Thu Jun 6 23:02:24 UTC 2024 I: starting to build python-sqt/trixie/armhf on jenkins on '2024-06-06 23:02' Thu Jun 6 23:02:24 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_32/18213/console.log Thu Jun 6 23:02:24 UTC 2024 I: Downloading source for trixie/python-sqt=0.8.0-8 --2024-06-06 23:02:24-- http://deb.debian.org/debian/pool/main/p/python-sqt/python-sqt_0.8.0-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2200 (2.1K) [text/prs.lines.tag] Saving to: ‘python-sqt_0.8.0-8.dsc’ 0K .. 100% 254M=0s 2024-06-06 23:02:24 (254 MB/s) - ‘python-sqt_0.8.0-8.dsc’ saved [2200/2200] Thu Jun 6 23:02:24 UTC 2024 I: python-sqt_0.8.0-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-sqt Binary: python3-sqt Architecture: any Version: 0.8.0-8 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://bitbucket.org/marcelm/sqt Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/python-sqt Vcs-Git: https://salsa.debian.org/med-team/python-sqt.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, cython3, python3-cutadapt , python3-pysam , python3-pytest , python3-seaborn , python3-xopen Package-List: python3-sqt deb python optional arch=any Checksums-Sha1: 6b7dee79483ed5ff1168329817a4999da6007033 116482 python-sqt_0.8.0.orig.tar.gz 05f456d5047bc1c4c62de6e58037df9cd209b1de 6984 python-sqt_0.8.0-8.debian.tar.xz Checksums-Sha256: 86a938fcf41d64a175c234b2156b674d5f4d615fa869341d985c0e05480e5f22 116482 python-sqt_0.8.0.orig.tar.gz 1f7426e8a6836dbcc4d98ec653707778b07ea7a8e1ccb6417ca245bafcb0241d 6984 python-sqt_0.8.0-8.debian.tar.xz Files: ae2f5949c3841194ad87c4fb6036a8db 116482 python-sqt_0.8.0.orig.tar.gz 96982dea78fdd92da470b6e3a887dd71 6984 python-sqt_0.8.0-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmVwfKwRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFLLhAAmDIvcsXXsBuklZL13bJUZQonjimgUvYU hDSROANtkOqGMK2h/ndD1pnyAnufHLE9x4fmPkAyQKCXeSpbDzLkcJbQQWqs8UNx Dvlo82XP/QT+lQ91nre8IPw5Kcw02d3ZEEM/LMWlO2blOYCOm3cvDJLW0X/CPpAg 9KSPjy7bnrB5k9uqMU5BVunaooSZQl8gfNwTnNa0AC01ypC7Z3el96obZuND2bjm unNTb0CMc2B19jpnI7l4iUbC9K0HndYaHJC9QY6jK7z7q80WRD0INaOamyZUm4NR c9V1Z7XQb2jPPfs/QRo3s23unLS4mmh3nl2FjOIaQmh6+EpNZ7zgcb1ZFcCriQrz V9WFwyTucB4ey0Hx4R3I0qiIQ1Q7yOaRNYruAupZy6vvhJ1hUpNT4DqZa0jIBvua kjr4CG3sgqC7KQxqOODJm/no5x2YR+arlYLBVbIFjkyKxCi528iKJDSJeqw+X09L f14YUhTwKlfAxQBxc78YVPFnMH6H1UbNialIB3OgYtQGYU/ppEZBVW21RXbYJZgT Z8A7UIZX7JyxGM2e7q1FWac/3Jqrk3DqqSHJPcYBswhVOhbH9DLf8J6932qc+dxv ze0IJ4xLY8KnRJwQL8o+rx4j9sV+AhIdWwREaKjm9g/Y2hAKVqnlTZ/ifYF62+hZ I/X5sc2IgBY= =p736 -----END PGP SIGNATURE----- Thu Jun 6 23:02:24 UTC 2024 I: Checking whether the package is not for us Thu Jun 6 23:02:24 UTC 2024 I: Starting 1st build on remote node virt64c-armhf-rb.debian.net. Thu Jun 6 23:02:24 UTC 2024 I: Preparing to do remote build '1' on virt64c-armhf-rb.debian.net. Thu Jun 6 23:11:53 UTC 2024 I: Deleting $TMPDIR on virt64c-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jun 6 11:02:32 -12 2024 I: pbuilder-time-stamp: 1717714952 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-sqt_0.8.0-8.dsc] I: copying [./python-sqt_0.8.0.orig.tar.gz] I: copying [./python-sqt_0.8.0-8.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Dec 6 13:52:44 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-sqt_0.8.0-8.dsc: no acceptable signature found dpkg-source: info: extracting python-sqt in python-sqt-0.8.0 dpkg-source: info: unpacking python-sqt_0.8.0.orig.tar.gz dpkg-source: info: unpacking python-sqt_0.8.0-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fixme_ignore_failing_test.patch dpkg-source: info: applying fixme_ignore_failing_test2.patch dpkg-source: info: applying pytest.patch dpkg-source: info: applying python-3.12.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/27326/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='16c5e70e45184725a7358ac98273e2ed' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='27326' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.W5Ce2GbQ/pbuilderrc_Cug6 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.W5Ce2GbQ/b1 --logfile b1/build.log python-sqt_0.8.0-8.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64c 6.1.0-21-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 4 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/27326/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, cython3, python3-cutadapt, python3-pysam, python3-pytest, python3-seaborn, python3-xopen dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19443 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-cutadapt; however: Package python3-cutadapt is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-seaborn; however: Package python3-seaborn is not installed. pbuilder-satisfydepends-dummy depends on python3-xopen; however: Package python3-xopen is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libopenjp2-7{a} libpipeline1{a} libpng16-16t64{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} pigz{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-brotli{a} python3-contourpy{a} python3-cutadapt{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-dnaio{a} python3-fonttools{a} python3-fs{a} python3-iniconfig{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyparsing{a} python3-pysam{a} python3-pytest{a} python3-scipy{a} python3-seaborn{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-tz{a} python3-ufolib2{a} python3-xopen{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-patsy python3-pygments python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 169 newly installed, 0 to remove and 0 not upgraded. Need to get 128 MB of archives. After unpacking 530 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf pigz armhf 2.8-1 [55.6 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libpython3.11-minimal armhf 3.11.9-1 [805 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf python3.11-minimal armhf 3.11.9-1 [1600 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.11.8-1 [26.3 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf tzdata all 2024a-4 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-4 [69.3 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libreadline8t64 armhf 8.2-4 [145 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libpython3.11-stdlib armhf 3.11.9-1 [1704 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf python3.11 armhf 3.11.9-1 [602 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.11.8-1 [9332 B] Get: 14 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.11.8-1 [27.4 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf libpython3.12-minimal armhf 3.12.3-1 [795 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf python3.12-minimal armhf 3.12.3-1 [1783 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-4 [1090 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.1-8 [87.7 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.1-1 [1375 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libtcl8.6 armhf 8.6.14+dfsg-1 [928 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libpng16-16t64 armhf 1.6.43-5 [262 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf libfreetype6 armhf 2.13.2+dfsg-1+b4 [372 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf fontconfig-config armhf 2.15.0-1.1 [317 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libfontconfig1 armhf 2.15.0-1.1 [370 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libxau6 armhf 1:1.0.9-1+b1 [17.4 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf libbsd0 armhf 0.12.2-1 [127 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libxdmcp6 armhf 1:1.1.2-3+b1 [23.0 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libxcb1 armhf 1.17.0-2 [140 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf libx11-data all 2:1.8.7-1 [328 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf libx11-6 armhf 2:1.8.7-1+b1 [739 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libxrender1 armhf 1:0.9.10-1.1+b1 [24.9 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf libxft2 armhf 2.3.6-1+b1 [46.4 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf x11-common all 1:7.7+23 [252 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf libxss1 armhf 1:1.2.3-1+b1 [16.4 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf libtk8.6 armhf 8.6.14-1 [693 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-7 [481 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf blt armhf 2.5.3+dfsg-7 [6024 B] Get: 54 http://deb.debian.org/debian trixie/main armhf cython3 armhf 3.0.10+dfsg-5 [3208 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 61 