Thu Nov 14 20:52:20 UTC 2024 I: starting to build python-bcbio-gff/trixie/armhf on jenkins on '2024-11-14 20:51' Thu Nov 14 20:52:20 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_21/5844/console.log Thu Nov 14 20:52:20 UTC 2024 I: Downloading source for trixie/python-bcbio-gff=0.7.1-2 --2024-11-14 20:52:20-- http://deb.debian.org/debian/pool/main/p/python-bcbio-gff/python-bcbio-gff_0.7.1-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2386 (2.3K) [text/prs.lines.tag] Saving to: ‘python-bcbio-gff_0.7.1-2.dsc’ 0K .. 100% 311M=0s 2024-11-14 20:52:20 (311 MB/s) - ‘python-bcbio-gff_0.7.1-2.dsc’ saved [2386/2386] Thu Nov 14 20:52:20 UTC 2024 I: python-bcbio-gff_0.7.1-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-bcbio-gff Binary: python3-bcbio-gff Architecture: all Version: 0.7.1-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/chapmanb/bcbb/tree/master/gff Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-bcbio-gff Vcs-Git: https://salsa.debian.org/med-team/python-bcbio-gff.git Testsuite: autopkgtest, autopkgtest-pkg-python Testsuite-Triggers: python3-all, tar Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, python3-biopython, python3-six, debhelper Package-List: python3-bcbio-gff deb python optional arch=all Checksums-Sha1: 3d1dad12c7097b38106bb16d51a1359c40dea5a1 20102 python-bcbio-gff_0.7.1.orig.tar.gz ac26b08213e8b94b3fb34611c73f2d65296f8507 23860 python-bcbio-gff_0.7.1-2.debian.tar.xz Checksums-Sha256: d1dc3294147b95baced6033f6386a0fed45c43767ef02d1223df5ef497e9cca6 20102 python-bcbio-gff_0.7.1.orig.tar.gz 295a72eb52b9ac39251b03940ad328fe024c95cbc93cf46ec7e59453a3533026 23860 python-bcbio-gff_0.7.1-2.debian.tar.xz Files: 3037d9c40d8ccf904016a1f01a1022bc 20102 python-bcbio-gff_0.7.1.orig.tar.gz 19abf49dfaf9d5986d3dfd95bb09bb93 23860 python-bcbio-gff_0.7.1-2.debian.tar.xz Dgit: ef3fd9c333841aa38ba996c53f99bcd20f4db159 debian archive/debian/0.7.1-2 https://git.dgit.debian.org/python-bcbio-gff -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmcqmAsUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpjPhAAr7gxjAR37jzxyILaNU8VjH5Kq4mh HqFRqR2XzeiXgcO0ZTfyhdB7pKg/KoADylWwC9ibOnUr7VcvLRmdxsYL/glY86+V TSm34WNknLTZRmfbNliz9GklvPR6NIz+RFn+9vKKeHZTfY/C6Nz8DLd8tymrNYG0 FZEKlqK54WWMO/znR+VuL39JlXKi+b/zR9a14yMRt1wGFCaduIFr+88McjOJi2Te c7SLhcpOP176QkXwfuLPpB97+JtNqidaYcOK8hldTlDMywTFI9XaY7zmRvII11gM /OPDw5sLJiA8iD0tJpD5PmClslTYVEq+M11EcCH7HekFSlSq9Kj9efIL5rVQ1G/9 L9GGg+Uo+BsSfL0/ZG1x6qp+IhchUPxhQLVLGXrJAqmyLGE0HWpZyKzgUUiBVN64 A+mpJ0koV/e0iHLN0SC1Mbgg9ys8z/H0jtDzL1EmhJe3mRy32n4o5QKzNCqrNXtS MN2aCBtIsKtOY3TPmIpLInkqcezQI6CuP/xYOIU1ygM6ONtmmMPca2NbjlUQWRqa Qsa+kv4rVnfATI4VOPObOmUHouOoTGd6hdIVKlOn1oagTWaZyjNp5kWw3nSsWYF0 rV+MW7qCl8bxjID5w0efSKWi5XJD6kLF93fFJK13ihWRz3zvHvLQ2gugMKubwEwT vyrvuOhCTrX2dYk= =sugr -----END PGP SIGNATURE----- Thu Nov 14 20:52:20 UTC 2024 I: Checking whether the package is not for us Thu Nov 14 20:52:20 UTC 2024 I: Starting 1st build on remote node cbxi4a-armhf-rb.debian.net. Thu Nov 14 20:52:20 UTC 2024 I: Preparing to do remote build '1' on cbxi4a-armhf-rb.debian.net. Thu Nov 14 21:08:48 UTC 2024 I: Deleting $TMPDIR on cbxi4a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 14 08:52:32 -12 2024 I: pbuilder-time-stamp: 1731617552 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-bcbio-gff_0.7.1-2.dsc] I: copying [./python-bcbio-gff_0.7.1.orig.tar.gz] I: copying [./python-bcbio-gff_0.7.1-2.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Nov 5 22:11:23 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-bcbio-gff_0.7.1-2.dsc: no acceptable signature found dpkg-source: info: extracting python-bcbio-gff in python-bcbio-gff-0.7.1 dpkg-source: info: unpacking python-bcbio-gff_0.7.1.orig.tar.gz dpkg-source: info: unpacking python-bcbio-gff_0.7.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python-syntax-warning.patch dpkg-source: info: applying distutils-deprecation.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/16633/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='7e177dc6b7ea4deeb0b3719a19972ab1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='16633' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.K0lTbLUp/pbuilderrc_h9OZ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.K0lTbLUp/b1 --logfile b1/build.log python-bcbio-gff_0.7.1-2.