Mon Mar 25 11:20:52 UTC 2024 I: starting to build phybin/trixie/armhf on jenkins on '2024-03-25 11:20' Mon Mar 25 11:20:52 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_35/1204/console.log Mon Mar 25 11:20:52 UTC 2024 I: Downloading source for trixie/phybin=0.3-6 --2024-03-25 11:20:52-- http://deb.debian.org/debian/pool/main/p/phybin/phybin_0.3-6.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1607 (1.6K) [text/prs.lines.tag] Saving to: ‘phybin_0.3-6.dsc’ 0K . 100% 197M=0s 2024-03-25 11:20:52 (197 MB/s) - ‘phybin_0.3-6.dsc’ saved [1607/1607] Mon Mar 25 11:20:52 UTC 2024 I: phybin_0.3-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: phybin Binary: phybin Architecture: any Version: 0.3-6 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://www.cs.indiana.edu/~rrnewton/projects/phybin/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/phybin Vcs-Git: https://salsa.debian.org/med-team/phybin.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11), haskell-devscripts, cdbs, ghc, libghc-hunit-dev, libghc-async-dev, libghc-fgl-dev, libghc-graphviz-dev, libghc-hierarchical-clustering-dev, libghc-parsec3-dev, libghc-prettyclass-dev, libghc-split-dev, libghc-text-dev, libghc-vector-dev, libghc-tasty-dev, libghc-tasty-hunit-dev, libghc-tasty-th-dev Package-List: phybin deb science optional arch=any Checksums-Sha1: f7f19054d67009425082a1a8d8492cc57c55b85c 111501 phybin_0.3.orig.tar.gz c40d507564799a6be98cca1f1464d4a0ca6c3be3 7276 phybin_0.3-6.debian.tar.xz Checksums-Sha256: 45463b4bb65df8fb090eebff8d4340703104dc4a19c61a1eb27ebe8441ef07e0 111501 phybin_0.3.orig.tar.gz ef733f59217afe811e33f4affdeeaffb00707b37f77057908e9e331f35a7dadb 7276 phybin_0.3-6.debian.tar.xz Files: 4011a17b976241f48cfd3f8cf04070db 111501 phybin_0.3.orig.tar.gz f2da57028bb3818c633db0a0de338f13 7276 phybin_0.3-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iHUEARYIAB0WIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCY659xQAKCRAqJ5BL1yQ+ 2pnAAQD1QgDmPXyH/yWptK6F8DBMXwyyDnmfozRAoNjoro73kAD9E+/FaX+e1wf5 kHfKGZaSwAIXK5navleDgLJJWmVpiwk= =O686 -----END PGP SIGNATURE----- Mon Mar 25 11:20:52 UTC 2024 I: Checking whether the package is not for us Mon Mar 25 11:20:52 UTC 2024 I: Starting 1st build on remote node cbxi4pro0-armhf-rb.debian.net. Mon Mar 25 11:20:52 UTC 2024 I: Preparing to do remote build '1' on cbxi4pro0-armhf-rb.debian.net. Mon Mar 25 11:54:16 UTC 2024 I: Deleting $TMPDIR on cbxi4pro0-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Mar 24 23:21:01 -12 2024 I: pbuilder-time-stamp: 1711365661 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [phybin_0.3-6.dsc] I: copying [./phybin_0.3.orig.tar.gz] I: copying [./phybin_0.3-6.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Dec 30 05:57:25 2022 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./phybin_0.3-6.dsc: no acceptable signature found dpkg-source: info: extracting phybin in phybin-0.3 dpkg-source: info: unpacking phybin_0.3.orig.tar.gz dpkg-source: info: unpacking phybin_0.3-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying unconstraint-text-dependency.patch dpkg-source: info: applying unsafeIOToST.patch dpkg-source: info: applying ghc-8.6.patch dpkg-source: info: applying switch-to-tasty.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1738/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='28c4f2f626294b7e8f684f75fc19ebe5' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1738' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GMVfou0x/pbuilderrc_Omg4 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GMVfou0x/b1 --logfile b1/build.log phybin_0.3-6.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux cbxi4pro0 6.1.0-18-armmp #1 SMP Debian 6.1.76-1 (2024-02-01) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 24 11:27 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1738/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11), haskell-devscripts, cdbs, ghc, libghc-hunit-dev, libghc-async-dev, libghc-fgl-dev, libghc-graphviz-dev, libghc-hierarchical-clustering-dev, libghc-parsec3-dev, libghc-prettyclass-dev, libghc-split-dev, libghc-text-dev, libghc-vector-dev, libghc-tasty-dev, libghc-tasty-hunit-dev, libghc-tasty-th-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19577 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on haskell-devscripts; however: Package haskell-devscripts is not installed. pbuilder-satisfydepends-dummy depends on cdbs; however: Package cdbs is not installed. pbuilder-satisfydepends-dummy depends on ghc; however: Package ghc is not installed. pbuilder-satisfydepends-dummy depends on libghc-hunit-dev; however: Package libghc-hunit-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-async-dev; however: Package libghc-async-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-fgl-dev; however: Package libghc-fgl-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-graphviz-dev; however: Package libghc-graphviz-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-hierarchical-clustering-dev; however: Package libghc-hierarchical-clustering-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-parsec3-dev; however: Package libghc-parsec3-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-prettyclass-dev; however: Package libghc-prettyclass-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-split-dev; however: Package libghc-split-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-text-dev; however: Package libghc-text-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-vector-dev; however: Package libghc-vector-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-tasty-dev; however: Package libghc-tasty-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-tasty-hunit-dev; however: Package libghc-tasty-hunit-dev is not installed. pbuilder-satisfydepends-dummy depends on libghc-tasty-th-dev; however: Package libghc-tasty-th-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cdbs{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-buildinfo{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} ghc{a} groff-base{a} haskell-devscripts{a} haskell-devscripts-minimal{a} hscolour{a} html-xml-utils{a} intltool-debian{a} libarchive-zip-perl{a} libb-hooks-op-check-perl{a} libbrotli1{a} libbsd-dev{a} libbsd0{a} libconst-fast-perl{a} libcurl3-gnutls{a} libcurl4{a} libdata-optlist-perl{a} libdebhelper-perl{a} libdevel-callchecker-perl{a} libdevel-confess-perl{a} libdynaloader-functions-perl{a} libedit2{a} libelf1{a} libexpat1{a} libffi-dev{a} libfile-stripnondeterminism-perl{a} libghc-ansi-terminal-dev{a} libghc-ansi-terminal-types-dev{a} libghc-ansi-wl-pprint-dev{a} libghc-async-dev{a} libghc-base-compat-dev{a} libghc-call-stack-dev{a} libghc-colour-dev{a} libghc-dlist-dev{a} libghc-fgl-dev{a} libghc-graphviz-dev{a} libghc-hashable-dev{a} libghc-hierarchical-clustering-dev{a} libghc-hunit-dev{a} libghc-optparse-applicative-dev{a} libghc-polyparse-dev{a} libghc-prettyclass-dev{a} libghc-primitive-dev{a} libghc-random-dev{a} libghc-split-dev{a} libghc-splitmix-dev{a} libghc-src-exts-dev{a} libghc-tagged-dev{a} libghc-tasty-dev{a} libghc-tasty-hunit-dev{a} libghc-tasty-th-dev{a} libghc-temporary-dev{a} libghc-transformers-compat-dev{a} libghc-unbounded-delays-dev{a} libghc-vector-dev{a} libghc-vector-stream-dev{a} libghc-wl-pprint-text-dev{a} libgmp-dev{a} libgmpxx4ldbl{a} libicu72{a} libipc-run3-perl{a} libldap-2.5-0{a} liblist-someutils-perl{a} libllvm15{a} libmagic-mgc{a} libmagic1{a} libmd-dev{a} libmodule-implementation-perl{a} libmodule-runtime-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libparams-classify-perl{a} libparams-util-perl{a} libpath-tiny-perl{a} libpfm4{a} libpipeline1{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-install-perl{a} libsub-override-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunicode-utf8-perl{a} libxml2{a} libz3-4{a} llvm-15{a} llvm-15-linker-tools{a} llvm-15-runtime{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-minimal{a} python3-pkg-resources{a} python3-scour{a} python3.11{a} python3.11-minimal{a} readline-common{a} scour{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: binfmt-support ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common liblist-someutils-xs-perl libltdl-dev libmail-sendmail-perl libsasl2-modules llvm-15-dev lynx publicsuffix systemd wget 0 packages upgraded, 129 newly installed, 0 to remove and 0 not upgraded. Need to get 181 MB of archives. After unpacking 1255 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libbsd0 armhf 0.12.2-1 [127 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libedit2 armhf 3.1-20230828-1 [76.8 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b2 [599 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf libz3-4 armhf 4.8.12-3.1+b2 [6324 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf libllvm15 armhf 1:15.0.7-10 [20.6 MB] Get: 7 http://deb.debian.org/debian trixie/main armhf llvm-15-runtime armhf 1:15.0.7-10 [439 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf llvm-15-linker-tools armhf 1:15.0.7-10 [1052 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-4+b1 [18.2 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-4+b1 [50.1 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.13+dfsg-5+b3 [158 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.59.0-1 [62.0 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libssh2-1 armhf 1.11.0-4 [197 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf libcurl4 armhf 8.5.0-2 [383 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libpfm4 armhf 4.13.0+git32-g0d4ed0e-1 [46.1 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf llvm-15 armhf 1:15.0.7-10 [10.3 MB] Get: 20 http://deb.debian.org/debian trixie/main armhf libgmpxx4ldbl armhf 2:6.3.0+dfsg-2+b1 [328 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libgmp-dev armhf 2:6.3.0+dfsg-2+b1 [591 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libffi-dev armhf 3.4.6-1 [55.9 