::polish] generating consensus [==================> ] 957.571464 s [racon::Polisher::polish] generating consensus [===================>] 991.101923 s [racon::Polisher::polish] generating consensus [====================] 1011.566734 s [racon::Polisher::] total = 1084.510749 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (1084607 ms) [----------] 10 tests from RaconPolishingTest (3641855 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (3641912 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-arm-linux-gnueabihf && make -j5 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: debian/racon/usr/bin/racon contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_armhf.deb'. dpkg-deb: building package 'racon' in '../racon_1.5.0-3_armhf.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_armhf.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2761 and its subdirectories I: Current time: Wed May 8 05:27:09 -12 2024 I: pbuilder-time-stamp: 1715189229 Wed May 8 17:27:23 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt32a-armhf-rb.debian.net. Wed May 8 17:27:23 UTC 2024 I: Preparing to do remote build '2' on virt32a-armhf-rb.debian.net. Wed May 8 18:23:55 UTC 2024 I: Deleting $TMPDIR on virt32a-armhf-rb.debian.net. Wed May 8 18:23:58 UTC 2024 I: racon_1.5.0-3_armhf.changes: Format: 1.8 Date: Thu, 29 Sep 2022 14:39:55 +0200 Source: racon Binary: racon racon-dbgsym Architecture: armhf Version: 1.5.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: racon - consensus module for raw de novo DNA assembly of long uncorrected Changes: racon (1.5.0-3) unstable; urgency=medium . * Standards-Version: 4.6.1 (routine-update) * Drop patch making racon compatible to old libthread_pool Checksums-Sha1: 0ae8ae9c82e9ffcef1239e221262b69c773f2c1d 983408 racon-dbgsym_1.5.0-3_armhf.deb c3e3ca24e46813b19674400e09546877ff84b433 6145 racon_1.5.0-3_armhf.buildinfo 5e0f7b8834349651ef19fbb71e42b28000a9e4c7 3106208 racon_1.5.0-3_armhf.deb Checksums-Sha256: bcd289df82609c7790f8857504b0ef1386d2f1ac244f1e9c34e6e14bdcdcf45c 983408 racon-dbgsym_1.5.0-3_armhf.deb d033d1d5fb9f65cf323ed6f4eb7c30e97cf0b85ba7919faafc6f9a76ff899547 6145 racon_1.5.0-3_armhf.buildinfo 1a584de6d9e24c50570ed6813ede9ed97084fe8aedb1500968c255d0d11839b5 3106208 racon_1.5.0-3_armhf.deb Files: cc10e4e8042f9e35a47fb837b005f163 983408 debug optional racon-dbgsym_1.5.0-3_armhf.deb 9b16979cd439f5ebbcd818a1804418d2 6145 science optional racon_1.5.0-3_armhf.buildinfo 47f8f347dac2c152023dd0c88ec20edc 3106208 science optional racon_1.5.0-3_armhf.deb Wed May 8 18:23:59 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_18-3713.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.4afJXjzD/racon_1.5.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.4afJXjzD/racon_1.5.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.4afJXjzD/racon_1.5.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.4afJXjzD/b1/racon_1.5.0-3_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.4afJXjzD/b2/racon_1.5.0-3_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.399s) 0.399s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.057s) 0.057s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 731ms CPU time consumed: 730ms Wed May 8 18:24:00 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Wed May 8 18:24:00 UTC 2024 I: racon from trixie built successfully and reproducibly on armhf. Wed May 8 18:24:01 UTC 2024 I: Submitting .buildinfo files to external archives: Wed May 8 18:24:01 UTC 2024 I: Submitting 8.0K b1/racon_1.5.0-3_armhf.buildinfo.asc Wed May 8 18:24:03 UTC 2024 I: Submitting 8.0K b2/racon_1.5.0-3_armhf.buildinfo.asc Wed May 8 18:24:05 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed May 8 18:24:05 UTC 2024 I: Done submitting .buildinfo files. Wed May 8 18:24:05 UTC 2024 I: Removing signed racon_1.5.0-3_armhf.buildinfo.asc files: removed './b1/racon_1.5.0-3_armhf.buildinfo.asc' removed './b2/racon_1.5.0-3_armhf.buildinfo.asc'