Thu May 9 01:22:02 UTC 2024 I: starting to build pigx-rnaseq/trixie/armhf on jenkins on '2024-05-09 01:21' Thu May 9 01:22:02 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_16/5471/console.log Thu May 9 01:22:02 UTC 2024 I: Downloading source for trixie/pigx-rnaseq=0.1.0-1.1 --2024-05-09 01:22:02-- http://deb.debian.org/debian/pool/main/p/pigx-rnaseq/pigx-rnaseq_0.1.0-1.1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2685 (2.6K) [text/prs.lines.tag] Saving to: ‘pigx-rnaseq_0.1.0-1.1.dsc’ 0K .. 100% 346M=0s 2024-05-09 01:22:02 (346 MB/s) - ‘pigx-rnaseq_0.1.0-1.1.dsc’ saved [2685/2685] Thu May 9 01:22:02 UTC 2024 I: pigx-rnaseq_0.1.0-1.1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pigx-rnaseq Binary: pigx-rnaseq Architecture: all Version: 0.1.0-1.1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Homepage: https://github.com/BIMSBbioinfo/pigx_rnaseq Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/pigx-rnaseq Vcs-Git: https://salsa.debian.org/med-team/pigx-rnaseq.git Build-Depends: debhelper-compat (= 13), autoconf-archive, fastp, fastqc , hisat2 , libjs-jquery-datatables , libjs-jquery-tablesorter , megadepth, multiqc, python3-all, python3-deeptools, python3-htseq, r-bioc-deseq2 , r-bioc-rtracklayer , r-bioc-summarizedexperiment , r-bioc-tximport , r-cran-corrplot , r-cran-crosstalk , r-cran-data.table , r-cran-dt (>= 0.15+dfsg-2) , r-cran-ggplot2 , r-cran-ggrepel , r-cran-gprofiler2 , r-cran-ggpubr , r-cran-locfit , r-cran-pheatmap , r-cran-plotly , r-cran-reshape2 , r-cran-rjson , r-cran-rlang , r-cran-rmarkdown , r-cran-scales , salmon , samtools , snakemake , trim-galore Package-List: pigx-rnaseq deb science optional arch=all Checksums-Sha1: 8aa5324ffdab867ed0c3f44b6b97f54de0357938 4423380 pigx-rnaseq_0.1.0.orig.tar.xz b93fa0713a94bf87e9cc6c18144386b86b4b484b 15148 pigx-rnaseq_0.1.0-1.1.debian.tar.xz Checksums-Sha256: 63328aa7948ce81e9379b8e645831937236959dab6c401b8743e94a15cd2ecd2 4423380 pigx-rnaseq_0.1.0.orig.tar.xz 09973d40dbfa5882e9194d06f868d7608f697ee563d5b6eae22f017fe8955afe 15148 pigx-rnaseq_0.1.0-1.1.debian.tar.xz Files: 56333dbaed1000597d05ddf50818332b 4423380 pigx-rnaseq_0.1.0.orig.tar.xz 9e11de20a4efa2bd7920f067e5fbf20c 15148 pigx-rnaseq_0.1.0-1.1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQHEBAEBCgAuFiEEQGIgyLhVKAI3jM5BH1x6i0VWQxQFAmOYxTMQHGJhZ2VAZGVi aWFuLm9yZwAKCRAfXHqLRVZDFKHxDAC4KUEa37KnKuCUfcRKZ7CRRA6cPu3QcYlB HB8P2G8RFyt7gEko9M/BCDJVAdHStnZPzRn6IARbJnt1N02lT34W/TMQmaj4/rmd SugaNI/VEmEX4JSNhrLK3IjfwgbyE08gbL8tXRsKtrzc7I5Mmv9ABosPiDgaXGqv rzOGGLntq4rR44vjzL72JSKPWQZy6bGmoVDm+RVw4IwMKHzwGYAbeDtw/rMdnoIA 7yh0ZUb7MvJRl6wW6Hdgiwomb8V+YBZGgcrG7FPOqSKbk13/AFBUHbJ4VA0l9/0P o12s1WHA4dsbdqEhizqb9yuQNxPZ7Y8e7YQbTaY/4MW79t5SGDDpqTjcgdWVATOj lGkDIfamnTJ/AaWCh4lJRZ7KulYwWLlx7AN+F7vIgzL0dZsPdqPSF2iQx/43vz5P hibJCTGVzSLBPXTmc9BLlCMwJCIiGPBSS3wOi2aqpggx7J4qSqkh+33WzVDaEkKb xlZ28KQLnCnVCo2UB35o+vhi43N1/a4= =yZVN -----END PGP SIGNATURE----- Thu May 9 01:22:02 UTC 2024 I: Checking whether the package is not for us Thu May 9 01:22:02 UTC 2024 I: Starting 1st build on remote node virt32b-armhf-rb.debian.net. Thu May 9 01:22:02 UTC 2024 I: Preparing to do remote build '1' on virt32b-armhf-rb.debian.net. Thu May 9 01:23:33 UTC 2024 I: Deleting $TMPDIR on virt32b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 8 13:22:10 -12 2024 I: pbuilder-time-stamp: 1715217730 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pigx-rnaseq_0.1.0-1.1.dsc] I: copying [./pigx-rnaseq_0.1.0.orig.tar.xz] I: copying [./pigx-rnaseq_0.1.0-1.1.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Dec 13 18:32:19 2022 gpgv: using RSA key 406220C8B8552802378CCE411F5C7A8B45564314 gpgv: issuer "bage@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pigx-rnaseq_0.1.0-1.1.dsc: no acceptable signature found dpkg-source: info: extracting pigx-rnaseq in pigx-rnaseq-0.1.0 dpkg-source: info: unpacking pigx-rnaseq_0.1.0.orig.tar.xz dpkg-source: info: unpacking pigx-rnaseq_0.1.0-1.1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/12767/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='f44438197fe748808f94dd4b89b5f5ff' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='12767' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HYM1zid4/pbuilderrc_9hMZ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HYM1zid4/b1 --logfile b1/build.log pigx-rnaseq_0.1.0-1.1.dsc' SUDO_GID='112' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32b 6.1.0-21-armmp-lpae #1 SMP Debian 6.1.90-1 (2024-05-03) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 8 11:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/12767/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), autoconf-archive, fastp, fastqc, hisat2, libjs-jquery-datatables, libjs-jquery-tablesorter, megadepth, multiqc, python3-all, python3-deeptools, python3-htseq, r-bioc-deseq2, r-bioc-rtracklayer, r-bioc-summarizedexperiment, r-bioc-tximport, r-cran-corrplot, r-cran-crosstalk, r-cran-data.table, r-cran-dt (>= 0.15+dfsg-2), r-cran-ggplot2, r-cran-ggrepel, r-cran-gprofiler2, r-cran-ggpubr, r-cran-locfit, r-cran-pheatmap, r-cran-plotly, r-cran-reshape2, r-cran-rjson, r-cran-rlang, r-cran-rmarkdown, r-cran-scales, salmon, samtools, snakemake, trim-galore dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19444 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on autoconf-archive; however: Package autoconf-archive is not installed. pbuilder-satisfydepends-dummy depends on fastp; however: Package fastp is not installed. pbuilder-satisfydepends-dummy depends on fastqc; however: Package fastqc is not installed. pbuilder-satisfydepends-dummy depends on hisat2; however: Package hisat2 is not installed. pbuilder-satisfydepends-dummy depends on libjs-jquery-datatables; however: Package libjs-jquery-datatables is not installed. pbuilder-satisfydepends-dummy depends on libjs-jquery-tablesorter; however: Package libjs-jquery-tablesorter is not installed. pbuilder-satisfydepends-dummy depends on megadepth; however: Package megadepth is not installed. pbuilder-satisfydepends-dummy depends on multiqc; however: Package multiqc is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-deeptools; however: Package python3-deeptools is not installed. pbuilder-satisfydepends-dummy depends on python3-htseq; however: Package python3-htseq is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-deseq2; however: Package r-bioc-deseq2 is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rtracklayer; however: Package r-bioc-rtracklayer is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-summarizedexperiment; however: Package r-bioc-summarizedexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-tximport; however: Package r-bioc-tximport is not installed. pbuilder-satisfydepends-dummy depends on r-cran-corrplot; however: Package r-cran-corrplot is not installed. pbuilder-satisfydepends-dummy depends on r-cran-crosstalk; however: Package r-cran-crosstalk is not installed. pbuilder-satisfydepends-dummy depends on r-cran-data.table; however: Package r-cran-data.table is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dt (>= 0.15+dfsg-2); however: Package r-cran-dt is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggrepel; however: Package r-cran-ggrepel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-gprofiler2; however: Package r-cran-gprofiler2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggpubr; however: Package r-cran-ggpubr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-locfit; however: Package r-cran-locfit is not installed. pbuilder-satisfydepends-dummy depends on r-cran-pheatmap; however: Package r-cran-pheatmap is not installed. pbuilder-satisfydepends-dummy depends on r-cran-plotly; however: Package r-cran-plotly is not installed. pbuilder-satisfydepends-dummy depends on r-cran-reshape2; however: Package r-cran-reshape2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rjson; however: Package r-cran-rjson is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rlang; however: Package r-cran-rlang is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rmarkdown; however: Package r-cran-rmarkdown is not installed. pbuilder-satisfydepends-dummy depends on r-cran-scales; however: Package r-cran-scales is not installed. pbuilder-satisfydepends-dummy depends on