Thu Oct 10 16:17:02 UTC 2024 I: starting to build python-pairix/trixie/armhf on jenkins on '2024-10-10 16:16' Thu Oct 10 16:17:02 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_18/7738/console.log Thu Oct 10 16:17:02 UTC 2024 I: Downloading source for trixie/python-pairix=0.3.8-1 --2024-10-10 16:17:02-- http://deb.debian.org/debian/pool/main/p/python-pairix/python-pairix_0.3.8-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2378 (2.3K) [text/prs.lines.tag] Saving to: ‘python-pairix_0.3.8-1.dsc’ 0K .. 100% 299M=0s 2024-10-10 16:17:03 (299 MB/s) - ‘python-pairix_0.3.8-1.dsc’ saved [2378/2378] Thu Oct 10 16:17:03 UTC 2024 I: python-pairix_0.3.8-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pairix Binary: python3-pairix, python-pairix-examples Architecture: any all Version: 0.3.8-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/4dn-dcic/pairix Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-pairix Vcs-Git: https://salsa.debian.org/med-team/python-pairix.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, zlib1g-dev, python3-pytest Package-List: python-pairix-examples deb science optional arch=all python3-pairix deb python optional arch=any Checksums-Sha1: 44b8cb8eecab61a73d5e515bb4ed2735f0380f91 175468779 python-pairix_0.3.8.orig.tar.gz b8915266a4dbab425d40a07424aa643cb5da85bc 6000 python-pairix_0.3.8-1.debian.tar.xz Checksums-Sha256: 51e349c034eda3bce21d9f89a8e477471d2db5a3ef4424a39999d1ec316e2726 175468779 python-pairix_0.3.8.orig.tar.gz 3f20fc6df7eeb4da2da82d1e945d091e4b0d23d335cc61a5868b7b97ada5357f 6000 python-pairix_0.3.8-1.debian.tar.xz Files: 7497099a7c2659ab067828c4f3e52c4b 175468779 python-pairix_0.3.8.orig.tar.gz 6ddc0663044cbf801acc7bfabc624821 6000 python-pairix_0.3.8-1.debian.tar.xz Dgit: 347c22a531db9be7c169a261d36ee48ac35454b0 debian archive/debian/0.3.8-1 https://git.dgit.debian.org/python-pairix -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmbHqbsUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdq2pg/9Fy+9pKIqLLeNKSfUXPEcNzXz+v4h tpf2t7Ya/SzzY3+diu7VjwdJW21wHIwWrGNyS0ymHOlA1H5MW/vtZlgHZ0Ib1gXR rOXtSLJAkghi6ScF6e45MRL3knnkyz3dItyPCgrv64h3TTqwrDaJm4QTsVexTGAQ 68euY/jANb6NfYZsZweHUhCLwqBB8m931zvexykQuDFGnm1dFaATNLSf1EZaLZqF 0zBJoyODYr+7Xf8o0/+5UpjZpgu5U88NHW9rrcvzvll/0ssPoncQFBgVTNyTdUgv dEVTsGdV4gsK0H0uC7om0T8f0RXDecLTGOSfq+NLDMxuqnLIatPyoWxljwnv3TbZ IU1uHE5cU/0ooCuHP4INCPvSekDdu4/GCVp8+isBx7fpZxF1n50vn6sgO7+D1lOy k86GlsiAR8mODVhzyEy/RUTJNfV4gBS3NFalHwK/tojCPjiuR0/tz/5IpteKc85C Caj7aBWnV/yg1R3JGzKafZP8N9/pjSL335aEnLA/I4CpIoHK52BFTsugj/kNuR5V No6HF6ELLc6Zxn0wpBg64X7P/3UfjIzv6dvApNLyCIT2qIQe0Us29YTWtdB8C+Cg zVG+99BpxwtaQdKhcTXRUwL6ZYm3j69x8c+L7wqual7+D4/a2CJd5DE74eX6UokI XT7aLwZTs39WiMA= =5pZZ -----END PGP SIGNATURE----- Thu Oct 10 16:17:03 UTC 2024 I: Checking whether the package is not for us Thu Oct 10 16:17:03 UTC 2024 I: Starting 1st build on remote node ff64a-armhf-rb.debian.net. Thu Oct 10 16:17:03 UTC 2024 I: Preparing to do remote build '1' on ff64a-armhf-rb.debian.net. Thu Oct 10 16:42:12 UTC 2024 I: Deleting $TMPDIR on ff64a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 10 04:17:19 -12 2024 I: pbuilder-time-stamp: 1728577039 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pairix_0.3.8-1.dsc] I: copying [./python-pairix_0.3.8.orig.tar.gz] I: copying [./python-pairix_0.3.8-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Aug 22 21:12:27 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-pairix_0.3.8-1.dsc: no acceptable signature found dpkg-source: info: extracting python-pairix in python-pairix-0.3.8 dpkg-source: info: unpacking python-pairix_0.3.8.orig.tar.gz dpkg-source: info: unpacking python-pairix_0.3.8-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python3.10 dpkg-source: info: applying gcc-14.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/17219/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='1b74b41f30c0406faa2263b7f36a4ee2' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='17219' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8MhL4xTo/pbuilderrc_0zrz --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8MhL4xTo/b1 --logfile b1/build.log python-pairix_0.3.8-1.dsc' SUDO_GID='114' SUDO_UID='109' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux ff64a 6.1.0-26-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/17219/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, zlib1g-dev, python3-pytest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19508 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pygments wget 0 packages upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 35.0 MB of archives. After unpacking 131 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libpython3.12-minimal armhf 3.12.6-1 [800 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.3-1 [83.2 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf python3.12-minimal armhf 3.12.6-1 [1812 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.1-1 [22.1 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 12 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3 [71.1 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libnsl2 armhf 1.3.0-3+b2 [34.9 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libreadline8t64 armhf 8.2-5 [146 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libpython3.12-stdlib armhf 3.12.6-1 [1817 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf python3.12 armhf 3.12.6-1 [669 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-8 [88.8 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 44 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.191-2 [183 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5 [9075 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.1 [604 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf python3-autocommand all 2.2.2-3 [13.6 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf python3-typeguard all 4.3.0-1 [36.5 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf python3-inflect all 7.3.1-2 [32.4 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf python3-jaraco.context all 6.0.0-1 [7984 B] Get: 58 http://deb.debian.org/debian trixie/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf python3-pkg-resources all 74.1.2-2 [213 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf python3-zipp all 3.20.2-1 [10.3 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf python3-setuptools all 74.1.2-2 [736 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf dh-python all 6.20240824 [109 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf libexpat1-dev armhf 2.6.3-1 [139 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf libjs-sphinxdoc all 7.4.7-3 [158 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf libpython3.12t64 armhf 3.12.6-1 [1847 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1 [904 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf libpython3.12-dev armhf 3.12.6-1 [3809 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf libpython3-dev armhf 3.12.6-1 [9952 B] Get: 71 http://deb.debian.org/debian trixie/main armhf libpython3-all-dev armhf 3.12.6-1 [1064 B] Get: 72 http://deb.debian.org/debian trixie/main armhf python3-all armhf 3.12.6-1 [1040 B] Get: 73 http://deb.debian.org/debian trixie/main armhf python3.12-dev armhf 3.12.6-1 [506 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf python3-dev armhf 3.12.6-1 [26.1 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf python3-all-dev armhf 3.12.6-1 [1068 B] Get: 76 http://deb.debian.org/debian trixie/main armhf python3-iniconfig all 1.1.1-2 [6396 B] Get: 77 http://deb.debian.org/debian trixie/main armhf python3-packaging all 24.1-1 [45.8 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf python3-pluggy all 1.5.0-1 [26.9 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf python3-pytest all 8.3.3-1 [249 kB] Fetched 35.0 MB in 2s (19.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19508 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.6-1_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.6-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.3-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.6-1_armhf.deb ... Unpacking python3.12-minimal (3.12.6-1) ... Setting up libpython3.12-minimal:armhf (3.12.6-1) ... Setting up libexpat1:armhf (2.6.3-1) ... Setting up python3.12-minimal (3.12.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19828 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_armhf.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../04-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../05-libcom-err2_1.47.1-1_armhf.deb ... Unpacking libcom-err2:armhf (1.47.1-1) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../06-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... 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Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:armhf. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_armhf.deb ... Unpacking libnsl2:armhf (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../14-libreadline8t64_8.2-5_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:armhf. Preparing to unpack .../15-libpython3.12-stdlib_3.12.6-1_armhf.deb ... Unpacking libpython3.12-stdlib:armhf (3.12.6-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.6-1_armhf.deb ... Unpacking python3.12 (3.12.6-1) ... 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Setting up m4 (1.4.19-4) ... Setting up libcom-err2:armhf (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:armhf (0.191-2) ... Setting up libkrb5support0:armhf (1.21.3-3) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Oct 10 16:20:13 UTC 2024. Universal Time is now: Thu Oct 10 16:20:13 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libexpat1-dev:armhf (2.6.3-1) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:armhf (1.21.3-3) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up netbase (6.4) ... Setting up libkrb5-3:armhf (1.21.3-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:armhf (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-3) ... Setting up libreadline8t64:armhf (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:armhf (1.3.0-3+b2) ... Setting up libpython3.12-stdlib:armhf (3.12.6-1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-pairix-0.3.