Sat May 4 06:24:32 UTC 2024 I: starting to build pilercr/trixie/armhf on jenkins on '2024-05-04 06:24' Sat May 4 06:24:32 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_11/3229/console.log Sat May 4 06:24:32 UTC 2024 I: Downloading source for trixie/pilercr=1.06+dfsg-5 --2024-05-04 06:24:32-- http://deb.debian.org/debian/pool/main/p/pilercr/pilercr_1.06%2bdfsg-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1986 (1.9K) [text/prs.lines.tag] Saving to: ‘pilercr_1.06+dfsg-5.dsc’ 0K . 100% 212M=0s 2024-05-04 06:24:32 (212 MB/s) - ‘pilercr_1.06+dfsg-5.dsc’ saved [1986/1986] Sat May 4 06:24:33 UTC 2024 I: pilercr_1.06+dfsg-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pilercr Binary: pilercr Architecture: any Version: 1.06+dfsg-5 Maintainer: Debian Med Packaging Team Uploaders: Andrius Merkys Homepage: https://www.drive5.com/pilercr/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/pilercr Vcs-Git: https://salsa.debian.org/med-team/pilercr.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man Package-List: pilercr deb science optional arch=any Checksums-Sha1: ec00e5c5e116ca933b7e23d19f8a2a630352a788 80128 pilercr_1.06+dfsg.orig.tar.xz b5cb10848f0ea4cf91289569d6f757af38ac2486 8600 pilercr_1.06+dfsg-5.debian.tar.xz Checksums-Sha256: 377d88b76960483a33e4f620bab180e5f994b43e550961ca3e3ea3b77d64ccc9 80128 pilercr_1.06+dfsg.orig.tar.xz 4bcc78676e4663ada0e8f799cbecbd3d02f7be36a1edca83c2e0299b61824f3f 8600 pilercr_1.06+dfsg-5.debian.tar.xz Files: ba866a26a14562fb2e3c425ad601ca08 80128 pilercr_1.06+dfsg.orig.tar.xz d7857b8b6aa4bdd1517a1d0500aa5367 8600 pilercr_1.06+dfsg-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmEaIaUUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafFluQ/+JH4FmdIhA5NEt6Cqt2P25LP5PTMP kcN+VtGUlmLGN1L1qIr6y9Hk1KfEgSyv6AY9Rq+z8Y9nWRroghkhXvsQr87W2z4H EdZHXQjkixwRbqshaRZ4jGv3N7ipchrhkvXxlqc026FGGsEHD5laEZ9qBvMbkWSK Js+xxQ6sYPq/KR3PK2cXVAfoM1lgNM+E14oweAdqa56BKlt8W+Mv7YAUgXwFoI/2 g0LBb/oOYtahutL3LtSffXXlC1UjZ+QWLcQ079W6km4ZaWDIcf82XryqBSYyswRf 0WshkSlvvV6VoSMZFWjNgTUdS0smDV+bprfhKOeayNXZZ4bIceMoYUr21o91PwZG rfbSPZMVFwQv4kw3DI3lej4FmjY0wkTuXupgN1rBGxH+vQ0dZfeyXN+gxC2Y/Ah6 1wJV8s8n/5VTXWpfb7N4vDy6CEpg6bFvppDuuxloZ3PQjGxinmqLIx5yv/UQ/9EN 1HWW09WkdhmTQ9EW61nRecNThuYVQFE4Mq4suH8c9fH0Oz6yZbstcyrKgSdvfaJL HZEWBnwgectke4f9VPRgOMJFF1STR1Wg4JPZ4joUJ5fmkA3QVI4P8mcFuSI1uhxZ 4u9Fq+ByIRK3oRj/aSFtmC2a/1f93Nq5BwuF548slFxuM7S11YRf/oJ1bCko58wi qf8qINh8TWZY0D0= =uLsb -----END PGP SIGNATURE----- Sat May 4 06:24:33 UTC 2024 I: Checking whether the package is not for us Sat May 4 06:24:33 UTC 2024 I: Starting 1st build on remote node wbq0-armhf-rb.debian.net. Sat May 4 06:24:33 UTC 2024 I: Preparing to do remote build '1' on wbq0-armhf-rb.debian.net. Sat May 4 06:31:00 UTC 2024 I: Deleting $TMPDIR on wbq0-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri May 3 18:24:41 -12 2024 I: pbuilder-time-stamp: 1714803881 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pilercr_1.06+dfsg-5.dsc] I: copying [./pilercr_1.06+dfsg.orig.tar.xz] I: copying [./pilercr_1.06+dfsg-5.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Aug 16 08:28:21 2021 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pilercr_1.06+dfsg-5.dsc: no acceptable signature found dpkg-source: info: extracting pilercr in pilercr-1.06+dfsg dpkg-source: info: unpacking pilercr_1.06+dfsg.orig.tar.xz dpkg-source: info: unpacking pilercr_1.06+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_unix_builds.patch dpkg-source: info: applying no-static.patch dpkg-source: info: applying debugsymbols.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/8507/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='abbf19f354fe4b3eaffbd8c10964882e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='8507' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5sOz2nlt/pbuilderrc_DQwd --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5sOz2nlt/b1 --logfile b1/build.log pilercr_1.06+dfsg-5.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux wbq0 6.1.0-20-armmp #1 SMP Debian 6.1.85-1 (2024-04-11) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 3 12:28 /bin -> usr/bin I: user script /srv/workspace/pbuilder/8507/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19441 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 18.6 MB of archives. After unpacking 69.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf liblocale-gettext-perl armhf 1.07-7 [14.4 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-3 [1088 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40-8 [85.6 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.1-1 [1375 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 24 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b3 [598 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf help2man armhf 1.49.3 [198 kB] Fetched 18.6 MB in 2s (10.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19441 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7_armhf.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3_armhf.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-14+b1_armhf.