Sun Nov 10 17:22:43 UTC 2024 I: starting to build optimir/trixie/armhf on jenkins on '2024-11-10 17:22' Sun Nov 10 17:22:43 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_11/6403/console.log Sun Nov 10 17:22:43 UTC 2024 I: Downloading source for trixie/optimir=1.2-2 --2024-11-10 17:22:43-- http://deb.debian.org/debian/pool/main/o/optimir/optimir_1.2-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1994 (1.9K) [text/prs.lines.tag] Saving to: ‘optimir_1.2-2.dsc’ 0K . 100% 224M=0s 2024-11-10 17:22:43 (224 MB/s) - ‘optimir_1.2-2.dsc’ saved [1994/1994] Sun Nov 10 17:22:43 UTC 2024 I: optimir_1.2-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: optimir Binary: optimir Architecture: all Version: 1.2-2 Maintainer: Debian Med Packaging Team Uploaders: Dylan Aïssi Homepage: https://github.com/FlorianThibord/OptimiR Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/optimir Vcs-Git: https://salsa.debian.org/med-team/optimir.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools Package-List: optimir deb science optional arch=all Checksums-Sha1: f5b0b31d4572ef7ae13df5720e4717251a7f7f16 1748155 optimir_1.2.orig.tar.gz 0ca869808e1c4fc01d75456be949ddf410782569 3748 optimir_1.2-2.debian.tar.xz Checksums-Sha256: de67c81c03ed3cb9faaba93388867faa8de57dfcada06544e6e762785545cb9b 1748155 optimir_1.2.orig.tar.gz 1475bcbeee84319fb621ad06ca18dee9dc51f35265dcd240c175bc0be368d499 3748 optimir_1.2-2.debian.tar.xz Files: 617473e1a1e467b85451c57c1875a86a 1748155 optimir_1.2.orig.tar.gz c4cca2c92f098a01d48fa36a5c93e9e5 3748 optimir_1.2-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmcXpkIRHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBq/WxAAjn+8wkRmK62tMuCpr7AqeLS3exTzSEBW hWzjMUHzCF7FC52aVw/rvuykvUA4WbWIEdyXBJecThQwjWSu5A97X0ODngbweHUT UcywIOGCEW7PIA6490YFdeCCcuRwbXvlPFwo6Hl+zqr3yM872uEyatIo8JYkY7Y1 G7tcQCBw+1PuB8tPY5+jy5MPN/BDLSEUer/4AiLzQEK+r7nJNZudtv9LLV/1t6zG P5duhwHro9lehoLakd38SfFPxON7fzDDqfettGwwPETufvkkt6CJU43sAYZwCtuf /YKiVL3FGczv0IiIwSPZWFLLVJPToZN2afnHHnEVa4i9xVUHNQ9PDweNrIIskKEN s0Nz9Qz+cXWUrXvBX9O0CMpePTYc9hArL9rELa+yhDa9VcdfDMItLCtpgth4ztCo qnt/8oZzJyhh11WLxSVjN6BX2MTjfzf+VBYD2HrVGeeg72w3pLoPFb9+cGAc06Qc C9Lb8A0eeaYNRNR95v+UG5lwFLbRTFbNjCaiOttWTvJ+BPMU4xAXIbJ5mIDotxuJ WEk9LGQEksFlNkC2jg0/NuYk1lBotwJbbR5AaveEL3yBt2yw7moyKNUunfjB8PZG HDLXZo3t0di+Bu3AThBohPWh9p1fWcmb2+nwqolXFKFKwyw21e0F3YYHLJON2y4e eK+47XGG94c= =iV8k -----END PGP SIGNATURE----- Sun Nov 10 17:22:43 UTC 2024 I: Checking whether the package is not for us Sun Nov 10 17:22:43 UTC 2024 I: Starting 1st build on remote node wbq0-armhf-rb.debian.net. Sun Nov 10 17:22:43 UTC 2024 I: Preparing to do remote build '1' on wbq0-armhf-rb.debian.net. Sun Nov 10 17:29:07 UTC 2024 I: Deleting $TMPDIR on wbq0-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 10 05:22:58 -12 2024 I: pbuilder-time-stamp: 1731259378 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [optimir_1.2-2.dsc] I: copying [./optimir_1.2.orig.tar.gz] I: copying [./optimir_1.2-2.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Oct 22 13:18:58 2024 gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A gpgv: issuer "tchet@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./optimir_1.2-2.dsc: no acceptable signature found dpkg-source: info: extracting optimir in optimir-1.2 dpkg-source: info: unpacking optimir_1.2.orig.tar.gz dpkg-source: info: unpacking optimir_1.2-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying SyntaxWarning.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/23096/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='7568c6997a954724b5ccdbab772400d9' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='23096' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.D1v7ulyb/pbuilderrc_Pmow --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.D1v7ulyb/b1 --logfile b1/build.log optimir_1.2-2.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux wbq0 6.1.0-26-armmp #1 SMP Debian 6.1.112-1 (2024-09-30) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/23096/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19689 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 26.8 MB of archives. After unpacking 101 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libpython3.12-minimal armhf 3.12.7-3 [800 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.3-2 [83.1 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf python3.12-minimal armhf 3.12.7-3 [1808 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.1-1+b1 [22.3 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 12 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3+b1 [71.3 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf libnsl2 armhf 1.3.0-3+b3 [35.0 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf libreadline8t64 armhf 8.2-5 [146 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libpython3.12-stdlib armhf 3.12.7-3 [1819 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf python3.12 armhf 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-9 [88.8 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-8 [517 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 44 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.1 [604 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf python3-autocommand all 2.2.2-3 [13.6 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf python3-typeguard all 4.4.1-1 [37.0 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf python3-inflect all 7.3.1-2 [32.4 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf python3-jaraco.context all 6.0.0-1 [7984 B] Get: 58 http://deb.debian.org/debian trixie/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf python3-pkg-resources all 74.1.2-2 [213 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf python3-zipp all 3.20.2-1 [10.3 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf python3-setuptools all 74.1.2-2 [736 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf dh-python all 6.20241024 [109 kB] Fetched 26.8 MB in 4s (6519 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19689 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.7-3) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.3-2_armhf.deb ... Unpacking libexpat1:armhf (2.6.3-2) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_armhf.