Sun Jun 16 02:54:56 UTC 2024 I: starting to build plip/trixie/armhf on jenkins on '2024-06-16 02:54' Sun Jun 16 02:54:56 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_34/8269/console.log Sun Jun 16 02:54:56 UTC 2024 I: Downloading source for trixie/plip=2.3.0+dfsg-2 --2024-06-16 02:54:56-- http://deb.debian.org/debian/pool/main/p/plip/plip_2.3.0%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2086 (2.0K) [text/prs.lines.tag] Saving to: ‘plip_2.3.0+dfsg-2.dsc’ 0K .. 100% 295M=0s 2024-06-16 02:54:56 (295 MB/s) - ‘plip_2.3.0+dfsg-2.dsc’ saved [2086/2086] Sun Jun 16 02:54:56 UTC 2024 I: plip_2.3.0+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: plip Binary: plip Architecture: all Version: 2.3.0+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Alexandre Mestiashvili Homepage: https://projects.biotec.tu-dresden.de/plip-web/plip/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/plip Vcs-Git: https://salsa.debian.org/med-team/plip.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, python3-all, python3-lxml, python3-numpy, python3-openbabel, python3-setuptools Package-List: plip deb python optional arch=all Checksums-Sha1: a2c59f7bd68ff7b482cb229a3b76f715d3d505bd 79816 plip_2.3.0+dfsg.orig.tar.xz 912d416f3e0e50bf2fea5e170ed1820b5a8f75f6 5772 plip_2.3.0+dfsg-2.debian.tar.xz Checksums-Sha256: 296b22804ce2fb2148da8f43615311d43597bf986c84dc9ab554aedd06bd8c9e 79816 plip_2.3.0+dfsg.orig.tar.xz fd9e64aa4f0c48391f4674d6a2575057c0a4f80c16873b4d9dbf13f48d26be01 5772 plip_2.3.0+dfsg-2.debian.tar.xz Files: 0bb89efad0061dc91a8241e1c12d3960 79816 plip_2.3.0+dfsg.orig.tar.xz 11071238891fdc3af5e41990210ea62b 5772 plip_2.3.0+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWWm8URHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtE9KQ//XDzRnIqtHWscDKd9RuCM7DO9ykgHQCLE PEzrC+2IvB3OIxSEzYYscTNlKRhLO6M0yBKap7gn9jt1cTiWsDIXtkOVNbVzL/Sq hECb6Vvap12BDkYuKg9Z7rnOqUtvbzOqsZRNEycZ12zHhRtHH45MC1aZxcofNCyt oL/p2vN7/gL2xYu43Xb+e77S0G13YQgWM2dPmvJx44QuSJYpTohjIJv2mQwklI9G AvRha6V6IL6/Yz5DDatTmLbsJF0TW1jOMMVkhZj8A6VWVlOUb2FqQAAUjxCsNBvw 6hpnJpU1L6cy2JpMGJd3OP0TgIGDRnSVPNfy+2oLgYOqjmKV1VY9PVxvol4OH0n4 LwhzUgVojo+laO8kEsPfqQ8Okmtul22Lsuss2fbIlzN8a5Va3muPz8hvGpLcv1Dr euva6jmGDRGeaPVnHClFC04N8FD0dm5iN1hlaJ+EV0Inis4IkmD9Aq8i3QoKgWBi nIobsbTYXzRG4bVNf0agm6iMxyyXCqduw9e74+cHet5wMUeZBnkNFWDVCRKDGnUp HYTXJhfA9rmio3xi7QhcAJAdzGmzgcAO1vB9Ffv9S7ny/kZmbriXR+7EMDRaDPAB sfdkds/Qfsm2H61r3fxGA33g6TP3X7qdxlAj7qAlEkzcarQJW3mbiDyxmx7TdKRR 2kBTHkSlrNc= =OBd9 -----END PGP SIGNATURE----- Sun Jun 16 02:54:56 UTC 2024 I: Checking whether the package is not for us Sun Jun 16 02:54:56 UTC 2024 I: Starting 1st build on remote node virt32z-armhf-rb.debian.net. Sun Jun 16 02:54:56 UTC 2024 I: Preparing to do remote build '1' on virt32z-armhf-rb.debian.net. Sun Jun 16 02:56:45 UTC 2024 I: Deleting $TMPDIR on virt32z-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Jun 15 14:55:03 -12 2024 I: pbuilder-time-stamp: 1718506503 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [plip_2.3.0+dfsg-2.dsc] I: copying [./plip_2.3.0+dfsg.orig.tar.xz] I: copying [./plip_2.3.0+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Jan 4 11:51:33 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./plip_2.3.0+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting plip in plip-2.3.0+dfsg dpkg-source: info: unpacking plip_2.3.0+dfsg.orig.tar.xz dpkg-source: info: unpacking plip_2.3.0+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying revert_imagemagick_changes.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/10346/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='09dfaf05bd8e44b6b08f9f5c96466e01' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='10346' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.huBDt7dx/pbuilderrc_57Ys --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.huBDt7dx/b1 --logfile b1/build.log plip_2.3.0+dfsg-2.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32z 6.1.0-21-armmp-lpae #1 SMP Debian 6.1.90-1 (2024-05-03) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 13 11:24 /bin -> usr/bin I: user script /srv/workspace/pbuilder/10346/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, help2man, python3-all, python3-lxml, python3-numpy, python3-openbabel, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19443 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-lxml; however: Package python3-lxml is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-openbabel; however: Package python3-openbabel is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgfortran5{a} libicu72{a} libinchi1{a} liblapack3{a} liblocale-gettext-perl{a} libmaeparser1{a} libmagic-mgc{a} libmagic1t64{a} libopenbabel7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} libxslt1.1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-lxml{a} python3-minimal{a} python3-numpy{a} python3-openbabel{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-bs4 python3-cssselect python3-html5lib wget 0 packages upgraded, 84 newly installed, 0 to remove and 0 not upgraded. Need to get 49.5 MB of archives. After unpacking 182 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf liblocale-gettext-perl armhf 1.07-7 [14.4 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libpython3.11-minimal armhf 3.11.9-1 [805 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf python3.11-minimal armhf 3.11.9-1 [1600 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.11.8-1 [26.3 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf tzdata all 2024a-4 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-4 [69.3 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libreadline8t64 armhf 8.2-4 [145 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libpython3.11-stdlib armhf 3.11.9-1 [1704 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf python3.11 armhf 3.11.9-1 [602 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.11.8-1 [9332 B] Get: 14 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.11.8-1 [27.4 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf libpython3.12-minimal armhf 3.12.3-1 [795 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf python3.12-minimal armhf 3.12.3-1 [1783 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-4 [1090 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.1-8.1 [87.7 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.1-1 [1375 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 38 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b3 [598 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf python3-pkg-resources all 68.1.2-2 [241 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf python3-lib2to3 all 3.12.3-3.1 [77.7 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf python3-distutils all 3.12.3-3.1 [131 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf python3-setuptools all 68.1.2-2 [468 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf dh-python all 6.20240422 [107 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf fontconfig-config armhf 2.15.0-1.1 [317 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf help2man armhf 1.49.3 [198 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libblas3 armhf 3.12.0-3 [108 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf libbsd0 armhf 0.12.2-1 [127 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf libpng16-16t64 armhf 1.6.43-5 [262 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf libfreetype6 armhf 2.13.2+dfsg-1+b4 [372 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf libfontconfig1 armhf 2.15.0-1.1 [370 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libpixman-1-0 armhf 0.42.2-1+b1 [476 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libxau6 armhf 1:1.0.9-1+b1 [17.4 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf libxdmcp6 armhf 1:1.1.2-3+b1 [23.0 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libxcb1 armhf 1.17.0-2 [140 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf libx11-data all 2:1.8.7-1 [328 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf libx11-6 armhf 2:1.8.7-1+b1 [739 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf libxcb-render0 armhf 1.17.0-2 [114 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf libxcb-shm0 armhf 1.17.0-2 [105 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf libxrender1 armhf 1:0.9.10-1.1+b1 [24.9 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf libcairo2 armhf 1.18.0-3+b1 [442 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf libgfortran5 armhf 14-20240330-1 [264 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf libinchi1 armhf 1.03+dfsg-4 [352 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf liblapack3 armhf 3.12.0-3 [1803 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf libmaeparser1 armhf 1.3.1-1+b1 [81.4 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf libopenbabel7 armhf 3.1.1+dfsg-9+b8 [2896 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf libpython3.11t64 armhf 3.11.9-1 [1674 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf libpython3.12-stdlib armhf 3.12.3-1 [1808 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf libxslt1.1 armhf 1.1.35-1+b1 [212 kB] Get: 80 http://deb.debian.org/debian trixie/main armhf python3.12 armhf 3.12.3-1 [659 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf python3-all armhf 3.11.8-1 [1056 B] Get: 82 http://deb.debian.org/debian trixie/main armhf python3-lxml armhf 5.1.0-1 [1878 kB] Get: 83 http://deb.debian.org/debian trixie/main armhf python3-numpy armhf 1:1.26.4+ds-10 [4132 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf python3-openbabel armhf 3.1.1+dfsg-9+b8 [524 kB] Fetched 49.5 MB in 1s (87.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19443 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-7_armhf.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package libpython3.11-minimal:armhf. Preparing to unpack .../libpython3.11-minimal_3.11.9-1_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.9-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.2-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_armhf.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:armhf (3.11.9-1) ... Setting up libexpat1:armhf (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:armhf. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_armhf.deb ... Unpacking libpython3.11-stdlib:armhf (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_armhf.deb ... Unpacking python3.11 (3.11.9-1) ... 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Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:armhf (1.1.0-2+b3) ... Setting up libmagic1t64:armhf (1:5.45-3) ... Setting up libpython3.12-minimal:armhf (3.12.3-1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:armhf (0.191-1+b1) ... Setting up libmaeparser1:armhf (1.3.1-1+b1) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Jun 16 02:55:52 UTC 2024. Universal Time is now: Sun Jun 16 02:55:52 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libx11-data (2:1.8.7-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:armhf (1.6.43-5) ... Setting up autopoint (0.21-14) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libgfortran5:armhf (14-20240330-1) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up netbase (6.4) ... Setting up libbsd0:armhf (0.12.2-1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b3) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up libinchi1 (1.03+dfsg-4) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up python3.12-minimal (3.12.3-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3+b1) ... Setting up liblapack3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libxcb1:armhf (1.17.0-2) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:armhf (1.17.0-2) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libxcb-shm0:armhf (1.17.0-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:armhf (2.13.2+dfsg-1+b4) ... Setting up libreadline8t64:armhf (8.2-4) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-4) ... Setting up libxslt1.1:armhf (1.1.35-1+b1) ... Setting up libx11-6:armhf (2:1.8.7-1+b1) ... Setting up libfontconfig1:armhf (2.15.0-1.1) ... Setting up libpython3.12-stdlib:armhf (3.12.3-1) ... Setting up libxrender1:armhf (1:0.9.10-1.