Tue Apr 23 01:04:04 UTC 2024 I: starting to build mlpy/trixie/armhf on jenkins on '2024-04-23 01:03' Tue Apr 23 01:04:04 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_33/12953/console.log Tue Apr 23 01:04:04 UTC 2024 I: Downloading source for trixie/mlpy=3.5.0+ds-3 --2024-04-23 01:04:04-- http://deb.debian.org/debian/pool/main/m/mlpy/mlpy_3.5.0%2bds-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2322 (2.3K) [text/prs.lines.tag] Saving to: ‘mlpy_3.5.0+ds-3.dsc’ 0K .. 100% 340M=0s 2024-04-23 01:04:04 (340 MB/s) - ‘mlpy_3.5.0+ds-3.dsc’ saved [2322/2322] Tue Apr 23 01:04:04 UTC 2024 I: mlpy_3.5.0+ds-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mlpy Binary: python3-mlpy, python-mlpy-doc, python3-mlpy-lib Architecture: any all Version: 3.5.0+ds-3 Maintainer: Debian Science Maintainers Uploaders: Yaroslav Halchenko , Michael Hanke Homepage: https://mlpy.fbk.eu/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/science-team/mlpy Vcs-Git: https://salsa.debian.org/science-team/mlpy.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libgsl-dev, cython3-legacy, python3-all-dev, python3-numpy, python3-sphinx, python3-scipy , tex-gyre, texlive, texlive-latex-extra, latexmk, help2man Package-List: python-mlpy-doc deb doc optional arch=all python3-mlpy deb python optional arch=all python3-mlpy-lib deb python optional arch=any Checksums-Sha1: 7adeb59906d23f7561b49ec67ab790c8d49d597e 1472016 mlpy_3.5.0+ds.orig.tar.xz 0424e257e4a7a06bbe2f2ed4bf80fea2c2e7043e 13220 mlpy_3.5.0+ds-3.debian.tar.xz Checksums-Sha256: bf7b960fdb80eb6baf49831c831d6cff8afd96c1e91000c04028d0c5eeef5272 1472016 mlpy_3.5.0+ds.orig.tar.xz 4e355fed07d236e2163be1cd7bb2d7dd4e7ac5b5297ecbb0a5721c7f50127310 13220 mlpy_3.5.0+ds-3.debian.tar.xz Files: 2b88d0a3f1452f3bdfc8acd23740eb62 1472016 mlpy_3.5.0+ds.orig.tar.xz e2f469cab41057f02a7612e0ea4215c7 13220 mlpy_3.5.0+ds-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWuFxYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF20RAAhKqc/z/y3iUrFzFvpopSLVY+eLKi5Y6Y kJ0IRTc7BGBa3Jh+tkJuCD0ptYHG2JDIgpNF1tWuWaKZcbf0KhcTPgTob7GPn81A jpOyDTMuV6f/eabfTrFKBmsxYl0XVr8trbbAkhLh0GMpwWyIIEWG/soi2KwWKL2Y PT6fcOnA10RM0/WfOPq7R+LpntAz9ddcxxDKjAI/d9MLHO868I//oDrsX2and3Nw fgX2bdYst8+GWwJpLu7EqvdI2F3Dsbxo/nntqWsR/AUVE7j3pEKe3su56yN+nYPs Z8533ihDSdZdgOAZ8pS/cmlDyVyOVybISkgfpAMpys76Jbo86MHJRV4xlW5I28fc dH2P2RLzs25pW8TuoPGnHO56nIeU5HnbXtRXGgTHajrA/QAJSWcU6+uT+m+WlmcM EKWhNC4CLHy9FvWUrtjDL029je5NL5kJTtcwxhafouePbaVPZ/cKNLagImqizIYL 9rNL3zn4fbo+XHGzTrLiI5ESDQSQujlBgK+lV05YYaLO3oMaDx/27y39p+kYNtya uUAzsoLzHLONb8kOYJJhUpV8FDkQzQR+2fysE37U/+bZt8qymKDXGE0LFRJkJCt6 /Nio85xkNNg/x/LvTFhqlP8sJZ9t+BaPTDqkMg6Q0Z4etX1QXIc+1mqCssSGjpTf Vw1lrHmTHsc= =30yv -----END PGP SIGNATURE----- Tue Apr 23 01:04:04 UTC 2024 I: Checking whether the package is not for us Tue Apr 23 01:04:04 UTC 2024 I: Starting 1st build on remote node virt32z-armhf-rb.debian.net. Tue Apr 23 01:04:04 UTC 2024 I: Preparing to do remote build '1' on virt32z-armhf-rb.debian.net. Tue Apr 23 01:18:26 UTC 2024 I: Deleting $TMPDIR on virt32z-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Apr 22 13:04:11 -12 2024 I: pbuilder-time-stamp: 1713834251 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mlpy_3.5.0+ds-3.dsc] I: copying [./mlpy_3.5.0+ds.orig.tar.xz] I: copying [./mlpy_3.5.0+ds-3.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Jan 22 07:19:50 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./mlpy_3.5.0+ds-3.dsc: no acceptable signature found dpkg-source: info: extracting mlpy in mlpy-3.5.0+ds dpkg-source: info: unpacking mlpy_3.5.0+ds.orig.tar.xz dpkg-source: info: unpacking mlpy_3.5.0+ds-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build-fix-Py3.12.patch dpkg-source: info: applying sphinx.patch dpkg-source: info: applying numpy-1.24.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/8876/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='315684b32cdb4ac39d4a737c5d2384f1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='8876' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5aRKLgeE/pbuilderrc_uHPT --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5aRKLgeE/b1 --logfile b1/build.log mlpy_3.5.0+ds-3.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32z 6.1.0-20-armmp-lpae #1 SMP Debian 6.1.85-1 (2024-04-11) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 21 07:12 /bin -> usr/bin I: user script /srv/workspace/pbuilder/8876/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, libgsl-dev, cython3-legacy, python3-all-dev, python3-numpy, python3-sphinx, python3-scipy, tex-gyre, texlive, texlive-latex-extra, latexmk, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19635 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on cython3-legacy; however: Package cython3-legacy is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on tex-gyre; however: Package tex-gyre is not installed. pbuilder-satisfydepends-dummy depends on texlive; however: Package texlive is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on latexmk; however: Package latexmk is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cython3-legacy{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} latexmk{a} libapache-pom-java{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcommons-logging-java{a} libcommons-parent-java{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libgsl-dev{a} libgsl27{a} libgslcblas0{a} libharfbuzz0b{a} libice6{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libkpathsea6{a} liblapack3{a} liblbfgsb0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libpaper-utils{a} libpaper1{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpotrace0{a} libptexenc1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.11{a} libpython3.11-dev{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8{a} libsm6{a} libsub-override-perl{a} libsynctex2{a} libteckit0{a} libtexlua53-5{a} libtool{a} libuchardet0{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libzzip-0-13{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} preview-latex-style{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-jinja2{a} python3-lib2to3{a} python3-markupsafe{a} python3-minimal{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-pygments{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-snowballstemmer{a} python3-sphinx{a} python3-urllib3{a} python3-zombie-imp{a} python3.11{a} python3.11-dev{a} python3.11-minimal{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} t1utils{a} tex-common{a} tex-gyre{a} texlive{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} tzdata{a} ucf{a} x11-common{a} xdg-utils{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: apvlv atril curl default-jre dvisvgm evince fonts-texgyre fonts-texgyre-math ghostscript gv javascript-common libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libjson-xs-perl libltdl-dev libmail-sendmail-perl libnet-dbus-perl libspreadsheet-parseexcel-perl libx11-protocol-perl lmodern lynx mupdf okular python3-pil qpdfview qpdfview-ps-plugin ruby shared-mime-info texlive-plain-generic tipa tk viewpdf.app wget x11-utils x11-xserver-utils xdg-user-dirs xpdf zathura-pdf-poppler zathura-ps 0 packages upgraded, 171 newly installed, 0 to remove and 0 not upgraded. Need to get 190 MB of archives. After unpacking 706 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf liblocale-gettext-perl armhf 1.07-6+b1 [14.6 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf libpython3.11-minimal armhf 3.11.8-1 [802 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf python3.11-minimal armhf 3.11.8-1 [1707 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf python3-minimal armhf 3.11.6-1 [26.2 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf tzdata all 2024a-1 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf readline-common all 8.2-3 [69.1 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf libreadline8 armhf 8.2-3+b1 [144 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libpython3.11-stdlib armhf 3.11.8-1 [1709 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf python3.11 armhf 3.11.8-1 [597 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf libpython3-stdlib armhf 3.11.6-1 [9224 B] Get: 14 http://deb.debian.org/debian trixie/main armhf python3 armhf 3.11.6-1 [26.2 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf libpython3.12-minimal armhf 3.12.2-1 [793 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf python3.12-minimal armhf 3.12.2-1 [1845 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf sgml-base all 1.31 [15.4 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf openssl armhf 3.1.5-1 [1208 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf ca-certificates all 20240203 [158 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-2+b1 [314 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libmagic1 armhf 1:5.45-2+b1 [97.9 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-2+b1 [42.2 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-3 [1088 kB] Get: 27 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.39.3-6 [81.2 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.12.0-3 [1367 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf ucf all 3.0043+nmu1 [55.2 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf autoconf all 2.71-3 [332 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf autopoint all 0.21-14 [496 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf python3-zombie-imp all 0.0.2-2 [11.7 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf cython3-legacy armhf 0.29.37-2 [2759 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-7 [517 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 45 http://deb.debian.org/debian trixie/main armhf libelf1 armhf 0.190-1+b1 [171 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1 [101 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 48 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b2 [599 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf debhelper all 13.15.3 [901 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf python3-pkg-resources all 68.1.2-2 [241 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf python3-lib2to3 all 3.11.5-1 [77.5 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf python3-distutils all 3.11.5-1 [131 kB] Get: 56 http://deb.debian.org/debian trixie/main armhf python3-setuptools all 68.1.2-2 [468 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf dh-python all 6.20240401 [107 kB] Get: 58 http://deb.debian.org/debian trixie/main armhf xml-core all 0.19 [20.1 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf docutils-common all 0.20.1+dfsg-3 [128 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf fontconfig-config armhf 2.15.0-1.1 [317 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf fonts-lmodern all 2.005-1 [4540 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf help2man armhf 