Thu Apr 11 19:39:09 UTC 2024 I: starting to build python-pymummer/trixie/armhf on jenkins on '2024-04-11 19:38' Thu Apr 11 19:39:09 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_14/2424/console.log Thu Apr 11 19:39:09 UTC 2024 I: Downloading source for trixie/python-pymummer=0.11.0-4 --2024-04-11 19:39:09-- http://deb.debian.org/debian/pool/main/p/python-pymummer/python-pymummer_0.11.0-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2206 (2.2K) [text/prs.lines.tag] Saving to: ‘python-pymummer_0.11.0-4.dsc’ 0K .. 100% 246M=0s 2024-04-11 19:39:09 (246 MB/s) - ‘python-pymummer_0.11.0-4.dsc’ saved [2206/2206] Thu Apr 11 19:39:10 UTC 2024 I: python-pymummer_0.11.0-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pymummer Binary: python3-pymummer Architecture: all Version: 0.11.0-4 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille Homepage: https://github.com/sanger-pathogens/pymummer Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/python-pymummer Vcs-Git: https://salsa.debian.org/med-team/python-pymummer.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, fastaq, mummer, python3-pytest Package-List: python3-pymummer deb python optional arch=all Checksums-Sha1: 232bb111d99949c3a4fcf75f70a82750a87ec8b5 29334 python-pymummer_0.11.0.orig.tar.gz 2da6196e2b58a33fb08f34f592c4eed90a4acc8a 2920 python-pymummer_0.11.0-4.debian.tar.xz Checksums-Sha256: 960b7e29603f6126e8df89ded62e15399c10d9e62b501336971ee272923967ac 29334 python-pymummer_0.11.0.orig.tar.gz 9b74881446fec8d4e5b2664a703e422568dc0271bda3cd7bc36df08a8daa1035 2920 python-pymummer_0.11.0-4.debian.tar.xz Files: 6e651d5d54ff8d161e7448baa5d9fd9d 29334 python-pymummer_0.11.0.orig.tar.gz 30fdd3df0cb76298fdb99ab3c92e40f8 2920 python-pymummer_0.11.0-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJKBAEBCgA0FiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmVvN7cWHGVtb2xsaWVy QGVtbHdrczk5OS5ldQAKCRB5PPZ+jw0R2ktKD/9YTPKWGB1j/HYpjWi4RqLb0JXQ LcKnaJxYIgcZAIQQM2lhqXwnZTulIXJfJoOslSUDeNPmSQka4PPby9pIk5lwfpsN rd0YHU6kq2BseWX/yHtpGWyDCU65OvFr7GvqFd3MAOWTXG1Qxh/AHwGC+WnbRpI8 lf3+Vy8V5fZKIgQWp2MVQZ9bWlVPb4mBGyHVcxYjXGjuAj2mvBTnxIHpKkej6vow RkVCP1nsJtlCJAwjpShdSPCj2BnCTJ/5/JpsM5e3S1dJzaS9JadVnH12OwsEhLcf 6vs5/nqgrW3d2jn0hhzxpRZyj6CzPEgopVcJ622v8tqouS8l+Cj7EEmi8O0MEeI/ 7S9bLObFmsSdSm6gPyAn1w0ckwe+wiDNkcwsVL1rWZfE/xKWjP+b0WnZlCxzr5Oe fqz2wlZBRNLiQZZ6cgEIGIXrk6d5s24i9rER8n0yiP5qAwgg3gYpCRtgu3oJ/pDn tMvMWrkGa/2VTF9SkBLJyVQyPCvBWbIfsr1GyybT+5+Sxo2cwTWN7Q+Uu61MvL29 /YlMm9HzOUP8oyPr17cIO8vCZDJhC2ZiiYExWL5N6w48N5PPEODTWMLCaXqBZJno xRYqi53WL1EarKy2mSO3i/qmizDpN0IY77DEHSGTGYfW8RmRhVyNdSUZshM1W5NU OdUUDxmTwa+pynBWWQ== =dHH+ -----END PGP SIGNATURE----- Thu Apr 11 19:39:10 UTC 2024 I: Checking whether the package is not for us Thu Apr 11 19:39:10 UTC 2024 I: Starting 1st build on remote node virt32z-armhf-rb.debian.net. Thu Apr 11 19:39:10 UTC 2024 I: Preparing to do remote build '1' on virt32z-armhf-rb.debian.net. Thu Apr 11 19:40:56 UTC 2024 I: Deleting $TMPDIR on virt32z-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Apr 11 07:39:17 -12 2024 I: pbuilder-time-stamp: 1712864357 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pymummer_0.11.0-4.dsc] I: copying [./python-pymummer_0.11.0.orig.tar.gz] I: copying [./python-pymummer_0.11.0-4.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Dec 5 14:46:15 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@emlwks999.eu" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-pymummer_0.11.0-4.dsc: no acceptable signature found dpkg-source: info: extracting python-pymummer in python-pymummer-0.11.0 dpkg-source: info: unpacking python-pymummer_0.11.0.orig.tar.gz dpkg-source: info: unpacking python-pymummer_0.11.0-4.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/5691/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='fdb27b3fa4584fe69152325aaa987c04' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='5691' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ErE5AOhs/pbuilderrc_o1BT --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ErE5AOhs/b1 --logfile b1/build.log python-pymummer_0.11.0-4.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32z 6.1.0-18-armmp-lpae #1 SMP Debian 6.1.76-1 (2024-02-01) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 10 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/5691/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, fastaq, mummer, python3-pytest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19635 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on fastaq; however: Package fastaq is not installed. pbuilder-satisfydepends-dummy depends on mummer; however: Package mummer is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} fastaq{a} file{a} gawk{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libhts3{a} libhtscodecs2{a} libicu72{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} mummer{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} samtools{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-pygments wget 0 packages upgraded, 75 newly installed, 0 to remove and 0 not upgraded. Need to get 34.0 MB of archives. After unpacking 127 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-3 [69.1 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libreadline8 armhf 8.2-3+b1 [144 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libsigsegv2 armhf 2.14-1 [36.4 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf gawk armhf 1:5.2.1-2 [628 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf libpython3.11-minimal armhf 3.11.8-1 [802 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.5.0-2+b2 [80.2 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf python3.11-minimal armhf 3.11.8-1 [1707 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.11.6-1 [26.2 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf tzdata all 2024a-1 [255 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf libpython3.11-stdlib armhf 3.11.8-1 [1709 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf python3.11 armhf 3.11.8-1 [597 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.11.6-1 [9224 B] Get: 15 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.11.6-1 [26.2 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libpython3.12-minimal armhf 3.12.2-1 [793 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf python3.12-minimal armhf 3.12.2-1 [1845 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-2+b1 [314 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libmagic1 armhf 1:5.45-2+b1 [97.9 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-2+b1 [42.2 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-3 [1088 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.39.3-6 [81.2 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.0-3 [1367 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 40 http://deb.debian.org/debian trixie/main armhf libelf1 armhf 0.190-1+b1 [171 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1 [101 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b2 [599 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf python3-pkg-resources all 68.1.2-2 [241 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf python3-lib2to3 all 3.11.5-1 [77.5 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf python3-distutils all 3.11.5-1 [131 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf python3-setuptools all 68.1.2-2 [468 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf dh-python all 6.20240401 [107 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-4+b1 [18.2 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-4+b1 [50.1 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5+b3 [158 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.59.0-1 [62.0 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf libssh2-1 armhf 1.11.0-4 [197 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libcurl3-gnutls armhf 8.5.0-2 [378 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libdeflate0 armhf 1.20-1 [35.9 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf libhtscodecs2 armhf 1.6.0-1+b1 [61.3 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libhts3 armhf 1.19+ds-1 [394 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf libncurses6 armhf 6.4+20240113-1 [81.8 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf samtools armhf 1.19.2-1 [614 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf fastaq all 3.17.0-6 [47.5 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf libpython3.12-stdlib armhf 3.12.2-1 [1800 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf mummer armhf 3.23+dfsg-8 [627 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf python3.12 armhf 3.12.2-1 [653 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf python3-all armhf 3.11.6-1 [1060 B] Get: 72 http://deb.debian.org/debian trixie/main armhf python3-iniconfig all 1.1.1-2 [6396 B] Get: 73 http://deb.debian.org/debian trixie/main armhf python3-packaging all 24.0-1 [45.5 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf python3-pluggy all 1.4.0-1 [26.2 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf python3-pytest all 7.4.4-3 [239 kB] Fetched 34.0 MB in 0s (79.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19635 files and directories currently installed.) Preparing to unpack .../readline-common_8.2-3_all.deb ... Unpacking readline-common (8.2-3) ... Selecting previously unselected package libreadline8:armhf. Preparing to unpack .../libreadline8_8.2-3+b1_armhf.deb ... Unpacking libreadline8:armhf (8.2-3+b1) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../libsigsegv2_2.14-1_armhf.deb ... Unpacking libsigsegv2:armhf (2.14-1) ... Setting up readline-common (8.2-3) ... Setting up libreadline8:armhf (8.2-3+b1) ... Setting up libsigsegv2:armhf (2.14-1) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19669 files and directories currently installed.) Preparing to unpack .../gawk_1%3a5.2.1-2_armhf.deb ... Unpacking gawk (1:5.2.1-2) ... Selecting previously unselected package libpython3.11-minimal:armhf. 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Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up gawk (1:5.2.1-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:armhf (1.1.0-2+b3) ... Setting up libpython3.12-minimal:armhf (3.12.2-1) ... Setting up libnghttp2-14:armhf (1.59.0-1) ... Setting up libmagic1:armhf (1:5.45-2+b1) ... Setting up libdeflate0:armhf (1.20-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-4+b1) ... Setting up tzdata (2024a-1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Apr 11 19:40:06 UTC 2024. Universal Time is now: Thu Apr 11 19:40:06 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:armhf (6.4+20240113-1) ... Setting up autopoint (0.21-14) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-4+b1) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up mummer (3.23+dfsg-8) ... Setting up libsub-override-perl (0.10-1) ... Setting up libssh2-1:armhf (1.11.0-4) ... Setting up netbase (6.4) ... Setting up libelf1:armhf (0.190-1+b1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up python3.12-minimal (3.12.2-1) ... Setting up gettext (0.21-14+b1) ... Setting up