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libmd-dev armhf 1.1.0-2 [51.6 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libbsd-dev armhf 0.12.2-1 [252 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libncurses6 armhf 6.4+20240113-1 [81.8 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libncurses-dev armhf 6.4+20240113-1 [309 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf ghc armhf 9.4.7-3 [98.6 MB] Get: 28 http://deb.debian.org/debian trixie/main armhf libpython3.11-minimal armhf 3.11.8-1 [802 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.5.0-2+b2 [80.2 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf python3.11-minimal armhf 3.11.8-1 [1707 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.11.6-1 [26.2 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf tzdata all 2024a-1 [255 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-3 [69.1 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libreadline8 armhf 8.2-3+b1 [144 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf libpython3.11-stdlib armhf 3.11.8-1 [1709 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf python3.11 armhf 3.11.8-1 [597 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.11.6-1 [9224 B] Get: 40 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.11.6-1 [26.2 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-2+b1 [314 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libmagic1 armhf 1:5.45-2+b1 [97.9 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-2+b1 [42.2 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-3 [1088 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.39.3-6 [81.2 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-1+b2 [33.4 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.0-3 [1367 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf python3-pkg-resources all 68.1.2-2 [241 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf python3-scour all 0.38.2-4.1 [55.7 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf scour all 0.38.2-4.1 [17.2 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf cdbs all 0.4.166 [47.3 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf dctrl-tools armhf 2.24-3 [96.0 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.14.1 [85.6 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 68 http://deb.debian.org/debian trixie/main armhf libelf1 armhf 0.190-1+b1 [171 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1 [101 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf debhelper all 13.14.1 [890 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf dh-buildinfo all 0.11+nmu2 [18.4 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf libcurl3-gnutls armhf 8.5.0-2 [378 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf html-xml-utils armhf 7.7-1.1 [233 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf libparams-util-perl armhf 1.102-2+b2 [23.3 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf libsub-install-perl all 0.929-1 [10.5 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 80 http://deb.debian.org/debian trixie/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 82 http://deb.debian.org/debian trixie/main armhf libconst-fast-perl all 0.014-2 [8792 B] Get: 83 http://deb.debian.org/debian trixie/main armhf libdevel-confess-perl all 0.009004-3 [19.6 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf libipc-run3-perl all 0.049-1 [31.5 kB] Get: 85 http://deb.debian.org/debian trixie/main armhf libb-hooks-op-check-perl armhf 0.22-2+b2 [10.3 kB] Get: 86 http://deb.debian.org/debian trixie/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 87 http://deb.debian.org/debian trixie/main armhf libdevel-callchecker-perl armhf 0.008-2+b1 [14.9 kB] Get: 88 http://deb.debian.org/debian trixie/main armhf libparams-classify-perl armhf 0.015-2+b2 [21.3 kB] Get: 89 http://deb.debian.org/debian trixie/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 90 http://deb.debian.org/debian trixie/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 91 http://deb.debian.org/debian trixie/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 92 http://deb.debian.org/debian trixie/main armhf liblist-someutils-perl all 0.59-1 [37.1 kB] Get: 93 http://deb.debian.org/debian trixie/main armhf libpath-tiny-perl all 0.144-1 [56.4 kB] Get: 94 http://deb.debian.org/debian trixie/main armhf libtimedate-perl all 2.3300-2 [39.3 kB] Get: 95 http://deb.debian.org/debian trixie/main armhf libunicode-utf8-perl armhf 0.62-2+b1 [19.2 kB] Get: 96 http://deb.debian.org/debian trixie/main armhf haskell-devscripts-minimal all 0.16.33 [53.0 kB] Get: 97 http://deb.debian.org/debian trixie/main armhf hscolour armhf 1.24.4-5+b1 [1963 kB] Get: 98 http://deb.debian.org/debian trixie/main armhf haskell-devscripts all 0.16.33 [6156 B] Get: 99 http://deb.debian.org/debian trixie/main armhf libghc-colour-dev armhf 2.3.6-2+b1 [228 kB] Get: 100 http://deb.debian.org/debian trixie/main armhf libghc-ansi-terminal-types-dev armhf 0.11.5-2+b1 [109 kB] Get: 101 http://deb.debian.org/debian trixie/main armhf libghc-ansi-terminal-dev armhf 0.11.5-1+b1 [76.3 kB] Get: 102 http://deb.debian.org/debian trixie/main armhf libghc-ansi-wl-pprint-dev armhf 0.6.9-6+b1 [79.2 kB] Get: 103 http://deb.debian.org/debian trixie/main armhf libghc-hashable-dev armhf 1.4.3.0-1+b1 [139 kB] Get: 104 http://deb.debian.org/debian trixie/main armhf libghc-async-dev armhf 2.2.4-4+b1 [72.7 kB] Get: 105 http://deb.debian.org/debian trixie/main armhf libghc-base-compat-dev armhf 0.12.3-1+b1 [89.9 kB] Get: 106 http://deb.debian.org/debian trixie/main armhf libghc-call-stack-dev armhf 0.4.0-2+b1 [25.2 kB] Get: 107 http://deb.debian.org/debian trixie/main armhf libghc-dlist-dev armhf 1.0-3+b1 [82.3 kB] Get: 108 http://deb.debian.org/debian trixie/main armhf libghc-fgl-dev armhf 5.8.1.1-1 [458 kB] Get: 109 http://deb.debian.org/debian trixie/main armhf libghc-polyparse-dev armhf 1.13-3+b1 [407 kB] Get: 110 http://deb.debian.org/debian trixie/main armhf libghc-splitmix-dev armhf 0.1.0.5-1+b1 [56.1 kB] Get: 111 http://deb.debian.org/debian trixie/main armhf libghc-random-dev armhf 1.2.1.1-3+b2 [325 kB] Get: 112 http://deb.debian.org/debian trixie/main armhf libghc-temporary-dev armhf 1.3-4+b1 [25.2 kB] Get: 113 http://deb.debian.org/debian trixie/main armhf libghc-wl-pprint-text-dev armhf 1.2.0.2-2+b1 [97.8 kB] Get: 114 http://deb.debian.org/debian trixie/main armhf libghc-graphviz-dev armhf 2999.20.1.0-2+b2 [4221 kB] Get: 115 http://deb.debian.org/debian trixie/main armhf libghc-hierarchical-clustering-dev armhf 0.4.7-3+b1 [86.1 kB] Get: 116 http://deb.debian.org/debian trixie/main armhf libghc-hunit-dev armhf 1.6.2.0-2+b1 [115 kB] Get: 117 http://deb.debian.org/debian trixie/main armhf libghc-transformers-compat-dev armhf 0.7.2-1+b1 [164 kB] Get: 118 http://deb.debian.org/debian trixie/main armhf libghc-optparse-applicative-dev armhf 0.17.1.0-1+b1 [383 kB] Get: 119 http://deb.debian.org/debian trixie/main armhf libghc-prettyclass-dev armhf 1.0.0.0-11+b1 [55.5 kB] Get: 120 http://deb.debian.org/debian trixie/main armhf libghc-primitive-dev armhf 0.8.0.0-1+b1 [396 kB] Get: 121 http://deb.debian.org/debian trixie/main armhf libghc-split-dev armhf 0.2.3.5-2+b1 [54.4 kB] Get: 122 http://deb.debian.org/debian trixie/main armhf libghc-src-exts-dev armhf 1.23.1-4+b1 [2925 kB] Get: 123 http://deb.debian.org/debian trixie/main armhf libghc-tagged-dev armhf 0.8.7-1+b1 [84.2 kB] Get: 124 http://deb.debian.org/debian trixie/main armhf libghc-unbounded-delays-dev armhf 0.1.1.1-2+b1 [21.0 kB] Get: 125 http://deb.debian.org/debian trixie/main armhf libghc-tasty-dev armhf 1.4.3-2+b1 [393 kB] Get: 126 http://deb.debian.org/debian trixie/main armhf libghc-tasty-hunit-dev armhf 0.10.1-1 [46.5 kB] Get: 127 http://deb.debian.org/debian trixie/main armhf libghc-tasty-th-dev armhf 0.1.7-6+b1 [30.3 kB] Get: 128 http://deb.debian.org/debian trixie/main armhf libghc-vector-stream-dev armhf 0.1.0.0-2+b1 [107 kB] Get: 129 http://deb.debian.org/debian trixie/main armhf libghc-vector-dev armhf 0.13.1.0-1 [2211 kB] Fetched 181 MB in 12s (15.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19577 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.12.2-1_armhf.deb ... Unpacking libbsd0:armhf (0.12.2-1) ... Selecting previously unselected package libedit2:armhf. Preparing to unpack .../01-libedit2_3.1-20230828-1_armhf.deb ... Unpacking libedit2:armhf (3.1-20230828-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../02-libicu72_72.1-4+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-4+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../03-libxml2_2.9.14+dfsg-1.3+b2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package libz3-4:armhf. Preparing to unpack .../04-libz3-4_4.8.12-3.1+b2_armhf.deb ... Unpacking libz3-4:armhf (4.8.12-3.1+b2) ... Selecting previously unselected package libllvm15:armhf. Preparing to unpack .../05-libllvm15_1%3a15.0.7-10_armhf.deb ... Unpacking libllvm15:armhf (1:15.0.7-10) ... Selecting previously unselected package llvm-15-runtime. Preparing to unpack .../06-llvm-15-runtime_1%3a15.0.7-10_armhf.deb ... Unpacking llvm-15-runtime (1:15.0.7-10) ... Selecting previously unselected package llvm-15-linker-tools. Preparing to unpack .../07-llvm-15-linker-tools_1%3a15.0.7-10_armhf.deb ... Unpacking llvm-15-linker-tools (1:15.0.7-10) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../08-libbrotli1_1.1.0-2+b3_armhf.deb ... Unpacking libbrotli1:armhf (1.1.0-2+b3) ... Selecting previously unselected package libsasl2-modules-db:armhf. Preparing to unpack .../09-libsasl2-modules-db_2.1.28+dfsg1-4+b1_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libsasl2-2:armhf. Preparing to unpack .../10-libsasl2-2_2.1.28+dfsg1-4+b1_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.28+dfsg1-4+b1) ... Selecting previously unselected package libldap-2.5-0:armhf. Preparing to unpack .../11-libldap-2.5-0_2.5.13+dfsg-5+b3_armhf.deb ... Unpacking libldap-2.5-0:armhf (2.5.13+dfsg-5+b3) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../12-libnghttp2-14_1.59.