1.49.3 [198 kB] Get: 65 http://deb.debian.org/debian trixie/main armhf tex-common all 6.18 [32.5 kB] Get: 66 http://deb.debian.org/debian trixie/main armhf libpaper1 armhf 1.1.29 [11.9 kB] Get: 67 http://deb.debian.org/debian trixie/main armhf libpaper-utils armhf 1.1.29 [8400 B] Get: 68 http://deb.debian.org/debian trixie/main armhf libkpathsea6 armhf 2023.20230311.66589-9 [144 kB] Get: 69 http://deb.debian.org/debian trixie/main armhf libptexenc1 armhf 2023.20230311.66589-9 [42.8 kB] Get: 70 http://deb.debian.org/debian trixie/main armhf libsynctex2 armhf 2023.20230311.66589-9 [48.5 kB] Get: 71 http://deb.debian.org/debian trixie/main armhf libtexlua53-5 armhf 2023.20230311.66589-9 [82.2 kB] Get: 72 http://deb.debian.org/debian trixie/main armhf t1utils armhf 1.41-4 [54.7 kB] Get: 73 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 74 http://deb.debian.org/debian trixie/main armhf libpng16-16 armhf 1.6.43-1 [262 kB] Get: 75 http://deb.debian.org/debian trixie/main armhf libfreetype6 armhf 2.13.2+dfsg-1+b1 [371 kB] Get: 76 http://deb.debian.org/debian trixie/main armhf libfontconfig1 armhf 2.15.0-1.1 [370 kB] Get: 77 http://deb.debian.org/debian trixie/main armhf libpixman-1-0 armhf 0.42.2-1+b1 [476 kB] Get: 78 http://deb.debian.org/debian trixie/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 79 http://deb.debian.org/debian trixie/main armhf libbsd0 armhf 0.12.2-1 [127 kB] Get: 80 http://deb.debian.org/debian trixie/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 81 http://deb.debian.org/debian trixie/main armhf libxcb1 armhf 1.15-1 [140 kB] Get: 82 http://deb.debian.org/debian trixie/main armhf libx11-data all 2:1.8.7-1 [328 kB] Get: 83 http://deb.debian.org/debian trixie/main armhf libx11-6 armhf 2:1.8.7-1 [735 kB] Get: 84 http://deb.debian.org/debian trixie/main armhf libxcb-render0 armhf 1.15-1 [114 kB] Get: 85 http://deb.debian.org/debian trixie/main armhf libxcb-shm0 armhf 1.15-1 [106 kB] Get: 86 http://deb.debian.org/debian trixie/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 87 http://deb.debian.org/debian trixie/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.1 kB] Get: 88 http://deb.debian.org/debian trixie/main armhf libcairo2 armhf 1.18.0-1+b1 [441 kB] Get: 89 http://deb.debian.org/debian trixie/main armhf libgraphite2-3 armhf 1.3.14-2 [63.2 kB] Get: 90 http://deb.debian.org/debian trixie/main armhf libglib2.0-0 armhf 2.78.4-1 [1281 kB] Get: 91 http://deb.debian.org/debian trixie/main armhf libharfbuzz0b armhf 8.3.0-2 [2155 kB] Get: 92 http://deb.debian.org/debian trixie/main armhf libpotrace0 armhf 1.16-2+b1 [22.6 kB] Get: 93 http://deb.debian.org/debian trixie/main armhf libteckit0 armhf 2.5.12+ds1-1 [259 kB] Get: 94 http://deb.debian.org/debian trixie/main armhf x11-common all 1:7.7+23 [252 kB] Get: 95 http://deb.debian.org/debian trixie/main armhf libice6 armhf 2:1.0.10-1 [51.9 kB] Get: 96 http://deb.debian.org/debian trixie/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get: 97 http://deb.debian.org/debian trixie/main armhf libxt6 armhf 1:1.2.1-1.1 [157 kB] Get: 98 http://deb.debian.org/debian trixie/main armhf libxmu6 armhf 2:1.1.3-3 [52.6 kB] Get: 99 http://deb.debian.org/debian trixie/main armhf libxpm4 armhf 1:3.5.17-1 [49.5 kB] Get: 100 http://deb.debian.org/debian trixie/main armhf libxaw7 armhf 2:1.0.14-1 [167 kB] Get: 101 http://deb.debian.org/debian trixie/main armhf libxi6 armhf 2:1.8.1-1 [73.8 kB] Get: 102 http://deb.debian.org/debian trixie/main armhf libzzip-0-13 armhf 0.13.72+dfsg.1-1.1+b1 [52.3 kB] Get: 103 http://deb.debian.org/debian trixie/main armhf texlive-binaries armhf 2023.20230311.66589-9 [6071 kB] Get: 104 http://deb.debian.org/debian trixie/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 105 http://deb.debian.org/debian trixie/main armhf texlive-base all 2023.20240207-1 [22.0 MB] Get: 106 http://deb.debian.org/debian trixie/main armhf texlive-latex-base all 2023.20240207-1 [1255 kB] Get: 107 http://deb.debian.org/debian trixie/main armhf latexmk all 1:4.85-1 [501 kB] Get: 108 http://deb.debian.org/debian trixie/main armhf libapache-pom-java all 29-2 [5276 B] Get: 109 http://deb.debian.org/debian trixie/main armhf libblas3 armhf 3.12.0-3 [108 kB] Get: 110 http://deb.debian.org/debian trixie/main armhf libcommons-parent-java all 56-1 [10.8 kB] Get: 111 http://deb.debian.org/debian trixie/main armhf libcommons-logging-java all 1.3.0-1 [68.6 kB] Get: 112 http://deb.debian.org/debian trixie/main armhf libexpat1-dev armhf 2.6.2-1 [140 kB] Get: 113 http://deb.debian.org/debian trixie/main armhf libfontbox-java all 1:1.8.16-5 [211 kB] Get: 114 http://deb.debian.org/debian trixie/main armhf libfontenc1 armhf 1:1.1.8-1 [20.6 kB] Get: 115 http://deb.debian.org/debian trixie/main armhf libgfortran5 armhf 14-20240201-3 [263 kB] Get: 116 http://deb.debian.org/debian trixie/main armhf libgslcblas0 armhf 2.7.1+dfsg-6+b1 [79.6 kB] Get: 117 http://deb.debian.org/debian trixie/main armhf libgsl27 armhf 2.7.1+dfsg-6+b1 [767 kB] Get: 118 http://deb.debian.org/debian trixie/main armhf libgsl-dev armhf 2.7.1+dfsg-6+b1 [975 kB] Get: 119 http://deb.debian.org/debian trixie/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 120 http://deb.debian.org/debian trixie/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 121 http://deb.debian.org/debian trixie/main armhf libjs-sphinxdoc all 7.2.6-6 [150 kB] Get: 122 http://deb.debian.org/debian trixie/main armhf libjson-perl all 4.10000-1 [87.5 kB] Get: 123 http://deb.debian.org/debian trixie/main armhf liblapack3 armhf 3.12.0-3 [1803 kB] Get: 124 http://deb.debian.org/debian trixie/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1+b1 [25.5 kB] Get: 125 http://deb.debian.org/debian trixie/main armhf libpdfbox-java all 1:1.8.16-5 [5527 kB] Get: 126 http://deb.debian.org/debian trixie/main armhf libpython3.11 armhf 3.11.8-1 [1710 kB] Get: 127 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg-3+b1 [904 kB] Get: 128 http://deb.debian.org/debian trixie/main armhf libpython3.11-dev armhf 3.11.8-1 [3420 kB] Get: 129 http://deb.debian.org/debian trixie/main armhf libpython3-dev armhf 3.11.6-1 [9456 B] Get: 130 http://deb.debian.org/debian trixie/main armhf libpython3.12-stdlib armhf 3.12.2-1 [1800 kB] Get: 131 http://deb.debian.org/debian trixie/main armhf libpython3.12 armhf 3.12.2-1 [1850 kB] Get: 132 http://deb.debian.org/debian trixie/main armhf libpython3.12-dev armhf 3.12.2-1 [3659 kB] Get: 133 http://deb.debian.org/debian trixie/main armhf libpython3-all-dev armhf 3.11.6-1 [1072 B] Get: 134 http://deb.debian.org/debian trixie/main armhf preview-latex-style all 13.2-1 [350 kB] Get: 135 http://deb.debian.org/debian trixie/main armhf python-babel-localedata all 2.14.0-1 [5701 kB] Get: 136 http://deb.debian.org/debian trixie/main armhf python3-alabaster all 0.7.12-1 [20.8 kB] Get: 137 http://deb.debian.org/debian trixie/main armhf python3.12 armhf 3.12.2-1 [653 kB] Get: 138 http://deb.debian.org/debian trixie/main armhf python3-all armhf 3.11.6-1 [1060 B] Get: 139 http://deb.debian.org/debian trixie/main armhf python3.11-dev armhf 3.11.8-1 [509 kB] Get: 140 http://deb.debian.org/debian trixie/main armhf python3-dev armhf 3.11.6-1 [26.1 kB] Get: 141 http://deb.debian.org/debian trixie/main armhf python3.12-dev armhf 3.12.2-1 [507 kB] Get: 142 http://deb.debian.org/debian trixie/main armhf python3-all-dev armhf 3.11.6-1 [1076 B] Get: 143 http://deb.debian.org/debian trixie/main armhf python3-babel all 2.14.0-1 [111 kB] Get: 144 http://deb.debian.org/debian trixie/main armhf python3-certifi all 2023.11.17-1 [155 kB] Get: 145 http://deb.debian.org/debian trixie/main armhf python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 146 http://deb.debian.org/debian trixie/main armhf python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 147 http://deb.debian.org/debian trixie/main armhf python3-decorator all 5.1.1-5 [15.1 kB] Get: 148 http://deb.debian.org/debian trixie/main armhf python3-roman all 3.3-3 [9880 B] Get: 149 http://deb.debian.org/debian trixie/main armhf python3-docutils all 0.20.1+dfsg-3 [389 kB] Get: 150 http://deb.debian.org/debian trixie/main armhf python3-idna all 3.6-2 [37.0 kB] Get: 151 http://deb.debian.org/debian trixie/main armhf python3-imagesize all 1.4.1-1 [6688 B] Get: 152 http://deb.debian.org/debian trixie/main armhf python3-markupsafe armhf 2.1.5-1 [13.9 kB] Get: 153 http://deb.debian.org/debian trixie/main armhf python3-jinja2 all 3.1.3-1 [119 kB] Get: 154 http://deb.debian.org/debian trixie/main armhf python3-numpy armhf 1:1.24.2-2 [4016 kB] Get: 155 http://deb.debian.org/debian trixie/main armhf python3-packaging all 24.0-1 [45.5 kB] Get: 156 http://deb.debian.org/debian trixie/main armhf python3-pygments all 2.17.2+dfsg-1 [818 kB] Get: 157 http://deb.debian.org/debian trixie/main armhf python3-six all 1.16.0-6 [16.3 kB] Get: 158 http://deb.debian.org/debian trixie/main armhf python3-urllib3 all 1.26.18-2 [116 kB] Get: 159 http://deb.debian.org/debian trixie/main armhf python3-requests all 2.31.0+dfsg-1 [68.6 kB] Get: 160 http://deb.debian.org/debian trixie/main armhf python3-scipy armhf 1.11.4-6 [16.9 MB] Get: 161 http://deb.debian.org/debian trixie/main armhf python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 162 http://deb.debian.org/debian trixie/main armhf sphinx-common all 7.2.6-6 [702 kB] Get: 163 http://deb.debian.org/debian trixie/main armhf python3-sphinx all 7.2.6-6 [552 kB] Get: 164 http://deb.debian.org/debian trixie/main armhf xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 165 http://deb.debian.org/debian trixie/main armhf xfonts-utils armhf 1:7.7+6 [84.5 kB] Get: 166 http://deb.debian.org/debian trixie/main armhf tex-gyre all 20180621-6 [6209 kB] Get: 167 http://deb.debian.org/debian trixie/main armhf texlive-fonts-recommended all 2023.20240207-1 [4990 kB] Get: 168 http://deb.debian.org/debian trixie/main armhf texlive-latex-recommended all 2023.20240207-1 [8843 kB] Get: 169 http://deb.debian.org/debian trixie/main armhf texlive all 2023.20240207-1 [18.2 kB] Get: 170 http://deb.debian.org/debian trixie/main armhf texlive-pictures all 2023.20240207-1 [16.7 MB] Get: 171 http://deb.debian.org/debian trixie/main armhf texlive-latex-extra all 2023.20240207-1 [19.7 MB] Fetched 190 MB in 2s (79.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19635 files and directories currently installed.) Preparing to unpack .../liblocale-gettext-perl_1.07-6+b1_armhf.deb ... Unpacking liblocale-gettext-perl (1.07-6+b1) ... Selecting previously unselected package libpython3.11-minimal:armhf. Preparing to unpack .../libpython3.11-minimal_3.11.8-1_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.8-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.2-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.8-1_armhf.deb ... Unpacking python3.11-minimal (3.11.8-1) ... Setting up libpython3.11-minimal:armhf (3.11.8-1) ... Setting up libexpat1:armhf (2.6.2-1) ... Setting up python3.11-minimal (3.11.8-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19966 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.6-1_armhf.deb ... Unpacking python3-minimal (3.11.