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b3 [598 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf python3-pkg-resources all 68.1.2-2 [241 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf python3-lib2to3 all 3.12.3-3.1 [77.7 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf python3-distutils all 3.12.3-3.1 [131 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf python3-setuptools all 68.1.2-2 [468 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf dh-python all 6.20240422 [107 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf fonts-lyx all 2.4.0-1 [189 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf libblas3 armhf 3.12.0-3 [108 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.1-1 [22.1 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.20.1-6+b1 [30.6 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.20.1-6+b1 [75.5 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 80 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.20.1-6+b1 [290 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.20.1-6+b1 [112 kB] Get: 82 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-6 [18.0 kB] Get: 83 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-6 [50.1 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.17+dfsg-1 [161 kB] Get: 85 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.61.0-1+b1 [64.1 kB] Get: 86 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 87 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [53.2 kB] Get: 88 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.0-5 [199 kB] Get: 89 http://deb.debian.org/debian trixie/main armhf libcurl3t64-gnutls armhf 8.8.0-1 [389 kB] Get: 90 http://deb.debian.org/debian trixie/main armhf libdeflate0 armhf 1.20-1 [35.9 kB] Get: 91 http://deb.debian.org/debian trixie/main armhf libexpat1-dev armhf 2.6.2-1 [140 kB] Get: 92 http://deb.debian.org/debian trixie/main armhf libfribidi0 armhf 1.0.13-3+b1 [69.4 kB] Get: 93 http://deb.debian.org/debian trixie/main armhf libgfortran5 armhf 14-20240330-1 [264 kB] Get: 94 http://deb.debian.org/debian trixie/main armhf libglib2.0-0t64 armhf 2.80.2-2 [1314 kB] Get: 95 http://deb.debian.org/debian trixie/main armhf libgraphite2-3 armhf 1.3.14-2 [63.2 kB] Get: 96 http://deb.debian.org/debian trixie/main armhf libharfbuzz0b armhf 8.3.0-2+b1 [2156 kB] Get: 97 http://deb.debian.org/debian trixie/main armhf libhtscodecs2 armhf 1.6.0-1+b1 [61.3 kB] Get: 98 http://deb.debian.org/debian trixie/main armhf libhts3t64 armhf 1.20+ds-1 [399 kB] Get: 99 http://deb.debian.org/debian trixie/main armhf libimagequant0 armhf 2.18.0-1+b1 [30.7 kB] Get: 100 http://deb.debian.org/debian trixie/main armhf libjbig0 armhf 2.1-6.1+b1 [27.3 kB] Get: 101 http://deb.debian.org/debian trixie/main armhf libjpeg62-turbo armhf 1:2.1.5-3 [143 kB] Get: 102 http://deb.debian.org/debian trixie/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 103 http://deb.debian.org/debian trixie/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 104 http://deb.debian.org/debian trixie/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 105 http://deb.debian.org/debian trixie/main armhf libjs-sphinxdoc all 7.2.6-8 [150 kB] Get: 106 http://deb.debian.org/debian trixie/main armhf liblapack3 armhf 3.12.0-3 [1803 kB] Get: 107 http://deb.debian.org/debian trixie/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1+b1 [25.5 kB] Get: 108 http://deb.debian.org/debian trixie/main armhf liblcms2-2 armhf 2.14-2+b1 [126 kB] Get: 109 http://deb.debian.org/debian trixie/main armhf liblerc4 armhf 4.0.0+ds-4+b1 [137 kB] Get: 110 http://deb.debian.org/debian trixie/main armhf libopenjp2-7 armhf 2.5.0-2+b3 [170 kB] Get: 111 http://deb.debian.org/debian trixie/main armhf libpython3.11t64 armhf 3.11.9-1 [1674 kB] Get: 112 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1 [904 kB] Get: 113 http://deb.debian.org/debian trixie/main armhf libpython3.11-dev armhf 3.11.9-1 [3108 kB] Get: 114 http://deb.debian.org/debian trixie/main armhf libpython3-dev armhf 3.11.8-1 [9560 B] Get: 115 http://deb.debian.org/debian trixie/main armhf libpython3.12-stdlib armhf 3.12.3-1 [1808 kB] Get: 116 http://deb.debian.org/debian trixie/main armhf libpython3.12t64 armhf 3.12.3-1 [1820 kB] Get: 117 http://deb.debian.org/debian trixie/main armhf libpython3.12-dev armhf 3.12.3-1 [3754 kB] Get: 118 http://deb.debian.org/debian trixie/main armhf libpython3-all-dev armhf 3.11.8-1 [1072 B] Get: 119 http://deb.debian.org/debian trixie/main armhf libqhull-r8.0 armhf 2020.2-6+b1 [219 kB] Get: 120 http://deb.debian.org/debian trixie/main armhf libraqm0 armhf 0.10.1-1+b1 [11.8 kB] Get: 121 http://deb.debian.org/debian trixie/main armhf libsharpyuv0 armhf 1.4.0-0.1 [111 kB] Get: 122 http://deb.debian.org/debian trixie/main armhf libwebp7 armhf 1.4.0-0.1 [265 kB] Get: 123 http://deb.debian.org/debian trixie/main armhf libtiff6 armhf 4.5.1+git230720-4 [301 kB] Get: 124 http://deb.debian.org/debian trixie/main armhf libwebpdemux2 armhf 1.4.0-0.1 [110 kB] Get: 125 http://deb.debian.org/debian trixie/main armhf libwebpmux3 armhf 1.4.0-0.1 [120 kB] Get: 126 http://deb.debian.org/debian trixie/main armhf libxslt1.1 armhf 1.1.35-1+b1 [212 kB] Get: 127 http://deb.debian.org/debian trixie/main armhf python-matplotlib-data all 3.6.3-2 [2744 kB] Get: 128 http://deb.debian.org/debian trixie/main armhf python3.12 armhf 3.12.3-1 [659 kB] Get: 129 http://deb.debian.org/debian trixie/main armhf python3-all armhf 3.11.8-1 [1056 B] Get: 130 http://deb.debian.org/debian trixie/main armhf python3.11-dev armhf 3.11.9-1 [501 kB] Get: 131 http://deb.debian.org/debian trixie/main armhf python3-dev armhf 3.11.8-1 [26.1 kB] Get: 132 http://deb.debian.org/debian trixie/main armhf python3.12-dev armhf 3.12.3-1 [499 kB] Get: 133 http://deb.debian.org/debian trixie/main armhf python3-all-dev armhf 3.11.8-1 [1072 B] Get: 134 http://deb.debian.org/debian trixie/main armhf python3-appdirs all 1.4.4-4 [12.5 kB] Get: 135 http://deb.debian.org/debian trixie/main armhf python3-attr all 23.2.0-2 [65.5 kB] Get: 136 http://deb.debian.org/debian trixie/main armhf python3-brotli armhf 1.1.0-2+b3 [304 kB] Get: 137 http://deb.debian.org/debian trixie/main armhf python3-numpy armhf 1:1.26.4+ds-10 [4132 kB] Get: 138 http://deb.debian.org/debian trixie/main armhf python3-contourpy armhf 1.0.7-3 [231 kB] Get: 139 http://deb.debian.org/debian trixie/main armhf python3-xopen all 1.7.0-2 [16.9 kB] Get: 140 http://deb.debian.org/debian trixie/main armhf python3-dnaio armhf 1.2.0-2 [99.6 kB] Get: 141 http://deb.debian.org/debian trixie/main armhf python3-cutadapt armhf 4.7-2 [241 kB] Get: 142 http://deb.debian.org/debian trixie/main armhf python3-cycler all 0.12.1-1 [9496 B] Get: 143 http://deb.debian.org/debian trixie/main armhf python3-six all 1.16.0-6 [16.3 kB] Get: 144 http://deb.debian.org/debian trixie/main armhf python3-dateutil all 2.9.0-2 [79.4 kB] Get: 145 http://deb.debian.org/debian trixie/main armhf python3-decorator all 5.1.1-5 [15.1 kB] Get: 146 http://deb.debian.org/debian trixie/main armhf python3-scipy armhf 1.11.4-10 [16.9 MB] Get: 147 http://deb.debian.org/debian trixie/main armhf python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB] Get: 148 http://deb.debian.org/debian trixie/main armhf python3-mpmath all 1.3.0-1 [419 kB] Get: 149 http://deb.debian.org/debian trixie/main armhf python3-sympy all 1.12-8 [3869 kB] Get: 150 http://deb.debian.org/debian trixie/main armhf python3-tz all 2024.1-2 [30.9 kB] Get: 151 http://deb.debian.org/debian trixie/main armhf python3-fs all 2.4.16-4 [95.4 kB] Get: 152 http://deb.debian.org/debian trixie/main armhf python3-lxml armhf 5.1.0-1 [1878 kB] Get: 153 http://deb.debian.org/debian trixie/main armhf python3-lz4 armhf 4.0.2+dfsg-1+b3 [24.4 kB] Get: 154 http://deb.debian.org/debian trixie/main armhf unicode-data all 15.1.0-1 [8547 kB] Get: 155 http://deb.debian.org/debian trixie/main armhf python3-fonttools armhf 4.46.0-1 [1536 kB] Get: 156 http://deb.debian.org/debian trixie/main armhf python3-iniconfig all 1.1.1-2 [6396 B] Get: 157 http://deb.debian.org/debian trixie/main armhf python3-kiwisolver armhf 1.4.5-1 [69.0 kB] Get: 158 http://deb.debian.org/debian trixie/main armhf python3-pil armhf 10.3.0-2 [521 kB] Get: 159 http://deb.debian.org/debian trixie/main armhf python3-tk armhf 3.12.3-3.1 [109 kB] Get: 160 http://deb.debian.org/debian trixie/main armhf python3-pil.imagetk armhf 10.3.0-2 [79.1 kB] Get: 161 http://deb.debian.org/debian trixie/main armhf python3-pyparsing all 3.1.2-1 [146 kB] Get: 162 http://deb.debian.org/debian trixie/main armhf python3-packaging all 24.0-1 [45.5 kB] Get: 163 http://deb.debian.org/debian trixie/main armhf python3-matplotlib armhf 3.6.3-2 [7907 kB] Get: 164 http://deb.debian.org/debian trixie/main armhf python3-pandas-lib armhf 2.1.4+dfsg-8 [7001 kB] Get: 165 http://deb.debian.org/debian trixie/main armhf python3-pandas all 2.1.4+dfsg-8 [3015 kB] Get: 166 http://deb.debian.org/debian trixie/main armhf python3-pluggy all 1.5.0-1 [26.9 kB] Get: 167 http://deb.debian.org/debian trixie/main armhf python3-pysam armhf 0.22.1+ds-2 [4120 kB] Get: 168 http://deb.debian.org/debian trixie/main armhf python3-pytest all 8.1.2-1 [246 kB] Get: 169 http://deb.debian.org/debian trixie/main armhf python3-seaborn all 0.13.2-3 [215 kB] Fetched 128 MB in 5s (25.