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pairix_0.3.8-1_source.changes dpkg-buildpackage: info: source package python-pairix dpkg-buildpackage: info: source version 0.3.8-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:452: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:452: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:452: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_ext building 'pypairix' extension creating build creating build/temp.linux-armv7l-cpython-312 creating build/temp.linux-armv7l-cpython-312/src arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pairix-0.3.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.12 -c src/bgzf.c -o build/temp.linux-armv7l-cpython-312/src/bgzf.o src/bgzf.c: In function 'bgzf_block_length': src/bgzf.c:331:34: warning: unused variable 'remaining' [-Wunused-variable] 331 | int count, block_length, remaining; | ^~~~~~~~~ src/bgzf.c:330:47: warning: unused variable 'compressed_block' [-Wunused-variable] 330 | uint8_t header[BLOCK_HEADER_LENGTH], *compressed_block; | ^~~~~~~~~~~~~~~~ src/bgzf.c: In function 'bgzf_flush': src/bgzf.c:419:75: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 419 | if (fwrite(fp->compressed_block, 1, block_length, fp->fp) != block_length) { | ^~ src/bgzf.c: In function 'bgzf_close': src/bgzf.c:456:18: warning: variable 'count' set but not used [-Wunused-but-set-variable] 456 | int ret, count, block_length; | ^~~~~ arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pairix-0.3.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.12 -c src/bgzip.c -o build/temp.linux-armv7l-cpython-312/src/bgzip.o src/bgzip.c: In function 'main': src/bgzip.c:198:25: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result] 198 | write(f_dst, buffer, c); | ^~~~~~~~~~~~~~~~~~~~~~~ src/bgzip.c: In function 'write_open': src/bgzip.c:57:25: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result] 57 | scanf("%c", &c); | ^~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pairix-0.3.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.12 -c src/index.c -o build/temp.linux-armv7l-cpython-312/src/index.o src/index.c: In function 'merge_chunks': src/index.c:354:39: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 354 | for (l = 1; l < p->n; ++l) { | ^ src/index.c: In function 'ti_index_core': src/index.c:399:28: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long long unsigned int'} and 'int32_t' {aka 'int'} [-Wsign-compare] 399 | if (lineno <= idx->conf.line_skip || str->s[0] == idx->conf.meta_char) { | ^~ src/index.c:423:30: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 423 | if (intv.bin != last_bin) { // then possibly write the binning index | ^~ src/index.c:431:35: warning: comparison of integer expressions of different signedness: 'int64_t' {aka 'long long int'} and 'uint64_t' {aka 'long long unsigned int'} [-Wsign-compare] 431 | if (bgzf_tell(fp) <= last_off) { | ^~ src/index.c: In function 'ti_index_save': src/index.c:510:31: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'khint_t' {aka 'unsigned int'} [-Wsign-compare] 510 | for (i = 0; i < kh_size(idx->tname); ++i) | ^ src/index.c:514:31: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'khint_t' {aka 'unsigned int'} [-Wsign-compare] 514 | for (i = 0; i < kh_size(idx->tname); ++i) | ^ src/index.c:534:60: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 534 | for (x = 0; (int)x < p->n; ++x) { | ^ src/index.c:539:60: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 539 | for (x = 0; (int)x < p->n; ++x) { | ^ src/index.c: In function 'ti_index_load_core': src/index.c:659:47: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 659 | for (x = 0; x < p->n; ++x) { | ^ src/index.c: In function 'ti_parse_region2d': src/index.c:864:69: warning: passing argument 1 of 'ti_get_region_split_character' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 864 | char region_split_character = ti_get_region_split_character(idx); | ^~~ In file included from src/index.c:11: src/pairix.h:218:56: note: expected 'ti_index_t *' {aka 'struct __ti_index_t *'} but argument is of type 'const ti_index_t *' {aka 'const struct __ti_index_t *'} 218 | char ti_get_region_split_character(ti_index_t *idx); | ~~~~~~~~~~~~^~~ src/index.c:878:30: warning: passing argument 1 of 'ti_get_sc2' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 878 | int dim = ti_get_sc2(idx)+1==0?1:2; | ^~~ src/pairix.h:209:36: note: expected 'ti_index_t *' {aka 'struct __ti_index_t *'} but argument is of type 'const ti_index_t *' {aka 'const struct __ti_index_t *'} 209 | int ti_get_sc2(ti_index_t *idx); | ~~~~~~~~~~~~^~~ src/index.c: In function 'reg2bins': src/index.c:974:56: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 974 | for (k = 1 + (beg>>TAD_LIDX_SHIFT_PL12); k <= 1 + (end>>TAD_LIDX_SHIFT_PL12); ++k) list[i++] = k; | ^~ src/index.c:975:55: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 975 | for (k = 9 + (beg>>TAD_LIDX_SHIFT_PL9); k <= 9 + (end>>TAD_LIDX_SHIFT_PL9); ++k) list[i++] = k; | ^~ src/index.c:976:55: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 976 | for (k = 73 + (beg>>TAD_LIDX_SHIFT_PL6); k <= 73 + (end>>TAD_LIDX_SHIFT_PL6); ++k) list[i++] = k; | ^~ src/index.c:977:55: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 977 | for (k = 585 + (beg>>TAD_LIDX_SHIFT_PL3); k <= 585 + (end>>TAD_LIDX_SHIFT_PL3); ++k) list[i++] = k; | ^~ src/index.c:978:51: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 978 | for (k = 4681 + (beg>>TAD_LIDX_SHIFT); k <= 4681 + (end>>TAD_LIDX_SHIFT); ++k) list[i++] = k; | ^~ src/index.c: In function 'ti_iter_query': src/index.c:1038:39: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare] 1038 | for (j = 0; j < p->n; ++j) | ^ src/index.c: In function 'ti_querys_2d_general': src/index.c:1242:30: warning: initialization discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1242 | *sp=0; char *chr1 = reg; | ^~~ src/index.c: In function 'create_merged_iter': src/index.c:1469:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 1469 | if( miter->iu = calloc(n,sizeof(iter_unit*))) { | ^~~~~ src/index.c: In function 'merged_ti_read': src/index.c:1537:19: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1537 | miu[i]->s = ti_iter_read(miu[i]->t->fp, miu[i]->iter, miu[i]->len, seqonly); | ^ src/index.c:1543:17: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1543 | miu[0]->s = ti_iter_read(miu[0]->t->fp, miu[0]->iter, miu[0]->len, seqonly); // get next entry for the flushed iter | ^ src/index.c: In function 'sequential_ti_read': src/index.c:1573:15: warning: initialization discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1573 | char *s = ti_iter_read(siter->t->fp,siter->iter[siter->curr], len, 0); | ^~~~~~~~~~~~ src/index.c:1576:9: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1576 | s = ti_iter_read(siter->t->fp,siter->iter[siter->curr], len, 0); | ^ src/index.c: In function 'flip_region': src/index.c:1744:19: warning: variable 'split_pos' set but not used [-Wunused-but-set-variable] 1744 | int l, i, l2, split_pos; | ^~~~~~~~~ src/index.c: In function 'querys_2D_wrapper': src/index.c:1911:34: warning: passing argument 1 of 'flip_region' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1911 | char *reg2 = flip_region(reg, get_region_split_character(tb)); | ^~~ src/index.c:1743:27: note: expected 'char *' but argument is of type 'const char *' 1743 | char *flip_region ( char* s, char region_split_character) { | ~~~~~~^ src/index.c: In function 'check_triangle': src/index.c:1975:48: warning: passing argument 1 of 'flip_region' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1975 | const char *reg2 = flip_region(seqnames[i], ti_get_region_split_character(idx)); | ~~~~~~~~^~~ src/index.c:1743:27: note: expected 'char *' but argument is of type 'const char *' 1743 | char *flip_region ( char* s, char region_split_character) { | ~~~~~~^ src/index.c:1977:64: warning: passing argument 1 of 'free' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1977 | if(ti_get_tid(idx, reg2)!=-1) { free(seqnames); free(reg2); return(0); } // not a triangle | ^~~~ In file included from src/khash.h:94, from src/index.c:4: /usr/include/stdlib.h:687:25: note: expected 'void *' but argument is of type 'const char *' 687 | extern void free (void *__ptr) __THROW; | ~~~~~~^~~~~ src/index.c:1978:14: warning: passing argument 1 of 'free' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 1978 | free(reg2); | ^~~~ /usr/include/stdlib.h:687:25: note: expected 'void *' but argument is of type 'const char *' 687 | extern void free (void *__ptr) __THROW; | ~~~~~~^~~~~ arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pairix-0.3.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.12 -c src/knetfile.c -o build/temp.linux-armv7l-cpython-312/src/knetfile.o In file included from src/knetfile.c:49: src/knetfile.c: In function 'kftp_send_cmd': src/knetfile.h:9:32: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result] 9 | #define netwrite(fd, ptr, len) write(fd, ptr, len) | ^~~~~~~~~~~~~~~~~~~ src/knetfile.c:239:9: note: in expansion of macro 'netwrite' 239 | netwrite(ftp->ctrl_fd, cmd, strlen(cmd)); | ^~~~~~~~ src/knetfile.c: In function 'khttp_connect_file': src/knetfile.h:9:32: warning: ignoring return value of 'write' declared with attribute 'warn_unused_result' [-Wunused-result] 9 | #define netwrite(fd, ptr, len) write(fd, ptr, len) | ^~~~~~~~~~~~~~~~~~~ src/knetfile.c:418:9: note: in expansion of macro 'netwrite' 418 | netwrite(fp->fd, buf, l); | ^~~~~~~~ arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pairix-0.3.