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:armhf (3.12.7-3) ... Setting up libexpat1:armhf (2.6.3-2) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20009 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_armhf.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../04-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_armhf.deb ... Unpacking libcom-err2:armhf (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../06-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../07-libkeyutils1_1.6.3-4_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-4) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../08-libkrb5-3_1.21.3-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:armhf. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:armhf. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_armhf.deb ... Unpacking libnsl2:armhf (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../14-libreadline8t64_8.2-5_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:armhf. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_armhf.deb ... Unpacking libpython3.12-stdlib:armhf (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_armhf.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21071 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.6-1_armhf.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_armhf.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-5_armhf.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.2-9_armhf.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../09-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... 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Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.22.5-2_armhf.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../30-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../31-python3-more-itertools_10.5.0-1_all.deb ... 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Preparing to unpack .../37-python3-pkg-resources_74.1.2-2_all.deb ... Unpacking python3-pkg-resources (74.1.2-2) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../38-python3-zipp_3.20.2-1_all.deb ... Unpacking python3-zipp (3.20.2-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../39-python3-setuptools_74.1.2-2_all.deb ... Unpacking python3-setuptools (74.1.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../40-dh-python_6.20241024_all.deb ... Unpacking dh-python (6.20241024) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libkeyutils1:armhf (1.6.3-4) ... Setting up libicu72:armhf (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-9) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:armhf (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up libkrb5support0:armhf (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Nov 10 17:25:45 UTC 2024. Universal Time is now: Sun Nov 10 17:25:45 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:armhf (1.21.3-3) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:armhf (1.21.3-3) ... Setting up readline-common (8.2-5) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:armhf (1.21.3-3) ... Setting up libreadline8t64:armhf (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:armhf (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:armhf (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:armhf (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-setuptools (74.1.2-2) ... Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/optimir-1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../optimir_1.2-2_source.changes dpkg-buildpackage: info: source package optimir dpkg-buildpackage: info: source version 1.2-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir copying optimir/__init__.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir copying optimir/command_line.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir creating /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/filter_reads.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/annotate.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/pre_process.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/scoring.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/mapping.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/post_process.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/essentials.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/consistency.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/__init__.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/summarize.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/library_preparation.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/read_collapser.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/get_counts.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/process.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs running egg_info creating OptimiR.egg-info writing OptimiR.egg-info/PKG-INFO writing dependency_links to OptimiR.egg-info/dependency_links.txt writing entry points to OptimiR.egg-info/entry_points.txt writing requirements to OptimiR.egg-info/requires.txt writing top-level names to OptimiR.egg-info/top_level.txt writing manifest file 'OptimiR.egg-info/SOURCES.txt' reading manifest file 'OptimiR.