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package pigz. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19443 files and directories currently installed.) Preparing to unpack .../archives/pigz_2.8-1_armhf.deb ... Unpacking pigz (2.8-1) ... Selecting previously unselected package libpython3.11-minimal:armhf. Preparing to unpack .../libpython3.11-minimal_3.11.9-1_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.9-1) ... Selecting previously unselected package libexpat1:armhf. 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Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:armhf. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_armhf.deb ... Unpacking libpython3.11-stdlib:armhf (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_armhf.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20760 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_armhf.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:armhf. Preparing to unpack .../001-libpython3.12-minimal_3.12.3-1_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../002-python3.12-minimal_3.12.3-1_armhf.deb ... Unpacking python3.12-minimal (3.12.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3_armhf.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.21-14+b1_armhf.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../008-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-4_armhf.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.1-8_armhf.deb ... Unpacking bsdextrautils (2.40.1-8) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../011-libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.12.1-1_armhf.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. 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Unpacking libbrotli1:armhf (1.1.0-2+b3) ... Selecting previously unselected package libpng16-16t64:armhf. Preparing to unpack .../020-libpng16-16t64_1.6.43-5_armhf.deb ... Unpacking libpng16-16t64:armhf (1.6.43-5) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../021-libfreetype6_2.13.2+dfsg-1+b4_armhf.deb ... Unpacking libfreetype6:armhf (2.13.2+dfsg-1+b4) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../022-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../023-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../024-fontconfig-config_2.15.0-1.1_armhf.deb ... Unpacking fontconfig-config (2.15.0-1.1) ... Selecting previously unselected package libfontconfig1:armhf. 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Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Jun 6 23:04:52 UTC 2024. Universal Time is now: Thu Jun 6 23:04:52 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:armhf (2.80.2-2) ... No schema files found: doing nothing. Setting up libblas3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libexpat1-dev:armhf (2.6.2-1) ... Setting up libjpeg62-turbo:armhf (1:2.1.5-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libfribidi0:armhf (1.0.13-3+b1) ... Setting up libimagequant0:armhf (2.18.0-1+b1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:armhf (1.6.43-5) ... Setting up libtcl8.6:armhf (8.6.14+dfsg-1) ... Setting up autopoint (0.21-14) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:armhf (1.20.1-6+b1) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-6) ... Setting up libgfortran5:armhf (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:armhf (1.4.0-0.1) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.22) ... Setting up pigz (2.8-1) ... Setting up libtiff6:armhf (4.5.1+git230720-4) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up libopenjp2-7:armhf (2.5.0-2+b3) ... Setting up netbase (6.4) ... Setting up libkrb5-3:armhf (1.20.1-6+b1) ... Setting up libssh2-1t64:armhf (1.11.0-5) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.6.3-2) ... Setting up libwebpmux3:armhf (1.4.0-0.1) ... Setting up libbsd0:armhf (0.12.2-1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b3) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up python3.12-minimal (3.12.3-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3+b1) ... Setting up liblapack3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.17.0-2) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libwebpdemux2:armhf (1.4.0-0.1) ... Setting up libldap-2.5-0:armhf (2.5.17+dfsg-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:armhf (2.13.2+dfsg-1+b4) ... Setting up libgssapi-krb5-2:armhf (1.20.1-6+b1) ... Setting up libjs-sphinxdoc (7.2.6-8) ... Setting up libreadline8t64:armhf (8.2-4) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-4) ... Setting up libxslt1.1:armhf (1.1.35-1+b1) ... Setting up libx11-6:armhf (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:armhf (8.3.0-2+b1) ... Setting up libfontconfig1:armhf (2.15.0-1.1) ... Setting up liblbfgsb0:armhf (3.0+dfsg.4-1+b1) ... Setting up libpython3.12-stdlib:armhf (3.12.3-1) ... Setting up libxrender1:armhf (1:0.9.10-1.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:armhf (3.11.9-1) ... Setting up python3.12 (3.12.3-1) ... Setting up libpython3.11t64:armhf (3.11.9-1) ... Setting up libcurl3t64-gnutls:armhf (8.8.0-1) ... Setting up libxext6:armhf (2:1.3.4-1+b1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3.12t64:armhf (3.12.3-1) ... Setting up libpython3.11-dev:armhf (3.11.9-1) ... Setting up libraqm0:armhf (0.10.1-1+b1) ... Setting up libhts3t64:armhf (1.20+ds-1) ... Setting up libxss1:armhf (1:1.2.3-1+b1) ... Setting up libpython3-stdlib:armhf (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up libxft2:armhf (2.3.6-1+b1) ... Setting up libpython3-dev:armhf (3.11.8-1) ... Setting up python3.11-dev (3.11.9-1) ... Setting up libtk8.6:armhf (8.6.14-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up libpython3.12-dev:armhf (3.12.3-1) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-pil:armhf (10.3.0-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up libpython3-all-dev:armhf (3.11.8-1) ... Setting up python3-brotli (1.1.0-2+b3) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.5-1) ... Setting up python3.12-dev (3.12.3-1) ... Setting up cython3 (3.0.10+dfsg-5) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-lxml:armhf (5.1.0-1) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-lib2to3 (3.12.3-3.1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-3.1) ... python3.12: can't get files for byte-compilation Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.12-8) ... Setting up python3-attr (23.2.0-2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... Setting up python3-pysam (0.22.1+ds-2) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-lz4 (4.0.2+dfsg-1+b3) ... Setting up python3-pytest (8.1.2-1) ... Setting up blt (2.5.3+dfsg-7) ... Setting up python3-all (3.11.8-1) ... Setting up python3-tk:armhf (3.12.3-3.1) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-xopen (1.7.0-2) ... Setting up python3-pil.imagetk:armhf (10.3.0-2) ... Setting up python3-dev (3.11.8-1) ... Setting up python3-numpy (1:1.26.4+ds-10) ... Setting up python3-contourpy (1.0.7-3) ... Setting up python3-dnaio (1.2.0-2) ... Setting up dh-python (6.20240422) ... Setting up python3-all-dev (3.11.8-1) ... Setting up python3-scipy (1.11.4-10) ... Setting up python3-pandas-lib:armhf (2.1.4+dfsg-8) ... Setting up python3-pandas (2.1.4+dfsg-8) ... Setting up python3-cutadapt (4.7-2) ... Setting up python3-fonttools (4.46.0-1) ... Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... Setting up python3-matplotlib (3.6.3-2) ... Setting up python3-seaborn (0.13.2-3) ... Processing triggers for libc-bin (2.38-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-sqt-0.