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.12 -c src/kstring.c -o build/temp.linux-armv7l-cpython-312/src/kstring.o src/kstring.c: In function 'ksprintf': src/kstring.c:15:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 15 | if (l + 1 > s->m - s->l) { | ^ arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pairix-0.3.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE=1 -Isrc -I/usr/include/python3.12 -c src/pairixmodule.c -o build/temp.linux-armv7l-cpython-312/src/pairixmodule.o src/pairixmodule.c: In function 'pairix_new': src/pairixmodule.c:367:9: warning: unused variable 'i' [-Wunused-variable] 367 | int i; | ^ src/pairixmodule.c: In function 'pairix_querys_2D': src/pairixmodule.c:559:28: warning: passing argument 1 of 'flip_region' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 559 | reg2 = flip_region(reg, get_region_split_character(self->tb)); | ^~~ In file included from src/pairixmodule.c:34: src/pairix.h:223:33: note: expected 'char *' but argument is of type 'const char *' 223 | char* flip_region(char *s, char region_split_character); | ~~~~~~^ src/pairixmodule.c: In function 'pairix_get_header': src/pairixmodule.c:693:15: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 693 | while ((s = sequential_ti_read(siter, &len)) != 0) { | ^ src/pairixmodule.c:704:15: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 704 | while ((s = sequential_ti_read(siter, &len)) != 0) { | ^ src/pairixmodule.c: In function 'pairix_get_chromsize': src/pairixmodule.c:726:15: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 726 | while ((s = sequential_ti_read(siter, &len)) != 0) { | ^ src/pairixmodule.c:738:15: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 738 | while ((s = sequential_ti_read(siter, &len)) != 0) { | ^ arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pairix-0.3.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/src/bgzf.o build/temp.linux-armv7l-cpython-312/src/bgzip.o build/temp.linux-armv7l-cpython-312/src/index.o build/temp.linux-armv7l-cpython-312/src/knetfile.o build/temp.linux-armv7l-cpython-312/src/kstring.o build/temp.linux-armv7l-cpython-312/src/pairixmodule.o -L/usr/lib/arm-linux-gnueabihf -lz -o /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/pypairix.cpython-312-arm-linux-gnueabihf.so dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: cp -a /build/reproducible-path/python-pairix-0.3.8/samples /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build; cp -a /build/reproducible-path/python-pairix-0.3.8/VERSION.txt /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build; I: pybuild base:311: cd /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build; python3.12 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.12.6, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pairix-0.3.8 plugins: typeguard-4.3.0 collected 48 items test/test_oldindex.py ........................ [ 50%] test/test_oldindex2.py ........................ [100%] =============================== warnings summary =============================== test/test_oldindex.py:60 /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/test/test_oldindex.py:60: SyntaxWarning: invalid escape sequence '\s' fields = line.rstrip().split('\s+') test/test_oldindex2.py:59 /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/test/test_oldindex2.py:59: SyntaxWarning: invalid escape sequence '\s' fields = line.rstrip().split('\s+') -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================== 48 passed, 2 warnings in 69.59s (0:01:09) =================== The file is a triangle. The file is a triangle. The file is not a triangle. The file is a triangle. The file is a triangle. The file is not a triangle. create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix /usr/lib/python3/dist-packages/setuptools/dist.py:452: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_ext running install_lib creating /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix creating /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr creating /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib creating /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12 creating /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test_merged_nodups.bsorted.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples creating /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2 copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/merged_nodups.space.chrblock_sorted.subsample1.txt.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2 copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/merged_nodups.space.chrblock_sorted.subsample1.txt.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2 copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/SRR1171591.variants.snp.vqsr.p.vcf.