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'OptimiR.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'optimir.resources.coordinates' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'optimir.resources.coordinates' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'optimir.resources.coordinates' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'optimir.resources.coordinates' to be distributed and are already explicitly excluding 'optimir.resources.coordinates' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'optimir.resources.fasta' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'optimir.resources.fasta' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'optimir.resources.fasta' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'optimir.resources.fasta' to be distributed and are already explicitly excluding 'optimir.resources.fasta' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources creating /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates copying optimir/resources/coordinates/hsa_miRBase_v21.gff3 -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates copying optimir/resources/coordinates/hsa_miRBase_v22.gff3 -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates copying optimir/resources/coordinates/hsa_miRCarta_v1.1.gff3 -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates copying optimir/resources/coordinates/hsa_miRgeneDB_v2.gff3 -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates creating /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_hairpins_miRBase_v21.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_hairpins_miRBase_v22.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_hairpins_miRCarta_v1.1.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_hairpins_miRgeneDB_v2.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_matures_miRBase_v21.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_matures_miRBase_v22.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_matures_miRCarta_v1.1.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta copying optimir/resources/fasta/hsa_matures_miRgeneDB_v2.fa -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build; python3.12 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/optimir/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/optimir-1.2/debian/optimir running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing OptimiR.egg-info/PKG-INFO writing dependency_links to OptimiR.egg-info/dependency_links.txt writing entry points to OptimiR.egg-info/entry_points.txt writing requirements to OptimiR.egg-info/requires.txt writing top-level names to OptimiR.egg-info/top_level.txt reading manifest file 'OptimiR.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'OptimiR.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'optimir.resources.coordinates' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'optimir.resources.coordinates' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'optimir.resources.coordinates' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'optimir.resources.coordinates' to be distributed and are already explicitly excluding 'optimir.resources.coordinates' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:218: _Warning: Package 'optimir.resources.fasta' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'optimir.resources.fasta' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'optimir.resources.fasta' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'optimir.resources.fasta' to be distributed and are already explicitly excluding 'optimir.resources.fasta' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) running install_lib creating /build/reproducible-path/optimir-1.2/debian/optimir/usr creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12 creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/filter_reads.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/annotate.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/pre_process.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/scoring.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/mapping.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/post_process.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/essentials.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/consistency.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/__init__.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/summarize.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/library_preparation.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/read_collapser.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/get_counts.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/__pycache__ copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/__pycache__ copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/process.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/__init__.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_hairpins_miRBase_v21.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_hairpins_miRCarta_v1.1.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_hairpins_miRBase_v22.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_matures_miRBase_v21.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_matures_miRBase_v22.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_hairpins_miRgeneDB_v2.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_matures_miRCarta_v1.1.