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:armhf (3.11.9-1) ... Setting up python3.12 (3.12.3-1) ... Setting up libpython3.11t64:armhf (3.11.9-1) ... Setting up libxext6:armhf (2:1.3.4-1+b1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:armhf (1.18.0-3+b1) ... Setting up libpython3-stdlib:armhf (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up libopenbabel7 (3.1.1+dfsg-9+b8) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up python3-lxml:armhf (5.1.0-1) ... Setting up python3-lib2to3 (3.12.3-3.1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-3.1) ... python3.12: can't get files for byte-compilation Setting up python3-setuptools (68.1.2-2) ... Setting up python3-openbabel (3.1.1+dfsg-9+b8) ... Setting up python3-all (3.11.8-1) ... Setting up python3-numpy (1:1.26.4+ds-10) ... Setting up dh-python (6.20240422) ... Processing triggers for libc-bin (2.38-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/plip-2.3.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../plip_2.3.0+dfsg-2_source.changes dpkg-buildpackage: info: source package plip dpkg-buildpackage: info: source version 2.3.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p "3.12 3.11" I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running clean removing '/build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running clean removing '/build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/plip.substvars debian/files rm -fr -- debian/plip/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p "3.12 3.11" I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running config I: pybuild base:311: python3.11 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running config dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p "3.12 3.11" I: pybuild base:311: /usr/bin/python3.12 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running build running build_py creating /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip copying plip/plipcmd.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip copying plip/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip creating /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic copying plip/basic/logger.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic copying plip/basic/remote.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic copying plip/basic/supplemental.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic copying plip/basic/config.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic copying plip/basic/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic copying plip/basic/parallel.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic creating /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test copying plip/test/test_xml_writer.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test copying plip/test/test_xml_parser.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test copying plip/test/test_water_bridges.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test copying plip/test/test_intra.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test copying plip/test/test_literature_validated.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test copying plip/test/test_visualization.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test copying plip/test/test_pi_stacking.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test copying plip/test/test_hydrogen_bonds.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test copying plip/test/test_structure_processing.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test copying plip/test/test_salt_bridges.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test copying plip/test/test_remote_services.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test copying plip/test/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test copying plip/test/test_command_line.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test copying plip/test/test_metal_coordination.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test copying plip/test/test_basic_functions.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test creating /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/structure copying plip/structure/preparation.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/structure copying plip/structure/detection.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/structure copying plip/structure/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/structure creating /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/visualization copying plip/visualization/visualize.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/visualization copying plip/visualization/pymol.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/visualization copying plip/visualization/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/visualization copying plip/visualization/chimera.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/visualization creating /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/exchange copying plip/exchange/report.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/exchange copying plip/exchange/webservices.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/exchange copying plip/exchange/xml.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/exchange copying plip/exchange/json.