Wed Jun 26 18:32:09 UTC 2024 I: starting to build pinfish/trixie/armhf on jenkins on '2024-06-26 18:31' Wed Jun 26 18:32:09 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_34/8771/console.log Wed Jun 26 18:32:09 UTC 2024 I: Downloading source for trixie/pinfish=0.1.0+ds-4 --2024-06-26 18:32:09-- http://deb.debian.org/debian/pool/main/p/pinfish/pinfish_0.1.0%2bds-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2529 (2.5K) [text/prs.lines.tag] Saving to: ‘pinfish_0.1.0+ds-4.dsc’ 0K .. 100% 370M=0s 2024-06-26 18:32:09 (370 MB/s) - ‘pinfish_0.1.0+ds-4.dsc’ saved [2529/2529] Wed Jun 26 18:32:10 UTC 2024 I: pinfish_0.1.0+ds-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pinfish Binary: pinfish, pinfish-examples Architecture: any all Version: 0.1.0+ds-4 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra Homepage: https://github.com/nanoporetech/pinfish Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/pinfish Vcs-Git: https://salsa.debian.org/med-team/pinfish.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-google-uuid-dev, samtools Package-List: pinfish deb science optional arch=any pinfish-examples deb science optional arch=all Checksums-Sha1: 72cd9579ffc7d2edd6ad5429c3e934fbe3302746 68559048 pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz f60646b7255e280e7c3c5487f29707c8de208970 5054956 pinfish_0.1.0+ds.orig.tar.xz bbecc63cd114aa32541947d5c24458adc07b30fb 6600 pinfish_0.1.0+ds-4.debian.tar.xz Checksums-Sha256: 40957e398ab9bebdc89fe69dbef1c816da544e69a6aeed9c04371430f61f53bb 68559048 pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz c8213acc3f88d9e1294b9f9014a28b8fd410ebe0aab4793c7bb7263e7e465e4d 5054956 pinfish_0.1.0+ds.orig.tar.xz 244fe376c04deed5bbf98824576c5cfc7d2b819e1a7a595bf90207573681312d 6600 pinfish_0.1.0+ds-4.debian.tar.xz Files: f76133bed3fba383e81cc39b73cccdb1 68559048 pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz 70d87d84ead55e6112f068425ba60c56 5054956 pinfish_0.1.0+ds.orig.tar.xz 001d865b95bc9df10f0a0b25e5bda457 6600 pinfish_0.1.0+ds-4.debian.tar.xz Go-Import-Path: github.com/nanoporetech/pinfish -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWg8XkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHtyQ//bm6KvCO0/OxjjN4EE1tiUEJRQgj4p8TL WAI4JLFdz35OP8eopj4ABpao7I9ZCguAIwqXSRVkBw9XvwyUeK230J/+OlX9C674 ViHVFEjxzH0y2rEiKn2T8P4A/esuU5GE8p8hP2okqVwc4+T/hbYEqV5N6KfEopYs nI+WC/3cqTWSKxe/0UnmpNUqUe2FCdRQrj05ZfR6nIvtUghlZNKWIh7Jouk5heKp I5hXk3Vlm0pL+LvqaMjyWfLB8DUGp1l7kunqGKp0fp0pEm4Rvl93Spzrfdi7FRJv OCYV4a0VtTiWH+b3Ic7487dDy0Ibp+4f+kviCTp/lc5DlSNoXFzWzkYBvFZT1j5y gN2X0wV3kN0WHTJ5FEtvhBLCRS0T1Mjzdr5gmg/nrKnbUdEpQmSAuv7Z5i+Tlfqn 60POIAp5MPbuorpxNWI1y6v1nR/8wdVIIMHZTHeedHv8hDaY2EY62G7Cw3t0sJH8 lh6xgC+WpclzvAyCUwxL3hB8XXlAMp6OJ/QCsy2c7ozdMR0IK7aB/L4XX6MMaQHh 4gO6SBzUC50PAUkwHx3/UioBf8yq6O3wgwfNB7z4uqBKLo4P1ZFl7rvKAXsoOwo5 2cjKfoT0S5YZqtZsJcfhiop5j4wFkQbsRCjfih9jbjT5nO+xRnXeoWq/kC+Pc/4O LxWkiVagcFc= =HpBN -----END PGP SIGNATURE----- Wed Jun 26 18:32:10 UTC 2024 I: Checking whether the package is not for us Wed Jun 26 18:32:10 UTC 2024 I: Starting 1st build on remote node virt32z-armhf-rb.debian.net. Wed Jun 26 18:32:10 UTC 2024 I: Preparing to do remote build '1' on virt32z-armhf-rb.debian.net. Wed Jun 26 18:44:32 UTC 2024 I: Deleting $TMPDIR on virt32z-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jun 26 06:32:16 -12 2024 I: pbuilder-time-stamp: 1719426736 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pinfish_0.1.0+ds-4.dsc] I: copying [./pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz] I: copying [./pinfish_0.1.0+ds.orig.tar.xz] I: copying [./pinfish_0.1.0+ds-4.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Jan 12 07:59:53 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pinfish_0.1.0+ds-4.dsc: no acceptable signature found dpkg-source: info: extracting pinfish in pinfish-0.1.0+ds dpkg-source: info: unpacking pinfish_0.1.0+ds.orig.tar.xz dpkg-source: info: unpacking pinfish_0.1.0+ds.orig-debian-tests-data.tar.xz dpkg-source: info: unpacking pinfish_0.1.0+ds-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-gonum-stat-usage.patch dpkg-source: info: applying do-not-overflow-int.