salmon; however: Package salmon is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on snakemake; however: Package snakemake is not installed. pbuilder-satisfydepends-dummy depends on trim-galore; however: Package trim-galore is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} autoconf-archive{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} coinor-cbc{a} coinor-libcbc3.1{a} coinor-libcgl1{a} coinor-libclp1{a} coinor-libcoinutils3v5{a} coinor-libosi1v5{a} cutadapt{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} fastp{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-glyphicons-halflings{a} fonts-lyx{a} gettext{a} gettext-base{a} gir1.2-girepository-2.0{a} gir1.2-glib-2.0{a} git{a} git-man{a} groff-base{a} hisat2{a} intltool-debian{a} libarchive-zip-perl{a} libbigwig0t64{a} libblas3{a} libbrotli1{a} libbsd0{a} libcom-err2{a} libcurl3t64-gnutls{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} liberror-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libgirepository-1.0-1{a} libglib2.0-0{a} libglib2.0-0t64{ab} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libisal2{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libopenjp2-7{a} libpaper-utils{a} libpaper1{a} libpipeline1{a} libpng16-16t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsharpyuv0{a} libsodium23{a} libssh2-1t64{a} libsub-override-perl{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} megadepth{a} multiqc{a} netbase{a} openssl{a} pigz{a} po-debconf{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-adal{a} python3-aiohttp{a} python3-aiosignal{a} python3-alabaster{a} python3-all{a} python3-appdirs{a} python3-async-timeout{a} python3-attr{a} python3-avro{a} python3-azure{a} python3-azure-storage{a} python3-babel{a} python3-bcrypt{a} python3-blinker{a} python3-boto3{a} python3-botocore{a} python3-brotli{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-coloredlogs{a} python3-colormath{a} python3-configargparse{a} python3-connection-pool{a} python3-contourpy{a} python3-cryptography{a} python3-cutadapt{a} python3-cycler{a} python3-dateutil{a} python3-datrie{a} python3-decorator{a} python3-deeptools{a} python3-deeptoolsintervals{a} python3-distutils{a} python3-dnaio{a} python3-docutils{a} python3-dpath{a} python3-fastjsonschema{a} python3-fonttools{a} python3-frozenlist{a} python3-fs{a} python3-gi{a} python3-git{a} python3-gitdb{a} python3-hatch-vcs{a} python3-hatchling{a} python3-htseq{a} python3-humanfriendly{a} python3-idna{a} python3-imagesize{a} python3-importlib-metadata{a} python3-isodate{a} python3-jinja2{a} python3-jmespath{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-jupyter-core{a} python3-jwt{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-lzstring{a} python3-markdown{a} python3-markdown-it{a} python3-markupsafe{a} python3-marshmallow{a} python3-matplotlib{a} python3-mdurl{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-msal{a} python3-msal-extensions{a} python3-msrest{a} python3-msrestazure{a} python3-multidict{a} python3-nacl{a} python3-nbformat{a} python3-networkx{a} python3-numpy{a} python3-numpydoc{a} python3-oauthlib{a} python3-packaging{a} python3-paramiko{a} python3-pathspec{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-plac{a} python3-platformdirs{a} python3-plotly{a} python3-pluggy{a} python3-portalocker{a} python3-psutil{a} python3-pulp{a} python3-py{a} python3-py2bit{a} python3-pybigwig{a} python3-pygments{a} python3-pyparsing{a} python3-pysam{a} python3-ratelimiter{a} python3-referencing{a} python3-requests{a} python3-requests-oauthlib{a} python3-retry{a} python3-rich{a} python3-rich-click{a} python3-roman{a} python3-rpds-py{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-s3transfer{a} python3-scipy{a} python3-setuptools{a} python3-setuptools-scm{a} python3-simplejson{a} python3-six{a} python3-smart-open{a} python3-smmap{a} python3-snowballstemmer{a} python3-spectra{a} python3-sphinx{a} python3-stopit{a} python3-strictyaml{a} python3-sympy{a} python3-tabulate{a} python3-tenacity{a} python3-throttler{a} python3-tk{a} python3-toposort{a} python3-tqdm{a} python3-traitlets{a} python3-trove-classifiers{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-unicodedata2{a} python3-urllib3{a} python3-websocket{a} python3-wrapt{a} python3-xopen{a} python3-yaml{a} python3-yarl{a} python3-yte{a} python3-zipp{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} samtools{a} sensible-utils{a} sgml-base{a} snakemake{a} sphinx-common{a} tk8.6-blt2.5{a} trim-galore{a} tzdata{a} ucf{a} unicode-data{a} x11-common{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: bcftools curl cwltool graphicsmagick-imagemagick-compat imagemagick imagemagick-6.q16 isympy-common javascript-common krb5-locales less libarchive-cpio-perl libglib2.0-data libgpm2 libjs-filesaver libjson-xs-perl libltdl-dev libmail-sendmail-perl lynx node-clipboard openssh-client pandoc publicsuffix python3-aiodns python3-biopython python3-bs4 python3-cssselect python3-dropbox python3-flask python3-ftputil python3-gdal python3-hisat2 python3-html5lib python3-invoke python3-irodsclient python3-json-pointer python3-kubernetes python3-olefile python3-pydot python3-pygraphviz python3-rfc3987 python3-uritemplate python3-webcolors python3-yappi shared-mime-info texlive-xetex wget xdg-user-dirs 0 packages upgraded, 308 newly installed, 0 to remove and 0 not upgraded. Need to get 185 MB of archives. After unpacking 1415 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: fastqc but it is not installable Depends: r-bioc-deseq2 but it is not installable Depends: r-bioc-rtracklayer which is a virtual package and is not provided by any available package Depends: r-bioc-summarizedexperiment but it is not installable Depends: r-bioc-tximport but it is not installable Depends: r-cran-corrplot but it is not installable Depends: r-cran-crosstalk but it is not installable Depends: r-cran-data.table but it is not installable Depends: r-cran-dt (>= 0.15+dfsg-2) but it is not installable Depends: r-cran-ggplot2 but it is not installable Depends: r-cran-ggrepel but it is not installable Depends: r-cran-gprofiler2 but it is not installable Depends: r-cran-ggpubr but it is not installable Depends: r-cran-locfit but it is not installable Depends: r-cran-pheatmap but it is not installable Depends: r-cran-plotly but it is not installable Depends: r-cran-reshape2 but it is not installable Depends: r-cran-rjson but it is not installable Depends: r-cran-rlang but it is not installable Depends: r-cran-rmarkdown but it is not installable Depends: r-cran-scales but it is not installable Depends: salmon which is a virtual package and is not provided by any available package libglib2.0-0t64 : Breaks: libglib2.0-0 (< 2.78.4-7~) but 2.78.4-1 is to be installed Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} autoconf-archive{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} coinor-cbc{a} coinor-libcbc3.1{a} coinor-libcgl1{a} coinor-libclp1{a} coinor-libcoinutils3v5{a} coinor-libosi1v5{a} cutadapt{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} fastp{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-glyphicons-halflings{a} fonts-lyx{a} gettext{a} gettext-base{a} gir1.2-girepository-2.0{a} gir1.2-glib-2.0{a} git{a} git-man{a} groff-base{a} hisat2{a} intltool-debian{a} libarchive-zip-perl{a} libbigwig0t64{a} libblas3{a} libbrotli1{a} libbsd0{a} libcom-err2{a} libcurl3t64-gnutls{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} liberror-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libgirepository-1.0-1{a} libglib2.0-0{a} libglib2.0-0t64{ab} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libisal2{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libopenjp2-7{a} libpaper-utils{a} libpaper1{a} libpipeline1{a} libpng16-16t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.11t64{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsharpyuv0{a} libsodium23{a} libssh2-1t64{a} libsub-override-perl{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} megadepth{a} multiqc{a} netbase{a} openssl{a} pigz{a} po-debconf{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-adal{a} python3-aiohttp{a} python3-aiosignal{a} python3-alabaster{a} python3-all{a} python3-appdirs{a} python3-async-timeout{a} python3-attr{a} python3-avro{a} python