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-1_all.deb ... Unpacking tzdata (2024a-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-3_all.deb ... Unpacking readline-common (8.2-3) ... Selecting previously unselected package libreadline8:armhf. Preparing to unpack .../5-libreadline8_8.2-3+b1_armhf.deb ... Unpacking libreadline8:armhf (8.2-3+b1) ... Selecting previously unselected package libpython3.11-stdlib:armhf. Preparing to unpack .../6-libpython3.11-stdlib_3.11.8-1_armhf.deb ... Unpacking libpython3.11-stdlib:armhf (3.11.8-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.8-1_armhf.deb ... Unpacking python3.11 (3.11.8-1) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../8-libpython3-stdlib_3.11.6-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.11.6-1) ... Setting up python3-minimal (3.11.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20954 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.6-1_armhf.deb ... Unpacking python3 (3.11.6-1) ... Selecting previously unselected package libpython3.12-minimal:armhf. Preparing to unpack .../001-libpython3.12-minimal_3.12.2-1_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.2-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../002-python3.12-minimal_3.12.2-1_armhf.deb ... Unpacking python3.12-minimal (3.12.2-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../003-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.1.5-1_armhf.deb ... Unpacking openssl (3.1.5-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../008-libmagic1_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic1:armhf (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.45-2+b1_armhf.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../010-gettext-base_0.21-14+b1_armhf.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../011-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../012-groff-base_1.23.0-3_armhf.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../013-bsdextrautils_2.39.3-6_armhf.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../014-libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../015-man-db_2.12.0-3_armhf.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package ucf. Preparing to unpack .../016-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../017-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../018-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../019-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../020-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../021-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package python3-zombie-imp. Preparing to unpack .../022-python3-zombie-imp_0.0.2-2_all.deb ... Unpacking python3-zombie-imp (0.0.2-2) ... Selecting previously unselected package cython3-legacy. Preparing to unpack .../023-cython3-legacy_0.29.37-2_armhf.deb ... Unpacking cython3-legacy (0.29.37-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../024-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../025-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../026-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../027-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../028-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../029-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../030-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../031-libelf1_0.190-1+b1_armhf.deb ... Unpacking libelf1:armhf (0.190-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../032-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/mlpy-3.5.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mlpy_3.5.0+ds-3_source.changes dpkg-buildpackage: info: source package mlpy dpkg-buildpackage: info: source version 3.5.0+ds-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /build/reproducible-path/mlpy-3.5.0+ds/setup.py:27: SyntaxWarning: invalid escape sequence '\s' data_files += [("Lib\site-packages\mlpy", dlls)] 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/mlpy-3.5.0+ds' dh_clean /usr/bin/make clean -C docs/ make[2]: Entering directory '/build/reproducible-path/mlpy-3.5.0+ds/docs' rm -rf build/* make[2]: Leaving directory '/build/reproducible-path/mlpy-3.5.0+ds/docs' rm -f mlpy/adatron/adatron.c rm -f mlpy/canberra/canberra.c rm -f mlpy/dtw/dtw.c rm -f mlpy/findpeaks/findpeaks.c rm -f mlpy/gsl/gsl.c rm -f mlpy/kernel/kernel.c rm -f mlpy/kmeans/kmeans.c rm -f mlpy/lcs/lcs.c rm -f mlpy/liblinear/liblinear.c rm -f mlpy/libml/libml.c rm -f mlpy/libsvm/libsvm.c make[1]: Leaving directory '/build/reproducible-path/mlpy-3.5.0+ds' debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /build/reproducible-path/mlpy-3.5.0+ds/setup.py:27: SyntaxWarning: invalid escape sequence '\s' data_files += [("Lib\site-packages\mlpy", dlls)] I: pybuild base:311: python3.11 setup.py config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build /build/reproducible-path/mlpy-3.5.0+ds/setup.py:27: SyntaxWarning: invalid escape sequence '\s' data_files += [("Lib\site-packages\mlpy", dlls)] /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/reproducible-path/mlpy-3.5.0+ds/mlpy/gsl/gsl.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/reproducible-path/mlpy-3.5.0+ds/mlpy/liblinear/liblinear.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/reproducible-path/mlpy-3.5.0+ds/mlpy/libsvm/libsvm.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/reproducible-path/mlpy-3.5.0+ds/mlpy/libml/libml.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/reproducible-path/mlpy-3.5.0+ds/mlpy/kmeans/kmeans.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/reproducible-path/mlpy-3.5.0+ds/mlpy/kernel/kernel.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/reproducible-path/mlpy-3.5.0+ds/mlpy/canberra/canberra.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/reproducible-path/mlpy-3.5.0+ds/mlpy/adatron/adatron.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/reproducible-path/mlpy-3.5.0+ds/mlpy/findpeaks/findpeaks.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: mlpy/findpeaks/findpeaks.pyx:24:0: 'stdlib' is deprecated, use 'libc.stdlib' /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/reproducible-path/mlpy-3.5.0+ds/mlpy/dtw/dtw.pyx tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/reproducible-path/mlpy-3.5.0+ds/mlpy/lcs/lcs.pyx tree = Parsing.p_module(s, pxd, full_module_name) In file included from /usr/include/python3.12/numpy/ndarraytypes.h:1940, from /usr/include/python3.12/numpy/ndarrayobject.h:12, from /usr/include/python3.12/numpy/arrayobject.h:5, from mlpy/gsl/gsl.c:754: /usr/include/python3.12/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/include/python3.12/numpy/ndarraytypes.h:1940, from /usr/include/python3.12/numpy/ndarrayobject.h:12, from /usr/include/python3.12/numpy/arrayobject.h:5, from mlpy/liblinear/liblinear.c:752: /usr/include/python3.12/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ mlpy/liblinear/liblinear.c: In function '__pyx_pf_4mlpy_9liblinear_9LibLinear___cinit__': mlpy/liblinear/liblinear.c:2888:30: warning: passing argument 1 of 'set_print_string_function' from incompatible pointer type [-Wincompatible-pointer-types] 2888 | set_print_string_function((&__pyx_f_4mlpy_9liblinear_print_null)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | void (*)(char *) In file included from mlpy/liblinear/liblinear.c:761: mlpy/liblinear/liblinear/linear.h:66:39: note: expected 'void (*)(const char *)' but argument is of type 'void (*)(char *)' 66 | void set_print_string_function(void (*print_func) (const char*)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ mlpy/liblinear/liblinear.c: In function '__pyx_pf_4mlpy_9liblinear_9LibLinear_6learn': mlpy/liblinear/liblinear.c:3920:15: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 3920 | __pyx_v_ret = check_parameter((&__pyx_v_self->problem), (&__pyx_v_self->parameter)); | ^ mlpy/liblinear/liblinear/linear.cpp: In function 'model* load_model(const char*)': mlpy/liblinear/liblinear/linear.cpp:2140:23: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2140 | fscanf(fp,"%80s",cmd); | ~~~~~~^~~~~~~~~~~~~~~ mlpy/liblinear/liblinear/linear.cpp:2143:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2143 | fscanf(fp,"%80s",cmd); | ~~~~~~^~~~~~~~~~~~~~~ mlpy/liblinear/liblinear/linear.cpp:2163:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2163 | fscanf(fp,"%d",&nr_class); | ~~~~~~^~~~~~~~~~~~~~~~~~~ mlpy/liblinear/liblinear/linear.cpp:2168:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2168 | fscanf(fp,"%d",&nr_feature); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~ mlpy/liblinear/liblinear/linear.cpp:2173:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2173 | fscanf(fp,"%lf",&bias); | ~~~~~~^~~~~~~~~~~~~~~~ mlpy/liblinear/liblinear/linear.cpp:2185:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2185 | fscanf(fp,"%d",&model_->label[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ mlpy/liblinear/liblinear/linear.cpp:2212:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2212 | fscanf(fp, "%lf ", &model_->w[i*nr_w+j]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mlpy/liblinear/liblinear/linear.cpp:2213:23: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2213 | fscanf(fp, "\n"); | ~~~~~~^~~~~~~~~~ In file included from /usr/include/python3.12/numpy/ndarraytypes.h:1940, from /usr/include/python3.12/numpy/ndarrayobject.h:12, from /usr/include/python3.12/numpy/arrayobject.h:5, from mlpy/libsvm/libsvm.c:752: /usr/include/python3.12/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ mlpy/libsvm/libsvm.c: In function '__pyx_pf_4mlpy_6libsvm_6LibSvm___cinit__': mlpy/libsvm/libsvm.c:2977:34: warning: passing argument 1 of 'svm_set_print_string_function' from incompatible pointer type [-Wincompatible-pointer-types] 2977 | svm_set_print_string_function((&__pyx_f_4mlpy_6libsvm_print_null)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | void (*)(char *) In file included from mlpy/libsvm/libsvm.c:761: mlpy/libsvm/libsvm/svm.h:95:43: note: expected 'void (*)(const char *)' but argument is of type 'void (*)(char *)' 95 | void svm_set_print_string_function(void (*print_func)(const char *)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ mlpy/libsvm/libsvm.c: In function '__pyx_pf_4mlpy_6libsvm_6LibSvm_6learn': mlpy/libsvm/libsvm.c:4178:15: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 4178 | __pyx_v_ret = svm_check_parameter((&__pyx_v_self->problem), (&__pyx_v_self->parameter)); | ^ mlpy/libsvm/libsvm/svm.cpp: In function 'svm_model* svm_load_model(const char*)': mlpy/libsvm/libsvm/svm.cpp:2706:23: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2706 | fscanf(fp,"%80s",cmd); | ~~~~~~^~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2710:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2710 | fscanf(fp,"%80s",cmd); | ~~~~~~^~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2732:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2732 | fscanf(fp,"%80s",cmd); | ~~~~~~^~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2753:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2753 | fscanf(fp,"%d",¶m.degree); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2755:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2755 | fscanf(fp,"%lf",¶m.gamma); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2757:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2757 | fscanf(fp,"%lf",¶m.coef0); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2759:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2759 | fscanf(fp,"%d",&model->nr_class); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2761:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2761 | fscanf(fp,"%d",&model->l); | ~~~~~~^~~~~~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2767:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2767 | fscanf(fp,"%lf",&model->rho[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2774:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2774 | fscanf(fp,"%d",&model->label[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2781:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2781 | fscanf(fp,"%lf",&model->probA[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2788:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2788 | fscanf(fp,"%lf",&model->probB[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2795:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2795 | fscanf(fp,"%d",&model->nSV[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/python3.12/numpy/ndarraytypes.h:1940, from /usr/include/python3.12/numpy/ndarrayobject.h:12, from /usr/include/python3.12/numpy/arrayobject.h:5, from mlpy/libml/libml.c:752: /usr/include/python3.12/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ mlpy/libml/src/ttest.c: In function 'betacf': mlpy/libml/src/ttest.c:113:1: warning: control reaches end of non-void function [-Wreturn-type] 113 | } | ^ mlpy/kmeans/c_kmeans.c: In function 'km': mlpy/kmeans/c_kmeans.c:243:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 243 | int ret, steps = 0; | ^~~ In file included from /usr/include/python3.12/numpy/ndarraytypes.h:1940, from /usr/include/python3.12/numpy/ndarrayobject.h:12, from /usr/include/python3.12/numpy/arrayobject.h:5, from mlpy/kmeans/kmeans.c:752: /usr/include/python3.12/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/include/python3.12/numpy/ndarraytypes.h:1940, from /usr/include/python3.12/numpy/ndarrayobject.h:12, from /usr/include/python3.12/numpy/arrayobject.h:5, from mlpy/kernel/kernel.c:752: /usr/include/python3.12/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/include/python3.12/numpy/ndarraytypes.h:1940, from /usr/include/python3.12/numpy/ndarrayobject.h:12, from /usr/include/python3.12/numpy/arrayobject.h:5, from mlpy/canberra/canberra.c:752: /usr/include/python3.12/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/include/python3.12/numpy/ndarraytypes.h:1940, from /usr/include/python3.12/numpy/ndarrayobject.h:12, from /usr/include/python3.12/numpy/arrayobject.h:5, from mlpy/adatron/adatron.c:752: /usr/include/python3.12/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/include/python3.12/numpy/ndarraytypes.h:1940, from /usr/include/python3.12/numpy/ndarrayobject.h:12, from /usr/include/python3.12/numpy/arrayobject.h:5, from mlpy/findpeaks/findpeaks.c:752: /usr/include/python3.12/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/include/python3.12/numpy/ndarraytypes.h:1940, from /usr/include/python3.12/numpy/ndarrayobject.h:12, from /usr/include/python3.12/numpy/arrayobject.h:5, from mlpy/dtw/dtw.c:752: /usr/include/python3.12/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ mlpy/lcs/clcs.c: In function 'std': mlpy/lcs/clcs.c:65:10: warning: '*' may be used uninitialized [-Wmaybe-uninitialized] 65 | ret = c[n][m]; | ~^~~ mlpy/lcs/clcs.c: In function 'real': mlpy/lcs/clcs.c:110:10: warning: '*' may be used uninitialized [-Wmaybe-uninitialized] 110 | ret = c[n][m]; | ~^~~ In file included from /usr/include/python3.12/numpy/ndarraytypes.h:1940, from /usr/include/python3.12/numpy/ndarrayobject.h:12, from /usr/include/python3.12/numpy/arrayobject.h:5, from mlpy/lcs/lcs.c:752: /usr/include/python3.12/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/include/python3.12/numpy/ndarraytypes.h:1940, from /usr/include/python3.12/numpy/ndarrayobject.h:12, from /usr/include/python3.12/numpy/arrayobject.h:5, from mlpy/wavelet/dwt.c:23: /usr/include/python3.12/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/include/python3.12/numpy/ndarraytypes.h:1940, from /usr/include/python3.12/numpy/ndarrayobject.h:12, from /usr/include/python3.12/numpy/arrayobject.h:5, from mlpy/wavelet/uwt.c:24: /usr/include/python3.12/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ mlpy/wavelet/uwt.c: In function 'uwt_uwt': mlpy/wavelet/uwt.c:148:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 148 | for(i=0; inc; i++) | ^ mlpy/wavelet/uwt.c: In function 'uwt_iuwt': mlpy/wavelet/uwt.c:235:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 235 | for(i=0; inc; i++) | ^ In file included from /usr/include/python3.12/numpy/ndarraytypes.h:1940, from /usr/include/python3.12/numpy/ndarrayobject.h:12, from /usr/include/python3.12/numpy/arrayobject.h:5, from mlpy/hcluster/hc.c:23: /usr/include/python3.12/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/include/python3.12/numpy/ndarraytypes.h:1940, from /usr/include/python3.12/numpy/ndarrayobject.h:12, from /usr/include/python3.12/numpy/arrayobject.h:5, from mlpy/bordacount/borda.c:20: /usr/include/python3.12/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ cc1plus: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++ In file included from /usr/include/python3.12/numpy/ndarraytypes.h:1940, from /usr/include/python3.12/numpy/ndarrayobject.h:12, from /usr/include/python3.12/numpy/arrayobject.h:5, from mlpy/fastcluster/fastcluster/src/fastcluster_python.cpp:15: /usr/include/python3.12/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ mlpy/fastcluster/fastcluster/src/fastcluster_python.cpp: In function 'PyObject* linkage_wrap(PyObject*, PyObject*)': mlpy/fastcluster/fastcluster/src/fastcluster_python.cpp:141:14: warning: right shift count >= width of type [-Wshift-count-overflow] 141 | (N-1)>>(T_FLOAT_MANT_DIG-1) > 0) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ mlpy/fastcluster/fastcluster/src/fastcluster_python.cpp: In member function 'void python_dissimilarity::nbool_correspond_tfft(t_index, t_index) const': mlpy/fastcluster/fastcluster/src/fastcluster_python.cpp:709:28: warning: '~' on an expression of type 'bool' [-Wbool-operation] 709 | NTF += (Xb(i,k) & ~Xb(j,k)) ; | ~~^~~~~ mlpy/fastcluster/fastcluster/src/fastcluster_python.cpp:709:28: note: did you mean to use logical not ('!')? mlpy/fastcluster/fastcluster/src/fastcluster_python.cpp: In function 'PyObject* linkage_vector_wrap(PyObject*, PyObject*)': mlpy/fastcluster/fastcluster/src/fastcluster_python.cpp:822:14: warning: right shift count >= width of type [-Wshift-count-overflow] 822 | (N-1)>>(T_FLOAT_MANT_DIG-1) > 0) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ I: pybuild base:311: /usr/bin/python3 setup.py build In file included from /usr/include/python3.11/numpy/ndarraytypes.h:1940, from /usr/include/python3.11/numpy/ndarrayobject.h:12, from /usr/include/python3.11/numpy/arrayobject.h:5, from mlpy/gsl/gsl.c:754: /usr/include/python3.11/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/include/python3.11/numpy/ndarraytypes.h:1940, from /usr/include/python3.11/numpy/ndarrayobject.h:12, from /usr/include/python3.11/numpy/arrayobject.h:5, from mlpy/liblinear/liblinear.c:752: /usr/include/python3.11/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ mlpy/liblinear/liblinear.c: In function '__pyx_pf_4mlpy_9liblinear_9LibLinear___cinit__': mlpy/liblinear/liblinear.c:2888:30: warning: passing argument 1 of 'set_print_string_function' from incompatible pointer type [-Wincompatible-pointer-types] 2888 | set_print_string_function((&__pyx_f_4mlpy_9liblinear_print_null)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | void (*)(char *) In file included from mlpy/liblinear/liblinear.c:761: mlpy/liblinear/liblinear/linear.h:66:39: note: expected 'void (*)(const char *)' but argument is of type 'void (*)(char *)' 66 | void set_print_string_function(void (*print_func) (const char*)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ mlpy/liblinear/liblinear.c: In function '__pyx_pf_4mlpy_9liblinear_9LibLinear_6learn': mlpy/liblinear/liblinear.c:3920:15: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 3920 | __pyx_v_ret = check_parameter((&__pyx_v_self->problem), (&__pyx_v_self->parameter)); | ^ mlpy/liblinear/liblinear/linear.cpp: In function 'model* load_model(const char*)': mlpy/liblinear/liblinear/linear.cpp:2140:23: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2140 | fscanf(fp,"%80s",cmd); | ~~~~~~^~~~~~~~~~~~~~~ mlpy/liblinear/liblinear/linear.cpp:2143:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2143 | fscanf(fp,"%80s",cmd); | ~~~~~~^~~~~~~~~~~~~~~ mlpy/liblinear/liblinear/linear.cpp:2163:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2163 | fscanf(fp,"%d",&nr_class); | ~~~~~~^~~~~~~~~~~~~~~~~~~ mlpy/liblinear/liblinear/linear.cpp:2168:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2168 | fscanf(fp,"%d",&nr_feature); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~ mlpy/liblinear/liblinear/linear.cpp:2173:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2173 | fscanf(fp,"%lf",&bias); | ~~~~~~^~~~~~~~~~~~~~~~ mlpy/liblinear/liblinear/linear.cpp:2185:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2185 | fscanf(fp,"%d",&model_->label[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ mlpy/liblinear/liblinear/linear.cpp:2212:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2212 | fscanf(fp, "%lf ", &model_->w[i*nr_w+j]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mlpy/liblinear/liblinear/linear.cpp:2213:23: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2213 | fscanf(fp, "\n"); | ~~~~~~^~~~~~~~~~ In file included from /usr/include/python3.11/numpy/ndarraytypes.h:1940, from /usr/include/python3.11/numpy/ndarrayobject.h:12, from /usr/include/python3.11/numpy/arrayobject.h:5, from mlpy/libsvm/libsvm.c:752: /usr/include/python3.11/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ mlpy/libsvm/libsvm.c: In function '__pyx_pf_4mlpy_6libsvm_6LibSvm___cinit__': mlpy/libsvm/libsvm.c:2977:34: warning: passing argument 1 of 'svm_set_print_string_function' from incompatible pointer type [-Wincompatible-pointer-types] 2977 | svm_set_print_string_function((&__pyx_f_4mlpy_6libsvm_print_null)); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | void (*)(char *) In file included from mlpy/libsvm/libsvm.c:761: mlpy/libsvm/libsvm/svm.h:95:43: note: expected 'void (*)(const char *)' but argument is of type 'void (*)(char *)' 95 | void svm_set_print_string_function(void (*print_func)(const char *)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ mlpy/libsvm/libsvm.c: In function '__pyx_pf_4mlpy_6libsvm_6LibSvm_6learn': mlpy/libsvm/libsvm.c:4178:15: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] 4178 | __pyx_v_ret = svm_check_parameter((&__pyx_v_self->problem), (&__pyx_v_self->parameter)); | ^ mlpy/libsvm/libsvm/svm.cpp: In function 'svm_model* svm_load_model(const char*)': mlpy/libsvm/libsvm/svm.cpp:2706:23: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2706 | fscanf(fp,"%80s",cmd); | ~~~~~~^~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2710:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2710 | fscanf(fp,"%80s",cmd); | ~~~~~~^~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2732:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2732 | fscanf(fp,"%80s",cmd); | ~~~~~~^~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2753:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2753 | fscanf(fp,"%d",¶m.degree); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2755:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2755 | fscanf(fp,"%lf",¶m.gamma); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2757:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2757 | fscanf(fp,"%lf",¶m.coef0); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2759:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2759 | fscanf(fp,"%d",&model->nr_class); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2761:31: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2761 | fscanf(fp,"%d",&model->l); | ~~~~~~^~~~~~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2767:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2767 | fscanf(fp,"%lf",&model->rho[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2774:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2774 | fscanf(fp,"%d",&model->label[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2781:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2781 | fscanf(fp,"%lf",&model->probA[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2788:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2788 | fscanf(fp,"%lf",&model->probB[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ mlpy/libsvm/libsvm/svm.cpp:2795:39: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 2795 | fscanf(fp,"%d",&model->nSV[i]); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/python3.11/numpy/ndarraytypes.h:1940, from /usr/include/python3.11/numpy/ndarrayobject.h:12, from /usr/include/python3.11/numpy/arrayobject.h:5, from mlpy/libml/libml.c:752: /usr/include/python3.11/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ mlpy/libml/src/ttest.c: In function 'betacf': mlpy/libml/src/ttest.c:113:1: warning: control reaches end of non-void function [-Wreturn-type] 113 | } | ^ mlpy/kmeans/c_kmeans.c: In function 'km': mlpy/kmeans/c_kmeans.c:243:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable] 243 | int ret, steps = 0; | ^~~ In file included from /usr/include/python3.11/numpy/ndarraytypes.h:1940, from /usr/include/python3.11/numpy/ndarrayobject.h:12, from /usr/include/python3.11/numpy/arrayobject.h:5, from mlpy/kmeans/kmeans.c:752: /usr/include/python3.11/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/include/python3.11/numpy/ndarraytypes.h:1940, from /usr/include/python3.11/numpy/ndarrayobject.h:12, from /usr/include/python3.11/numpy/arrayobject.h:5, from mlpy/kernel/kernel.c:752: /usr/include/python3.11/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/include/python3.11/numpy/ndarraytypes.h:1940, from /usr/include/python3.11/numpy/ndarrayobject.h:12, from /usr/include/python3.11/numpy/arrayobject.h:5, from mlpy/canberra/canberra.c:752: /usr/include/python3.11/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/include/python3.11/numpy/ndarraytypes.h:1940, from /usr/include/python3.11/numpy/ndarrayobject.h:12, from /usr/include/python3.11/numpy/arrayobject.h:5, from mlpy/adatron/adatron.c:752: /usr/include/python3.11/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/include/python3.11/numpy/ndarraytypes.h:1940, from /usr/include/python3.11/numpy/ndarrayobject.h:12, from /usr/include/python3.11/numpy/arrayobject.h:5, from mlpy/findpeaks/findpeaks.c:752: /usr/include/python3.11/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/include/python3.11/numpy/ndarraytypes.h:1940, from /usr/include/python3.11/numpy/ndarrayobject.h:12, from /usr/include/python3.11/numpy/arrayobject.h:5, from mlpy/dtw/dtw.c:752: /usr/include/python3.11/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ mlpy/lcs/clcs.c: In function 'std': mlpy/lcs/clcs.c:65:10: warning: '*' may be used uninitialized [-Wmaybe-uninitialized] 65 | ret = c[n][m]; | ~^~~ mlpy/lcs/clcs.c: In function 'real': mlpy/lcs/clcs.c:110:10: warning: '*' may be used uninitialized [-Wmaybe-uninitialized] 110 | ret = c[n][m]; | ~^~~ In file included from /usr/include/python3.11/numpy/ndarraytypes.h:1940, from /usr/include/python3.11/numpy/ndarrayobject.h:12, from /usr/include/python3.11/numpy/arrayobject.h:5, from mlpy/lcs/lcs.c:752: /usr/include/python3.11/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/include/python3.11/numpy/ndarraytypes.h:1940, from /usr/include/python3.11/numpy/ndarrayobject.h:12, from /usr/include/python3.11/numpy/arrayobject.h:5, from mlpy/wavelet/dwt.c:23: /usr/include/python3.11/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/include/python3.11/numpy/ndarraytypes.h:1940, from /usr/include/python3.11/numpy/ndarrayobject.h:12, from /usr/include/python3.11/numpy/arrayobject.h:5, from mlpy/wavelet/uwt.c:24: /usr/include/python3.11/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ mlpy/wavelet/uwt.c: In function 'uwt_uwt': mlpy/wavelet/uwt.c:148:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 148 | for(i=0; inc; i++) | ^ mlpy/wavelet/uwt.c: In function 'uwt_iuwt': mlpy/wavelet/uwt.c:235:13: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 235 | for(i=0; inc; i++) | ^ In file included from /usr/include/python3.11/numpy/ndarraytypes.h:1940, from /usr/include/python3.11/numpy/ndarrayobject.h:12, from /usr/include/python3.11/numpy/arrayobject.h:5, from mlpy/hcluster/hc.c:23: /usr/include/python3.11/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/include/python3.11/numpy/ndarraytypes.h:1940, from /usr/include/python3.11/numpy/ndarrayobject.h:12, from /usr/include/python3.11/numpy/arrayobject.h:5, from mlpy/bordacount/borda.c:20: /usr/include/python3.11/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ cc1plus: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++ In file included from /usr/include/python3.11/numpy/ndarraytypes.h:1940, from /usr/include/python3.11/numpy/ndarrayobject.h:12, from /usr/include/python3.11/numpy/arrayobject.h:5, from mlpy/fastcluster/fastcluster/src/fastcluster_python.cpp:15: /usr/include/python3.11/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ mlpy/fastcluster/fastcluster/src/fastcluster_python.cpp: In function 'PyObject* linkage_wrap(PyObject*, PyObject*)': mlpy/fastcluster/fastcluster/src/fastcluster_python.cpp:141:14: warning: right shift count >= width of type [-Wshift-count-overflow] 141 | (N-1)>>(T_FLOAT_MANT_DIG-1) > 0) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ mlpy/fastcluster/fastcluster/src/fastcluster_python.cpp: In member function 'void python_dissimilarity::nbool_correspond_tfft(t_index, t_index) const': mlpy/fastcluster/fastcluster/src/fastcluster_python.cpp:709:28: warning: '~' on an expression of type 'bool' [-Wbool-operation] 709 | NTF += (Xb(i,k) & ~Xb(j,k)) ; | ~~^~~~~ mlpy/fastcluster/fastcluster/src/fastcluster_python.cpp:709:28: note: did you mean to use logical not ('!')? mlpy/fastcluster/fastcluster/src/fastcluster_python.cpp: In function 'PyObject* linkage_vector_wrap(PyObject*, PyObject*)': mlpy/fastcluster/fastcluster/src/fastcluster_python.cpp:822:14: warning: right shift count >= width of type [-Wshift-count-overflow] 822 | (N-1)>>(T_FLOAT_MANT_DIG-1) > 0) { | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/mlpy-3.5.0+ds/.pybuild/cpython3_3.12_mlpy/build; python3.12 -m unittest discover -v /build/reproducible-path/mlpy-3.5.0+ds/.pybuild/cpython3_3.12_mlpy/build/mlpy/elasticnet.py:34: SyntaxWarning: invalid escape sequence '\|' """Elastic Net Regularization via Iterative Soft Thresholding. /build/reproducible-path/mlpy-3.5.0+ds/.pybuild/cpython3_3.12_mlpy/build/mlpy/elasticnet.py:117: SyntaxWarning: invalid escape sequence '\|' """Elastic Net Regularization via Iterative Soft Thresholding. /build/reproducible-path/mlpy-3.5.0+ds/.pybuild/cpython3_3.12_mlpy/build/mlpy/dimred.py:276: SyntaxWarning: invalid escape sequence '\l' """Kernel Principal Component Analysis, PCA in /build/reproducible-path/mlpy-3.5.0+ds/.pybuild/cpython3_3.12_mlpy/build/mlpy/wavelet/continuous.py:252: SyntaxWarning: "is not" with 'int' literal. Did you mean "!="? if x_arr.ndim is not 1: /build/reproducible-path/mlpy-3.5.0+ds/.pybuild/cpython3_3.12_mlpy/build/mlpy/wavelet/continuous.py:255: SyntaxWarning: "is not" with 'int' literal. Did you mean "!="? if scales_arr.ndim is not 1: ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN I: pybuild base:311: cd /build/reproducible-path/mlpy-3.5.0+ds/.pybuild/cpython3_3.11_mlpy/build; python3.11 -m unittest discover -v /build/reproducible-path/mlpy-3.5.0+ds/.pybuild/cpython3_3.11_mlpy/build/mlpy/wavelet/continuous.py:252: SyntaxWarning: "is not" with a literal. Did you mean "!="? if x_arr.ndim is not 1: /build/reproducible-path/mlpy-3.5.0+ds/.pybuild/cpython3_3.11_mlpy/build/mlpy/wavelet/continuous.py:255: SyntaxWarning: "is not" with a literal. Did you mean "!="? if scales_arr.ndim is not 1: ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/mlpy-3.5.0+ds/debian/python3-mlpy /build/reproducible-path/mlpy-3.5.0+ds/setup.py:27: SyntaxWarning: invalid escape sequence '\s' data_files += [("Lib\site-packages\mlpy", dlls)] /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() /usr/lib/python3.12/dist-packages/mlpy/elasticnet.py:34: SyntaxWarning: invalid escape sequence '\|' /usr/lib/python3.12/dist-packages/mlpy/elasticnet.py:117: SyntaxWarning: invalid escape sequence '\|' /usr/lib/python3.12/dist-packages/mlpy/fastcluster/fastcluster.py:80: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/mlpy/fastcluster/fastcluster.py:237: SyntaxWarning: invalid escape sequence '\c' /usr/lib/python3.12/dist-packages/mlpy/fastcluster/fastcluster.py:274: SyntaxWarning: invalid escape sequence '\s' /usr/lib/python3.12/dist-packages/mlpy/wavelet/continuous.py:252: SyntaxWarning: "is not" with 'int' literal. Did you mean "!