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux cbxi4a 6.1.0-23-armmp #1 SMP Debian 6.1.99-1 (2024-07-15) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/16633/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, python3-biopython, python3-six, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19692 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-six; however: Package python3-six is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-six{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 118 newly installed, 0 to remove and 0 not upgraded. Need to get 56.5 MB of archives. After unpacking 183 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libpython3.12-minimal armhf 3.12.7-3 [800 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf python3.12-minimal armhf 3.12.7-3 [1808 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.1-1+b1 [22.3 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 12 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3+b1 [71.3 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libnsl2 armhf 1.3.0-3+b3 [35.0 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libreadline8t64 armhf 8.2-5 [146 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libpython3.12-stdlib armhf 3.12.7-3 [1819 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf python3.12 armhf 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf sgml-base all 1.31 [15.4 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-9 [88.8 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-2 [723 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-8 [517 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 45 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.1 [604 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf debhelper all 13.20 [915 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf python3-autocommand all 2.2.2-3 [13.6 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf python3-typeguard all 4.4.1-1 [37.0 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf python3-inflect all 7.3.1-2 [32.4 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf python3-jaraco.context all 6.0.0-1 [7984 B] Get: 59 http://deb.debian.org/debian trixie/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf python3-pkg-resources all 74.1.2-2 [213 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf python3-zipp all 3.21.0-1 [10.6 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf python3-setuptools all 74.1.2-2 [736 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf dh-python all 6.20241024 [109 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf libfontenc1 armhf 1:1.1.8-1+b1 [20.8 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf libpng16-16t64 armhf 1.6.44-2 [263 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [385 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf x11-common all 1:7.7+23.1 [216 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf xfonts-utils armhf 1:7.7+7 [84.2 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 74 http://deb.debian.org/debian trixie/main armhf fontconfig-config armhf 2.15.0-1.1+b1 [318 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf libblas3 armhf 3.12.0-3+b1 [111 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf libfontconfig1 armhf 2.15.0-1.1+b1 [371 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf libpixman-1-0 armhf 0.44.0-3 [164 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf libxau6 armhf 1:1.0.11-1 [19.7 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf libxdmcp6 armhf 1:1.1.2-3+b2 [23.0 kB] Get: 80 http://deb.debian.org/debian trixie/main armhf libxcb1 armhf 1.17.0-2+b1 [140 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf libx11-data all 2:1.8.10-2 [337 kB] Get: 82 http://deb.debian.org/debian trixie/main armhf libx11-6 armhf 2:1.8.10-2 [750 kB] Get: 83 http://deb.debian.org/debian trixie/main armhf libxcb-render0 armhf 1.17.0-2+b1 [114 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf libxcb-shm0 armhf 1.17.0-2+b1 [105 kB] Get: 85 http://deb.debian.org/debian trixie/main armhf libxext6 armhf 2:1.3.4-1+b2 [45.2 kB] Get: 86 http://deb.debian.org/debian trixie/main armhf libxrender1 armhf 1:0.9.10-1.1+b2 [25.0 kB] Get: 87 http://deb.debian.org/debian trixie/main armhf libcairo2 armhf 1.18.2-2 [443 kB] Get: 88 http://deb.debian.org/debian trixie/main armhf libdeflate0 armhf 