libpython3.12-stdlib:armhf (3.12.2-1) ... Setting up libtool (2.4.7-7) ... Setting up libpython3.11-stdlib:armhf (3.11.8-1) ... Setting up python3.12 (3.12.2-1) ... Setting up libldap-2.5-0:armhf (2.5.13+dfsg-5+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libpython3-stdlib:armhf (3.11.6-1) ... Setting up python3.11 (3.11.8-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3-gnutls:armhf (8.5.0-2) ... Setting up python3 (3.11.6-1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-packaging (24.0-1) ... Setting up python3-pluggy (1.4.0-1) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up python3-iniconfig (1.1.1-2) ... Setting up libhts3:armhf (1.19+ds-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-pytest (7.4.4-3) ... Setting up python3-all (3.11.6-1) ... Setting up debhelper (13.15.3) ... Setting up samtools (1.19.2-1) ... Setting up dh-python (6.20240401) ... Setting up fastaq (3.17.0-6) ... /usr/lib/python3/dist-packages/pyfastaq/sequences.py:37: SyntaxWarning: invalid escape sequence '\s' phylip_regex = re.compile('^\s*[0-9]+\s+[0-9]+$') /usr/lib/python3/dist-packages/pyfastaq/sequences.py:38: SyntaxWarning: invalid escape sequence '\s' gbk_regex = re.compile('^LOCUS\s+\S') Processing triggers for libc-bin (2.37-15) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-pymummer-0.11.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pymummer_0.11.0-4_source.changes dpkg-buildpackage: info: source package python-pymummer dpkg-buildpackage: info: source version 0.11.0-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Lance Lin dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean LC_ALL=C.UTF-8 dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean Checking MUMmer programs found in path: OK nucmer OK show-coords OK show-snps OK delta-filter running clean removing '/build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean Checking MUMmer programs found in path: OK nucmer OK show-coords OK show-snps OK delta-filter running clean removing '/build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary LC_ALL=C.UTF-8 dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config Checking MUMmer programs found in path: OK nucmer OK show-coords OK show-snps OK delta-filter running config I: pybuild base:311: python3.11 setup.py config Checking MUMmer programs found in path: OK nucmer OK show-coords OK show-snps OK delta-filter running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build Checking MUMmer programs found in path: OK nucmer OK show-coords OK show-snps OK delta-filter running build running build_py creating /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer copying pymummer/variant.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer copying pymummer/nucmer.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer copying pymummer/snp_file.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer copying pymummer/syscall.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer copying pymummer/coords_file.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer copying pymummer/snp.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer copying pymummer/alignment.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer copying pymummer/__init__.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer I: pybuild base:311: /usr/bin/python3 setup.py build Checking MUMmer programs found in path: OK nucmer OK show-coords OK show-snps OK delta-filter running build running build_py creating /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer copying pymummer/variant.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer copying pymummer/nucmer.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer copying pymummer/snp_file.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer copying pymummer/syscall.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer copying pymummer/coords_file.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer copying pymummer/snp.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer copying pymummer/alignment.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer copying pymummer/__init__.py -> /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: mkdir /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer; cp -r /build/reproducible-path/python-pymummer-0.11.0/pymummer/tests /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/ mkdir: cannot create directory ‘/build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer’: File exists I: pybuild base:311: cd /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build; python3.12 -m pytest ============================= test session starts ============================== platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 rootdir: /build/reproducible-path/python-pymummer-0.11.0 collected 38 items pymummer/tests/alignment_test.py .................. [ 47%] pymummer/tests/coords_file_test.py ... [ 55%] pymummer/tests/nucmer_test.py ....... [ 73%] pymummer/tests/snp_file_test.py .. [ 78%] pymummer/tests/snp_test.py .. [ 84%] pymummer/tests/syscall_test.py .. [ 89%] pymummer/tests/variant_test.py .... [100%] =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/pyfastaq/__init__.py:1 /usr/lib/python3/dist-packages/pyfastaq/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html from pkg_resources import get_distribution -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================== 38 passed, 1 warning in 0.53s ========================= I: pybuild pybuild:308: mkdir /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer; cp -r /build/reproducible-path/python-pymummer-0.11.0/pymummer/tests /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/ mkdir: cannot create directory ‘/build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer’: File exists I: pybuild base:311: cd /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build; python3.11 -m pytest ============================= test session starts ============================== platform linux -- Python 3.11.8, pytest-7.4.4, pluggy-1.4.0 rootdir: /build/reproducible-path/python-pymummer-0.11.0 collected 38 items pymummer/tests/alignment_test.py .................. [ 47%] pymummer/tests/coords_file_test.py ... [ 55%] pymummer/tests/nucmer_test.py ....... [ 73%] pymummer/tests/snp_file_test.py .. [ 78%] pymummer/tests/snp_test.py .. [ 84%] pymummer/tests/syscall_test.py .. [ 89%] pymummer/tests/variant_test.py .... [100%] =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/pyfastaq/__init__.py:1 /usr/lib/python3/dist-packages/pyfastaq/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html from pkg_resources import get_distribution -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================== 38 passed, 1 warning in 0.81s ========================= create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-pymummer/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer Checking MUMmer programs found in path: OK nucmer OK show-coords OK show-snps OK delta-filter running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12 creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/variant.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/nucmer.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/snp_file_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/coords_file_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/coords_file_test_no_header.coords -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/snp_file_test_no_header.snps -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.coords -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/snp_file_test_with_header.snps -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.no_offset.crunch -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/nucmer_test_out.coords.snps -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.qry.fa -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/nucmer_test_write_script_with_snps.sh -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.ref.fa -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/nucmer_test_write_script_no_snps.sh -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/snp_file_test_get_all_variants.snps -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/nucmer_test_out.coords -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.qry.fa.fai -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/nucmer_test_qry.fa -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/nucmer_test_ref.fa -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.with_offset.crunch -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.ref.fa.fai -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/data/coords_file_test_with_header.coords -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/snp_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/alignment_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/syscall_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/variant_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/nucmer_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/__pycache__/syscall_test.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/__pycache__/variant_test.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/__pycache__/coords_file_test.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/__pycache__/nucmer_test.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/__pycache__/snp_test.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/__pycache__/snp_file_test.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/tests/__pycache__/alignment_test.cpython-312-pytest-7.4.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/snp_file.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/syscall.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/coords_file.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/snp.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/alignment.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/__init__.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/__pycache__/syscall.cpython-312.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/__pycache__/variant.cpython-312.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/__pycache__/nucmer.cpython-312.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/__pycache__/snp_file.cpython-312.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/__pycache__/snp.cpython-312.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/__pycache__/alignment.cpython-312.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.12_pymummer/build/pymummer/__pycache__/coords_file.cpython-312.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/__pycache__ byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/variant.py to variant.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/nucmer.py to nucmer.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/snp_file_test.py to snp_file_test.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/coords_file_test.py to coords_file_test.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/snp_test.py to snp_test.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/alignment_test.py to alignment_test.