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/22895/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='92e11f217768405ba9f0a9c5ab361f1e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='22895' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aCr4oZ2L/pbuilderrc_2RoV --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aCr4oZ2L/b1 --logfile b1/build.log pinfish_0.1.0+ds-4.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32z 6.1.0-21-armmp-lpae #1 SMP Debian 6.1.90-1 (2024-05-03) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 5 22:35 /bin -> usr/bin I: user script /srv/workspace/pbuilder/22895/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-golang, golang-any, golang-github-biogo-biogo-dev, golang-github-biogo-hts-dev, golang-github-google-uuid-dev, samtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19419 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-golang; however: Package dh-golang is not installed. pbuilder-satisfydepends-dummy depends on golang-any; however: Package golang-any is not installed. pbuilder-satisfydepends-dummy depends on golang-github-biogo-biogo-dev; however: Package golang-github-biogo-biogo-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-github-biogo-hts-dev; however: Package golang-github-biogo-hts-dev is not installed. pbuilder-satisfydepends-dummy depends on golang-github-google-uuid-dev; however: Package golang-github-google-uuid-dev is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-golang{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} golang-1.22-go{a} golang-1.22-src{a} golang-any{a} golang-github-biogo-biogo-dev{a} golang-github-biogo-hts-dev{a} golang-github-creack-pty-dev{a} golang-github-google-uuid-dev{a} golang-github-kr-pretty-dev{a} golang-github-kr-text-dev{a} golang-github-rogpeppe-go-internal-dev{a} golang-github-ulikunitz-xz-dev{a} golang-github-yuin-goldmark-dev{a} golang-go{a} golang-golang-x-crypto-dev{a} golang-golang-x-mod-dev{a} golang-golang-x-net-dev{a} golang-golang-x-sync-dev{a} golang-golang-x-sys-dev{a} golang-golang-x-term-dev{a} golang-golang-x-text-dev{a} golang-golang-x-tools-dev{a} golang-gopkg-check.v1-dev{a} golang-src{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpsl5t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} samtools{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx pkg-config pkgconf publicsuffix wget 0 packages upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 71.8 MB of archives. After unpacking 378 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.23 [24.7 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-15 [157 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-4 [1090 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.1-9 [87.8 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.1-2 [1376 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-15 [683 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.16 [88.6 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b3 [598 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-15 [1230 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf debhelper all 13.16 [891 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf dh-golang all 1.62 [24.7 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf golang-1.22-src all 1.22.4-1 [18.8 MB] Get: 32 http://deb.debian.org/debian trixie/main armhf golang-1.22-go armhf 1.22.4-1 [21.5 MB] Get: 33 http://deb.debian.org/debian trixie/main armhf golang-src all 2:1.22~3 [5020 B] Get: 34 http://deb.debian.org/debian trixie/main armhf golang-go armhf 2:1.22~3 [44.2 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf golang-any armhf 2:1.22~3 [5104 B] Get: 36 http://deb.debian.org/debian trixie/main armhf golang-github-ulikunitz-xz-dev all 0.5.6-2 [352 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf golang-github-biogo-hts-dev all 1.4.4+dfsg1-1 [319 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf golang-github-creack-pty-dev all 1.1.21-1 [13.0 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf golang-github-kr-text-dev all 0.2.0-2 [10.2 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf golang-golang-x-mod-dev all 0.17.0-1 [103 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf golang-golang-x-sys-dev all 0.20.0-1 [430 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf golang-github-yuin-goldmark-dev all 1.7.1-1 [113 