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../06-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-3_armhf.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40-8_armhf.deb ... Unpacking bsdextrautils (2.40-8) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../09-libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.12.1-1_armhf.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../23-libelf1t64_0.191-1+b1_armhf.deb ... Unpacking libelf1t64:armhf (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../25-libicu72_72.1-4+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-4+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../26-libxml2_2.9.14+dfsg-1.3+b3_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-14+b1_armhf.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package help2man. Preparing to unpack .../31-help2man_1.49.3_armhf.deb ... Unpacking help2man (1.49.3) ... Setting up libpipeline1:armhf (1.5.7-2) ... Setting up libicu72:armhf (72.1-4+b1) ... Setting up bsdextrautils (2.40-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:armhf (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:armhf (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b3) ... Setting up liblocale-gettext-perl (1.07-7) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.37-19) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pilercr-1.06+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pilercr_1.06+dfsg-5_source.changes dpkg-buildpackage: info: source package pilercr dpkg-buildpackage: info: source version 1.06+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pilercr-1.06+dfsg' rm -f *.o pilercr pilercr.1 make[1]: Leaving directory '/build/reproducible-path/pilercr-1.06+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/pilercr-1.06+dfsg' dpkg-architecture -f -aarmhf -c dh_auto_build -- 'GPP=$(CXX)' make -j3 "INSTALL=install --strip-program=true" GPP=\$\(CXX\) make[2]: Entering directory '/build/reproducible-path/pilercr-1.06+dfsg' g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c acceptaa.cpp -o acceptaa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c accepthit.cpp -o accepthit.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alignarrays.cpp -o alignarrays.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alignclust.cpp -o alignclust.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alignprofs.cpp -o alignprofs.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c aligntraps.cpp -o aligntraps.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alnarray.cpp -o alnarray.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alngivenpath.cpp -o alngivenpath.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c alpha.cpp -o alpha.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c assert.cpp -o assert.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c bittb.cpp -o bittb.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c clustcons.cpp -o clustcons.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c clustconsr.cpp -o clustconsr.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c cmp.cpp -o cmp.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c comp.cpp -o comp.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c cons.cpp -o cons.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c distcalc.cpp -o distcalc.o comp.cpp: In function 'void Complement(char*, int)': comp.cpp:31:29: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 31 | { register unsigned char *s, *t; | ^ comp.cpp:31:33: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 31 | { register unsigned char *s, *t; | ^ g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c distfunc.cpp -o distfunc.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c dp.cpp -o dp.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c estring.cpp -o estring.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c expandpiles.cpp -o expandpiles.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c filterb.cpp -o filterb.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c filterb2.cpp -o filterb2.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c findarrays.cpp -o findarrays.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c findpiles.cpp -o findpiles.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c fixbounds.cpp -o fixbounds.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getarraydata.cpp -o getarraydata.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getccs.cpp -o getccs.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getconsaa.cpp -o getconsaa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getgdtree.cpp -o getgdtree.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getparams.cpp -o getparams.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c getsubseq.cpp -o getsubseq.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c glbalign.cpp -o glbalign.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c hitstoimages.cpp -o hitstoimages.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c info.cpp -o info.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c kmerdist.cpp -o kmerdist.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c log.cpp -o log.