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.59.0-1) ... Selecting previously unselected package libpsl5:armhf. Preparing to unpack .../13-libpsl5_0.21.2-1+b1_armhf.deb ... Unpacking libpsl5:armhf (0.21.2-1+b1) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../14-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:armhf. Preparing to unpack .../15-libssh2-1_1.11.0-4_armhf.deb ... Unpacking libssh2-1:armhf (1.11.0-4) ... Selecting previously unselected package libcurl4:armhf. Preparing to unpack .../16-libcurl4_8.5.0-2_armhf.deb ... Unpacking libcurl4:armhf (8.5.0-2) ... Selecting previously unselected package libpfm4:armhf. Preparing to unpack .../17-libpfm4_4.13.0+git32-g0d4ed0e-1_armhf.deb ... Unpacking libpfm4:armhf (4.13.0+git32-g0d4ed0e-1) ... Selecting previously unselected package llvm-15. Preparing to unpack .../18-llvm-15_1%3a15.0.7-10_armhf.deb ... Unpacking llvm-15 (1:15.0.7-10) ... Selecting previously unselected package libgmpxx4ldbl:armhf. 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Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 24719 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.6-1_armhf.deb ... Unpacking python3-minimal (3.11.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. 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Preparing to unpack .../8-libpython3-stdlib_3.11.6-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.11.6-1) ... Setting up python3-minimal (3.11.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 25707 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.6-1_armhf.deb ... Unpacking python3 (3.11.6-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../03-libmagic1_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic1:armhf (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-2+b1_armhf.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-14+b1_armhf.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../06-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-3_armhf.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.39.3-6_armhf.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../09-libpipeline1_1.5.7-1+b2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1+b2) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.12.0-3_armhf.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../16-python3-pkg-resources_68.1.2-2_all.deb ... Unpacking python3-pkg-resources (68.1.2-2) ... Selecting previously unselected package python3-scour. Preparing to unpack .../17-python3-scour_0.38.2-4.1_all.deb ... Unpacking python3-scour (0.38.2-4.1) ... Selecting previously unselected package scour. Preparing to unpack .../18-scour_0.38.2-4.1_all.deb ... Unpacking scour (0.38.2-4.1) ... Selecting previously unselected package cdbs. Preparing to unpack .../19-cdbs_0.4.166_all.deb ... Unpacking cdbs (0.4.166) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../20-dctrl-tools_2.24-3_armhf.deb ... Unpacking dctrl-tools (2.24-3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../21-libdebhelper-perl_13.14.1_all.deb ... Unpacking libdebhelper-perl (13.14.1) ... Selecting previously unselected package libtool. Preparing to unpack .../22-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../23-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../24-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../25-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. 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Setting up dh-autoreconf (20) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libllvm15:armhf (1:15.0.7-10) ... Setting up libcurl4:armhf (8.5.0-2) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up llvm-15-linker-tools (1:15.0.7-10) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:armhf (3.11.8-1) ... Setting up libparams-classify-perl:armhf (0.015-2+b2) ... Setting up libcurl3-gnutls:armhf (8.5.0-2) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libmodule-runtime-perl (0.016-2) ... Setting up llvm-15-runtime (1:15.0.7-10) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libpython3-stdlib:armhf (3.11.6-1) ... Setting up python3.11 (3.11.8-1) ... Setting up llvm-15 (1:15.0.7-10) ... Setting up html-xml-utils (7.7-1.1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up ghc (9.4.7-3) ... update-alternatives: using /usr/bin/runghc to provide /usr/bin/runhaskell (runhaskell) in auto mode update-alternatives: using /usr/bin/ghc to provide /usr/bin/haskell-compiler (haskell-compiler) in auto mode Setting up libghc-prettyclass-dev (1.0.0.0-11+b1) ... Setting up libghc-src-exts-dev (1.23.1-4+b1) ... Setting up libghc-colour-dev (2.3.6-2+b1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up debhelper (13.14.1) ... Setting up python3 (3.11.6-1) ... Setting up libghc-unbounded-delays-dev (0.1.1.1-2+b1) ... Setting up libghc-split-dev (0.2.3.5-2+b1) ... Setting up libghc-base-compat-dev (0.12.3-1+b1) ... Setting up libghc-splitmix-dev (0.1.0.5-1+b1) ... Setting up libghc-polyparse-dev (1.13-3+b1) ... Setting up libghc-fgl-dev (5.8.1.1-1) ... Setting up dh-buildinfo (0.11+nmu2) ... Setting up libghc-transformers-compat-dev (0.7.2-1+b1) ... Setting up libghc-dlist-dev (1.0-3+b1) ... Setting up libghc-tagged-dev (0.8.7-1+b1) ... Setting up libghc-vector-stream-dev (0.1.0.0-2+b1) ... Setting up libghc-ansi-terminal-types-dev (0.11.5-2+b1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up libghc-hashable-dev (1.4.3.0-1+b1) ... Setting up libghc-ansi-terminal-dev (0.11.5-1+b1) ... Setting up libghc-call-stack-dev (0.4.0-2+b1) ... Setting up libghc-primitive-dev (0.8.0.0-1+b1) ... Setting up libghc-wl-pprint-text-dev (1.2.0.2-2+b1) ... Setting up libghc-hierarchical-clustering-dev (0.4.7-3+b1) ... Setting up libghc-random-dev (1.2.1.1-3+b2) ... Setting up libghc-temporary-dev (1.3-4+b1) ... Setting up libghc-ansi-wl-pprint-dev (0.6.9-6+b1) ... Setting up libghc-async-dev (2.2.4-4+b1) ... Setting up libghc-hunit-dev (1.6.2.0-2+b1) ... Setting up python3-scour (0.38.2-4.1) ... Setting up libghc-vector-dev (0.13.1.0-1) ... Setting up libghc-graphviz-dev (2999.20.1.0-2+b2) ... Setting up libghc-optparse-applicative-dev (0.17.1.0-1+b1) ... Setting up scour (0.38.2-4.1) ... Setting up cdbs (0.4.166) ... Setting up haskell-devscripts-minimal (0.16.33) ... Setting up libghc-tasty-dev (1.4.3-2+b1) ... Setting up haskell-devscripts (0.16.33) ... Setting up libghc-tasty-th-dev (0.1.7-6+b1) ... Setting up libghc-tasty-hunit-dev (0.10.1-1) ... Processing triggers for libc-bin (2.37-15) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/phybin-0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../phybin_0.3-6_source.changes dpkg-buildpackage: info: source package phybin dpkg-buildpackage: info: source version 0.3-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean test -x debian/rules dh_clean perl -d:Confess -MDebian::Debhelper::Buildsystem::Haskell::Recipes=/.*/ \ -E 'clean_recipe' Running rm -rf dist dist-ghc dist-ghcjs dist-hugs debian/tmp-setup-hs Running rm -f debian/hlibrary.setup Running rm -f Setup.hi Setup.ho Setup.o Running rm -f rm -f configure-ghc-stamp rm -f build-ghc-stamp build-hugs-stamp build-haddock-stamp rm -f check-ghc-stamp rm -f debian/tmp rm -rf debian/tmp-inst-ghc debian/tmp-inst-ghcjs rm -rf debian/tmp-db rm -f debian/hlibrary.Makefile debian/rules binary test -x debian/rules dh_testroot dh_prep dh_installdirs -A mkdir -p "." CDBS WARNING: DEB_DH_STRIP_ARGS is deprecated since 0.4.85 CDBS WARNING: DEB_COMPRESS_EXCLUDE is deprecated since 0.4.85 perl -d:Confess -MDebian::Debhelper::Buildsystem::Haskell::Recipes=/.*/ \ -E 'make_setup_recipe' Running ghc --make Setup.hs -o debian/hlibrary.setup [1 of 2] Compiling Main ( Setup.hs, Setup.o ) [2 of 2] Linking debian/hlibrary.setup perl -d:Confess -MDebian::Debhelper::Buildsystem::Haskell::Recipes=/.*/ \ -E 'configure_recipe' Running find . ! -newer /tmp/XGZov3w4Kz -exec touch -d 1998-01-01 UTC {} ; Running dh_listpackages phybin Running dh_listpackages phybin Running dpkg-buildflags --get LDFLAGS -Wl,-z,relro Running debian/hlibrary.setup configure --ghc -v2 --package-db=/var/lib/ghc/package.conf.d --prefix=/usr --libdir=/usr/lib/haskell-packages/ghc/lib --libexecdir=/usr/lib --builddir=dist-ghc --ghc-option=-optl-Wl,-z,relro --haddockdir=/usr/lib/ghc-doc/haddock/phybin-0.3/ --datasubdir=phybin --htmldir=/usr/share/doc/libghc-phybin-doc/html/ --enable-tests Running Setup.hs ... Using Parsec parser Configuring phybin-0.3... Flags chosen: bitvec=False, hashrf=True, sequential=False Dependency HUnit: using HUnit-1.6.2.0 Dependency async: using async-2.2.4 Dependency base >=3 && <5: using base-4.17.2.0 Dependency bytestring: using bytestring-0.11.5.2 Dependency containers: using containers-0.6.7 Dependency directory: using directory-1.3.7.1 Dependency fgl: using fgl-5.8.1.1 Dependency filepath: using filepath-1.4.2.2 Dependency graphviz >=2999.16: using graphviz-2999.20.1.0 Dependency hierarchical-clustering >=0.4: using hierarchical-clustering-0.4.7 Dependency parsec >=3.1.0: using parsec-3.1.16.1 Dependency prettyclass: using prettyclass-1.0.0.0 Dependency process: using process-1.6.17.0 Dependency split >=0.2: using split-0.2.3.5 Dependency text: using text-2.0.2 Dependency time: using time-1.12.2 Dependency vector >=0.10: using vector-0.13.1.0 Dependency HUnit: using HUnit-1.6.2.0 Dependency async: using async-2.2.4 Dependency base >=3 && <5: using base-4.17.2.0 Dependency bytestring: using bytestring-0.11.5.2 Dependency containers: using containers-0.6.7 Dependency directory: using directory-1.3.7.1 Dependency fgl: using fgl-5.8.1.1 Dependency filepath: using filepath-1.4.2.2 Dependency graphviz >=2999.16: using graphviz-2999.20.1.0 Dependency hierarchical-clustering >=0.4: using hierarchical-clustering-0.4.7 Dependency parsec >=3.1.0: using parsec-3.1.16.1 Dependency phybin: using phybin-0.3 Dependency prettyclass: using