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-sqt_0.8.0-8_source.changes dpkg-buildpackage: info: source package python-sqt dpkg-buildpackage: info: source version 0.8.0-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Lance Lin dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf dpkg-source: info: using options from python-sqt-0.8.0/debian/source/options: --extend-diff-ignore=sqt/_version.py debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p "3.12 3.11" I: pybuild base:311: python3.12 setup.py clean /build/reproducible-path/python-sqt-0.8.0/versioneer.py:485: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY['git'] = ''' running clean removing '/build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-sqt.substvars debian/files rm -fr -- debian/python3-sqt/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p "3.12 3.11" I: pybuild base:311: python3.12 setup.py config /build/reproducible-path/python-sqt-0.8.0/versioneer.py:485: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY['git'] = ''' running config I: pybuild base:311: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p "3.12 3.11" I: pybuild base:311: /usr/bin/python3.12 setup.py build running build running build_py creating /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/qualtrim.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/_codons.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/_version.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/compat.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/align.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/intervaltree.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/region.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/dna.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/__main__.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/math.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/cigar.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/args.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/ansicolor.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/reads.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/colorspace.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/utils.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt creating /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io copying sqt/io/gtf.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io copying sqt/io/sff.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io copying sqt/io/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io copying sqt/io/fasta.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io copying sqt/io/bam.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io creating /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/samfixn.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/randomseq.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/cutvect.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/readlenhisto.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/bamstats.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/qualityguess.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/fastxmod.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/histogram.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/samsetop.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/fastastats.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/qgramfreq.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/align.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/fastagrep.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/compare_sequences.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/checkfastqpe.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/chars.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/bam2fastq.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/bameof.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/readcov.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/simreads.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/coverage.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/translate.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/mutate.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/fastaextract.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/addadapt.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/checkvcfref.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/fixbam64.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands UPDATING /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_version.py set /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_version.py to '0.8.0' running build_ext /build/reproducible-path/python-sqt-0.8.0/setup.py:48: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION): /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-sqt-0.8.0/sqt/_helpers.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling sqt/_helpers.pyx because it changed. [1/1] Cythonizing sqt/_helpers.pyx building 'sqt._helpers' extension creating build creating build/temp.linux-armv7l-cpython-312 creating build/temp.linux-armv7l-cpython-312/sqt arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-sqt-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c sqt/_helpers.c -o build/temp.linux-armv7l-cpython-312/sqt/_helpers.o sqt/_helpers.c: In function ‘__pyx_pf_3sqt_8_helpers_12nt_to_aa’: sqt/_helpers.c:22537:51: warning: array subscript has type ‘char’ [-Wchar-subscripts] 22537 | __pyx_v_nt0 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[__pyx_v_i])]); | ~~~~~~~~~~^~~~~~~~~~~~ sqt/_helpers.c:22546:51: warning: array subscript has type ‘char’ [-Wchar-subscripts] 22546 | __pyx_v_nt1 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[(__pyx_v_i + 1)])]); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ sqt/_helpers.c:22555:51: warning: array subscript has type ‘char’ [-Wchar-subscripts] 22555 | __pyx_v_nt2 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[(__pyx_v_i + 2)])]); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-sqt-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/sqt/_helpers.o -L/usr/lib/arm-linux-gnueabihf -o /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_helpers.cpython-312-arm-linux-gnueabihf.so I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt copying sqt/qualtrim.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt copying sqt/_codons.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt copying sqt/_version.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt copying sqt/compat.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt copying sqt/align.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt copying sqt/intervaltree.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt copying sqt/region.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt copying sqt/dna.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt copying sqt/__main__.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt copying sqt/math.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt copying sqt/cigar.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt copying sqt/args.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt copying sqt/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt copying sqt/ansicolor.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt copying sqt/reads.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt copying sqt/colorspace.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt copying sqt/utils.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt creating /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/io copying sqt/io/gtf.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/io copying sqt/io/sff.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/io copying sqt/io/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/io copying sqt/io/fasta.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/io copying sqt/io/bam.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/io creating /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/samfixn.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/randomseq.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/cutvect.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/readlenhisto.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/bamstats.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/qualityguess.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/fastxmod.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/histogram.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/samsetop.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/fastastats.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/qgramfreq.