="? /usr/lib/python3.12/dist-packages/mlpy/wavelet/continuous.py:255: SyntaxWarning: "is not" with 'int' literal. Did you mean "!="? /usr/lib/python3.12/dist-packages/mlpy/dimred.py:276: SyntaxWarning: invalid escape sequence '\l' /usr/lib/python3/dist-packages/setuptools/command/sdist.py:126: SetuptoolsDeprecationWarning: `build_py` command does not inherit from setuptools' `build_py`. !! ******************************************************************************** Custom 'build_py' does not implement 'get_data_files_without_manifest'. Please extend command classes from setuptools instead of distutils. See https://peps.python.org/pep-0632/ for details. ******************************************************************************** !! self._add_data_files(self._safe_data_files(build_py)) I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/mlpy-3.5.0+ds/debian/python3-mlpy /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() /usr/lib/python3.11/dist-packages/mlpy/wavelet/continuous.py:252: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.11/dist-packages/mlpy/wavelet/continuous.py:255: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3/dist-packages/setuptools/command/sdist.py:126: SetuptoolsDeprecationWarning: `build_py` command does not inherit from setuptools' `build_py`. !! ******************************************************************************** Custom 'build_py' does not implement 'get_data_files_without_manifest'. Please extend command classes from setuptools instead of distutils. See https://peps.python.org/pep-0632/ for details. ******************************************************************************** !! self._add_data_files(self._safe_data_files(build_py)) debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/mlpy-3.5.0+ds' /usr/bin/make -C docs html latex make[2]: Entering directory '/build/reproducible-path/mlpy-3.5.0+ds/docs' sphinx-build -b html -d build/doctrees source build/html Running Sphinx v7.2.6 making output directory... done WARNING: html_static_path entry '_static' does not exist [autosummary] generating autosummary for: borda.txt, canberra.txt, cluster.txt, crossval.txt, dim_red.txt, dtw.txt, findpeaks.txt, index.txt, install.txt, intro.txt, ..., metrics.txt, nonlin_class.txt, nonlin_regr.txt, scaling.txt, selection.txt, stats.txt, svm.txt, tutorial.txt, wavelet.txt, weighting.txt building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 25 source files that are out of date updating environment: [new config] 25 added, 0 changed, 0 removed reading sources... [ 4%] borda reading sources... [ 8%] canberra reading sources... [ 12%] cluster reading sources... [ 16%] crossval reading sources... [ 20%] dim_red reading sources... [ 24%] dtw reading sources... [ 28%] findpeaks reading sources... [ 32%] index reading sources... [ 36%] install reading sources... [ 40%] intro reading sources... [ 44%] kernel reading sources... [ 48%] lcs reading sources... [ 52%] liblinear reading sources... [ 56%] lin_class reading sources... [ 60%] lin_regr reading sources... [ 64%] metrics reading sources... [ 68%] nonlin_class reading sources... [ 72%] nonlin_regr reading sources... [ 76%] scaling reading sources... [ 80%] selection reading sources... [ 84%] stats reading sources... [ 88%] svm reading sources... [ 92%] tutorial reading sources... [ 96%] wavelet reading sources... [100%] weighting WARNING: autodoc: failed to import function 'borda_count' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'canberra' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'canberra_location' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'canberra_location_expected' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'canberra_stability' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'HCluster' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'MFastHCluster' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'cv_kfold' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'cv_random' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'cv_all' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'LDA' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'SRDA' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'KFDA' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'PCA' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'PCAFast' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'KPCA' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'dtw_std' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'dtw_subsequence' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'findpeaks_dist' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'findpeaks_win' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'Kernel' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'KernelLinear' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'KernelPolynomial' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'KernelGaussian' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'KernelExponential' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'KernelSigmoid' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'lcs_std' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'lcs_real' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibLinear.learn' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibLinear.pred' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibLinear.pred_values' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibLinear.pred_probability' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibLinear.w' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibLinear.bias' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibLinear.nfeature' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibLinear.nclasses' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibLinear.labels' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibLinear.load_model' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibLinear.save_model' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'LDAC' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'Perceptron' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'ElasticNetC' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'DLDA' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'Golub' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'ols_base' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'OLS' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'ridge_base' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'Ridge' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'PLS' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'lars_base' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'LARS' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'elasticnet_base' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'ElasticNet' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'error' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'accuracy' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'error_p' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'error_n' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'sensitivity' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'specificity' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'ppv' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'npv' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'mcc' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'auc_wmw' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'mse' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'r2' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'r2_corr' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'Parzen' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'KFDAC' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'KNN.learn' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'KNN.pred' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'KNN.nclasses' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'KNN.labels' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'ClassTree.learn' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'ClassTree.pred' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'ClassTree.nclasses' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'ClassTree.labels' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'MaximumLikelihoodC.learn' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'MaximumLikelihoodC.pred' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'MaximumLikelihoodC.nclasses' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'MaximumLikelihoodC.labels' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'KernelRidge' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'rfe_w2' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'rfe_kfda' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'bootstrap_ci' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'quantile' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibSvm.learn' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibSvm.pred' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibSvm.pred_probability' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibSvm.pred_values' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibSvm.labels' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibSvm.nclasses' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibSvm.nsv' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibSvm.label_nsv' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibSvm.load_model' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibSvm.save_model' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'KernelAdatron.learn' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'KernelAdatron.pred' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'KernelAdatron.margin' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'KernelAdatron.steps' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'KernelAdatron.alpha' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'wavelet.pad' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'wavelet.dwt' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'wavelet.idwt' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'wavelet.uwt' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'wavelet.iuwt' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'wavelet.uwt_align_h2' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'wavelet.uwt_align_d4' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'wavelet.cwt' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'wavelet.icwt' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'wavelet.autoscales' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'wavelet.fourier_from_scales' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'wavelet.scales_from_fourier' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'IRelief' from