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/exchange copying plip/exchange/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/exchange running build_scripts creating build creating build/scripts-3.12 copying and adjusting plip/plipcmd.py -> build/scripts-3.12 changing mode of build/scripts-3.12/plipcmd.py from 644 to 755 I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running build running build_py creating /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip copying plip/plipcmd.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip copying plip/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip creating /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/basic copying plip/basic/logger.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/basic copying plip/basic/remote.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/basic copying plip/basic/supplemental.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/basic copying plip/basic/config.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/basic copying plip/basic/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/basic copying plip/basic/parallel.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/basic creating /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test copying plip/test/test_xml_writer.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test copying plip/test/test_xml_parser.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test copying plip/test/test_water_bridges.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test copying plip/test/test_intra.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test copying plip/test/test_literature_validated.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test copying plip/test/test_visualization.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test copying plip/test/test_pi_stacking.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test copying plip/test/test_hydrogen_bonds.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test copying plip/test/test_structure_processing.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test copying plip/test/test_salt_bridges.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test copying plip/test/test_remote_services.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test copying plip/test/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test copying plip/test/test_command_line.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test copying plip/test/test_metal_coordination.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test copying plip/test/test_basic_functions.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test creating /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/structure copying plip/structure/preparation.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/structure copying plip/structure/detection.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/structure copying plip/structure/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/structure creating /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/visualization copying plip/visualization/visualize.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/visualization copying plip/visualization/pymol.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/visualization copying plip/visualization/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/visualization copying plip/visualization/chimera.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/visualization creating /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/exchange copying plip/exchange/report.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/exchange copying plip/exchange/webservices.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/exchange copying plip/exchange/xml.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/exchange copying plip/exchange/json.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/exchange copying plip/exchange/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/exchange running build_scripts creating build/scripts-3.11 copying and adjusting plip/plipcmd.py -> build/scripts-3.11 changing mode of build/scripts-3.11/plipcmd.py from 644 to 755 debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/plip-2.3.0+dfsg' # skip all other tests since they require exluded pdb files export PYTHONPATH=/build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/; \ debian/tests/xml-parser make[1]: Leaving directory '/build/reproducible-path/plip-2.3.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/plip.substvars rm -fr -- debian/.debhelper/generated/plip/ debian/plip/ debian/tmp/ debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/plip-2.3.0+dfsg' dh_auto_install install -m0755 -d /build/reproducible-path/plip-2.3.0\+dfsg/debian/plip pybuild --install -i python{version} -p "3.12 3.11" --dest-dir /build/reproducible-path/plip-2.3.0\+dfsg/debian/plip I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/plip-2.3.0+dfsg/debian/plip /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_scripts running install_lib creating /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr creating /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib creating /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12 creating /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages creating /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip creating /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic/logger.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic/remote.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic/supplemental.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic/config.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/basic/parallel.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic creating /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_xml_writer.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_xml_parser.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_water_bridges.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_intra.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_literature_validated.