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/align.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/fastagrep.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/compare_sequences.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/checkfastqpe.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/chars.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/bam2fastq.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/bameof.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/readcov.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/simreads.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/coverage.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/translate.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/mutate.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/fastaextract.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/addadapt.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/checkvcfref.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands copying sqt/commands/fixbam64.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands UPDATING /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/_version.py set /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/_version.py to '0.8.0' running build_ext /build/reproducible-path/python-sqt-0.8.0/setup.py:48: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION): building 'sqt._helpers' extension creating build/temp.linux-armv7l-cpython-311 creating build/temp.linux-armv7l-cpython-311/sqt arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-sqt-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c sqt/_helpers.c -o build/temp.linux-armv7l-cpython-311/sqt/_helpers.o sqt/_helpers.c: In function ‘__pyx_pf_3sqt_8_helpers_12nt_to_aa’: sqt/_helpers.c:22537:51: warning: array subscript has type ‘char’ [-Wchar-subscripts] 22537 | __pyx_v_nt0 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[__pyx_v_i])]); | ~~~~~~~~~~^~~~~~~~~~~~ sqt/_helpers.c:22546:51: warning: array subscript has type ‘char’ [-Wchar-subscripts] 22546 | __pyx_v_nt1 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[(__pyx_v_i + 1)])]); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ sqt/_helpers.c:22555:51: warning: array subscript has type ‘char’ [-Wchar-subscripts] 22555 | __pyx_v_nt2 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[(__pyx_v_i + 2)])]); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-sqt-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/sqt/_helpers.o -L/usr/lib/arm-linux-gnueabihf -o /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/_helpers.cpython-311-arm-linux-gnueabihf.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-sqt-0.8.0' LC_ALL=C.UTF-8 dh_auto_test pybuild --test --test-pytest -i python{version} -p "3.12 3.11" I: pybuild base:311: cd /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.3, pytest-8.1.2, pluggy-1.5.0 rootdir: /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build configfile: pytest.ini collected 45 items tests/testalign.py ....... [ 15%] tests/testcigar.py ........... [ 40%] tests/testcolorspace.py .. [ 44%] tests/testdna.py ...... [ 57%] tests/testfasta.py ............. [ 86%] tests/testindexedfasta.py ... [ 93%] tests/testintervaltree.py . [ 95%] tests/testmedian.py . [ 97%] tests/testregion.py . [100%] ============================= 45 passed in 26.38s ============================== I: pybuild base:311: cd /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build; python3.11 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-8.1.2, pluggy-1.5.0 rootdir: /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build configfile: pytest.ini collected 45 items tests/testalign.py ....... [ 15%] tests/testcigar.py ........... [ 40%] tests/testcolorspace.py .. [ 44%] tests/testdna.py ...... [ 57%] tests/testfasta.py ............. [ 86%] tests/testindexedfasta.py ... [ 93%] tests/testintervaltree.py . [ 95%] tests/testmedian.py . [ 97%] tests/testregion.py . [100%] ============================= 45 passed in 30.69s ============================== rm -fr -- /tmp/dh-xdg-rundir-MEJb7DYb make[1]: Leaving directory '/build/reproducible-path/python-sqt-0.8.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-sqt.substvars rm -fr -- debian/.debhelper/generated/python3-sqt/ debian/python3-sqt/ debian/tmp/ dh_auto_install --destdir=debian/python3-sqt/ -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt pybuild --install -i python{version} -p "3.12 3.11" --dest-dir /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py UPDATING /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_version.py set /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_version.py to '0.8.0' running build_ext /build/reproducible-path/python-sqt-0.8.0/setup.py:48: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION): running install_lib creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12 creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/cigar.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/colorspace.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/align.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/compat.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/dna.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/args.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/intervaltree.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/region.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/_version.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/_codons.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/math.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/qualtrim.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_helpers.cpython-312-arm-linux-gnueabihf.so -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/gtf.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/__pycache__/fasta.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/__pycache__/gtf.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/sff.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/fasta.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/bam.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_codons.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_version.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/compat.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/align.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/samfixn.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/randomseq.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/cutvect.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/readlenhisto.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/bamstats.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/qualityguess.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/fastxmod.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/histogram.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/samsetop.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/fastastats.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/qgramfreq.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/align.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/fastagrep.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/compare_sequences.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/checkfastqpe.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/chars.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/bam2fastq.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/bameof.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/readcov.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/simreads.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/coverage.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/translate.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/mutate.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/fastaextract.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/addadapt.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/checkvcfref.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/fixbam64.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/intervaltree.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/region.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/dna.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__main__.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/math.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/cigar.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/args.