module 'mlpy'; the following exception was raised: No module named 'mlpy' looking for now-outdated files... none found pickling environment... done checking consistency... /build/reproducible-path/mlpy-3.5.0+ds/docs/source/dim_red.txt:216: WARNING: Citation [Cai08] is not referenced. /build/reproducible-path/mlpy-3.5.0+ds/docs/source/dim_red.txt:218: WARNING: Citation [Mika99] is not referenced. /build/reproducible-path/mlpy-3.5.0+ds/docs/source/dim_red.txt:219: WARNING: Citation [Scholkopf96] is not referenced. /build/reproducible-path/mlpy-3.5.0+ds/docs/source/kernel.txt:140: WARNING: Citation [Scolkopf98] is not referenced. /build/reproducible-path/mlpy-3.5.0+ds/docs/source/lin_regr.txt:137: WARNING: Citation [DeMol08] is not referenced. /build/reproducible-path/mlpy-3.5.0+ds/docs/source/svm.txt:86: WARNING: Citation [Cristianini] is not referenced. /build/reproducible-path/mlpy-3.5.0+ds/docs/source/svm.txt:87: WARNING: Citation [Vapnik95] is not referenced. /build/reproducible-path/mlpy-3.5.0+ds/docs/source/svm.txt:153: WARNING: Citation [Friess] is not referenced. /build/reproducible-path/mlpy-3.5.0+ds/docs/source/svm.txt:154: WARNING: Citation [Kecman03] is not referenced. /build/reproducible-path/mlpy-3.5.0+ds/docs/source/weighting.txt:12: WARNING: Citation [Sun07] is not referenced. done preparing documents... done copying assets... copying downloadable files... [ 50%] data/spiral.data copying downloadable files... [100%] data/iris.csv copying static files... done copying extra files... done done writing output... [ 4%] borda writing output... [ 8%] canberra writing output... [ 12%] cluster writing output... [ 16%] crossval writing output... [ 20%] dim_red writing output... [ 24%] dtw writing output... [ 28%] findpeaks writing output... [ 32%] index writing output... [ 36%] install writing output... [ 40%] intro writing output... [ 44%] kernel writing output... [ 48%] lcs writing output... [ 52%] liblinear writing output... [ 56%] lin_class writing output... [ 60%] lin_regr writing output... [ 64%] metrics writing output... [ 68%] nonlin_class writing output... [ 72%] nonlin_regr writing output... [ 76%] scaling writing output... [ 80%] selection writing output... [ 84%] stats writing output... [ 88%] svm writing output... [ 92%] tutorial writing output... [ 96%] wavelet writing output... [100%] weighting WARNING: dvipng command 'dvipng' cannot be run (needed for math display), check the imgmath_dvipng setting generating indices... genindex py-modindex done highlighting module code... writing additional pages... search done copying images... [ 4%] images/kmeans.png copying images... [ 7%] images/kfda.png copying images... [ 11%] images/pca.png copying images... [ 14%] images/pca2.png copying images... [ 18%] images/fastpca.png copying images... [ 21%] images/kernel_pca.png copying images... [ 25%] images/dtw.png copying images... [ 29%] images/liblinear.png copying images... [ 32%] images/lda_binary.png copying images... [ 36%] images/lda_multi.png copying images... [ 39%] images/perceptron.png copying images... [ 43%] images/elasticnetc.png copying images... [ 46%] images/dlda.png copying images... [ 50%] images/ols.png copying images... [ 54%] images/ridge.png copying images... [ 57%] images/lars_diabetes.png copying images... [ 61%] images/parzen.png copying images... [ 64%] images/knn.png copying images... [ 68%] images/classtree.png copying images... [ 71%] images/mlc.png copying images... [ 75%] images/kernel_ridge.png copying images... [ 79%] images/svm_spiral.png copying images... [ 82%] images/kernel_adatron.png copying images... [ 86%] images/iris_pca.png copying images... [ 89%] images/iris_svm_linear.png copying images... [ 93%] images/iris_svm_gaussian.png copying images... [ 96%] images/iris_svm_poly.png copying images... [100%] images/cwt.png dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 125 warnings. The HTML pages are in build/html. Build finished. The HTML pages are in build/html. sphinx-build -b latex -d build/doctrees source build/latex Running Sphinx v7.2.6 making output directory... done WARNING: html_static_path entry '_static' does not exist loading pickled environment... done [autosummary] generating autosummary for: borda.txt, canberra.txt, cluster.txt, crossval.txt, dim_red.txt, dtw.txt, findpeaks.txt, index.txt, install.txt, intro.txt, ..., metrics.txt, nonlin_class.txt, nonlin_regr.txt, scaling.txt, selection.txt, stats.txt, svm.txt, tutorial.txt, wavelet.txt, weighting.txt building [mo]: targets for 0 po files that are out of date writing output... building [latex]: all documents updating environment: 0 added, 20 changed, 0 removed reading sources... [ 5%] borda reading sources... [ 10%] canberra reading sources... [ 15%] cluster reading sources... [ 20%] crossval reading sources... [ 25%] dim_red reading sources... [ 30%] dtw reading sources... [ 35%] findpeaks reading sources... [ 40%] kernel reading sources... [ 45%] lcs reading sources... [ 50%] liblinear reading sources... [ 55%] lin_class reading sources... [ 60%] lin_regr reading sources... [ 65%] metrics reading sources... [ 70%] nonlin_class reading sources... [ 75%] nonlin_regr reading sources... [ 80%] selection reading sources... [ 85%] stats reading sources... [ 90%] svm reading sources... [ 95%] wavelet reading sources... [100%] weighting WARNING: autodoc: failed to import function 'borda_count' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'canberra' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'canberra_location' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'canberra_location_expected' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'canberra_stability' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'HCluster' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'MFastHCluster' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'cv_kfold' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'cv_random' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'cv_all' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'LDA' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'SRDA' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'KFDA' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'PCA' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'PCAFast' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'KPCA' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'dtw_std' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'dtw_subsequence' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'findpeaks_dist' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'findpeaks_win' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'Kernel' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'KernelLinear' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'KernelPolynomial' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'KernelGaussian' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'KernelExponential' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'KernelSigmoid' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'lcs_std' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'lcs_real' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibLinear.learn' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibLinear.pred' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibLinear.pred_values' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibLinear.pred_probability' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibLinear.w' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibLinear.bias' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibLinear.nfeature' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibLinear.nclasses' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibLinear.labels' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibLinear.load_model' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibLinear.save_model' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'LDAC' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'Perceptron' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'ElasticNetC' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'DLDA' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'Golub' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'ols_base' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'OLS' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'ridge_base' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'Ridge' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'PLS' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'lars_base' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'LARS' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'elasticnet_base' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'ElasticNet' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'error' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'accuracy' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'error_p' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'error_n' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'sensitivity' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'specificity' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'ppv' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'npv' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'mcc' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'auc_wmw' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'mse' from module 'mlpy'; 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the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibSvm.pred_probability' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibSvm.pred_values' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibSvm.labels' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibSvm.nclasses' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibSvm.nsv' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibSvm.label_nsv' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibSvm.load_model' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import method 'LibSvm.save_model' from module 'mlpy'; 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the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import function 'wavelet.scales_from_fourier' from module 'mlpy'; the following exception was raised: No module named 'mlpy' WARNING: autodoc: failed to import class 'IRelief' from module 'mlpy'; the following exception was raised: No module named 'mlpy' looking for now-outdated files... none found pickling environment... done checking consistency... /build/reproducible-path/mlpy-3.5.0+ds/docs/source/dim_red.txt:216: WARNING: Citation [Cai08] is not referenced. /build/reproducible-path/mlpy-3.5.0+ds/docs/source/dim_red.txt:218: WARNING: Citation [Mika99] is not referenced. /build/reproducible-path/mlpy-3.5.0+ds/docs/source/dim_red.txt:219: WARNING: Citation [Scholkopf96] is not referenced. /build/reproducible-path/mlpy-3.5.0+ds/docs/source/kernel.txt:140: WARNING: Citation [Scolkopf98] is not referenced. /build/reproducible-path/mlpy-3.5.0+ds/docs/source/lin_regr.txt:137: WARNING: Citation [DeMol08] is not referenced. /build/reproducible-path/mlpy-3.5.0+ds/docs/source/svm.txt:86: WARNING: Citation [Cristianini] is not referenced. /build/reproducible-path/mlpy-3.5.0+ds/docs/source/svm.txt:87: WARNING: Citation [Vapnik95] is not referenced. /build/reproducible-path/mlpy-3.5.0+ds/docs/source/svm.txt:153: WARNING: Citation [Friess] is not referenced. /build/reproducible-path/mlpy-3.5.0+ds/docs/source/svm.txt:154: WARNING: Citation [Kecman03] is not referenced. /build/reproducible-path/mlpy-3.5.0+ds/docs/source/weighting.txt:12: WARNING: Citation [Sun07] is not referenced. done copying TeX support files... copying TeX support files... done processing mlpy.tex... index install intro tutorial lin_regr lin_class kernel nonlin_regr nonlin_class svm liblinear cluster weighting selection dim_red crossval metrics stats canberra borda findpeaks dtw lcs wavelet scaling resolving references... done writing... done copying images... 