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/syscall_test.py to syscall_test.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/variant_test.py to variant_test.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/tests/nucmer_test.py to nucmer_test.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/snp_file.py to snp_file.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/syscall.py to syscall.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/coords_file.py to coords_file.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/snp.py to snp.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/alignment.py to alignment.cpython-312.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating pymummer.egg-info writing pymummer.egg-info/PKG-INFO writing dependency_links to pymummer.egg-info/dependency_links.txt writing requirements to pymummer.egg-info/requires.txt writing top-level names to pymummer.egg-info/top_level.txt writing manifest file 'pymummer.egg-info/SOURCES.txt' reading manifest file 'pymummer.egg-info/SOURCES.txt' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'pymummer.egg-info/SOURCES.txt' Copying pymummer.egg-info to /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.12/dist-packages/pymummer-0.11.0.egg-info Skipping SOURCES.txt running install_scripts I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer Checking MUMmer programs found in path: OK nucmer OK show-coords OK show-snps OK delta-filter running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11 creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/variant.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/nucmer.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/snp_file_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/coords_file_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/data/coords_file_test_no_header.coords -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/data/snp_file_test_no_header.snps -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.coords -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/data/snp_file_test_with_header.snps -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.no_offset.crunch -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/data/nucmer_test_out.coords.snps -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.qry.fa -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/data/nucmer_test_write_script_with_snps.sh -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.ref.fa -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/data/nucmer_test_write_script_no_snps.sh -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/data/snp_file_test_get_all_variants.snps -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/data/nucmer_test_out.coords -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.qry.fa.fai -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/data/nucmer_test_qry.fa -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/data/nucmer_test_ref.fa -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.with_offset.crunch -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/data/coords_file_test_convert_to_msp_crunch.ref.fa.fai -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/data/coords_file_test_with_header.coords -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/data copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/snp_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/alignment_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/syscall_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/variant_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/nucmer_test.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/__pycache__/nucmer_test.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/__pycache__/variant_test.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/__pycache__/alignment_test.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/__pycache__/coords_file_test.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/__pycache__/snp_file_test.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/__pycache__/snp_test.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/tests/__pycache__/syscall_test.cpython-311-pytest-7.4.4.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/snp_file.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/syscall.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/coords_file.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/snp.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/alignment.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/__init__.py -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer creating /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/__pycache__/alignment.cpython-311.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/__pycache__/nucmer.cpython-311.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/__pycache__/snp.cpython-311.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/__pycache__/coords_file.cpython-311.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/__pycache__/snp_file.cpython-311.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/__pycache__/syscall.cpython-311.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/__pycache__ copying /build/reproducible-path/python-pymummer-0.11.0/.pybuild/cpython3_3.11_pymummer/build/pymummer/__pycache__/variant.cpython-311.pyc -> /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/__pycache__ byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/variant.py to variant.cpython-311.