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/ansicolor.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/reads.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/colorspace.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/utils.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/.pytest_cache/README.md -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache/v creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/qualtrim.py to qualtrim.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/gtf.py to gtf.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/sff.py to sff.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/fasta.py to fasta.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/bam.py to bam.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/_codons.py to _codons.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/_version.py to _version.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/compat.py to compat.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/align.py to align.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/samfixn.py to samfixn.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/randomseq.py to randomseq.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/cutvect.py to cutvect.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/readlenhisto.py to readlenhisto.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/bamstats.py to bamstats.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/qualityguess.py to qualityguess.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/fastxmod.py to fastxmod.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/histogram.py to histogram.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/samsetop.py to samsetop.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/fastastats.py to fastastats.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/qgramfreq.py to qgramfreq.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/align.py to align.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/fastagrep.py to fastagrep.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/compare_sequences.py to compare_sequences.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/checkfastqpe.py to checkfastqpe.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/chars.py to chars.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/bam2fastq.py to bam2fastq.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/bameof.py to bameof.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/readcov.py to readcov.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/simreads.py to simreads.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/coverage.py to coverage.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/translate.py to translate.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/mutate.py to mutate.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/fastaextract.py to fastaextract.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/addadapt.py to addadapt.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/checkvcfref.py to checkvcfref.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/fixbam64.py to fixbam64.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/intervaltree.py to intervaltree.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/region.py to region.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/dna.py to dna.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__main__.py to __main__.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/math.py to math.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/cigar.py to cigar.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/args.py to args.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/ansicolor.py to ansicolor.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/reads.py to reads.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/colorspace.py to colorspace.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/utils.py to utils.cpython-312.pyc running install_egg_info running egg_info creating sqt.egg-info writing sqt.egg-info/PKG-INFO writing dependency_links to sqt.egg-info/dependency_links.txt writing entry points to sqt.egg-info/entry_points.txt writing requirements to sqt.egg-info/requires.txt writing top-level names to sqt.egg-info/top_level.txt writing manifest file 'sqt.egg-info/SOURCES.txt' reading manifest file 'sqt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'sqt.egg-info/SOURCES.txt' Copying sqt.egg-info to /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt-0.8.0.egg-info Skipping SOURCES.txt running install_scripts Installing sqt script to /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/bin I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py UPDATING /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/_version.py set /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/_version.py to '0.8.0' running build_ext /build/reproducible-path/python-sqt-0.8.0/setup.py:48: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION): running install_lib creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11 creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/args.cpython-311.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/utils.cpython-311.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/_codons.cpython-311.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/_version.cpython-311.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/cigar.cpython-311.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/intervaltree.cpython-311.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/math.cpython-311.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/region.cpython-311.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/align.cpython-311.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/colorspace.cpython-311.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/compat.cpython-311.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/__pycache__/dna.cpython-311.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/qualtrim.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/_helpers.cpython-311-arm-linux-gnueabihf.so -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/io/gtf.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/io/__pycache__/gtf.cpython-311.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/io/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/io/__pycache__/fasta.cpython-311.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/io/sff.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/io/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/io/fasta.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/io/bam.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/_codons.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/_version.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/compat.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/align.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/samfixn.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/randomseq.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/cutvect.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/readlenhisto.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/bamstats.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/qualityguess.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/fastxmod.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/histogram.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/samsetop.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/fastastats.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/qgramfreq.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/align.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/fastagrep.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/compare_sequences.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/checkfastqpe.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/chars.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/bam2fastq.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/bameof.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/readcov.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/simreads.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/coverage.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/translate.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/mutate.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/fastaextract.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/addadapt.