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c logaa.cpp -o logaa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c loghits.cpp -o loghits.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c main.cpp -o main.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c makecontigmap.cpp -o makecontigmap.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c makegraph.cpp -o makegraph.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c makeindex.cpp -o makeindex.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c mem.cpp -o mem.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c mergearrays.cpp -o mergearrays.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c mergefilterhits.cpp -o mergefilterhits.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c mkrootmsa.cpp -o mkrootmsa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c msa.cpp -o msa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c multaln.cpp -o multaln.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c options.cpp -o options.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c outarray.cpp -o outarray.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c outdetail.cpp -o outdetail.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c outdetailaa.cpp -o outdetailaa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c outlocalaln.cpp -o outlocalaln.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c params.cpp -o params.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c pilercr.cpp -o pilercr.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c proffrommsa.cpp -o proffrommsa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c progaln.cpp -o progaln.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c progress.cpp -o progress.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c pwpath.cpp -o pwpath.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c quit.cpp -o quit.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c readfilterhits.cpp -o readfilterhits.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c readmfa.cpp -o readmfa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c revcomp.cpp -o revcomp.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c savefhits.cpp -o savefhits.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c savefilterhit.cpp -o savefilterhit.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c saveseqs.cpp -o saveseqs.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c savetraps.cpp -o savetraps.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c scoremx.cpp -o scoremx.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c seq.cpp -o seq.o savetraps.cpp: In function 'void SaveTrap(FILE*, const Trapezoid&)': savetraps.cpp:14:76: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 14 | WriteGFFRecord(f, QueryFrom, QueryTo, TargetFrom, TargetTo, false, "trap", 0, 0); | ^~~~~~ g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c seqvect.cpp -o seqvect.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c swsimple.cpp -o swsimple.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c tbsw.cpp -o tbsw.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c tree.cpp -o tree.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c upgma.cpp -o upgma.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c usage.cpp -o usage.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c utils.cpp -o utils.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c utils_linux.cpp -o utils_linux.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c utils_other.cpp -o utils_other.o In file included from pilercr.h:38, from utils.cpp:1: utils.cpp: In function 'char* StdioStrMode(FILEIO_MODE)': types.h:113:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 113 | #define FILIO_STRMODE_ReadOnly "r" | ^~~ utils.cpp:62:24: note: in expansion of macro 'FILIO_STRMODE_ReadOnly' 62 | return FILIO_STRMODE_ReadOnly; | ^~~~~~~~~~~~~~~~~~~~~~ types.h:114:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 114 | #define FILIO_STRMODE_WriteOnly "w" | ^~~ utils.cpp:64:24: note: in expansion of macro 'FILIO_STRMODE_WriteOnly' 64 | return FILIO_STRMODE_WriteOnly; | ^~~~~~~~~~~~~~~~~~~~~~~ types.h:115:41: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 115 | #define FILIO_STRMODE_ReadWrite "w+" | ^~~~ utils.cpp:66:24: note: in expansion of macro 'FILIO_STRMODE_ReadWrite' 66 | return FILIO_STRMODE_ReadWrite; | ^~~~~~~~~~~~~~~~~~~~~~~ utils.cpp:69:16: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 69 | return "r"; | ^~~ g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c utils_unix.cpp -o utils_unix.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c utils_win32.cpp -o utils_win32.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c validaa.cpp -o validaa.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c writearrays.cpp -o writearrays.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c writegff.cpp -o writegff.o g++ -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c writepiles.cpp -o writepiles.