prettyclass-1.0.0.0 Dependency process: using process-1.6.17.0 Dependency split >=0.2: using split-0.2.3.5 Dependency text: using text-2.0.2 Dependency time: using time-1.12.2 Dependency vector >=0.10: using vector-0.13.1.0 Dependency HUnit: using HUnit-1.6.2.0 Dependency async: using async-2.2.4 Dependency base >=3 && <5: using base-4.17.2.0 Dependency bytestring: using bytestring-0.11.5.2 Dependency containers: using containers-0.6.7 Dependency directory: using directory-1.3.7.1 Dependency fgl: using fgl-5.8.1.1 Dependency filepath: using filepath-1.4.2.2 Dependency graphviz >=2999.16: using graphviz-2999.20.1.0 Dependency hierarchical-clustering >=0.4: using hierarchical-clustering-0.4.7 Dependency parsec >=3.1.0: using parsec-3.1.16.1 Dependency prettyclass: using prettyclass-1.0.0.0 Dependency process: using process-1.6.17.0 Dependency split >=0.2: using split-0.2.3.5 Dependency tasty-hunit: using tasty-hunit-0.10.1 Dependency tasty-th: using tasty-th-0.1.7 Dependency text: using text-2.0.2 Dependency time: using time-1.12.2 Dependency vector >=0.10: using vector-0.13.1.0 Source component graph: component test:test-phybin component lib component exe:phybin dependency lib Configured component graph: component phybin-0.3-Ak5bohSiHFT1ALpvm0SLvi-test-phybin include HUnit-1.6.2.0-3fsauNNRJvI5u5lqiyApf4 include async-2.2.4-7YK6w7dKbFeI6448E0Tdag include base-4.17.2.0 include bytestring-0.11.5.2 include containers-0.6.7 include directory-1.3.7.1 include fgl-5.8.1.1-3apCdMcu4KNHicKvMGsimh include filepath-1.4.2.2 include graphviz-2999.20.1.0-DE4upwxkbLgGBJgBadC4LH include hierarchical-clustering-0.4.7-6K3QkxvfntGG4eYoqmp0Bn include parsec-3.1.16.1 include prettyclass-1.0.0.0-C5HsbQrPuAU5VaQvb8pElQ include process-1.6.17.0 include split-0.2.3.5-6TG3Ehlfnn5FFj6s8WeQj include tasty-hunit-0.10.1-AuM9CY3VjPR5SvtaT4vc79 include tasty-th-0.1.7-5bY6q5mJZtPDSyIgacPTyp include text-2.0.2 include time-1.12.2 include vector-0.13.1.0-E4LTjcK991m18cbKZhUjhX component phybin-0.3-1J8DVkYI0hwDTHyYCQwsD4 include HUnit-1.6.2.0-3fsauNNRJvI5u5lqiyApf4 include async-2.2.4-7YK6w7dKbFeI6448E0Tdag include base-4.17.2.0 include bytestring-0.11.5.2 include containers-0.6.7 include directory-1.3.7.1 include fgl-5.8.1.1-3apCdMcu4KNHicKvMGsimh include filepath-1.4.2.2 include graphviz-2999.20.1.0-DE4upwxkbLgGBJgBadC4LH include hierarchical-clustering-0.4.7-6K3QkxvfntGG4eYoqmp0Bn include parsec-3.1.16.1 include prettyclass-1.0.0.0-C5HsbQrPuAU5VaQvb8pElQ include process-1.6.17.0 include split-0.2.3.5-6TG3Ehlfnn5FFj6s8WeQj include text-2.0.2 include time-1.12.2 include vector-0.13.1.0-E4LTjcK991m18cbKZhUjhX component phybin-0.3-HNhHx8mgZGz4Elq0o2GNJb-phybin include HUnit-1.6.2.0-3fsauNNRJvI5u5lqiyApf4 include async-2.2.4-7YK6w7dKbFeI6448E0Tdag include base-4.17.2.0 include bytestring-0.11.5.2 include containers-0.6.7 include directory-1.3.7.1 include fgl-5.8.1.1-3apCdMcu4KNHicKvMGsimh include filepath-1.4.2.2 include graphviz-2999.20.1.0-DE4upwxkbLgGBJgBadC4LH include hierarchical-clustering-0.4.7-6K3QkxvfntGG4eYoqmp0Bn include parsec-3.1.16.1 include phybin-0.3-1J8DVkYI0hwDTHyYCQwsD4 include prettyclass-1.0.0.0-C5HsbQrPuAU5VaQvb8pElQ include process-1.6.17.0 include split-0.2.3.5-6TG3Ehlfnn5FFj6s8WeQj include text-2.0.2 include time-1.12.2 include vector-0.13.1.0-E4LTjcK991m18cbKZhUjhX Linked component graph: unit phybin-0.3-Ak5bohSiHFT1ALpvm0SLvi-test-phybin include HUnit-1.6.2.0-3fsauNNRJvI5u5lqiyApf4 include async-2.2.4-7YK6w7dKbFeI6448E0Tdag include base-4.17.2.0 include bytestring-0.11.5.2 include containers-0.6.7 include directory-1.3.7.1 include fgl-5.8.1.1-3apCdMcu4KNHicKvMGsimh include filepath-1.4.2.2 include graphviz-2999.20.1.0-DE4upwxkbLgGBJgBadC4LH include hierarchical-clustering-0.4.7-6K3QkxvfntGG4eYoqmp0Bn include parsec-3.1.16.1 include prettyclass-1.0.0.0-C5HsbQrPuAU5VaQvb8pElQ include process-1.6.17.0 include split-0.2.3.5-6TG3Ehlfnn5FFj6s8WeQj include tasty-hunit-0.10.1-AuM9CY3VjPR5SvtaT4vc79 include tasty-th-0.1.7-5bY6q5mJZtPDSyIgacPTyp include text-2.0.2 include time-1.12.2 include vector-0.13.1.0-E4LTjcK991m18cbKZhUjhX unit phybin-0.3-1J8DVkYI0hwDTHyYCQwsD4 include HUnit-1.6.2.0-3fsauNNRJvI5u5lqiyApf4 include async-2.2.4-7YK6w7dKbFeI6448E0Tdag include base-4.17.2.0 include bytestring-0.11.5.2 include containers-0.6.7 include directory-1.3.7.1 include fgl-5.8.1.1-3apCdMcu4KNHicKvMGsimh include filepath-1.4.2.2 include graphviz-2999.20.1.0-DE4upwxkbLgGBJgBadC4LH include hierarchical-clustering-0.4.7-6K3QkxvfntGG4eYoqmp0Bn include parsec-3.1.16.1 include prettyclass-1.0.0.0-C5HsbQrPuAU5VaQvb8pElQ include process-1.6.17.0 include split-0.2.3.5-6TG3Ehlfnn5FFj6s8WeQj include text-2.0.2 include time-1.12.2 include vector-0.13.1.0-E4LTjcK991m18cbKZhUjhX Bio.Phylogeny.PhyBin=phybin-0.3-1J8DVkYI0hwDTHyYCQwsD4:Bio.Phylogeny.PhyBin,Bio.Phylogeny.PhyBin.Binning=phybin-0.3-1J8DVkYI0hwDTHyYCQwsD4:Bio.Phylogeny.PhyBin.Binning,Bio.Phylogeny.PhyBin.CoreTypes=phybin-0.3-1J8DVkYI0hwDTHyYCQwsD4:Bio.Phylogeny.PhyBin.CoreTypes,Bio.Phylogeny.PhyBin.Parser=phybin-0.3-1J8DVkYI0hwDTHyYCQwsD4:Bio.Phylogeny.PhyBin.Parser,Bio.Phylogeny.PhyBin.PreProcessor=phybin-0.3-1J8DVkYI0hwDTHyYCQwsD4:Bio.Phylogeny.PhyBin.PreProcessor,Bio.Phylogeny.PhyBin.RFDistance=phybin-0.3-1J8DVkYI0hwDTHyYCQwsD4:Bio.Phylogeny.PhyBin.RFDistance,Bio.Phylogeny.PhyBin.Util=phybin-0.3-1J8DVkYI0hwDTHyYCQwsD4:Bio.Phylogeny.PhyBin.Util,Bio.Phylogeny.PhyBin.Visualize=phybin-0.3-1J8DVkYI0hwDTHyYCQwsD4:Bio.Phylogeny.PhyBin.Visualize unit phybin-0.3-HNhHx8mgZGz4Elq0o2GNJb-phybin include HUnit-1.6.2.0-3fsauNNRJvI5u5lqiyApf4 include async-2.2.4-7YK6w7dKbFeI6448E0Tdag include base-4.17.2.0 include bytestring-0.11.5.2 include containers-0.6.7 include directory-1.3.7.1 include fgl-5.8.1.1-3apCdMcu4KNHicKvMGsimh include filepath-1.4.2.2 include graphviz-2999.20.1.0-DE4upwxkbLgGBJgBadC4LH include hierarchical-clustering-0.4.7-6K3QkxvfntGG4eYoqmp0Bn include parsec-3.1.16.1 include phybin-0.3-1J8DVkYI0hwDTHyYCQwsD4 include prettyclass-1.0.0.0-C5HsbQrPuAU5VaQvb8pElQ include process-1.6.17.0 include split-0.2.3.5-6TG3Ehlfnn5FFj6s8WeQj include text-2.0.2 include time-1.12.2 include vector-0.13.1.0-E4LTjcK991m18cbKZhUjhX Ready component graph: definite phybin-0.3-Ak5bohSiHFT1ALpvm0SLvi-test-phybin depends HUnit-1.6.2.0-3fsauNNRJvI5u5lqiyApf4 depends async-2.2.4-7YK6w7dKbFeI6448E0Tdag depends base-4.17.2.0 depends bytestring-0.11.5.2 depends containers-0.6.7 depends directory-1.3.7.1 depends fgl-5.8.1.1-3apCdMcu4KNHicKvMGsimh depends filepath-1.4.2.2 depends graphviz-2999.20.1.0-DE4upwxkbLgGBJgBadC4LH depends hierarchical-clustering-0.4.7-6K3QkxvfntGG4eYoqmp0Bn depends parsec-3.1.16.1 depends prettyclass-1.0.0.0-C5HsbQrPuAU5VaQvb8pElQ depends process-1.6.17.0 depends split-0.2.3.5-6TG3Ehlfnn5FFj6s8WeQj depends tasty-hunit-0.10.1-AuM9CY3VjPR5SvtaT4vc79 depends tasty-th-0.1.7-5bY6q5mJZtPDSyIgacPTyp depends text-2.0.2 depends time-1.12.2 depends vector-0.13.1.0-E4LTjcK991m18cbKZhUjhX definite phybin-0.3-1J8DVkYI0hwDTHyYCQwsD4 depends HUnit-1.6.2.0-3fsauNNRJvI5u5lqiyApf4 depends async-2.2.4-7YK6w7dKbFeI6448E0Tdag depends base-4.17.2.0 depends bytestring-0.11.5.2 depends containers-0.6.7 depends directory-1.3.7.1 depends fgl-5.8.1.1-3apCdMcu4KNHicKvMGsimh depends filepath-1.4.2.2 depends graphviz-2999.20.1.0-DE4upwxkbLgGBJgBadC4LH depends hierarchical-clustering-0.4.7-6K3QkxvfntGG4eYoqmp0Bn depends parsec-3.1.16.1 depends prettyclass-1.0.0.0-C5HsbQrPuAU5VaQvb8pElQ depends process-1.6.17.0 depends split-0.2.3.5-6TG3Ehlfnn5FFj6s8WeQj depends text-2.0.2 depends time-1.12.2 depends vector-0.13.1.0-E4LTjcK991m18cbKZhUjhX definite phybin-0.3-HNhHx8mgZGz4Elq0o2GNJb-phybin depends HUnit-1.6.2.0-3fsauNNRJvI5u5lqiyApf4 depends async-2.2.4-7YK6w7dKbFeI6448E0Tdag depends base-4.17.2.0 depends bytestring-0.11.5.2 depends containers-0.6.7 depends directory-1.3.7.1 depends fgl-5.8.1.1-3apCdMcu4KNHicKvMGsimh depends filepath-1.4.2.2 depends graphviz-2999.20.1.0-DE4upwxkbLgGBJgBadC4LH depends hierarchical-clustering-0.4.7-6K3QkxvfntGG4eYoqmp0Bn depends parsec-3.1.16.1 depends phybin-0.3-1J8DVkYI0hwDTHyYCQwsD4 depends prettyclass-1.0.0.0-C5HsbQrPuAU5VaQvb8pElQ depends process-1.6.17.0 depends split-0.2.3.5-6TG3Ehlfnn5FFj6s8WeQj depends text-2.0.2 depends time-1.12.2 depends vector-0.13.1.0-E4LTjcK991m18cbKZhUjhX Using Cabal-3.8.1.0 compiled by ghc-9.4 Using compiler: ghc-9.4.7 Using install prefix: /usr Executables installed in: /usr/bin Libraries installed in: /usr/lib/haskell-packages/ghc/lib/arm-linux-ghc-9.4.7/phybin-0.3-1J8DVkYI0hwDTHyYCQwsD4 Dynamic Libraries installed in: /usr/lib/haskell-packages/ghc/lib/arm-linux-ghc-9.4.7 Private executables installed in: /usr/lib/arm-linux-ghc-9.4.7/phybin-0.3 Data files installed in: /usr/share/phybin Documentation installed in: /usr/share/doc/arm-linux-ghc-9.4.7/phybin-0.3 Configuration files installed in: /usr/etc No alex found Using ar found on system at: /usr/bin/arm-linux-gnueabihf-ar No c2hs found No cpphs found No doctest found Using gcc version 13 found on system at: /usr/bin/arm-linux-gnueabihf-gcc Using ghc version 9.4.7 found on system at: /usr/bin/ghc Using ghc-pkg version 9.4.7 found on system at: /usr/bin/ghc-pkg-9.4.7 No ghcjs found No ghcjs-pkg found No greencard found Using haddock version 2.27.0 found on system at: /usr/bin/haddock-ghc-9.4.7 No happy found Using haskell-suite found on system at: haskell-suite-dummy-location Using haskell-suite-pkg found on system at: haskell-suite-pkg-dummy-location No hmake found Using hpc version 0.68 found on system at: /usr/bin/hpc-ghc-9.4.7 Using hsc2hs version 0.68.8 found on system at: /usr/bin/hsc2hs-ghc-9.4.7 Using hscolour version 1.24 found on system at: /usr/bin/HsColour No jhc found Using ld found on system at: /usr/bin/arm-linux-gnueabihf-ld.gold No pkg-config found Using runghc version 9.4.7 found on system at: /usr/bin/runghc-9.4.7 Using strip version 2.42 found on system at: /usr/bin/strip Using tar found on system at: /usr/bin/tar No uhc found touch configure-ghc-stamp perl -d:Confess -MDebian::Debhelper::Buildsystem::Haskell::Recipes=/.