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/checkvcfref.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/commands/fixbam64.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/intervaltree.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/region.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/dna.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/__main__.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/math.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/cigar.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/args.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/ansicolor.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/reads.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/colorspace.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/sqt/utils.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/.pytest_cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/.pytest_cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/.pytest_cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/.pytest_cache/README.md -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/.pytest_cache creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/.pytest_cache/v creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.11_sqt/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/.pytest_cache/v/cache byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/qualtrim.py to qualtrim.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io/gtf.py to gtf.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io/sff.py to sff.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io/fasta.py to fasta.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/io/bam.py to bam.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/_codons.py to _codons.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/_version.py to _version.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/compat.py to compat.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/align.py to align.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/samfixn.py to samfixn.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/randomseq.py to randomseq.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/cutvect.py to cutvect.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/readlenhisto.py to readlenhisto.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/bamstats.py to bamstats.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/qualityguess.py to qualityguess.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/fastxmod.py to fastxmod.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/histogram.py to histogram.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/samsetop.py to samsetop.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/fastastats.py to fastastats.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/qgramfreq.py to qgramfreq.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/align.py to align.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/fastagrep.py to fastagrep.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/compare_sequences.py to compare_sequences.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/checkfastqpe.py to checkfastqpe.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/chars.py to chars.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/bam2fastq.py to bam2fastq.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/bameof.py to bameof.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/readcov.py to readcov.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/simreads.py to simreads.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/coverage.py to coverage.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/translate.py to translate.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/mutate.py to mutate.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/fastaextract.py to fastaextract.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/addadapt.py to addadapt.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/checkvcfref.py to checkvcfref.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/commands/fixbam64.py to fixbam64.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/intervaltree.py to intervaltree.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/region.py to region.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/dna.py to dna.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__main__.py to __main__.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/math.py to math.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/cigar.py to cigar.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/args.py to args.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/ansicolor.py to ansicolor.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/reads.py to reads.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/colorspace.py to colorspace.cpython-311.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt/utils.py to utils.cpython-311.pyc running install_egg_info running egg_info writing sqt.egg-info/PKG-INFO writing dependency_links to sqt.egg-info/dependency_links.txt writing entry points to sqt.egg-info/entry_points.txt writing requirements to sqt.egg-info/requires.txt writing top-level names to sqt.egg-info/top_level.txt reading manifest file 'sqt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'sqt.egg-info/SOURCES.txt' Copying sqt.egg-info to /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.11/dist-packages/sqt-0.8.0.egg-info Skipping SOURCES.txt running install_scripts Installing sqt script to /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/bin dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/usr/share/doc/python3-sqt install -p -m0644 debian/README.Debian debian/python3-sqt/usr/share/doc/python3-sqt/README.Debian install -p -m0644 debian/copyright debian/python3-sqt/usr/share/doc/python3-sqt/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/usr/share/doc/python3-sqt install -p -m0644 debian/.debhelper/generated/python3-sqt/dh_installchangelogs.dch.trimmed debian/python3-sqt/usr/share/doc/python3-sqt/changelog.Debian dh_installman -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/usr/share/man/man1/ install -p -m0644 ./debian/sqt.1 debian/python3-sqt/usr/share/man/man1/sqt.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-sqt/usr/share/man/man1/sqt.1 mv debian/python3-sqt/usr/share/man/man1/sqt.1.dh-new debian/python3-sqt/usr/share/man/man1/sqt.1 chmod 0644 -- debian/python3-sqt/usr/share/man/man1/sqt.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 6.20240422 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:182: supported Python versions: 3.11,3.12 (default=3.11) D: dh_python3 debhelper:174: source=python-sqt, binary packages=['python3-sqt'] D: dh_python3 dh_python3:204: processing package python3-sqt... D: dh_python3 fs:50: moving files from debian/python3-sqt/usr/lib/python3.11/dist-packages to debian/python3-sqt/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/python3-sqt/usr/lib/python3.12/dist-packages to debian/python3-sqt/usr/lib/python3/dist-packages/ D: dh_python3 fs:246: removing dist-packages/.pytest_cache D: dh_python3 fs:335: package python3-sqt details = {'requires.txt': {'debian/python3-sqt/usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/requires.txt'}, 'egg-info': {'debian/python3-sqt/usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.12'), Version('3.11')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-sqt D: dh_python3 pydist:173: trying to find dependency for cutadapt (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for matplotlib (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for pysam!=0.9.0 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for seaborn (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for xopen (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 depends:253: D={'python3-xopen', 'python3-pysam', 'python3-matplotlib', 'python3-cutadapt', 'python3:any', 'python3-seaborn', 'python3 (>= 3.11~)', 'python3 (<< 3.13)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/python3-sqt chmod a-x usr/share/doc/python3-sqt/changelog.Debian usr/share/man/man1/sqt.1 gzip -9nf usr/share/doc/python3-sqt/changelog.Debian usr/share/man/man1/sqt.1 cd '/build/reproducible-path/python-sqt-0.8.0' dh_fixperms -O--buildsystem=pybuild find debian/python3-sqt ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-sqt/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-sqt/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-sqt/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-sqt/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-sqt -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-sqt/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-sqt/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/usr/lib/debug/.dwz/arm-linux-gnueabihf dwz -mdebian/python3-sqt/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-sqt.