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2 copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/test_4dn.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2 copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/4dn.bsorted.chr21_22_only.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2 copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/mock.largechr.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2 copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/test_4dn.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2 copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2 copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/merged_nodup.tab.chrblock_sorted.txt.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2 copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/4dn.bsorted.chr21_22_only.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2 copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2 copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/mock.largechr.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2 copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/merged_nodup.tab.chrblock_sorted.txt.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2 copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index2/SRR1171591.variants.snp.vqsr.p.vcf.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index2 copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/hg19.chrom.sizes.chr21_22_only -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample1.txt.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.txt.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample1.txt.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.ff.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test_juicer_shortform.bsorted.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/hg19.chrom.sizes.-chr -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test_old_merged_nodups.txt -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/SRR1171591.variants.snp.vqsr.p.vcf.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test_4dn_2.bsorted.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test_merged_nodups.txt.bsorted.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample2.txt.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.nofrag.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test_4dn.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/4dn.bsorted.chr21_22_only.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/mock.largechr.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test_old_merged_nodups.bsorted.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test_4dn.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test_merged_nodups.txt -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/4dn.bsorted.chr21_22_only.largechr.pairs -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample2.txt.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test_old_merged_nodups.bsorted.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test_old_merged_nodups.pairs -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test_merged_nodups.txt.bsorted.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/hg19.chrom.sizes.chr21_22_only:50000 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test_juicer_shortform.bsorted.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodup.tab.chrblock_sorted.txt.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test.bed -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test_4dn_2.bsorted.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.nofrag.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test_old_merged_nodups.txt.bsorted.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.pairs -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/4dn.bsorted.chr21_22_only.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test_juicer_shortform.txt -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test_4dn.cp.pairs -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test.regions -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test_merged_nodups.pairs -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/mock.largechr.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples creating /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_merged_nodups.bsorted.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/hg19.chrom.sizes.chr21_22_only -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample1.txt.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.txt.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample1.txt.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.ff.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_juicer_shortform.bsorted.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/hg19.chrom.sizes.-chr -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_old_merged_nodups.txt -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/SRR1171591.variants.snp.vqsr.p.vcf.