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf golang-golang-x-term-dev all 0.20.0-1 [14.8 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf golang-golang-x-text-dev all 0.15.0-1 [4006 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf golang-golang-x-crypto-dev all 1:0.23.0-1 [1689 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf golang-golang-x-net-dev all 1:0.25.0+dfsg-1 [895 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf golang-golang-x-sync-dev all 0.7.0-1 [19.0 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf golang-golang-x-tools-dev all 1:0.20.0+ds-1 [1571 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf golang-github-rogpeppe-go-internal-dev all 1.12.0-3 [103 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf golang-github-kr-pretty-dev all 0.3.1-1 [11.9 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf golang-gopkg-check.v1-dev all 0.0+git20200902.038fdea-1 [32.1 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf golang-github-biogo-biogo-dev all 1.0.4-1 [189 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf golang-github-google-uuid-dev all 1.6.0-1 [20.6 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.1-1 [22.1 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.2-1 [29.7 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.2-1 [75.5 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 59 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.2-1 [281 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.2-1 [113 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-6 [18.0 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-6 [50.1 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-1 [162 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.62.1-1 [63.1 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [53.2 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.0-5 [199 kB] Get: 68 http://deb.debian.org/debian trixie/main armhf libcurl3t64-gnutls armhf 8.8.0-1 [389 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf libdeflate0 armhf 1.20-1 [35.9 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf libhtscodecs2 armhf 1.6.0-1+b1 [61.3 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf libhts3t64 armhf 1.20+ds-1 [399 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf libncurses6 armhf 6.5-2 [81.8 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf samtools armhf 1.20-3 [620 kB] Fetched 71.8 MB in 1s (83.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. 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Processing triggers for libc-bin (2.38-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pinfish-0.1.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pinfish_0.1.0+ds-4_source.changes dpkg-buildpackage: info: source package pinfish dpkg-buildpackage: info: source version 0.1.0+ds-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --builddirectory=_build --buildsystem=golang --with=golang debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pinfish-0.1.0+ds' dh_auto_clean find . -name "*.bam" -delete make[1]: Leaving directory '/build/reproducible-path/pinfish-0.1.0+ds' dh_autoreconf_clean -O--builddirectory=_build -O--buildsystem=golang dh_clean -O--builddirectory=_build -O--buildsystem=golang debian/rules binary dh binary --builddirectory=_build --buildsystem=golang --with=golang dh_update_autotools_config -O--builddirectory=_build -O--buildsystem=golang dh_autoreconf -O--builddirectory=_build -O--buildsystem=golang dh_auto_configure -O--builddirectory=_build -O--buildsystem=golang dh_auto_build -O--builddirectory=_build -O--buildsystem=golang cd _build && go install -trimpath -v -p 3 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff internal/goarch internal/unsafeheader internal/cpu internal/abi internal/chacha8rand internal/bytealg internal/coverage/rtcov internal/godebugs internal/goexperiment internal/goos runtime/internal/atomic runtime/internal/math runtime/internal/sys runtime/internal/syscall internal/race sync/atomic unicode unicode/utf8 runtime encoding internal/itoa math/bits math cmp slices crypto/internal/alias crypto/internal/boring/sig unicode/utf16 internal/nettrace log/internal internal/reflectlite sync crypto/subtle internal/testlog internal/bisect internal/singleflight