1.22-1 [36.3 kB] Get: 89 http://deb.debian.org/debian trixie/main armhf libfribidi0 armhf 1.0.15-1 [70.0 kB] Get: 90 http://deb.debian.org/debian trixie/main armhf libgfortran5 armhf 14.2.0-8 [263 kB] Get: 91 http://deb.debian.org/debian trixie/main armhf libglib2.0-0t64 armhf 2.82.2-2 [1326 kB] Get: 92 http://deb.debian.org/debian trixie/main armhf libgraphite2-3 armhf 1.3.14-2+b1 [63.1 kB] Get: 93 http://deb.debian.org/debian trixie/main armhf libharfbuzz0b armhf 10.0.1-1 [418 kB] Get: 94 http://deb.debian.org/debian trixie/main armhf libimagequant0 armhf 2.18.0-1+b2 [30.5 kB] Get: 95 http://deb.debian.org/debian trixie/main armhf libjbig0 armhf 2.1-6.1+b2 [27.3 kB] Get: 96 http://deb.debian.org/debian trixie/main armhf libjpeg62-turbo armhf 1:2.1.5-3+b1 [145 kB] Get: 97 http://deb.debian.org/debian trixie/main armhf liblapack3 armhf 3.12.0-3+b1 [1828 kB] Get: 98 http://deb.debian.org/debian trixie/main armhf liblcms2-2 armhf 2.16-2 [131 kB] Get: 99 http://deb.debian.org/debian trixie/main armhf liblerc4 armhf 4.0.0+ds-5 [146 kB] Get: 100 http://deb.debian.org/debian trixie/main armhf libopenjp2-7 armhf 2.5.0-2+b4 [179 kB] Get: 101 http://deb.debian.org/debian trixie/main armhf libraqm0 armhf 0.10.1-1+b2 [11.8 kB] Get: 102 http://deb.debian.org/debian trixie/main armhf libsharpyuv0 armhf 1.4.0-0.1+b1 [111 kB] Get: 103 http://deb.debian.org/debian trixie/main armhf libwebp7 armhf 1.4.0-0.1+b1 [266 kB] Get: 104 http://deb.debian.org/debian trixie/main armhf libtiff6 armhf 4.5.1+git230720-5 [302 kB] Get: 105 http://deb.debian.org/debian trixie/main armhf libwebpdemux2 armhf 1.4.0-0.1+b1 [110 kB] Get: 106 http://deb.debian.org/debian trixie/main armhf libwebpmux3 armhf 1.4.0-0.1+b1 [120 kB] Get: 107 http://deb.debian.org/debian trixie/main armhf python3-all armhf 3.12.6-1 [1040 B] Get: 108 http://deb.debian.org/debian trixie/main armhf python3-numpy armhf 1:1.26.4+ds-11 [3340 kB] Get: 109 http://deb.debian.org/debian trixie/main armhf python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 110 http://deb.debian.org/debian trixie/main armhf python3-pil armhf 10.4.0-1+b1 [478 kB] Get: 111 http://deb.debian.org/debian trixie/main armhf python3-cairo armhf 1.26.1-2+b1 [120 kB] Get: 112 http://deb.debian.org/debian trixie/main armhf python3-freetype all 2.5.1-1 [89.3 kB] Get: 113 http://deb.debian.org/debian trixie/main armhf python3-rlpycairo all 0.3.0-3 [9904 B] Get: 114 http://deb.debian.org/debian trixie/main armhf python3-reportlab all 4.2.5-1 [1117 kB] Get: 115 http://deb.debian.org/debian trixie/main armhf xml-core all 0.19 [20.1 kB] Get: 116 http://deb.debian.org/debian trixie/main armhf w3c-sgml-lib all 1.3-3 [273 kB] Get: 117 http://deb.debian.org/debian trixie/main armhf python3-biopython armhf 1.84+dfsg-4 [1619 kB] Get: 118 http://deb.debian.org/debian trixie/main armhf python3-six all 1.16.0-7 [16.4 kB] Fetched 56.5 MB in 7s (7786 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19692 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.7-3) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.4-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_armhf.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:armhf (3.12.7-3) ... Setting up libexpat1:armhf (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20012 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_armhf.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../04-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_armhf.deb ... Unpacking libcom-err2:armhf (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../06-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../07-libkeyutils1_1.6.3-4_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-4) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../08-libkrb5-3_1.21.3-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:armhf. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:armhf. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_armhf.deb ... Unpacking libnsl2:armhf (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../14-libreadline8t64_8.2-5_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:armhf. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_armhf.deb ... Unpacking libpython3.12-stdlib:armhf (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_armhf.