3-azure{a} python3-azure-storage{a} python3-babel{a} python3-bcrypt{a} python3-blinker{a} python3-boto3{a} python3-botocore{a} python3-brotli{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-coloredlogs{a} python3-colormath{a} python3-configargparse{a} python3-connection-pool{a} python3-contourpy{a} python3-cryptography{a} python3-cutadapt{a} python3-cycler{a} python3-dateutil{a} python3-datrie{a} python3-decorator{a} python3-deeptools{a} python3-deeptoolsintervals{a} python3-distutils{a} python3-dnaio{a} python3-docutils{a} python3-dpath{a} python3-fastjsonschema{a} python3-fonttools{a} python3-frozenlist{a} python3-fs{a} python3-gi{a} python3-git{a} python3-gitdb{a} python3-hatch-vcs{a} python3-hatchling{a} python3-htseq{a} python3-humanfriendly{a} python3-idna{a} python3-imagesize{a} python3-importlib-metadata{a} python3-isodate{a} python3-jinja2{a} python3-jmespath{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-jupyter-core{a} python3-jwt{a} python3-kiwisolver{a} python3-lib2to3{a} python3-lxml{a} python3-lz4{a} python3-lzstring{a} python3-markdown{a} python3-markdown-it{a} python3-markupsafe{a} python3-marshmallow{a} python3-matplotlib{a} python3-mdurl{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-msal{a} python3-msal-extensions{a} python3-msrest{a} python3-msrestazure{a} python3-multidict{a} python3-nacl{a} python3-nbformat{a} python3-networkx{a} python3-numpy{a} python3-numpydoc{a} python3-oauthlib{a} python3-packaging{a} python3-paramiko{a} python3-pathspec{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-plac{a} python3-platformdirs{a} python3-plotly{a} python3-pluggy{a} python3-portalocker{a} python3-psutil{a} python3-pulp{a} python3-py{a} python3-py2bit{a} python3-pybigwig{a} python3-pygments{a} python3-pyparsing{a} python3-pysam{a} python3-ratelimiter{a} python3-referencing{a} python3-requests{a} python3-requests-oauthlib{a} python3-retry{a} python3-rich{a} python3-rich-click{a} python3-roman{a} python3-rpds-py{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-s3transfer{a} python3-scipy{a} python3-setuptools{a} python3-setuptools-scm{a} python3-simplejson{a} python3-six{a} python3-smart-open{a} python3-smmap{a} python3-snowballstemmer{a} python3-spectra{a} python3-sphinx{a} python3-stopit{a} python3-strictyaml{a} python3-sympy{a} python3-tabulate{a} python3-tenacity{a} python3-throttler{a} python3-tk{a} python3-toposort{a} python3-tqdm{a} python3-traitlets{a} python3-trove-classifiers{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-unicodedata2{a} python3-urllib3{a} python3-websocket{a} python3-wrapt{a} python3-xopen{a} python3-yaml{a} python3-yarl{a} python3-yte{a} python3-zipp{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} samtools{a} sensible-utils{a} sgml-base{a} snakemake{a} sphinx-common{a} tk8.6-blt2.5{a} trim-galore{a} tzdata{a} ucf{a} unicode-data{a} x11-common{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: bcftools curl cwltool graphicsmagick-imagemagick-compat imagemagick imagemagick-6.q16 isympy-common javascript-common krb5-locales less libarchive-cpio-perl libglib2.0-data libgpm2 libjs-filesaver libjson-xs-perl libltdl-dev libmail-sendmail-perl lynx node-clipboard openssh-client pandoc publicsuffix python3-aiodns python3-biopython python3-bs4 python3-cssselect python3-dropbox python3-flask python3-ftputil python3-gdal python3-hisat2 python3-html5lib python3-invoke python3-irodsclient python3-json-pointer python3-kubernetes python3-olefile python3-pydot python3-pygraphviz python3-rfc3987 python3-uritemplate python3-webcolors python3-yappi shared-mime-info texlive-xetex wget xdg-user-dirs 0 packages upgraded, 308 newly installed, 0 to remove and 0 not upgraded. Need to get 185 MB of archives. After unpacking 1415 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/12767 and its subdirectories Thu May 9 01:23:37 UTC 2024 W: No second build log, what happened? Thu May 9 01:23:37 UTC 2024 W: Downloading the build dependencies failed Thu May 9 01:23:37 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Thu May 9 01:23:37 UTC 2024 W: Network problems are automatically rescheduled after some hours.