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_4dn_2.bsorted.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_merged_nodups.txt.bsorted.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample2.txt.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.nofrag.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_4dn.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/4dn.bsorted.chr21_22_only.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/mock.largechr.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_old_merged_nodups.bsorted.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_4dn.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_merged_nodups.txt -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample2.txt.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_old_merged_nodups.bsorted.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_old_merged_nodups.pairs -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_merged_nodups.txt.bsorted.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/hg19.chrom.sizes.chr21_22_only:50000 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_juicer_shortform.bsorted.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodup.tab.chrblock_sorted.txt.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test.bed -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_4dn_2.bsorted.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.nofrag.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_old_merged_nodups.txt.bsorted.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.pairs -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/4dn.bsorted.chr21_22_only.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_juicer_shortform.txt -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/4dn.bsorted.chr21_22_only.nontriangle.pairs.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_4dn.cp.pairs -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test.regions -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_merged_nodups.pairs -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/mock.largechr.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodup.tab.chrblock_sorted.txt.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_old_merged_nodups.txt.bsorted.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_merged_nodups.bsorted.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/SRR1171591.variants.snp.vqsr.p.vcf.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test.regions2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/test_juicer_shortform.pairs -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.bsorted.ff.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/old_index/merged_nodups.space.chrblock_sorted.subsample3.txt.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples/old_index copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodup.tab.chrblock_sorted.txt.gz.px2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test_old_merged_nodups.txt.bsorted.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test_merged_nodups.bsorted.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/SRR1171591.variants.snp.vqsr.p.vcf.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test.regions2 -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/test_juicer_shortform.pairs -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.bsorted.ff.pairs.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/samples/merged_nodups.space.chrblock_sorted.subsample3.txt.gz -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/samples copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/VERSION.txt -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages copying /build/reproducible-path/python-pairix-0.3.8/.pybuild/cpython3_3.12_pairix/build/pypairix.cpython-312-arm-linux-gnueabihf.so -> /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages running install_egg_info running egg_info creating pypairix.egg-info writing pypairix.egg-info/PKG-INFO writing dependency_links to pypairix.egg-info/dependency_links.txt writing top-level names to pypairix.egg-info/top_level.txt writing manifest file 'pypairix.egg-info/SOURCES.txt' reading manifest file 'pypairix.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'pypairix.egg-info/SOURCES.txt' Copying pypairix.egg-info to /build/reproducible-path/python-pairix-0.3.8/debian/python3-pairix/usr/lib/python3.12/dist-packages/pypairix-0.3.8.