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21074 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.6-1_armhf.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../01-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-2_armhf.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-5_armhf.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.2-9_armhf.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../10-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... 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Selecting previously unselected package libxml2:armhf. Preparing to unpack .../26-libxml2_2.12.7+dfsg+really2.9.14-0.1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.22.5-2_armhf.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../31-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../32-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../33-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../34-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../35-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../36-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../37-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../38-python3-pkg-resources_74.1.2-2_all.deb ... Unpacking python3-pkg-resources (74.1.2-2) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../39-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../40-python3-setuptools_74.1.2-2_all.deb ... Unpacking python3-setuptools (74.1.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../41-dh-python_6.20241024_all.deb ... Unpacking dh-python (6.20241024) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../42-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../43-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package libfontenc1:armhf. Preparing to unpack .../44-libfontenc1_1%3a1.1.8-1+b1_armhf.deb ... Unpacking libfontenc1:armhf (1:1.1.8-1+b1) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../45-libbrotli1_1.1.0-2+b6_armhf.deb ... Unpacking libbrotli1:armhf (1.1.0-2+b6) ... Selecting previously unselected package libpng16-16t64:armhf. Preparing to unpack .../46-libpng16-16t64_1.6.44-2_armhf.deb ... Unpacking libpng16-16t64:armhf (1.6.44-2) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../47-libfreetype6_2.13.3+dfsg-1_armhf.deb ... Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../48-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../49-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../50-xfonts-utils_1%3a7.7+7_armhf.deb ... Unpacking xfonts-utils (1:7.7+7) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../51-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../52-fontconfig-config_2.15.0-1.1+b1_armhf.deb ... Unpacking fontconfig-config (2.15.0-1.1+b1) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../53-libblas3_3.12.0-3+b1_armhf.deb ... Unpacking libblas3:armhf (3.12.0-3+b1) ... Selecting previously unselected package libfontconfig1:armhf. Preparing to unpack .../54-libfontconfig1_2.15.0-1.1+b1_armhf.deb ... Unpacking libfontconfig1:armhf (2.15.0-1.1+b1) ... Selecting previously unselected package libpixman-1-0:armhf. Preparing to unpack .../55-libpixman-1-0_0.44.0-3_armhf.deb ... Unpacking libpixman-1-0:armhf (0.44.0-3) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../56-libxau6_1%3a1.0.11-1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../57-libxdmcp6_1%3a1.1.2-3+b2_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3+b2) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../58-libxcb1_1.17.0-2+b1_armhf.deb ... Unpacking libxcb1:armhf (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../59-libx11-data_2%3a1.8.10-2_all.deb ... Unpacking libx11-data (2:1.8.10-2) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../60-libx11-6_2%3a1.8.10-2_armhf.deb ... 