errors sort io strconv bytes strings internal/oserror syscall reflect bufio internal/safefilepath path github.com/biogo/biogo/feat github.com/biogo/biogo/feat/gene github.com/biogo/biogo/io/featio hash crypto crypto/internal/randutil internal/godebug internal/syscall/unix time internal/syscall/execenv math/rand vendor/golang.org/x/net/dns/dnsmessage internal/fmtsort encoding/binary internal/intern net/netip internal/poll io/fs crypto/md5 crypto/cipher os context crypto/internal/boring crypto/sha1 encoding/base64 runtime/cgo hash/crc32 fmt text/tabwriter container/heap io/ioutil path/filepath flag github.com/biogo/biogo/alphabet encoding/csv github.com/biogo/biogo/seq math/big github.com/biogo/biogo/feat/genome github.com/biogo/biogo/io/seqio github.com/biogo/biogo/io/seqio/fasta github.com/biogo/biogo/seq/linear github.com/biogo/biogo/io/featio/gff database/sql/driver encoding/hex encoding/json crypto/rand log compress/flate net compress/gzip github.com/biogo/biogo/io/seqio/fastq runtime/pprof github.com/biogo/hts/bgzf github.com/biogo/hts/bgzf/index github.com/biogo/hts/internal net/url os/exec github.com/biogo/hts/sam github.com/biogo/hts/bam github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff github.com/google/uuid github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pinfish-0.1.0+ds' dh_auto_test cd _build && go test -vet=off -v -p 3 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff ? github.com/nanoporetech/pinfish/cluster_gff [no test files] ? github.com/nanoporetech/pinfish/collapse_partials [no test files] ? github.com/nanoporetech/pinfish/polish_clusters [no test files] ? github.com/nanoporetech/pinfish/spliced_bam2gff [no test files] cat debian-tests-data/sirv_e0_sorted.sam| samtools view -Sb - > polish_clusters/test_data/sirv_e0_sorted.bam cat debian-tests-data/sirv_errors_gmap.sam| samtools view -Sb - > spliced_bam2gff/test_data/sirv_errors_gmap.bam cat debian-tests-data/sirv_no_errors_gmap.sam| samtools view -Sb - > spliced_bam2gff/test_data/sirv_no_errors_gmap.bam cat debian-tests-data/sirv_simulated.sam| samtools view -Sb - > spliced_bam2gff/test_data/sirv_simulated.bam make[1]: Leaving directory '/build/reproducible-path/pinfish-0.1.0+ds' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=_build -O--buildsystem=golang dh_prep -O--builddirectory=_build -O--buildsystem=golang debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/pinfish-0.1.0+ds' dh_auto_install -- --no-source cd _build && mkdir -p /build/reproducible-path/pinfish-0.1.0\+ds/debian/tmp/usr cd _build && cp -r bin /build/reproducible-path/pinfish-0.1.0\+ds/debian/tmp/usr make[1]: Leaving directory '/build/reproducible-path/pinfish-0.1.0+ds' dh_install -O--builddirectory=_build -O--buildsystem=golang dh_installdocs -O--builddirectory=_build -O--buildsystem=golang dh_installchangelogs -O--builddirectory=_build -O--buildsystem=golang dh_installman -O--builddirectory=_build -O--buildsystem=golang dh_installsystemduser -O--builddirectory=_build -O--buildsystem=golang dh_perl -O--builddirectory=_build -O--buildsystem=golang dh_link -O--builddirectory=_build -O--buildsystem=golang dh_strip_nondeterminism -O--builddirectory=_build -O--buildsystem=golang dh_compress -O--builddirectory=_build -O--buildsystem=golang dh_fixperms -O--builddirectory=_build -O--buildsystem=golang dh_missing -O--builddirectory=_build -O--buildsystem=golang dh_strip -a -O--builddirectory=_build -O--buildsystem=golang dh_strip: warning: Could not find the BuildID in debian/pinfish/usr/bin/collapse_partials dh_strip: warning: Could not find the BuildID in debian/pinfish/usr/bin/spliced_bam2gff dh_strip: warning: Could not find the BuildID in debian/pinfish/usr/bin/cluster_gff dh_strip: warning: Could not find the BuildID in debian/pinfish/usr/bin/polish_clusters dh_makeshlibs -a -O--builddirectory=_build -O--buildsystem=golang dh_shlibdeps -a -O--builddirectory=_build -O--buildsystem=golang dh_installdeb -O--builddirectory=_build -O--buildsystem=golang dh_golang -O--builddirectory=_build -O--buildsystem=golang dh_gencontrol -O--builddirectory=_build -O--buildsystem=golang dpkg-gencontrol: warning: Depends field of package pinfish-examples: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package pinfish: substitution variable ${misc:Static-Built-Using} unused, but is defined dh_md5sums -O--builddirectory=_build -O--buildsystem=golang dh_builddeb -O--builddirectory=_build -O--buildsystem=golang dpkg-deb: building package 'pinfish-examples' in '../pinfish-examples_0.1.0+ds-4_all.deb'. dpkg-deb: building package 'pinfish' in '../pinfish_0.1.0+ds-4_armhf.deb'. dpkg-genbuildinfo --build=binary -O../pinfish_0.1.0+ds-4_armhf.buildinfo dpkg-genchanges --build=binary -O../pinfish_0.1.0+ds-4_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/22895 and its subdirectories I: Current time: Wed Jun 26 06:38:09 -12 2024 I: pbuilder-time-stamp: 1719427089 Wed Jun 26 18:44:35 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64a-armhf-rb.debian.net. Wed Jun 26 18:44:35 UTC 2024 I: Preparing to do remote build '2' on virt64a-armhf-rb.debian.net. Wed Jun 26 19:03:11 UTC 2024 I: Deleting $TMPDIR on virt64a-armhf-rb.debian.net. Wed Jun 26 19:03:13 UTC 2024 I: pinfish_0.1.0+ds-4_armhf.changes: Format: 1.8 Date: Fri, 12 Jan 2024 07:23:48 +0100 Source: pinfish Binary: pinfish pinfish-examples Architecture: all armhf Version: 0.1.0+ds-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: pinfish - Collection of tools to annotate genomes using long read transcrip pinfish-examples - Examples and test data for pinfish Closes: 1048260 Changes: pinfish (0.1.0+ds-4) unstable; urgency=medium . * Team upload. * Cleanup bam files from dh_auto_test Closes: #1048260 * Standards-Version: 4.6.2 (routine-update) * Remove trailing whitespace in debian/copyright (routine-update) * Remove trailing whitespace in debian/rules (routine-update) * No tab in license text (routine-update) Add missing ${misc:Built-Using} to Built-Using on pinfish. Apply multi-arch hints. . + pinfish-examples: Add Multi-Arch: foreign. Checksums-Sha1: b3222551c292975b7ee83d9a513748b9b2cd838a 179449480 pinfish-examples_0.1.0+ds-4_all.deb c82398bef73741bca37c07e4ce40db2e7e788ac9 6653 pinfish_0.1.0+ds-4_armhf.buildinfo 823e8852adb62694c70d4950ee971577bf358ae4 1176832 pinfish_0.1.0+ds-4_armhf.deb Checksums-Sha256: f6250d75dabdc4071f1c06163c0a956e85def33f9ad154bd196cbb77d8f83177 179449480 pinfish-examples_0.1.0+ds-4_all.deb 2f9046bee7850e5221661db4fd41e9291290ed193059503640d797c02d53f82b 6653 pinfish_0.1.0+ds-4_armhf.buildinfo d4c77aeecf9a0aa6b6c2d48d10cb4a1a9c7bddaba17204248bb626ef0b2b662b 1176832 pinfish_0.1.0+ds-4_armhf.deb Files: 07064495c9668defd961a11653825115 179449480 science optional pinfish-examples_0.1.0+ds-4_all.deb f7947e129cae3c444b44258b2d3bf818 6653 science optional pinfish_0.1.0+ds-4_armhf.buildinfo be34bad9f62fbec5b5abae54ea942c2f 1176832 science optional pinfish_0.1.0+ds-4_armhf.deb Wed Jun 26 19:03:14 UTC 2024 I: diffoscope 271 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_34-8771.service Warning: program compiled against libxml 212 using older 209 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.aCr4oZ2L/pinfish_0.1.0+ds-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.aCr4oZ2L/pinfish_0.1.0+ds-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.aCr4oZ2L/pinfish_0.1.0+ds-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.aCr4oZ2L/b1/pinfish_0.1.0+ds-4_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.aCr4oZ2L/b2/pinfish_0.1.0+ds-4_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 2.244s) 2.244s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 1.890s) 1.890s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 2.574s CPU time consumed: 2.575s Wed Jun 26 19:03:17 UTC 2024 I: diffoscope 271 found no differences in the changes files, and a .buildinfo file also exists. Wed Jun 26 19:03:17 UTC 2024 I: pinfish from trixie built successfully and reproducibly on armhf. Wed Jun 26 19:03:18 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Jun 26 19:03:18 UTC 2024 I: Submitting 8.0K b1/pinfish_0.1.0+ds-4_armhf.buildinfo.asc Wed Jun 26 19:03:20 UTC 2024 I: Submitting 8.0K b2/pinfish_0.1.0+ds-4_armhf.buildinfo.asc Wed Jun 26 19:03:21 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jun 26 19:03:21 UTC 2024 I: Done submitting .buildinfo files. Wed Jun 26 19:03:21 UTC 2024 I: Removing signed pinfish_0.1.0+ds-4_armhf.buildinfo.asc files: removed './b1/pinfish_0.1.0+ds-4_armhf.buildinfo.asc' removed './b2/pinfish_0.1.0+ds-4_armhf.buildinfo.asc'