*/ \ -E 'build_recipe' Running dh_listpackages phybin Running Setup.hs ... Preprocessing test suite 'test-phybin' for phybin-0.3.. Building test suite 'test-phybin' for phybin-0.3.. : warning: [-Wmissing-home-modules] These modules are needed for compilation but not listed in your .cabal file's other-modules for `main' : Bio.Phylogeny.PhyBin Bio.Phylogeny.PhyBin.Binning Bio.Phylogeny.PhyBin.CoreTypes Bio.Phylogeny.PhyBin.Parser Bio.Phylogeny.PhyBin.PreProcessor Bio.Phylogeny.PhyBin.RFDistance Bio.Phylogeny.PhyBin.Util Bio.Phylogeny.PhyBin.Visualize [1 of 9] Compiling Bio.Phylogeny.PhyBin.CoreTypes ( Bio/Phylogeny/PhyBin/CoreTypes.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/CoreTypes.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/CoreTypes.dyn_o ) Bio/Phylogeny/PhyBin/CoreTypes.hs:37:1: warning: [-Wunused-imports] The qualified import of `Data.Set' is redundant except perhaps to import instances from `Data.Set' To import instances alone, use: import Data.Set() | 37 | import qualified Data.Set as S | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin/CoreTypes.hs:38:1: warning: [-Wunused-imports] The import of `Data.Foldable' is redundant except perhaps to import instances from `Data.Foldable' To import instances alone, use: import Data.Foldable() | 38 | import Data.Foldable (Foldable(..)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1: warning: [-Wunused-imports] The import of `Data.Monoid' is redundant except perhaps to import instances from `Data.Monoid' To import instances alone, use: import Data.Monoid() | 40 | import Data.Monoid (mappend, mconcat) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [2 of 9] Compiling Bio.Phylogeny.PhyBin.Parser ( Bio/Phylogeny/PhyBin/Parser.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Parser.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Parser.dyn_o ) Bio/Phylogeny/PhyBin/Parser.hs:81:1: warning: [-Wtabs] Tab character found here, and in five further locations. Suggested fix: Please use spaces instead. | 81 | Left err -> error ("parse error in file "++ show file ++" at "++ show err) | ^^^^^^^^ Bio/Phylogeny/PhyBin/Parser.hs:98:4: warning: [-Wincomplete-patterns] Pattern match(es) are non-exhaustive In an equation for `loop2': Patterns of type `Map a Label', `Map Int a', `NewickTree (a, Maybe a1)' not matched: _ _ (NTLeaf (_, Nothing) _) _ _ (NTInterior (_, (Just _)) _) | 98 | loop2 seen acc (NTLeaf (d,Just nm) _) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^... Bio/Phylogeny/PhyBin/Parser.hs:122:3: warning: [-Wincomplete-patterns] Pattern match(es) are non-exhaustive In a case alternative: Patterns of type `NewickTree (DefDecor, Maybe String)' not matched: NTInterior (_, (Just _)) _ | 122 | case s of | ^^^^^^^^^^... [3 of 9] Compiling Bio.Phylogeny.PhyBin.PreProcessor ( Bio/Phylogeny/PhyBin/PreProcessor.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/PreProcessor.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/PreProcessor.dyn_o ) [4 of 9] Compiling Bio.Phylogeny.PhyBin.RFDistance ( Bio/Phylogeny/PhyBin/RFDistance.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/RFDistance.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/RFDistance.dyn_o ) Bio/Phylogeny/PhyBin/RFDistance.hs:437:21: warning: [-Woperator-whitespace-ext-conflict] The prefix use of a `$' would denote an untyped splice were the TemplateHaskell extension enabled. Suggested fix: Add whitespace after the `$'. | 437 | [] -> error $"bipsToTree: Internal error! No match for bip: "++show bip | ^ [5 of 9] Compiling Bio.Phylogeny.PhyBin.Util ( Bio/Phylogeny/PhyBin/Util.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Util.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Util.dyn_o ) Bio/Phylogeny/PhyBin/Util.hs:97:1: warning: [-Wtabs] Tab character found here, and in 13 further locations. Suggested fix: Please use spaces instead. | 97 | -- hPutStr stderr$ "Input not a file/directory, assuming wildcard, using 'find' for expansion" | ^^^^^^^^ [6 of 9] Compiling Bio.Phylogeny.PhyBin.Visualize ( Bio/Phylogeny/PhyBin/Visualize.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Visualize.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Visualize.dyn_o ) Bio/Phylogeny/PhyBin/Visualize.hs:247:1: warning: [-Wtabs] Tab character found here, and in 29 further locations. Suggested fix: Please use spaces instead. | 247 | tree | ^^^^^^^^ [7 of 9] Compiling Bio.Phylogeny.PhyBin.Binning ( Bio/Phylogeny/PhyBin/Binning.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Binning.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Binning.dyn_o ) Bio/Phylogeny/PhyBin/Binning.hs:22:1: warning: [-Wunused-imports] The import of `Control.Applicative' is redundant except perhaps to import instances from `Control.Applicative' To import instances alone, use: import Control.Applicative() | 22 | import Control.Applicative ((<$>),(<*>)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin/Binning.hs:60:1: warning: [-Wtabs] Tab character found here, and in 58 further locations. Suggested fix: Please use spaces instead. | 60 | ++ "Pretty printing:\n " | ^^^^^^^^ [8 of 9] Compiling Bio.Phylogeny.PhyBin ( Bio/Phylogeny/PhyBin.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin.dyn_o ) Bio/Phylogeny/PhyBin.hs:17:1: warning: [-Wunused-imports] The import of `delete, intersperse, minimumBy' from module `Data.List' is redundant | 17 | import Data.List (delete, minimumBy, sortBy, foldl1', foldl', intersperse, isPrefixOf) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:28:52: warning: [-Wunused-imports] The import of `filterM' from module `Control.Monad' is redundant | 28 | import Control.Monad (forM, forM_, filterM, when, unless) | ^^^^^^^ Bio/Phylogeny/PhyBin.hs:31:1: warning: [-Wunused-imports] The import of `Control.Applicative' is redundant except perhaps to import instances from `Control.Applicative' To import instances alone, use: import Control.Applicative() | 31 | import Control.Applicative ((<$>),(<*>)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:32:1: warning: [-Wunused-imports] The import of `Control.Concurrent' is redundant except perhaps to import instances from `Control.Concurrent' To import instances alone, use: import Control.Concurrent() | 32 | import Control.Concurrent (Chan) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:35:1: warning: [-Wunused-imports] The import of `doesFileExist, getDirectoryContents' from module `System.Directory' is redundant | 35 | import System.Directory (doesFileExist, doesDirectoryExist, createDirectoryIfMissing, | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^... Bio/Phylogeny/PhyBin.hs:37:1: warning: [-Wunused-imports] The import of `hClose, openFile' from module `System.IO' is redundant | 37 | import System.IO (openFile, hClose, IOMode(..), stdout, withFile) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:40:1: warning: [-Wunused-imports] The import of `System.Exit' is redundant except perhaps to import instances from `System.Exit' To import instances alone, use: import System.Exit() | 40 | import System.Exit (ExitCode(..)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:41:1: warning: [-Wunused-imports] The import of `Test.HUnit' is redundant except perhaps to import instances from `Test.HUnit' To import instances alone, use: import Test.HUnit() | 41 | import Test.HUnit ((~:),(~=?),Test,test) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:43:1: warning: [-Wunused-imports] The qualified import of `Data.GraphViz' is redundant except perhaps to import instances from `Data.GraphViz' To import instances alone, use: import Data.GraphViz() | 43 | import qualified Data.GraphViz as Gv | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:47:1: warning: [-Wunused-imports] The import of `Data.GraphViz.Printing' is redundant except perhaps to import instances from `Data.GraphViz.Printing' To import instances alone, use: import Data.GraphViz.Printing() | 47 | import Data.GraphViz.Printing (renderDot) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:52:75: warning: [-Wunused-imports] The import of `viewNewickTree' from module `Bio.Phylogeny.PhyBin.Visualize' is redundant | 52 | import Bio.Phylogeny.PhyBin.Visualize (dotToPDF, dotNewickTree, viewNewickTree, dotDendrogram) | ^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:120:3: warning: [-Wtabs] Tab character found here, and in 25 further locations. Suggested fix: Please use spaces instead. | 120 | if reg | ^^^^^^ [9 of 9] Compiling Main ( TestAll.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Main.o, dist-ghc/build/test-phybin/test-phybin-tmp/Main.dyn_o ) : warning: [-Wmissing-home-modules] These modules are needed for compilation but not listed in your .cabal file's other-modules for `main' : Bio.Phylogeny.PhyBin Bio.Phylogeny.PhyBin.Binning Bio.Phylogeny.PhyBin.CoreTypes Bio.Phylogeny.PhyBin.Parser Bio.Phylogeny.PhyBin.PreProcessor Bio.Phylogeny.PhyBin.RFDistance Bio.Phylogeny.PhyBin.Util Bio.Phylogeny.PhyBin.Visualize [10 of 10] Linking dist-ghc/build/test-phybin/test-phybin Preprocessing library for phybin-0.3.. Building library for phybin-0.3.. [1 of 8] Compiling Bio.Phylogeny.PhyBin.CoreTypes ( Bio/Phylogeny/PhyBin/CoreTypes.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/CoreTypes.o, dist-ghc/build/Bio/Phylogeny/PhyBin/CoreTypes.dyn_o ) Bio/Phylogeny/PhyBin/CoreTypes.hs:37:1: warning: [-Wunused-imports] The qualified import of `Data.Set' is redundant except perhaps to import instances from `Data.Set' To import instances alone, use: import Data.Set() | 37 | import qualified Data.Set as S | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin/CoreTypes.hs:38:1: warning: [-Wunused-imports] The import of `Data.Foldable' is redundant except perhaps to import instances from `Data.Foldable' To import instances alone, use: import Data.Foldable() | 38 | import Data.Foldable (Foldable(..)