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/nucmer.py to nucmer.cpython-311.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/snp_file_test.py to snp_file_test.cpython-311.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/coords_file_test.py to coords_file_test.cpython-311.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/snp_test.py to snp_test.cpython-311.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/alignment_test.py to alignment_test.cpython-311.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/syscall_test.py to syscall_test.cpython-311.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/variant_test.py to variant_test.cpython-311.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/tests/nucmer_test.py to nucmer_test.cpython-311.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/snp_file.py to snp_file.cpython-311.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/syscall.py to syscall.cpython-311.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/coords_file.py to coords_file.cpython-311.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/snp.py to snp.cpython-311.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/alignment.py to alignment.cpython-311.pyc byte-compiling /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer/__init__.py to __init__.cpython-311.pyc running install_egg_info running egg_info writing pymummer.egg-info/PKG-INFO writing dependency_links to pymummer.egg-info/dependency_links.txt writing requirements to pymummer.egg-info/requires.txt writing top-level names to pymummer.egg-info/top_level.txt reading manifest file 'pymummer.egg-info/SOURCES.txt' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'pymummer.egg-info/SOURCES.txt' Copying pymummer.egg-info to /build/reproducible-path/python-pymummer-0.11.0/debian/python3-pymummer/usr/lib/python3.11/dist-packages/pymummer-0.11.0.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pymummer' in '../python3-pymummer_0.11.0-4_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pymummer_0.11.0-4_armhf.buildinfo dpkg-genchanges --build=binary -O../python-pymummer_0.11.0-4_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/5691 and its subdirectories I: Current time: Thu Apr 11 07:40:51 -12 2024 I: pbuilder-time-stamp: 1712864451 Thu Apr 11 19:40:59 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ff64a-armhf-rb.debian.net. Thu Apr 11 19:40:59 UTC 2024 I: Preparing to do remote build '2' on ff64a-armhf-rb.debian.net. Thu Apr 11 19:45:15 UTC 2024 I: Deleting $TMPDIR on ff64a-armhf-rb.debian.net. Thu Apr 11 19:45:18 UTC 2024 I: python-pymummer_0.11.0-4_armhf.changes: Format: 1.8 Date: Mon, 04 Dec 2023 20:52:14 +0700 Source: python-pymummer Binary: python3-pymummer Architecture: all Version: 0.11.0-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Lance Lin Description: python3-pymummer - Python 3 interface to MUMmer Closes: 1046452 Changes: python-pymummer (0.11.0-4) unstable; urgency=medium . * Team upload. * Packaging update * Standards-Version: 4.6.2 (routine-update) * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) * d/rules: Remove override_dh_auto_clean and let dh-sequence-python3 clean .egg-info/ (Closes: #1046452) * d/rules: Replace override_dh_auto_test with PYBUILD variables * d/control: Replace autopkgtest-pkg-python with autopkgtest-pkg-pybuild * d/tests: Removed, run upstream tests with autopkgtest-pkg-pybuild Checksums-Sha1: 9f51635ccaad2891498dded1b03382779d74e022 6634 python-pymummer_0.11.0-4_armhf.buildinfo d4222cc6f5be5fbf78ac21f64c5bb97d313255d8 18016 python3-pymummer_0.11.0-4_all.deb Checksums-Sha256: df0c69765b4b7773b468d52a252e7c5018cbc059db58da4dee886a5673d1aa40 6634 python-pymummer_0.11.0-4_armhf.buildinfo 319055a7d70a3b3523bb4191ed44d5a09c2b128afdf58e5fb982a5e17adc1813 18016 python3-pymummer_0.11.0-4_all.deb Files: 0ab8d4924d0f06abac6a4938fb13dda2 6634 python optional python-pymummer_0.11.0-4_armhf.buildinfo 9311b62fc07ab89c0749ff749b995d70 18016 python optional python3-pymummer_0.11.0-4_all.deb Thu Apr 11 19:45:19 UTC 2024 I: diffoscope 263 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_14-2424.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ErE5AOhs/python-pymummer_0.11.0-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ErE5AOhs/python-pymummer_0.11.0-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ErE5AOhs/python-pymummer_0.11.0-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ErE5AOhs/b1/python-pymummer_0.11.0-4_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.ErE5AOhs/b2/python-pymummer_0.11.0-4_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.383s) 0.383s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.017s) 0.017s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 810ms CPU time consumed: 789ms Thu Apr 11 19:45:24 UTC 2024 I: diffoscope 263 found no differences in the changes files, and a .buildinfo file also exists. Thu Apr 11 19:45:24 UTC 2024 I: python-pymummer from trixie built successfully and reproducibly on armhf. Thu Apr 11 19:45:33 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Apr 11 19:45:33 UTC 2024 I: Submitting 8.0K b1/python-pymummer_0.11.0-4_armhf.buildinfo.asc Thu Apr 11 19:45:34 UTC 2024 I: Submitting 8.0K b2/python-pymummer_0.11.0-4_armhf.buildinfo.asc Thu Apr 11 19:45:35 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Apr 11 19:45:35 UTC 2024 I: Done submitting .buildinfo files. Thu Apr 11 19:45:35 UTC 2024 I: Removing signed python-pymummer_0.11.0-4_armhf.buildinfo.asc files: removed './b1/python-pymummer_0.11.0-4_armhf.buildinfo.asc' removed './b2/python-pymummer_0.11.0-4_armhf.buildinfo.asc'