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_visualization.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_pi_stacking.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_hydrogen_bonds.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_structure_processing.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_salt_bridges.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_remote_services.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_command_line.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_metal_coordination.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/test/test_basic_functions.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test creating /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/structure copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/structure/preparation.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/structure copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/structure/detection.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/structure copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/structure/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/structure creating /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/visualization copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/visualization/visualize.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/visualization copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/visualization/pymol.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/visualization copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/visualization/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/visualization copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/visualization/chimera.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/visualization copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/plipcmd.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip creating /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/exchange copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/exchange/report.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/exchange copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/exchange/webservices.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/exchange copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/exchange/xml.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/exchange copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/exchange/json.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/exchange copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.12_plip/build/plip/exchange/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/exchange byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic/logger.py to logger.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic/remote.py to remote.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic/supplemental.py to supplemental.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic/config.py to config.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/basic/parallel.py to parallel.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_xml_writer.py to test_xml_writer.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_xml_parser.py to test_xml_parser.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_water_bridges.py to test_water_bridges.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_intra.py to test_intra.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_literature_validated.py to test_literature_validated.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_visualization.py to test_visualization.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_pi_stacking.py to test_pi_stacking.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_hydrogen_bonds.py to test_hydrogen_bonds.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_structure_processing.py to test_structure_processing.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_salt_bridges.py to test_salt_bridges.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_remote_services.py to test_remote_services.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_command_line.py to test_command_line.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_metal_coordination.py to test_metal_coordination.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/test/test_basic_functions.py to test_basic_functions.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/structure/preparation.py to preparation.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/structure/detection.py to detection.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/structure/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/visualization/visualize.py to visualize.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/visualization/pymol.py to pymol.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/visualization/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/visualization/chimera.py to chimera.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/plipcmd.py to plipcmd.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/exchange/report.py to report.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/exchange/webservices.py to webservices.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/exchange/xml.py to xml.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/exchange/json.py to json.cpython-312.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip/exchange/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating plip.egg-info writing plip.egg-info/PKG-INFO writing dependency_links to plip.egg-info/dependency_links.txt writing entry points to plip.egg-info/entry_points.txt writing requirements to plip.egg-info/requires.txt writing top-level names to plip.egg-info/top_level.txt writing manifest file 'plip.egg-info/SOURCES.txt' reading manifest file 'plip.