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Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:armhf (1.1.0-2+b6) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:armhf (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libxcb-shm0:armhf (1.17.0-2+b1) ... Setting up libcom-err2:armhf (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:armhf (2.1-6.1+b2) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up libkrb5support0:armhf (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Nov 14 20:55:50 UTC 2024. Universal Time is now: Thu Nov 14 20:55:50 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:armhf (1:1.1.8-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:armhf (2.82.2-2) ... No schema files found: doing nothing. Setting up libblas3:armhf (3.12.0-3+b1) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libjpeg62-turbo:armhf (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:armhf (1.0.15-1) ... Setting up libimagequant0:armhf (2.18.0-1+b2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:armhf (1.6.44-2) ... Setting up autopoint (0.22.5-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:armhf (1.21.3-3) ... Setting up libgfortran5:armhf (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:armhf (1.4.0-0.1+b1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... 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Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libwebpdemux2:armhf (1.4.0-0.1+b1) ... Setting up libxext6:armhf (2:1.3.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:armhf (1.21.3-3) ... Setting up libreadline8t64:armhf (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:armhf (10.0.1-1) ... Setting up libfontconfig1:armhf (2.15.0-1.1+b1) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:armhf (1.18.2-2) ... Setting up libraqm0:armhf (0.10.1-1+b2) ... Setting up libnsl2:armhf (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:armhf (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libpython3-stdlib:armhf (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-six (1.16.0-7) ... Setting up python3-pil:armhf (10.4.0-1+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-cairo (1.26.1-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-11) ... Setting up python3-reportlab (4.2.5-1) ... Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-bcbio-gff-0.7.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-bcbio-gff_0.7.1-2_source.changes dpkg-buildpackage: info: source package python-bcbio-gff dpkg-buildpackage: info: source version 0.7.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio copying BCBio/__init__.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio creating /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF copying BCBio/GFF/_utils.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF copying BCBio/GFF/GFFOutput.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF copying BCBio/GFF/__init__.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF copying BCBio/GFF/GFFParser.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build; python3.12 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-bcbio-gff/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr creating /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib creating /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12 creating /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio creating /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/__pycache__ copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/__pycache__ copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/__init__.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio creating /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF/_utils.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF creating /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF/__pycache__ copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF/__pycache__/GFFOutput.cpython-312.pyc -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF/__pycache__ copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF/__pycache__ copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF/__pycache__/GFFParser.cpython-312.pyc -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF/__pycache__ copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF/GFFOutput.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF/__init__.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF copying /build/reproducible-path/python-bcbio-gff-0.7.1/.pybuild/cpython3_3.12_bcbio-gff/build/BCBio/GFF/GFFParser.py -> /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF byte-compiling /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF/_utils.py to _utils.cpython-312.pyc byte-compiling /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF/GFFOutput.py to GFFOutput.cpython-312.pyc byte-compiling /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/BCBio/GFF/GFFParser.py to GFFParser.cpython-312.pyc running install_egg_info running egg_info creating bcbio_gff.egg-info writing bcbio_gff.egg-info/PKG-INFO writing dependency_links to bcbio_gff.egg-info/dependency_links.txt writing requirements to bcbio_gff.egg-info/requires.txt writing top-level names to bcbio_gff.egg-info/top_level.txt writing manifest file 'bcbio_gff.egg-info/SOURCES.txt' reading manifest file 'bcbio_gff.