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-sqt.debug -- debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-311-arm-linux-gnueabihf.so debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-312-arm-linux-gnueabihf.so objcopy --compress-debug-sections debian/python3-sqt/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-sqt.debug chmod 0644 -- debian/python3-sqt/usr/lib/debug/.dwz/arm-linux-gnueabihf/python3-sqt.debug dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/db objcopy --only-keep-debug --compress-debug-sections debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-311-arm-linux-gnueabihf.so debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/db/4bbd4e41dcfbc90d735101da8ccd6a3e1d4a88.debug chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/db/4bbd4e41dcfbc90d735101da8ccd6a3e1d4a88.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-311-arm-linux-gnueabihf.so objcopy --add-gnu-debuglink debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/db/4bbd4e41dcfbc90d735101da8ccd6a3e1d4a88.debug debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-311-arm-linux-gnueabihf.so install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/1e objcopy --only-keep-debug --compress-debug-sections debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-312-arm-linux-gnueabihf.so debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/1e/391587ae71bad2051e6cb0489980e4967ecbe6.debug chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/1e/391587ae71bad2051e6cb0489980e4967ecbe6.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-312-arm-linux-gnueabihf.so objcopy --add-gnu-debuglink debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/1e/391587ae71bad2051e6cb0489980e4967ecbe6.debug debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-312-arm-linux-gnueabihf.so install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-sqt/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-sqt/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-sqt/usr/lib/debug install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/usr/share/doc ln -s python3-sqt debian/.debhelper/python3-sqt/dbgsym-root/usr/share/doc/python3-sqt-dbgsym install -m0755 -d debian/.debhelper/python3-sqt dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-sqt/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/DEBIAN dpkg-shlibdeps -Tdebian/python3-sqt.substvars debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-311-arm-linux-gnueabihf.so debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-312-arm-linux-gnueabihf.so dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-sqt/DEBIAN/postinst cat debian/python3-sqt.postinst.debhelper >> debian/python3-sqt/DEBIAN/postinst chmod 0755 -- debian/python3-sqt/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-sqt/DEBIAN/prerm cat debian/python3-sqt.prerm.debhelper >> debian/python3-sqt/DEBIAN/prerm chmod 0755 -- debian/python3-sqt/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/DEBIAN echo misc:Depends= >> debian/python3-sqt.substvars echo misc:Pre-Depends= >> debian/python3-sqt.substvars install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-sqt -ldebian/changelog -Tdebian/python3-sqt.substvars -cdebian/control -Pdebian/.debhelper/python3-sqt/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-sqt-dbgsym "-DDepends=python3-sqt (= \${binary:Version})" "-DDescription=debug symbols for python3-sqt" "-DBuild-Ids=1e391587ae71bad2051e6cb0489980e4967ecbe6 db4bbd4e41dcfbc90d735101da8ccd6a3e1d4a88" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-sqt -ldebian/changelog -Tdebian/python3-sqt.substvars -cdebian/control -Pdebian/python3-sqt chmod 0644 -- debian/python3-sqt/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/DEBIAN cd debian/python3-sqt >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-sqt/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN cd debian/.debhelper/python3-sqt/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-sqt .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-sqt/dbgsym-root .. dpkg-deb: building package 'python3-sqt-dbgsym' in '../python3-sqt-dbgsym_0.8.0-8_armhf.deb'. dpkg-deb: building package 'python3-sqt' in '../python3-sqt_0.8.0-8_armhf.deb'. dpkg-genbuildinfo --build=binary -O../python-sqt_0.8.0-8_armhf.buildinfo dpkg-genchanges --build=binary -O../python-sqt_0.8.0-8_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-sqt-0.8.0/debian/source/options: --extend-diff-ignore=sqt/_version.py dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/27326 and its subdirectories I: Current time: Thu Jun 6 11:11:36 -12 2024 I: pbuilder-time-stamp: 1717715496 Thu Jun 6 23:11:55 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt32c-armhf-rb.debian.net. Thu Jun 6 23:11:55 UTC 2024 I: Preparing to do remote build '2' on virt32c-armhf-rb.debian.net. Thu Jun 6 23:20:04 UTC 2024 I: Deleting $TMPDIR on virt32c-armhf-rb.debian.net. Thu Jun 6 23:20:06 UTC 2024 I: python-sqt_0.8.0-8_armhf.changes: Format: 1.8 Date: Tue, 05 Dec 2023 21:43:36 +0700 Source: python-sqt Binary: python3-sqt python3-sqt-dbgsym Architecture: armhf Version: 0.8.0-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Lance Lin Description: python3-sqt - SeQuencing Tools for biological DNA/RNA high-throughput data Closes: 1049145 Changes: python-sqt (0.8.0-8) unstable; urgency=medium . * Team upload. * Packaging update * Standards-Version: 4.6.2 (routine-update) * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) * d/source/options: Remove .egg-info/ exclude-diff-ignore and add sqt/_version.py (Closes: #1049145) * d/control: Replace autopkgtest-pkg-python with autopkgtest-pkg-pybuild * d/rules: Add hardening option Checksums-Sha1: 064d7c1d4a3db6908906567935e42ec3795e046f 9441 python-sqt_0.8.0-8_armhf.buildinfo ee68bc3fb20e81c4f170e05482d161692f0fcd24 775920 python3-sqt-dbgsym_0.8.0-8_armhf.deb 3d992adb43569a5662394aac86dbac830aa7b4b9 162764 python3-sqt_0.8.0-8_armhf.deb Checksums-Sha256: b7b2909eb2a406225bf53c07e6c3e89306a32d576a53de74daf2a9c82869bc42 9441 python-sqt_0.8.0-8_armhf.buildinfo dfbe67762cbddc0316a04a08767249f49769b48ff962d51be01841b766bd016b 775920 python3-sqt-dbgsym_0.8.0-8_armhf.deb c47515f15886433adc3cd7cb8bd567a397c64bcde300e8d7d993e4eb97d23fee 162764 python3-sqt_0.8.0-8_armhf.deb Files: 349db7c11ea8d14ab609aa808f7b4a04 9441 science optional python-sqt_0.8.0-8_armhf.buildinfo 0a053ac64e5f4d58ac31f4e731563639 775920 debug optional python3-sqt-dbgsym_0.8.0-8_armhf.deb 330076b2f7b9fa413a8c877ffece8e7b 162764 python optional python3-sqt_0.8.0-8_armhf.deb Thu Jun 6 23:20:08 UTC 2024 I: diffoscope 270 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_32-18213.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.W5Ce2GbQ/python-sqt_0.8.0-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.W5Ce2GbQ/python-sqt_0.8.0-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.W5Ce2GbQ/python-sqt_0.8.0-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.W5Ce2GbQ/b1/python-sqt_0.8.0-8_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.W5Ce2GbQ/b2/python-sqt_0.8.0-8_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.366s) 0.366s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.026s) 0.026s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 700ms CPU time consumed: 699ms Thu Jun 6 23:20:09 UTC 2024 I: diffoscope 270 found no differences in the changes files, and a .buildinfo file also exists. Thu Jun 6 23:20:09 UTC 2024 I: python-sqt from trixie built successfully and reproducibly on armhf. Thu Jun 6 23:20:10 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Jun 6 23:20:10 UTC 2024 I: Submitting 12K b1/python-sqt_0.8.0-8_armhf.buildinfo.asc Thu Jun 6 23:20:11 UTC 2024 I: Submitting 12K b2/python-sqt_0.8.0-8_armhf.buildinfo.asc Thu Jun 6 23:20:12 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jun 6 23:20:12 UTC 2024 I: Done submitting .buildinfo files. Thu Jun 6 23:20:12 UTC 2024 I: Removing signed python-sqt_0.8.0-8_armhf.buildinfo.asc files: removed './b1/python-sqt_0.8.0-8_armhf.buildinfo.asc' removed './b2/python-sqt_0.8.0-8_armhf.buildinfo.asc'