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_matures_miRgeneDB_v2.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/coordinates copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates/hsa_miRBase_v21.gff3 -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/coordinates copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates/hsa_miRBase_v22.gff3 -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/coordinates copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates/hsa_miRgeneDB_v2.gff3 -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/coordinates copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates/hsa_miRCarta_v1.1.gff3 -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/coordinates creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/__pycache__ copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/__pycache__ copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/command_line.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/filter_reads.py to filter_reads.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/annotate.py to annotate.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/pre_process.py to pre_process.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/scoring.py to scoring.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/mapping.py to mapping.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/post_process.py to post_process.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/essentials.py to essentials.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/consistency.py to consistency.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/summarize.py to summarize.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/library_preparation.py to library_preparation.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/read_collapser.py to read_collapser.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/get_counts.py to get_counts.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/process.py to process.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/command_line.py to command_line.cpython-312.pyc running install_egg_info Copying OptimiR.egg-info to /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/OptimiR-1.0.egg-info Skipping SOURCES.txt running install_scripts Installing optimir script to /build/reproducible-path/optimir-1.2/debian/optimir/usr/bin dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/optimir-1.2' dh_installman debian/optimir.1 make[1]: Leaving directory '/build/reproducible-path/optimir-1.2' dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package optimir: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'optimir' in '../optimir_1.2-2_all.deb'. dpkg-genbuildinfo --build=binary -O../optimir_1.2-2_armhf.buildinfo dpkg-genchanges --build=binary -O../optimir_1.2-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/23096 and its subdirectories I: Current time: Sun Nov 10 05:29:00 -12 2024 I: pbuilder-time-stamp: 1731259740 Sun Nov 10 17:29:10 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64b-armhf-rb.debian.net. Sun Nov 10 17:29:10 UTC 2024 I: Preparing to do remote build '2' on virt64b-armhf-rb.debian.net. Sun Nov 10 17:31:04 UTC 2024 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net. Sun Nov 10 17:31:06 UTC 2024 I: optimir_1.2-2_armhf.changes: Format: 1.8 Date: Tue, 22 Oct 2024 15:16:30 +0200 Source: optimir Binary: optimir Architecture: all Version: 1.2-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: optimir - Integrating genetic variations in miRNA alignment Closes: 1085756 Changes: optimir (1.2-2) unstable; urgency=medium . * Team upload. * Fix SyntaxWarning (Closes: #1085756) Checksums-Sha1: 4bdbb5ab3f3d38f87a469025c37ad8b41d893c21 1026452 optimir_1.2-2_all.deb d2281e8a11b9d827774b8d93de794b59d07cfc18 5572 optimir_1.2-2_armhf.buildinfo Checksums-Sha256: d469eaf249bf000c43a43baef65f67064ff7dea54425370ab5f6f087efd903e9 1026452 optimir_1.2-2_all.deb 94419c1f47859c08b4a8116ed1ec379a15caa9534c1220dc57ede74ae6ec62b1 5572 optimir_1.2-2_armhf.buildinfo Files: 1c579a6e7b2b7536984649e00d733a3e 1026452 science optional optimir_1.2-2_all.deb 12df56a56180dd22509efe2fa71ac8a7 5572 science optional optimir_1.2-2_armhf.buildinfo Sun Nov 10 17:31:07 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_11-6403.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.D1v7ulyb/optimir_1.2-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.D1v7ulyb/optimir_1.2-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.D1v7ulyb/optimir_1.2-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.D1v7ulyb/b1/optimir_1.2-2_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.D1v7ulyb/b2/optimir_1.2-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.398s) 0.398s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.027s) 0.027s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 744ms CPU time consumed: 743ms Sun Nov 10 17:31:08 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Sun Nov 10 17:31:08 UTC 2024 I: optimir from trixie built successfully and reproducibly on armhf. Sun Nov 10 17:31:09 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Nov 10 17:31:09 UTC 2024 I: Submitting 8.0K b1/optimir_1.2-2_armhf.buildinfo.asc Sun Nov 10 17:31:10 UTC 2024 I: Submitting 8.0K b2/optimir_1.2-2_armhf.buildinfo.asc Sun Nov 10 17:31:11 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Nov 10 17:31:11 UTC 2024 I: Done submitting .buildinfo files. Sun Nov 10 17:31:11 UTC 2024 I: Removing signed optimir_1.2-2_armhf.buildinfo.asc files: removed './b1/optimir_1.2-2_armhf.buildinfo.asc' removed './b2/optimir_1.2-2_armhf.buildinfo.asc'