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'bcbio_gff.egg-info/SOURCES.txt' Copying bcbio_gff.egg-info to /build/reproducible-path/python-bcbio-gff-0.7.1/debian/python3-bcbio-gff/usr/lib/python3.12/dist-packages/bcbio_gff-0.7.1.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/python-bcbio-gff-0.7.1' dh_install find debian -name __pycache__ -type d | xargs rm -rf make[1]: Leaving directory '/build/reproducible-path/python-bcbio-gff-0.7.1' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-bcbio-gff' in '../python3-bcbio-gff_0.7.1-2_all.deb'. dpkg-genbuildinfo --build=binary -O../python-bcbio-gff_0.7.1-2_armhf.buildinfo dpkg-genchanges --build=binary -O../python-bcbio-gff_0.7.1-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/16633 and its subdirectories I: Current time: Thu Nov 14 09:08:42 -12 2024 I: pbuilder-time-stamp: 1731618522 Thu Nov 14 21:08:50 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ff64a-armhf-rb.debian.net. Thu Nov 14 21:08:50 UTC 2024 I: Preparing to do remote build '2' on ff64a-armhf-rb.debian.net. Thu Nov 14 21:16:10 UTC 2024 I: Deleting $TMPDIR on ff64a-armhf-rb.debian.net. Thu Nov 14 21:16:12 UTC 2024 I: python-bcbio-gff_0.7.1-2_armhf.changes: Format: 1.8 Date: Tue, 05 Nov 2024 22:59:55 +0100 Source: python-bcbio-gff Binary: python3-bcbio-gff Architecture: all Version: 0.7.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: python3-bcbio-gff - Python3 library to read and write Generic Feature Format Closes: 1085892 Changes: python-bcbio-gff (0.7.1-2) unstable; urgency=medium . * python-syntax-warning.patch: new: fix SyntaxWarning. (Closes: #1085892) * d/control: declare compliance to standards version 4.7.0. * distutils-deprecation.patch: new: remove use of deprecated distutils. Checksums-Sha1: 82bfbfa975846b881a2ce0b80041854fbb700091 7324 python-bcbio-gff_0.7.1-2_armhf.buildinfo a8ecec8b2b234a1b2d9d13eddd931357845afd1c 33692 python3-bcbio-gff_0.7.1-2_all.deb Checksums-Sha256: 8958e0c7bbf0fc4e0741f885c996ec86546bdee5804eebff40ce1154d6bd5f7e 7324 python-bcbio-gff_0.7.1-2_armhf.buildinfo c026f0652f44043b065d2a39fcda88cd22a574aa42411b03645242c36326a53d 33692 python3-bcbio-gff_0.7.1-2_all.deb Files: 188660ccd461bf7c36781226f2dec5ba 7324 science optional python-bcbio-gff_0.7.1-2_armhf.buildinfo 153e159475b352f66cdc966deb05a945 33692 python optional python3-bcbio-gff_0.7.1-2_all.deb Thu Nov 14 21:16:13 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_21-5844.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.K0lTbLUp/python-bcbio-gff_0.7.1-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.K0lTbLUp/python-bcbio-gff_0.7.1-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.K0lTbLUp/python-bcbio-gff_0.7.1-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.K0lTbLUp/b1/python-bcbio-gff_0.7.1-2_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.K0lTbLUp/b2/python-bcbio-gff_0.7.1-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.333s) 0.333s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.014s) 0.014s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 631ms CPU time consumed: 627ms Thu Nov 14 21:16:14 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Thu Nov 14 21:16:14 UTC 2024 I: python-bcbio-gff from trixie built successfully and reproducibly on armhf. Thu Nov 14 21:16:15 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Nov 14 21:16:15 UTC 2024 I: Submitting 12K b1/python-bcbio-gff_0.7.1-2_armhf.buildinfo.asc Thu Nov 14 21:16:17 UTC 2024 I: Submitting 12K b2/python-bcbio-gff_0.7.1-2_armhf.buildinfo.asc Thu Nov 14 21:16:18 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Nov 14 21:16:18 UTC 2024 I: Done submitting .buildinfo files. Thu Nov 14 21:16:18 UTC 2024 I: Removing signed python-bcbio-gff_0.7.1-2_armhf.buildinfo.asc files: removed './b1/python-bcbio-gff_0.7.1-2_armhf.buildinfo.asc' removed './b2/python-bcbio-gff_0.7.1-2_armhf.buildinfo.asc'