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1: warning: [-Wunused-imports] The import of `Data.Monoid' is redundant except perhaps to import instances from `Data.Monoid' To import instances alone, use: import Data.Monoid() | 40 | import Data.Monoid (mappend, mconcat) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [2 of 8] Compiling Bio.Phylogeny.PhyBin.Parser ( Bio/Phylogeny/PhyBin/Parser.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Parser.o, dist-ghc/build/Bio/Phylogeny/PhyBin/Parser.dyn_o ) Bio/Phylogeny/PhyBin/Parser.hs:81:1: warning: [-Wtabs] Tab character found here, and in five further locations. Suggested fix: Please use spaces instead. | 81 | Left err -> error ("parse error in file "++ show file ++" at "++ show err) | ^^^^^^^^ Bio/Phylogeny/PhyBin/Parser.hs:98:4: warning: [-Wincomplete-patterns] Pattern match(es) are non-exhaustive In an equation for `loop2': Patterns of type `Map a Label', `Map Int a', `NewickTree (a, Maybe a1)' not matched: _ _ (NTLeaf (_, Nothing) _) _ _ (NTInterior (_, (Just _)) _) | 98 | loop2 seen acc (NTLeaf (d,Just nm) _) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^... Bio/Phylogeny/PhyBin/Parser.hs:122:3: warning: [-Wincomplete-patterns] Pattern match(es) are non-exhaustive In a case alternative: Patterns of type `NewickTree (DefDecor, Maybe String)' not matched: NTInterior (_, (Just _)) _ | 122 | case s of | ^^^^^^^^^^... [3 of 8] Compiling Bio.Phylogeny.PhyBin.PreProcessor ( Bio/Phylogeny/PhyBin/PreProcessor.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/PreProcessor.o, dist-ghc/build/Bio/Phylogeny/PhyBin/PreProcessor.dyn_o ) [4 of 8] Compiling Bio.Phylogeny.PhyBin.RFDistance ( Bio/Phylogeny/PhyBin/RFDistance.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/RFDistance.o, dist-ghc/build/Bio/Phylogeny/PhyBin/RFDistance.dyn_o ) Bio/Phylogeny/PhyBin/RFDistance.hs:437:21: warning: [-Woperator-whitespace-ext-conflict] The prefix use of a `$' would denote an untyped splice were the TemplateHaskell extension enabled. Suggested fix: Add whitespace after the `$'. | 437 | [] -> error $"bipsToTree: Internal error! No match for bip: "++show bip | ^ [5 of 8] Compiling Bio.Phylogeny.PhyBin.Util ( Bio/Phylogeny/PhyBin/Util.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Util.o, dist-ghc/build/Bio/Phylogeny/PhyBin/Util.dyn_o ) Bio/Phylogeny/PhyBin/Util.hs:97:1: warning: [-Wtabs] Tab character found here, and in 13 further locations. Suggested fix: Please use spaces instead. | 97 | -- hPutStr stderr$ "Input not a file/directory, assuming wildcard, using 'find' for expansion" | ^^^^^^^^ [6 of 8] Compiling Bio.Phylogeny.PhyBin.Visualize ( Bio/Phylogeny/PhyBin/Visualize.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Visualize.o, dist-ghc/build/Bio/Phylogeny/PhyBin/Visualize.dyn_o ) Bio/Phylogeny/PhyBin/Visualize.hs:247:1: warning: [-Wtabs] Tab character found here, and in 29 further locations. Suggested fix: Please use spaces instead. | 247 | tree | ^^^^^^^^ [7 of 8] Compiling Bio.Phylogeny.PhyBin.Binning ( Bio/Phylogeny/PhyBin/Binning.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/Binning.o, dist-ghc/build/Bio/Phylogeny/PhyBin/Binning.dyn_o ) Bio/Phylogeny/PhyBin/Binning.hs:22:1: warning: [-Wunused-imports] The import of `Control.Applicative' is redundant except perhaps to import instances from `Control.Applicative' To import instances alone, use: import Control.Applicative() | 22 | import Control.Applicative ((<$>),(<*>)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin/Binning.hs:60:1: warning: [-Wtabs] Tab character found here, and in 58 further locations. Suggested fix: Please use spaces instead. | 60 | ++ "Pretty printing:\n " | ^^^^^^^^ [8 of 8] Compiling Bio.Phylogeny.PhyBin ( Bio/Phylogeny/PhyBin.hs, dist-ghc/build/Bio/Phylogeny/PhyBin.o, dist-ghc/build/Bio/Phylogeny/PhyBin.dyn_o ) Bio/Phylogeny/PhyBin.hs:17:1: warning: [-Wunused-imports] The import of `delete, intersperse, minimumBy' from module `Data.List' is redundant | 17 | import Data.List (delete, minimumBy, sortBy, foldl1', foldl', intersperse, isPrefixOf) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:28:52: warning: [-Wunused-imports] The import of `filterM' from module `Control.Monad' is redundant | 28 | import Control.Monad (forM, forM_, filterM, when, unless) | ^^^^^^^ Bio/Phylogeny/PhyBin.hs:31:1: warning: [-Wunused-imports] The import of `Control.Applicative' is redundant except perhaps to import instances from `Control.Applicative' To import instances alone, use: import Control.Applicative() | 31 | import Control.Applicative ((<$>),(<*>)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:32:1: warning: [-Wunused-imports] The import of `Control.Concurrent' is redundant except perhaps to import instances from `Control.Concurrent' To import instances alone, use: import Control.Concurrent() | 32 | import Control.Concurrent (Chan) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:35:1: warning: [-Wunused-imports] The import of `doesFileExist, getDirectoryContents' from module `System.Directory' is redundant | 35 | import System.Directory (doesFileExist, doesDirectoryExist, createDirectoryIfMissing, | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^... Bio/Phylogeny/PhyBin.hs:37:1: warning: [-Wunused-imports] The import of `hClose, openFile' from module `System.IO' is redundant | 37 | import System.IO (openFile, hClose, IOMode(..), stdout, withFile) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:40:1: warning: [-Wunused-imports] The import of `System.Exit' is redundant except perhaps to import instances from `System.Exit' To import instances alone, use: import System.Exit() | 40 | import System.Exit (ExitCode(..)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:41:1: warning: [-Wunused-imports] The import of `Test.HUnit' is redundant except perhaps to import instances from `Test.HUnit' To import instances alone, use: import Test.HUnit() | 41 | import Test.HUnit ((~:),(~=?),Test,test) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:43:1: warning: [-Wunused-imports] The qualified import of `Data.GraphViz' is redundant except perhaps to import instances from `Data.GraphViz' To import instances alone, use: import Data.GraphViz() | 43 | import qualified Data.GraphViz as Gv | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:47:1: warning: [-Wunused-imports] The import of `Data.GraphViz.Printing' is redundant except perhaps to import instances from `Data.GraphViz.Printing' To import instances alone, use: import Data.GraphViz.Printing() | 47 | import Data.GraphViz.Printing (renderDot) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:52:75: warning: [-Wunused-imports] The import of `viewNewickTree' from module `Bio.Phylogeny.PhyBin.Visualize' is redundant | 52 | import Bio.Phylogeny.PhyBin.Visualize (dotToPDF, dotNewickTree, viewNewickTree, dotDendrogram) | ^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:120:3: warning: [-Wtabs] Tab character found here, and in 25 further locations. Suggested fix: Please use spaces instead. | 120 | if reg | ^^^^^^ Preprocessing executable 'phybin' for phybin-0.3.. Building executable 'phybin' for phybin-0.3.. : warning: [-Wmissing-home-modules] These modules are needed for compilation but not listed in your .cabal file's other-modules for `main' : Bio.Phylogeny.PhyBin Bio.Phylogeny.PhyBin.Binning Bio.Phylogeny.PhyBin.CoreTypes Bio.Phylogeny.PhyBin.Parser Bio.Phylogeny.PhyBin.PreProcessor Bio.Phylogeny.PhyBin.RFDistance Bio.Phylogeny.PhyBin.Util Bio.Phylogeny.PhyBin.Visualize Paths_phybin [ 1 of 10] Compiling Bio.Phylogeny.PhyBin.CoreTypes ( Bio/Phylogeny/PhyBin/CoreTypes.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/CoreTypes.o ) Bio/Phylogeny/PhyBin/CoreTypes.hs:37:1: warning: [-Wunused-imports] The qualified import of `Data.Set' is redundant except perhaps to import instances from `Data.Set' To import instances alone, use: import Data.Set() | 37 | import qualified Data.Set as S | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin/CoreTypes.hs:38:1: warning: [-Wunused-imports] The import of `Data.Foldable' is redundant except perhaps to import instances from `Data.Foldable' To import instances alone, use: import Data.Foldable() | 38 | import Data.Foldable (Foldable(..)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1: warning: [-Wunused-imports] The import of `Data.Monoid' is redundant except perhaps to import instances from `Data.Monoid' To import instances alone, use: import Data.Monoid() | 40 | import Data.Monoid (mappend, mconcat) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [ 2 of 10] Compiling Bio.Phylogeny.PhyBin.Parser ( Bio/Phylogeny/PhyBin/Parser.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Parser.o ) Bio/Phylogeny/PhyBin/Parser.hs:81:1: warning: [-Wtabs] Tab character found here, and in five further locations. Suggested fix: Please use spaces instead. | 81 | Left err -> error ("parse error in file "++ show file ++" at "++ show err) | ^^^^^^^^ Bio/Phylogeny/PhyBin/Parser.hs:98:4: warning: [-Wincomplete-patterns] Pattern match(es) are non-exhaustive In an equation for `loop2': Patterns of type `Map a Label', `Map Int a', `NewickTree (a, Maybe a1)' not matched: _ _ (NTLeaf (_, Nothing) _) _ _ (NTInterior (_, (Just _)) _) | 98 | loop2 seen acc (NTLeaf (d,Just nm) _) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^... Bio/Phylogeny/PhyBin/Parser.hs:122:3: warning: [-Wincomplete-patterns] Pattern match(es) are non-exhaustive In a case alternative: Patterns of type `NewickTree (DefDecor, Maybe String)' not matched: NTInterior (_, (Just _)) _ | 122 | case s of | ^^^^^^^^^^... [ 3 of 10] Compiling Bio.Phylogeny.PhyBin.PreProcessor ( Bio/Phylogeny/PhyBin/PreProcessor.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/PreProcessor.o ) [ 4 of 10] Compiling Bio.Phylogeny.PhyBin.RFDistance ( Bio/Phylogeny/PhyBin/RFDistance.