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/python-pairix-0.3.8' tar caf samples.tar.xz samples --mode=go=rX,u+rw,a-s --owner=0 --group=0 --numeric-owner --sort=name dh_install find debian/python3-pairix/usr/lib -name samples -type d | xargs rm -rf find debian/*/usr/lib -name VERSION.txt -delete make[1]: Leaving directory '/build/reproducible-path/python-pairix-0.3.8' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-pairix: substitution variable ${shlib:Depends} used, but is not defined dpkg-gencontrol: warning: package python3-pairix: substitution variable ${shlibs:Depends} unused, but is defined dpkg-gencontrol: warning: Depends field of package python3-pairix: substitution variable ${shlib:Depends} used, but is not defined dpkg-gencontrol: warning: package python3-pairix: substitution variable ${shlibs:Depends} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-pairix' in '../python3-pairix_0.3.8-1_armhf.deb'. dpkg-deb: building package 'python3-pairix-dbgsym' in '../python3-pairix-dbgsym_0.3.8-1_armhf.deb'. dpkg-deb: building package 'python-pairix-examples' in '../python-pairix-examples_0.3.8-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pairix_0.3.8-1_armhf.buildinfo dpkg-genchanges --build=binary -O../python-pairix_0.3.8-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/17219 and its subdirectories I: Current time: Thu Oct 10 04:31:33 -12 2024 I: pbuilder-time-stamp: 1728577893 Thu Oct 10 16:42:15 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt32a-armhf-rb.debian.net. Thu Oct 10 16:42:15 UTC 2024 I: Preparing to do remote build '2' on virt32a-armhf-rb.debian.net. Thu Oct 10 17:01:09 UTC 2024 I: Deleting $TMPDIR on virt32a-armhf-rb.debian.net. Thu Oct 10 17:01:11 UTC 2024 I: python-pairix_0.3.8-1_armhf.changes: Format: 1.8 Date: Thu, 22 Aug 2024 23:02:54 +0200 Source: python-pairix Binary: python-pairix-examples python3-pairix python3-pairix-dbgsym Architecture: all armhf Version: 0.3.8-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: python-pairix-examples - 1D/2D indexing and querying with a pair of genomic coordinates (e python3-pairix - 1D/2D indexing and querying with a pair of genomic coordinates Closes: 1075419 Changes: python-pairix (0.3.8-1) unstable; urgency=medium . * New upstream version 0.3.8 * gcc-14.patch: new: fix various incompatible pointer types. (Closes: #1075419) * d/control: declare compliance to standards version 4.7.0. * d/python3-pairix.lintian-overrides: refresh override. * d/control: add myself to uploaders. Checksums-Sha1: 1f68b95165d187fd455d953d513ecaac931a551c 172575708 python-pairix-examples_0.3.8-1_all.deb da0fc4e6ca1e2a9f6513862687c163070a666643 6746 python-pairix_0.3.8-1_armhf.buildinfo 923699309ca375b60bb782714279034b0a58df7e 101488 python3-pairix-dbgsym_0.3.8-1_armhf.deb da495751d4777e52941836a785677b79460ce8d8 35792 python3-pairix_0.3.8-1_armhf.deb Checksums-Sha256: 2c7113e99d2da0e2579fd6a12d83ba41afff2b99998c54f7175d737188addc9b 172575708 python-pairix-examples_0.3.8-1_all.deb fe7a36cfc9842dc9f31040f9e5a1e410afa987ae00ee339429ba76f582a6ef77 6746 python-pairix_0.3.8-1_armhf.buildinfo 686dbd9d8073047a746a76347fa93c088f2346d207d8bd4bbd3c19f64aaad274 101488 python3-pairix-dbgsym_0.3.8-1_armhf.deb 882c2de812b1065ab9de835f9d63b89cf82e07c9b169b38cc060dd0bc5be1fcd 35792 python3-pairix_0.3.8-1_armhf.deb Files: 53e34f193af0dc1ce9ca2f76e7b77c4d 172575708 science optional python-pairix-examples_0.3.8-1_all.deb 0042cad8005da6aa63fd1e90d4e0d731 6746 science optional python-pairix_0.3.8-1_armhf.buildinfo d7fd0f82b4c8833daa1a9f227dcc00dc 101488 debug optional python3-pairix-dbgsym_0.3.8-1_armhf.deb 0f8842e5cf206d5647e2bf2f0a27284e 35792 python optional python3-pairix_0.3.8-1_armhf.deb Thu Oct 10 17:01:13 UTC 2024 I: diffoscope 279 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_18-7738.service Warning: program compiled against libxml 212 using older 209 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.8MhL4xTo/python-pairix_0.3.8-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.8MhL4xTo/python-pairix_0.3.8-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.8MhL4xTo/python-pairix_0.3.8-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.8MhL4xTo/b1/python-pairix_0.3.8-1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.8MhL4xTo/b2/python-pairix_0.3.8-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 2.143s) 2.143s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 1.781s) 1.781s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 2.481s CPU time consumed: 2.482s Thu Oct 10 17:05:20 UTC 2024 I: diffoscope 279 found no differences in the changes files, and a .buildinfo file also exists. Thu Oct 10 17:05:20 UTC 2024 I: python-pairix from trixie built successfully and reproducibly on armhf. Thu Oct 10 17:05:22 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Oct 10 17:05:22 UTC 2024 I: Submitting 8.0K b1/python-pairix_0.3.8-1_armhf.buildinfo.asc Thu Oct 10 17:05:24 UTC 2024 I: Submitting 8.0K b2/python-pairix_0.3.8-1_armhf.buildinfo.asc Thu Oct 10 17:05:29 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Oct 10 17:05:29 UTC 2024 I: Done submitting .buildinfo files. Thu Oct 10 17:05:29 UTC 2024 I: Removing signed python-pairix_0.3.8-1_armhf.buildinfo.asc files: removed './b1/python-pairix_0.3.8-1_armhf.buildinfo.asc' removed './b2/python-pairix_0.3.8-1_armhf.buildinfo.asc'