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'plip.egg-info/SOURCES.txt' Copying plip.egg-info to /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.12/dist-packages/plip-2.3.0.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/bin copying build/scripts-3.12/plipcmd.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/bin changing mode of /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/bin/plipcmd.py to 755 Installing plip script to /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/bin I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/plip-2.3.0+dfsg/debian/plip /usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_scripts running install_lib creating /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11 creating /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages creating /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip creating /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/basic copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/basic/logger.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/basic copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/basic/remote.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/basic copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/basic/supplemental.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/basic copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/basic/config.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/basic copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/basic/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/basic copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/basic/parallel.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/basic creating /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test/test_xml_writer.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test/test_xml_parser.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test/test_water_bridges.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test/test_intra.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test/test_literature_validated.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test/test_visualization.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test/test_pi_stacking.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test/test_hydrogen_bonds.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test/test_structure_processing.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test/test_salt_bridges.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test/test_remote_services.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test/test_command_line.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test/test_metal_coordination.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/test/test_basic_functions.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test creating /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/structure copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/structure/preparation.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/structure copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/structure/detection.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/structure copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/structure/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/structure creating /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/visualization copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/visualization/visualize.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/visualization copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/visualization/pymol.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/visualization copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/visualization/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/visualization copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/visualization/chimera.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/visualization copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/plipcmd.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip creating /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/exchange copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/exchange/report.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/exchange copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/exchange/webservices.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/exchange copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/exchange/xml.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/exchange copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/exchange/json.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/exchange copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/exchange/__init__.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/exchange creating /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/exchange/__pycache__ copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/exchange/__pycache__/xml.cpython-311.pyc -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/exchange/__pycache__ copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/exchange/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/exchange/__pycache__ creating /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/__pycache__ copying /build/reproducible-path/plip-2.3.0+dfsg/.pybuild/cpython3_3.11_plip/build/plip/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/__pycache__ byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/basic/logger.py to logger.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/basic/remote.py to remote.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/basic/supplemental.py to supplemental.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/basic/config.py to config.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/basic/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/basic/parallel.py to parallel.