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/RFDistance.o ) Bio/Phylogeny/PhyBin/RFDistance.hs:437:21: warning: [-Woperator-whitespace-ext-conflict] The prefix use of a `$' would denote an untyped splice were the TemplateHaskell extension enabled. Suggested fix: Add whitespace after the `$'. | 437 | [] -> error $"bipsToTree: Internal error! No match for bip: "++show bip | ^ [ 5 of 10] Compiling Bio.Phylogeny.PhyBin.Util ( Bio/Phylogeny/PhyBin/Util.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Util.o ) Bio/Phylogeny/PhyBin/Util.hs:97:1: warning: [-Wtabs] Tab character found here, and in 13 further locations. Suggested fix: Please use spaces instead. | 97 | -- hPutStr stderr$ "Input not a file/directory, assuming wildcard, using 'find' for expansion" | ^^^^^^^^ [ 6 of 10] Compiling Bio.Phylogeny.PhyBin.Visualize ( Bio/Phylogeny/PhyBin/Visualize.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Visualize.o ) Bio/Phylogeny/PhyBin/Visualize.hs:247:1: warning: [-Wtabs] Tab character found here, and in 29 further locations. Suggested fix: Please use spaces instead. | 247 | tree | ^^^^^^^^ [ 7 of 10] Compiling Bio.Phylogeny.PhyBin.Binning ( Bio/Phylogeny/PhyBin/Binning.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin/Binning.o ) Bio/Phylogeny/PhyBin/Binning.hs:22:1: warning: [-Wunused-imports] The import of `Control.Applicative' is redundant except perhaps to import instances from `Control.Applicative' To import instances alone, use: import Control.Applicative() | 22 | import Control.Applicative ((<$>),(<*>)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin/Binning.hs:60:1: warning: [-Wtabs] Tab character found here, and in 58 further locations. Suggested fix: Please use spaces instead. | 60 | ++ "Pretty printing:\n " | ^^^^^^^^ [ 8 of 10] Compiling Bio.Phylogeny.PhyBin ( Bio/Phylogeny/PhyBin.hs, dist-ghc/build/phybin/phybin-tmp/Bio/Phylogeny/PhyBin.o ) Bio/Phylogeny/PhyBin.hs:17:1: warning: [-Wunused-imports] The import of `delete, intersperse, minimumBy' from module `Data.List' is redundant | 17 | import Data.List (delete, minimumBy, sortBy, foldl1', foldl', intersperse, isPrefixOf) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:28:52: warning: [-Wunused-imports] The import of `filterM' from module `Control.Monad' is redundant | 28 | import Control.Monad (forM, forM_, filterM, when, unless) | ^^^^^^^ Bio/Phylogeny/PhyBin.hs:31:1: warning: [-Wunused-imports] The import of `Control.Applicative' is redundant except perhaps to import instances from `Control.Applicative' To import instances alone, use: import Control.Applicative() | 31 | import Control.Applicative ((<$>),(<*>)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:32:1: warning: [-Wunused-imports] The import of `Control.Concurrent' is redundant except perhaps to import instances from `Control.Concurrent' To import instances alone, use: import Control.Concurrent() | 32 | import Control.Concurrent (Chan) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:35:1: warning: [-Wunused-imports] The import of `doesFileExist, getDirectoryContents' from module `System.Directory' is redundant | 35 | import System.Directory (doesFileExist, doesDirectoryExist, createDirectoryIfMissing, | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^... Bio/Phylogeny/PhyBin.hs:37:1: warning: [-Wunused-imports] The import of `hClose, openFile' from module `System.IO' is redundant | 37 | import System.IO (openFile, hClose, IOMode(..), stdout, withFile) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:40:1: warning: [-Wunused-imports] The import of `System.Exit' is redundant except perhaps to import instances from `System.Exit' To import instances alone, use: import System.Exit() | 40 | import System.Exit (ExitCode(..)) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:41:1: warning: [-Wunused-imports] The import of `Test.HUnit' is redundant except perhaps to import instances from `Test.HUnit' To import instances alone, use: import Test.HUnit() | 41 | import Test.HUnit ((~:),(~=?),Test,test) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:43:1: warning: [-Wunused-imports] The qualified import of `Data.GraphViz' is redundant except perhaps to import instances from `Data.GraphViz' To import instances alone, use: import Data.GraphViz() | 43 | import qualified Data.GraphViz as Gv | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:47:1: warning: [-Wunused-imports] The import of `Data.GraphViz.Printing' is redundant except perhaps to import instances from `Data.GraphViz.Printing' To import instances alone, use: import Data.GraphViz.Printing() | 47 | import Data.GraphViz.Printing (renderDot) | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:52:75: warning: [-Wunused-imports] The import of `viewNewickTree' from module `Bio.Phylogeny.PhyBin.Visualize' is redundant | 52 | import Bio.Phylogeny.PhyBin.Visualize (dotToPDF, dotNewickTree, viewNewickTree, dotDendrogram) | ^^^^^^^^^^^^^^ Bio/Phylogeny/PhyBin.hs:120:3: warning: [-Wtabs] Tab character found here, and in 25 further locations. Suggested fix: Please use spaces instead. | 120 | if reg | ^^^^^^ [ 9 of 10] Compiling Paths_phybin ( dist-ghc/build/phybin/autogen/Paths_phybin.hs, dist-ghc/build/phybin/phybin-tmp/Paths_phybin.o ) [10 of 10] Compiling Main ( Main.hs, dist-ghc/build/phybin/phybin-tmp/Main.o ) Main.hs:151:1: warning: [-Wtabs] Tab character found here, and in 66 further locations. Suggested fix: Please use spaces instead. | 151 | "Leaf names in the input Newick trees can be gene names, not taxa.\n"++ | ^^^^^^^^ Main.hs:253:29: warning: [-Woperator-whitespace-ext-conflict] The prefix use of a `$' would denote an untyped splice were the TemplateHaskell extension enabled. Suggested fix: Add whitespace after the `$'. | 253 | oth -> error $"Line set difference mode expects two files as input, got "++show(length oth) | ^ Main.hs:263:14: warning: accepting non-standard pattern guards (use PatternGuards to suppress this message) Expected _ <- num_taxa cfg | 263 | | Expected _ <- num_taxa cfg -> error "should not set --numtaxa AND --tolerant" | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ : warning: [-Wmissing-home-modules] These modules are needed for compilation but not listed in your .cabal file's other-modules for `main' : Bio.Phylogeny.PhyBin Bio.Phylogeny.PhyBin.Binning Bio.Phylogeny.PhyBin.CoreTypes Bio.Phylogeny.PhyBin.Parser Bio.Phylogeny.PhyBin.PreProcessor Bio.Phylogeny.PhyBin.RFDistance Bio.Phylogeny.PhyBin.Util Bio.Phylogeny.PhyBin.Visualize Paths_phybin [11 of 11] Linking dist-ghc/build/phybin/phybin touch build-ghc-stamp perl -d:Confess -MDebian::Debhelper::Buildsystem::Haskell::Recipes=/.*/ \ -E 'check_recipe' Running dh_listpackages phybin Running Setup.hs ... Running 1 test suites... Test suite test-phybin: RUNNING... Main t30: OK (0.03s) All 1 tests passed (0.24s) Test suite test-phybin: PASS Test suite logged to: dist-ghc/test/phybin-0.3-test-phybin.log 1 of 1 test suites (1 of 1 test cases) passed. touch check-ghc-stamp Adding cdbs dependencies to debian/phybin.substvars dh_installdirs -pphybin \ dh_haskell_description --package=phybin Running grep-dctrl --no-field-names --show-field=Description --field=Source --regex .* debian/control Running grep-dctrl --no-field-names --show-field=X-Description --field=Source --regex .* debian/control dh_haskell_compiler --package=phybin Running dpkg-query --showformat=${Version} --show ghc 9.4.7-3 perl -d:Confess -MDebian::Debhelper::Buildsystem::Haskell::Recipes=/.*/ \ -E 'haddock_recipe' Running dh_listpackages phybin Running debian/hlibrary.setup haddock --builddir=dist-ghc --with-haddock=/usr/bin/haddock --with-ghc=ghc --verbose=2 --html --hoogle --haddock-options="--mathjax=file:///usr/share/javascript/mathjax/MathJax.js" --hyperlink-source Running Setup.hs ... /usr/bin/haddock --version /usr/bin/ghc --numeric-version /usr/bin/haddock --ghc-version '--mathjax=file:///usr/share/javascript/mathjax/MathJax.js' /usr/bin/ghc --print-libdir /usr/bin/ghc-pkg-9.4.7 init dist-ghc/package.conf.inplace creating dist-ghc/build/test-phybin creating dist-ghc/build/test-phybin/autogen creating dist-ghc/build/test-phybin/autogen Preprocessing test suite 'test-phybin' for phybin-0.3.. creating dist-ghc/build creating dist-ghc/build/autogen creating dist-ghc/build/autogen Preprocessing library for phybin-0.3.. Running Haddock on library for phybin-0.3.. creating dist-ghc/doc/html/phybin creating dist-ghc/doc/html creating dist-ghc/doc creating dist-ghc/doc/html creating dist-ghc/doc/html/phybin /usr/bin/haddock '@dist-ghc/doc/html/phybin/haddock-response18733-1.txt' '--mathjax=file:///usr/share/javascript/mathjax/MathJax.js' Warning: 'normalize' is out of scope. If you qualify the identifier, haddock can try to link it anyway. 76% ( 26 / 34) in 'Bio.Phylogeny.PhyBin.CoreTypes' Missing documentation for: Module header ClustMode (Bio/Phylogeny/PhyBin/CoreTypes.hs:268) TreeName (Bio/Phylogeny/PhyBin/CoreTypes.hs:198) liftFT (Bio/Phylogeny/PhyBin/CoreTypes.hs:195) get_dec (Bio/Phylogeny/PhyBin/CoreTypes.hs:292) set_dec (Bio/Phylogeny/PhyBin/CoreTypes.hs:297) get_children (Bio/Phylogeny/PhyBin/CoreTypes.hs:302) HasBranchLen (Bio/Phylogeny/PhyBin/CoreTypes.hs:176) 66% ( 4 / 6) in 'Bio.Phylogeny.PhyBin.Parser' Missing documentation for: Module header unitTests (Bio/Phylogeny/PhyBin/Parser.hs:213) Warning: 'collapser' is out of scope. If you qualify the identifier, haddock can try to link it anyway. 