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pilercr-1.06+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o pilercr acceptaa.o accepthit.o alignarrays.o alignclust.o alignprofs.o aligntraps.o alnarray.o alngivenpath.o alpha.o assert.o bittb.o clustcons.o clustconsr.o cmp.o comp.o cons.o distcalc.o distfunc.o dp.o estring.o expandpiles.o filterb.o filterb2.o findarrays.o findpiles.o fixbounds.o getarraydata.o getccs.o getconsaa.o getgdtree.o getparams.o getsubseq.o glbalign.o hitstoimages.o info.o kmerdist.o log.o logaa.o loghits.o main.o makecontigmap.o makegraph.o makeindex.o mem.o mergearrays.o mergefilterhits.o mkrootmsa.o msa.o multaln.o options.o outarray.o outdetail.o outdetailaa.o outlocalaln.o params.o pilercr.o proffrommsa.o progaln.o progress.o pwpath.o quit.o readfilterhits.o readmfa.o revcomp.o savefhits.o savefilterhit.o saveseqs.o savetraps.o scoremx.o seq.o seqvect.o swsimple.o tbsw.o tree.o upgma.o usage.o utils.o utils_linux.o utils_other.o utils_unix.o utils_win32.o validaa.o writearrays.o writegff.o writepiles.o -lm make[2]: Leaving directory '/build/reproducible-path/pilercr-1.06+dfsg' help2man ./pilercr \ --name 'software for finding CRISPR repeats' \ --help-option '-options' --no-discard-stderr \ --version-string 1.06+dfsg \ --no-info > pilercr.1 make[1]: Leaving directory '/build/reproducible-path/pilercr-1.06+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/pilercr/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/pilercr/usr/bin/pilercr contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pilercr-dbgsym' in '../pilercr-dbgsym_1.06+dfsg-5_armhf.deb'. dpkg-deb: building package 'pilercr' in '../pilercr_1.06+dfsg-5_armhf.deb'. dpkg-genbuildinfo --build=binary -O../pilercr_1.06+dfsg-5_armhf.buildinfo dpkg-genchanges --build=binary -O../pilercr_1.06+dfsg-5_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/8507 and its subdirectories I: Current time: Fri May 3 18:30:53 -12 2024 I: pbuilder-time-stamp: 1714804253 Sat May 4 06:31:03 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64b-armhf-rb.debian.net. Sat May 4 06:31:03 UTC 2024 I: Preparing to do remote build '2' on virt64b-armhf-rb.debian.net. Sat May 4 06:35:13 UTC 2024 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net. Sat May 4 06:35:15 UTC 2024 I: pilercr_1.06+dfsg-5_armhf.changes: Format: 1.8 Date: Mon, 16 Aug 2021 13:54:23 +0530 Source: pilercr Binary: pilercr pilercr-dbgsym Architecture: armhf Version: 1.06+dfsg-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: pilercr - software for finding CRISPR repeats Changes: pilercr (1.06+dfsg-5) unstable; urgency=medium . [ Shruti Sridhar ] * Team upload. * Add test data * Add autopkgtests * Install README as docs . [ Nilesh Patra ] * d/tests/get-test-data: Add script for fetching data * d/docs: Install get-test-data script Checksums-Sha1: f0d7ef3c2cfa1859b90a5d6350a9b3a2d3c2e63a 1178588 pilercr-dbgsym_1.06+dfsg-5_armhf.deb 0bf0fbd123d65d2045cf23c18aabfe570217334d 5041 pilercr_1.06+dfsg-5_armhf.buildinfo 3233ba71d91e88c86eb7a469c803e9331a15cb3e 100200 pilercr_1.06+dfsg-5_armhf.deb Checksums-Sha256: ee02628567e41e66d9a34bbd2c14773ac64220e4bb3fdd068a05a3000d2cc06d 1178588 pilercr-dbgsym_1.06+dfsg-5_armhf.deb 2637ccda3bb607b482e7ed78a84c29f376dc848534bf1a03215d2f525298a302 5041 pilercr_1.06+dfsg-5_armhf.buildinfo 51d594e318b2fb04b1542ba93fbcfa62df34c76b0bb629d08b0afb37b10884ce 100200 pilercr_1.06+dfsg-5_armhf.deb Files: a34757f83d0a457d329d62cc2f55836c 1178588 debug optional pilercr-dbgsym_1.06+dfsg-5_armhf.deb 101dedf0c5fde2328de62e44c06410ec 5041 science optional pilercr_1.06+dfsg-5_armhf.buildinfo a96f0ef49830ac64f58efb822584edc6 100200 science optional pilercr_1.06+dfsg-5_armhf.deb Sat May 4 06:35:16 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_11-3229.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.5sOz2nlt/pilercr_1.06+dfsg-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.5sOz2nlt/pilercr_1.06+dfsg-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.5sOz2nlt/pilercr_1.06+dfsg-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.5sOz2nlt/b1/pilercr_1.06+dfsg-5_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.5sOz2nlt/b2/pilercr_1.06+dfsg-5_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.400s) 0.400s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.030s) 0.030s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 767ms CPU time consumed: 763ms Sat May 4 06:35:18 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Sat May 4 06:35:18 UTC 2024 I: pilercr from trixie built successfully and reproducibly on armhf. Sat May 4 06:35:19 UTC 2024 I: Submitting .buildinfo files to external archives: Sat May 4 06:35:19 UTC 2024 I: Submitting 8.0K b1/pilercr_1.06+dfsg-5_armhf.buildinfo.asc Sat May 4 06:35:20 UTC 2024 I: Submitting 8.0K b2/pilercr_1.06+dfsg-5_armhf.buildinfo.asc Sat May 4 06:35:21 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat May 4 06:35:21 UTC 2024 I: Done submitting .buildinfo files. Sat May 4 06:35:21 UTC 2024 I: Removing signed pilercr_1.06+dfsg-5_armhf.buildinfo.asc files: removed './b1/pilercr_1.06+dfsg-5_armhf.buildinfo.asc' removed './b2/pilercr_1.06+dfsg-5_armhf.buildinfo.asc'