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test/test_xml_writer.py to test_xml_writer.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test/test_xml_parser.py to test_xml_parser.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test/test_water_bridges.py to test_water_bridges.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test/test_intra.py to test_intra.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test/test_literature_validated.py to test_literature_validated.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test/test_visualization.py to test_visualization.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test/test_pi_stacking.py to test_pi_stacking.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test/test_hydrogen_bonds.py to test_hydrogen_bonds.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test/test_structure_processing.py to test_structure_processing.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test/test_salt_bridges.py to test_salt_bridges.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test/test_remote_services.py to test_remote_services.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test/test_command_line.py to test_command_line.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test/test_metal_coordination.py to test_metal_coordination.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/test/test_basic_functions.py to test_basic_functions.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/structure/preparation.py to preparation.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/structure/detection.py to detection.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/structure/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/visualization/visualize.py to visualize.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/visualization/pymol.py to pymol.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/visualization/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/visualization/chimera.py to chimera.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/plipcmd.py to plipcmd.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/exchange/report.py to report.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/exchange/webservices.py to webservices.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/exchange/xml.py to xml.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/exchange/json.py to json.cpython-311.pyc byte-compiling /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip/exchange/__init__.py to __init__.cpython-311.pyc running install_egg_info running egg_info writing plip.egg-info/PKG-INFO writing dependency_links to plip.egg-info/dependency_links.txt writing entry points to plip.egg-info/entry_points.txt writing requirements to plip.egg-info/requires.txt writing top-level names to plip.egg-info/top_level.txt reading manifest file 'plip.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'plip.egg-info/SOURCES.txt' Copying plip.egg-info to /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/plip-2.3.0.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.11/plipcmd.py -> /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/bin changing mode of /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/bin/plipcmd.py to 755 Installing plip script to /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/bin rm -rvf /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/bin/plip removed '/build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/bin/plip' mv /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/bin/plipcmd.py \ /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/bin/plipcmd mkdir -p /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/share/man/man1 export PYTHONPATH=/build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/lib/python3.11/dist-packages/:\ /build/reproducible-path/plip-2.3.0+dfsg/plip/modules; \ help2man --no-info --no-discard-stderr --version-string="2.3.0+dfsg-2" --name='Protein-Ligand Interaction Profiler (PLIP)' \ /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/bin/plipcmd > /build/reproducible-path/plip-2.3.0+dfsg/debian/plip/usr/share/man/man1/plipcmd.1 make[1]: Leaving directory '/build/reproducible-path/plip-2.3.0+dfsg' dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/plip/usr/share/doc/plip install -m0755 -d debian/plip/usr/share/doc/plip cp --reflink=auto -a ./DOCUMENTATION.md debian/plip/usr/share/doc/plip cp --reflink=auto -a ./README.md debian/plip/usr/share/doc/plip chmod -R u\+rw,go=rX debian/plip/usr/share/doc install -p -m0644 debian/copyright debian/plip/usr/share/doc/plip/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/plip/usr/share/doc/plip install -p -m0644 debian/.debhelper/generated/plip/dh_installchangelogs.dch.trimmed debian/plip/usr/share/doc/plip/changelog.Debian install -p -m0644 ./CHANGES.txt debian/plip/usr/share/doc/plip/changelog dh_installman -O--buildsystem=pybuild man-recode --to-code UTF-8 --suffix .dh-new debian/plip/usr/share/man/man1/plipcmd.1 mv debian/plip/usr/share/man/man1/plipcmd.1.dh-new debian/plip/usr/share/man/man1/plipcmd.1 chmod 0644 -- debian/plip/usr/share/man/man1/plipcmd.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:179: version: 6.20240422 D: dh_python3 dh_python3:180: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:181: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:182: supported Python versions: 3.11,3.12 (default=3.11) D: dh_python3 debhelper:174: source=plip, binary packages=['plip'] D: dh_python3 dh_python3:204: processing package plip... D: dh_python3 fs:50: moving files from debian/plip/usr/lib/python3.11/dist-packages to debian/plip/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/plip/usr/lib/python3.12/dist-packages to debian/plip/usr/lib/python3/dist-packages/ D: dh_python3 fs:335: package plip details = {'requires.txt': {'debian/plip/usr/lib/python3/dist-packages/plip-2.3.0.egg-info/requires.txt'}, 'egg-info': {'debian/plip/usr/lib/python3/dist-packages/plip-2.3.0.