100% ( 5 / 5) in 'Bio.Phylogeny.PhyBin.PreProcessor' 60% ( 15 / 25) in 'Bio.Phylogeny.PhyBin.RFDistance' Missing documentation for: Module header DistanceMatrix (Bio/Phylogeny/PhyBin/RFDistance.hs:156) foldBips (Bio/Phylogeny/PhyBin/RFDistance.hs:242) mkSingleDense (Bio/Phylogeny/PhyBin/RFDistance.hs:139) mkEmptyDense (Bio/Phylogeny/PhyBin/RFDistance.hs:138) bipSize (Bio/Phylogeny/PhyBin/RFDistance.hs:141) denseUnions (Bio/Phylogeny/PhyBin/RFDistance.hs:140) denseDiff (Bio/Phylogeny/PhyBin/RFDistance.hs:122) markLabel (Bio/Phylogeny/PhyBin/RFDistance.hs:137) printDistMat (Bio/Phylogeny/PhyBin/RFDistance.hs:352) 60% ( 3 / 5) in 'Bio.Phylogeny.PhyBin.Util' Missing documentation for: is_regular_file (Bio/Phylogeny/PhyBin/Util.hs:73) sanityCheck (Bio/Phylogeny/PhyBin/Util.hs:133) 87% ( 7 / 8) in 'Bio.Phylogeny.PhyBin.Visualize' Missing documentation for: Module header 85% ( 12 / 14) in 'Bio.Phylogeny.PhyBin.Binning' Missing documentation for: get_weight (Bio/Phylogeny/PhyBin/Binning.hs:338) unitTests (Bio/Phylogeny/PhyBin/Binning.hs:380) 90% ( 9 / 10) in 'Bio.Phylogeny.PhyBin' Missing documentation for: unitTests (Bio/Phylogeny/PhyBin/Binning.hs:380) Warning: Bio.Phylogeny.PhyBin.CoreTypes: could not find link destinations for: - Data.Foldable.Foldable - GHC.Types.Type - Data.Foldable.fold - GHC.Base.Monoid - Data.Foldable.foldMap - Data.Foldable.foldMap' - Data.Foldable.foldr - Data.Foldable.foldr' - Data.Foldable.foldl - Data.Foldable.foldl' - Data.Foldable.foldr1 - Data.Foldable.foldl1 - Data.Foldable.toList - Data.Foldable.null - GHC.Types.Bool - Data.Foldable.length - GHC.Types.Int - Data.Foldable.elem - GHC.Classes.Eq - Data.Foldable.maximum - GHC.Classes.Ord - Data.Foldable.minimum - Data.Foldable.sum - GHC.Num.Num - Data.Foldable.product - GHC.Base.Functor - GHC.Base.fmap - GHC.Base.<$ - GHC.Show.Show - GHC.Show.showsPrec - GHC.Show.ShowS - GHC.Show.show - GHC.Base.String - GHC.Show.showList - GHC.Classes.== - GHC.Classes./= - GHC.Classes.compare - GHC.Types.Ordering - GHC.Classes.< - GHC.Classes.<= - GHC.Classes.> - GHC.Classes.>= - GHC.Classes.max - GHC.Classes.min - Text.PrettyPrint.HughesPJClass.Pretty - Text.PrettyPrint.HughesPJClass.pPrintPrec - Text.PrettyPrint.HughesPJClass.PrettyLevel - GHC.Real.Rational - Text.PrettyPrint.HughesPJ.Doc - Text.PrettyPrint.HughesPJClass.pPrint - Text.PrettyPrint.HughesPJClass.pPrintList - GHC.Maybe.Maybe - Bio.Phylogeny.PhyBin.CoreTypes.BranchLen - GHC.Read.Read - GHC.Read.readsPrec - Text.ParserCombinators.ReadP.ReadS - GHC.Read.readList - GHC.Read.readPrec - Text.ParserCombinators.ReadPrec.ReadPrec - GHC.Read.readListPrec - Data.Clustering.Hierarchical.Internal.Types.Linkage - GHC.Types.Double - GHC.IO.FilePath - Data.Map.Internal.Map Warning: Bio.Phylogeny.PhyBin.Parser: could not find link destinations for: - Bio.Phylogeny.PhyBin.Parser.NameHack - Text.Parsec.ByteString.Parser - Bio.Phylogeny.PhyBin.Parser.TempTree - GHC.Base.String - Data.ByteString.Internal.Type.ByteString - GHC.Types.IO - Test.HUnit.Base.Test Warning: Bio.Phylogeny.PhyBin.PreProcessor: could not find link destinations for: - GHC.Types.Bool - GHC.Enum.pred - GHC.Types.Double - GHC.Types.Int - Data.Set.Internal.Set - GHC.Maybe.Maybe Warning: Bio.Phylogeny.PhyBin.RFDistance: could not find link destinations for: - Data.IntSet.Internal.IntSet - Data.Vector.Vector - Data.Vector.Unboxed.Base.Vector - GHC.Types.Int - Data.Set.Internal.Set - GHC.Base.Monoid - GHC.Base.String - GHC.Types.Bool - GHC.IO.Handle.Types.Handle - GHC.Types.IO - Text.PrettyPrint.HughesPJClass.Pretty - Text.PrettyPrint.HughesPJClass.pPrintPrec - Text.PrettyPrint.HughesPJClass.PrettyLevel - GHC.Real.Rational - Text.PrettyPrint.HughesPJ.Doc - Text.PrettyPrint.HughesPJClass.pPrint - Text.PrettyPrint.HughesPJClass.pPrintList Warning: Bio.Phylogeny.PhyBin.Util: could not find link destinations for: - GHC.IO.FilePath - GHC.Types.IO - GHC.Types.Bool - GHC.Base.String - Data.GraphViz.Types.Canonical.DotGraph - Data.Graph.Inductive.Graph.Node - GHC.Maybe.Maybe - Data.Text.Internal.Lazy.Text - Data.Clustering.Hierarchical.Internal.Types.Dendrogram Warning: Bio.Phylogeny.PhyBin.Visualize: could not find link destinations for: - GHC.Base.String - GHC.Types.Double - Data.GraphViz.Types.Canonical.DotGraph - Data.Graph.Inductive.Graph.Node - GHC.IO.FilePath - GHC.Types.IO - GHC.Maybe.Maybe - Control.Concurrent.Chan.Chan - GHC.Types.Int - Data.Clustering.Hierarchical.Internal.Types.Dendrogram - Bio.Phylogeny.PhyBin.Visualize.DendroGraph - Data.Map.Internal.Map Warning: Bio.Phylogeny.PhyBin.Binning: could not find link destinations for: - GHC.Show.Show - GHC.Show.showsPrec - GHC.Types.Int - GHC.Show.ShowS - GHC.Show.show - GHC.Base.String - GHC.Show.showList - Data.Map.Internal.Map - Test.HUnit.Base.Test Warning: Bio.Phylogeny.PhyBin: could not find link destinations for: - GHC.Types.IO - Test.HUnit.Base.Test - GHC.Base.String - GHC.IO.FilePath - GHC.Types.Bool Documentation created: dist-ghc/doc/html/phybin/index.html, dist-ghc/doc/html/phybin/phybin.txt /usr/bin/ghc-pkg-9.4.7 recache '--package-db=dist-ghc/package.conf.inplace' creating dist-ghc/build/phybin creating dist-ghc/build/phybin/autogen creating dist-ghc/build/phybin/autogen Preprocessing executable 'phybin' for phybin-0.3.. touch build-haddock-stamp perl -d:Confess -MDebian::Debhelper::Buildsystem::Haskell::Recipes=/.*/ \ -E 'install_recipe($ARGV[0])' "debian/tmp-inst-ghc" Running dh_listpackages phybin Running debian/hlibrary.setup copy --builddir=dist-ghc --destdir=debian/tmp-inst-ghc Running Setup.hs ... Installing library in debian/tmp-inst-ghc/usr/lib/haskell-packages/ghc/lib/arm-linux-ghc-9.4.7/phybin-0.3-1J8DVkYI0hwDTHyYCQwsD4 Installing executable phybin in debian/tmp-inst-ghc/usr/bin ln --symbolic --force "debian/tmp-inst-ghc" debian/tmp : dh_install -pphybin dist-ghc/build/phybin/phybin usr/bin dh_installdocs -pphybin dh_installexamples -pphybin dh_installman -pphybin dh_installinfo -pphybin dh_installmenu -pphybin dh_installcron -pphybin dh_systemd_enable -pphybin dh_installinit -pphybin dh_installdebconf -pphybin dh_installemacsen -pphybin dh_installcatalogs -pphybin dh_installpam -pphybin dh_installlogrotate -pphybin dh_installlogcheck -pphybin dh_installchangelogs -pphybin dh_installudev -pphybin dh_lintian -pphybin dh_bugfiles -pphybin dh_install -pphybin dh_systemd_start -pphybin dh_link -pphybin dh_buildinfo -pphybin dh_installmime -pphybin dh_installgsettings -pphybin dh_strip -pphybin --no-automatic-dbgsym dh_strip_nondeterminism -pphybin dh_compress -pphybin -X .haddock -X .hs -X .txt dh_fixperms -pphybin dh_makeshlibs -pphybin -XlibHS dh_installdeb -pphybin dh_perl -pphybin dh_shlibdeps -pphybin -- --ignore-missing-info dh_gencontrol -pphybin dpkg-gencontrol: warning: Depends field of package phybin: substitution variable ${haskell:Depends} used, but is not defined dpkg-gencontrol: warning: Recommends field of package phybin: substitution variable ${haskell:Recommends} used, but is not defined dpkg-gencontrol: warning: Suggests field of package phybin: substitution variable ${haskell:Suggests} used, but is not defined dpkg-gencontrol: warning: Conflicts field of package phybin: substitution variable ${haskell:Conflicts} used, but is not defined dpkg-gencontrol: warning: Provides field of package phybin: substitution variable ${haskell:Provides} used, but is not defined dpkg-gencontrol: warning: package phybin: substitution variable ${haskell:ghc-version} unused, but is defined # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -pphybin ; fi dh_md5sums -pphybin dh_builddeb -pphybin dpkg-deb: building package 'phybin' in '../phybin_0.3-6_armhf.deb'. dpkg-genbuildinfo --build=binary -O../phybin_0.3-6_armhf.buildinfo dpkg-genchanges --build=binary -O../phybin_0.3-6_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1738 and its subdirectories I: Current time: Sun Mar 24 23:54:04 -12 2024 I: pbuilder-time-stamp: 1711367644 Mon Mar 25 11:54:19 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64b-armhf-rb.debian.net. Mon Mar 25 11:54:19 UTC 2024 I: Preparing to do remote build '2' on virt64b-armhf-rb.debian.net. Mon Mar 25 12:22:17 UTC 2024 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net. Mon Mar 25 12:22:21 UTC 2024 I: phybin_0.3-6_armhf.changes: Format: 1.8 Date: Fri, 30 Dec 2022 11:19:03 +0530 Source: phybin Binary: phybin Architecture: armhf Version: 0.3-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: phybin - binning/clustering newick trees by topology Changes: phybin (0.3-6) unstable; urgency=medium . * Team Upload. * Add patch to switch test deps from framework -> tasty. * B-D on tasty related packages instead of framework. Checksums-Sha1: e240e3325746fd97ef7d86a05755289f47bbb2e2 8628 phybin_0.3-6_armhf.buildinfo abd3a5d711f803b132f9d458f0f40a98a2aeeff6 5114816 phybin_0.3-6_armhf.deb Checksums-Sha256: cea7ff80966ebdf3641b571da8385972610264b01ab7f8a2715141f184638e39 8628 phybin_0.3-6_armhf.buildinfo 8e514109275f887eb7758c3899f7bf07de55a61a30a3e9241d6b703eda861309 5114816 phybin_0.3-6_armhf.deb Files: 95984d2caa831341a517ad41c7c9b2d3 8628 science optional phybin_0.3-6_armhf.buildinfo d6e46fc6069e3341ad41f425758da4c4 5114816 science optional phybin_0.3-6_armhf.deb Mon Mar 25 12:22:22 UTC 2024 I: diffoscope 261 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_35-1204.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.GMVfou0x/phybin_0.3-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.GMVfou0x/phybin_0.3-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.GMVfou0x/phybin_0.3-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.GMVfou0x/b1/phybin_0.3-6_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.GMVfou0x/b2/phybin_0.3-6_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.392s) 0.392s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.069s) 0.069s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 708ms CPU time consumed: 708ms Mon Mar 25 12:22:23 UTC 2024 I: diffoscope 261 found no differences in the changes files, and a .buildinfo file also exists. Mon Mar 25 12:22:23 UTC 2024 I: phybin from trixie built successfully and reproducibly on armhf. Mon Mar 25 12:22:24 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Mar 25 12:22:24 UTC 2024 I: Submitting 12K b1/phybin_0.3-6_armhf.buildinfo.asc Mon Mar 25 12:22:25 UTC 2024 I: Submitting 12K b2/phybin_0.3-6_armhf.buildinfo.asc Mon Mar 25 12:22:27 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Mar 25 12:22:27 UTC 2024 I: Done submitting .buildinfo files. Mon Mar 25 12:22:27 UTC 2024 I: Removing signed phybin_0.3-6_armhf.buildinfo.asc files: removed './b1/phybin_0.3-6_armhf.buildinfo.asc' removed './b2/phybin_0.3-6_armhf.buildinfo.asc'