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package plip D: dh_python3 pydist:173: trying to find dependency for lxml (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for numpy (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps D: dh_python3 pydist:173: trying to find dependency for openbabel (python=None) D: dh_python3 pydist:277: invoking dpkg -S *python3/*/[Oo][Pp][Ee][Nn][Bb][Aa][Bb][Ee][Ll]-?*.*-info D: dh_python3 pydist:299: dpkg -S did not find package for openbabel: dpkg-query: no path found matching pattern *python3/*/[Oo][Pp][Ee][Nn][Bb][Aa][Bb][Ee][Ll]-?*.*-info I: dh_python3 pydist:302: Cannot find package that provides openbabel. Please add package that provides it to Build-Depends or add "openbabel python3-openbabel" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. D: dh_python3 depends:253: D={'python3-lxml', 'python3:any', 'python3-numpy'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/plip chmod a-x usr/share/doc/plip/DOCUMENTATION.md usr/share/doc/plip/README.md usr/share/doc/plip/changelog usr/share/doc/plip/changelog.Debian usr/share/man/man1/plipcmd.1 gzip -9nf usr/share/doc/plip/DOCUMENTATION.md usr/share/doc/plip/README.md usr/share/doc/plip/changelog usr/share/doc/plip/changelog.Debian usr/share/man/man1/plipcmd.1 cd '/build/reproducible-path/plip-2.3.0+dfsg' dh_fixperms -O--buildsystem=pybuild find debian/plip ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/plip/usr/share/doc -type f -a -true -a ! -regex 'debian/plip/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/plip/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/plip/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/plip -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/plip/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/plip/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/plip/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/plip/DEBIAN/postinst cat debian/plip.postinst.debhelper >> debian/plip/DEBIAN/postinst chmod 0755 -- debian/plip/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/plip/DEBIAN/prerm cat debian/plip.prerm.debhelper >> debian/plip/DEBIAN/prerm chmod 0755 -- debian/plip/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/plip/DEBIAN echo misc:Depends= >> debian/plip.substvars echo misc:Pre-Depends= >> debian/plip.substvars dpkg-gencontrol -pplip -ldebian/changelog -Tdebian/plip.substvars -cdebian/control -Pdebian/plip chmod 0644 -- debian/plip/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/plip/DEBIAN cd debian/plip >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/plip/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/plip .. dpkg-deb: building package 'plip' in '../plip_2.3.0+dfsg-2_all.deb'. dpkg-genbuildinfo --build=binary -O../plip_2.3.0+dfsg-2_armhf.buildinfo dpkg-genchanges --build=binary -O../plip_2.3.0+dfsg-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/10346 and its subdirectories I: Current time: Sat Jun 15 14:56:41 -12 2024 I: pbuilder-time-stamp: 1718506601 Sun Jun 16 02:56:48 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64a-armhf-rb.debian.net. Sun Jun 16 02:56:48 UTC 2024 I: Preparing to do remote build '2' on virt64a-armhf-rb.debian.net. Sun Jun 16 02:59:02 UTC 2024 I: Deleting $TMPDIR on virt64a-armhf-rb.debian.net. Sun Jun 16 02:59:05 UTC 2024 I: plip_2.3.0+dfsg-2_armhf.changes: Format: 1.8 Date: Thu, 04 Jan 2024 12:49:59 +0100 Source: plip Binary: plip Architecture: all Version: 2.3.0+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: plip - fully automated protein-ligand interaction profiler Closes: 1059946 Changes: plip (2.3.0+dfsg-2) unstable; urgency=medium . * Team upload. * Drop python-future from Build-Depends Closes: #1059946 * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) Checksums-Sha1: 2b59b734b01d3d878e9806f9f5615135ae08c900 83680 plip_2.3.0+dfsg-2_all.deb a0f5340dcff39f42d93e5e4b7cb33a65491cccf4 6369 plip_2.3.0+dfsg-2_armhf.buildinfo Checksums-Sha256: 7ec413dd4fbe1a9e64900ad96ceb247b5eea48e3f63813d219aa20d947488ffe 83680 plip_2.3.0+dfsg-2_all.deb c5d50cb7d20510ce67be75a1847151932acd874c3aca03285a45babb12ce58d3 6369 plip_2.3.0+dfsg-2_armhf.buildinfo Files: 35efb100cd763a95dd921105a0f7e5f4 83680 python optional plip_2.3.0+dfsg-2_all.deb fa587a1cb43e4e19c3723472eb0c328b 6369 python optional plip_2.3.0+dfsg-2_armhf.buildinfo Sun Jun 16 02:59:06 UTC 2024 I: diffoscope 271 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_34-8269.service Warning: program compiled against libxml 212 using older 209 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.huBDt7dx/plip_2.3.0+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.huBDt7dx/plip_2.3.0+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.huBDt7dx/plip_2.3.0+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.huBDt7dx/b1/plip_2.3.0+dfsg-2_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.huBDt7dx/b2/plip_2.3.0+dfsg-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.379s) 0.379s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.019s) 0.019s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 737ms CPU time consumed: 736ms Sun Jun 16 02:59:07 UTC 2024 I: diffoscope 271 found no differences in the changes files, and a .buildinfo file also exists. Sun Jun 16 02:59:07 UTC 2024 I: plip from trixie built successfully and reproducibly on armhf. Sun Jun 16 02:59:08 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Jun 16 02:59:08 UTC 2024 I: Submitting 8.0K b1/plip_2.3.0+dfsg-2_armhf.buildinfo.asc Sun Jun 16 02:59:09 UTC 2024 I: Submitting 8.0K b2/plip_2.3.0+dfsg-2_armhf.buildinfo.asc Sun Jun 16 02:59:13 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Jun 16 02:59:13 UTC 2024 I: Done submitting .buildinfo files. Sun Jun 16 02:59:13 UTC 2024 I: Removing signed plip_2.3.0+dfsg-2_armhf.buildinfo.asc files: removed './b1/plip_2.3.0+dfsg-2_armhf.buildinfo.asc' removed './b2/plip_2.3.0+dfsg-2_armhf.buildinfo.asc'