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[1] [2] [1] [2] Chapter 1. (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) [3{/usr/share/texmf /fonts/enc/dvips/tex-gyre/q-ts1.enc}] [4] Chapter 2. [5] [6] Chapter 3. (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [7] [8 <./iris_pca .png>] [9 <./iris_svm_linear.png> <./iris_svm_gaussian.png>] [10 <./iris_svm_po ly.png>] Chapter 4. [11] LaTeX Warning: Citation `lin_regr:hoerl70' on page 12 undefined on input line 3 83. [12 <./ols.png>] LaTeX Warning: Citation `lin_regr:efron04' on page 13 undefined on input line 4 18. [13 <./ridge.png>] [14 <./lars_diabetes.png>] [15] [16] Chapter 5. LaTeX Warning: Citation `lin_class:hastie09' on page 17 undefined on input line 483. [17] [18 <./lda_binary.png>] [19 <./lda_multi.png>] [20] LaTeX Warning: Citation `lin_class:hastie09' on page 21 undefined on input line 634. [21 <./perceptron.png>] [22 <./elasticnetc.png>] LaTeX Warning: Hyper reference `liblinear::doc' on page 23 undefined on input l ine 682. LaTeX Warning: Hyper reference `liblinear::doc' on page 23 undefined on input l ine 688. LaTeX Warning: Citation `lin_class:hastie09' on page 23 undefined on input line 694. [23] [24 <./dlda.png>] Chapter 6. [25] [26] [27] [28] Chapter 7. [29] LaTeX Warning: Hyper reference `svm::doc' on page 30 undefined on input line 96 5. [30 <./kernel_ridge.png>] Chapter 8. [31] LaTeX Warning: Hyper reference `svm::doc' on page 32 undefined on input line 10 13. [32 <./parzen.png>] [33 <./knn.png>] [34] Overfull \vbox (1.82964pt too high) detected at line 1189 [35 <./classtree.png>] [36 <./mlc.png>] Chapter 9. [37] [38] [39 <./svm_spiral.png>] [40] [41 <./kernel_adatron.png>] [42] Chapter 10. Underfull \hbox (badness 10000) in paragraph at lines 1438--1443 \T1/qtm/m/n/10 [string] solver, can be one of `l2r_lr', `l2r_l2loss_svc_dual', `l2r_l2loss_svc', Overfull \vbox (0.52196pt too high) detected at line 1505 [43] [44] [45 <./liblinear.png>] [46] Chapter 11. LaTeX Warning: Citation `cluster:amap' on page 47 undefined on input line 1524. LaTeX Warning: Citation `cluster:fastcluster' on page 47 undefined on input lin e 1534. [47] [48 <./kmeans.png>] Chapter 12. [49] [50] Chapter 13. [51] [52] Chapter 14. [53] [54 <./kfda.png>] [55 <./pca.png>] LaTeX Warning: Citation `dim_red:sharma07' on page 56 undefined on input line 1 736. LaTeX Warning: Citation `dim_red:sharma07' on page 56 undefined on input line 1 739. [56 <./pca2.png>] [57 <./fastpca.png>] [58 <./kernel_pca.png>] Chapter 15. [59] [60] Chapter 16. [61] [62] Chapter 17. [63] [64] Chapter 18. LaTeX Warning: Citation `canberra:jurman08' on page 65 undefined on input line 1976. LaTeX Warning: Citation `canberra:jurman08' on page 65 undefined on input line 1988. [65] [66] Chapter 19. [67] [68] Chapter 20. [69] [70] Chapter 21. LaTeX Warning: Citation `dtw:salvador04' on page 71 undefined on input line 201 2. [71 <./dtw.png>] [72] Chapter 22. [73] [74] Chapter 23. LaTeX Warning: Citation `wavelet:gsldwt' on page 75 undefined on input line 206 0. LaTeX Warning: Citation `wavelet:torrence98' on page 75 undefined on input line 2095. [75] [76 <./cwt.png>] Chapter 24. [77] [78{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}] Chapter 25. [79] [80] [81] [82] LaTeX Warning: Reference `index:module-mlpy' on page 83 undefined on input line 2333. LaTeX Warning: Reference `wavelet:module-mlpy.wavelet' on page 83 undefined on input line 2334. [83] No file mlpy.ind. (./mlpy.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `mlpy.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) Output written on mlpy.pdf (87 pages, 1464104 bytes). Transcript written on mlpy.log. Latexmk: Missing input file 'mlpy.toc' (or dependence on it) from following: No file mlpy.toc. Latexmk: Missing input file 'mlpy.ind' (or dependence on it) from following: No file mlpy.ind. Latexmk: Getting log file 'mlpy.log' Latexmk: Examining 'mlpy.fls' Latexmk: Examining 'mlpy.log' Latexmk: Index file 'mlpy.idx' was written Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'mlpy.pdf' Have index file 'mlpy.idx', mlpy.ind mlpy Latexmk: applying rule 'makeindex mlpy.idx'... 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Underfull \hbox (badness 10000) in paragraph at lines 1438--1443 \T1/qtm/m/n/10 [string] solver, can be one of `l2r_lr', `l2r_l2loss_svc_dual', `l2r_l2loss_svc', Overfull \vbox (0.52196pt too high) detected at line 1505 [43] [44] [45 <./liblinear.png>] [46] Chapter 11. [47] [48 <./kmeans.png>] Chapter 12. [49] [50] Chapter 13. [51] [52] Chapter 14. [53] [54 <./kfda.png>] [55 <./pca.png>] [56 <./pca2.png>] [57 <./fastpca.png>] [58 <./kernel_pca.png>] Chapter 15. [59] [60] Chapter 16. [61] [62] Chapter 17. [63] [64] Chapter 18. [65] [66] Chapter 19. [67] [68] Chapter 20. [69] [70] Chapter 21. [71 <./dtw.png>] [72] Chapter 22. [73] [74] Chapter 23. [75] [76 <./cwt.png>] Chapter 24. [77] [78{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}] Chapter 25. [79] [80] [81] [82] LaTeX Warning: Reference `index:module-mlpy' on page 83 undefined on input line 2333. [83] (./mlpy.ind [84] [85]) (./mlpy.aux) LaTeX Warning: There were undefined references. Package rerunfilecheck Warning: File `mlpy.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) Output written on mlpy.pdf (91 pages, 1483433 bytes). Transcript written on mlpy.log. Latexmk: Getting log file 'mlpy.log' Latexmk: Examining 'mlpy.fls' Latexmk: Examining 'mlpy.log' Latexmk: Index file 'mlpy.idx' was written Latexmk: References changed. Latexmk: Log file says output to 'mlpy.pdf' Have index file 'mlpy.idx', mlpy.ind mlpy Latexmk: applying rule 'pdflatex'... 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(/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty)) (./sphinxmessages.sty) Writing index file mlpy.idx (/usr/share/texmf/tex/latex/tex-gyre/t1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./mlpy.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (./mlpy.out) (./mlpy.out) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-e c.enc}] [2] (./mlpy.toc [1] [2] (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd)) [3] [4] [1] [2] Chapter 1. (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) [3{/usr/share/texmf/fonts/enc/d vips/tex-gyre/q-ts1.enc}] [4] Chapter 2. [5] [6] Chapter 3. (/usr/share/texlive/texmf-dist/tex/latex/txfonts/ts1txtt.fd) [7] [8 <./iris_pca .png>] [9 <./iris_svm_linear.png> <./iris_svm_gaussian.png>] [10 <./iris_svm_po ly.png>] Chapter 4. [11] [12 <./ols.png>] [13 <./ridge.png>] [14 <./lars_diabetes.png>] [15] [16] Chapter 5. [17] [18 <./lda_binary.png>] [19 <./lda_multi.png>] [20] [21 <./perceptron.png> ] [22 <./elasticnetc.png>] [23] [24 <./dlda.png>] Chapter 6. [25] [26] [27] [28] Chapter 7. [29] [30 <./kernel_ridge.png>] Chapter 8. [31] [32 <./parzen.png>] [33 <./knn.png>] [34] Overfull \vbox (1.82964pt too high) detected at line 1189 [35 <./classtree.png>] [36 <./mlc.png>] Chapter 9. [37] [38] [39 <./svm_spiral.png>] [40] [41 <./kernel_adatron.png>] [42] Chapter 10. Underfull \hbox (badness 10000) in paragraph at lines 1438--1443 \T1/qtm/m/n/10 [string] solver, can be one of `l2r_lr', `l2r_l2loss_svc_dual', `l2r_l2loss_svc', Overfull \vbox (0.52196pt too high) detected at line 1505 [43] [44] [45 <./liblinear.png>] [46] Chapter 11. [47] [48 <./kmeans.png>] Chapter 12. [49] [50] Chapter 13. [51] [52] Chapter 14. [53] [54 <./kfda.png>] [55 <./pca.png>] [56 <./pca2.png>] [57 <./fastpca.png>] [58 <./kernel_pca.png>] Chapter 15. [59] [60] Chapter 16. [61] [62] Chapter 17. [63] [64] Chapter 18. [65] [66] Chapter 19. [67] [68] Chapter 20. [69] [70] Chapter 21. [71 <./dtw.png>] [72] Chapter 22. [73] [74] Chapter 23. [75] [76 <./cwt.png>] Chapter 24. [77] [78{/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc}] Chapter 25. [79] [80] [81] [82] LaTeX Warning: Reference `index:module-mlpy' on page 83 undefined on input line 2333. [83] (./mlpy.ind [84] [85]) (./mlpy.aux) LaTeX Warning: There were undefined references. ) (see the transcript file for additional information) Output written on mlpy.pdf (91 pages, 1483375 bytes). Transcript written on mlpy.log. Latexmk: ====Undefined refs and citations with line #s in .tex file: Reference `index:module-mlpy' on page 83 undefined on input line 2333 Latexmk: Getting log file 'mlpy.log' Latexmk: Examining 'mlpy.fls' Latexmk: Examining 'mlpy.log' Latexmk: Index file 'mlpy.idx' was written Latexmk: Log file says output to 'mlpy.pdf' Have index file 'mlpy.idx', mlpy.ind mlpy Latexmk: Summary of warnings from last run of *latex: Latex failed to resolve 1 reference(s) Latexmk: All targets (mlpy.pdf) are up-to-date make[2]: Leaving directory '/build/reproducible-path/mlpy-3.5.0+ds/docs/build/latex' rm docs/build/html/_static/jquery.js rm: cannot remove 'docs/build/html/_static/jquery.js': No such file or directory make[1]: [debian/rules:18: override_dh_install] Error 1 (ignored) rm docs/build/html/_static/underscore.js rm: cannot remove 'docs/build/html/_static/underscore.js': No such file or directory make[1]: [debian/rules:19: override_dh_install] Error 1 (ignored) dh_install # move libraries into the python-mlpy-lib package for lib in $(find debian/python3-mlpy/usr -name '*.so'); do \ sdir=$(dirname $lib) ; \ tdir=debian/python3-mlpy-lib/${sdir#*python3-mlpy/} ; \ mkdir -p $tdir ; \ echo "Moving '$lib' into '$tdir'." ; \ mv $lib $tdir ; \ done Moving 'debian/python3-mlpy/usr/lib/python3.12/dist-packages/mlpy/adatron.cpython-312-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.12/dist-packages/mlpy'. Moving 'debian/python3-mlpy/usr/lib/python3.12/dist-packages/mlpy/libml.cpython-312-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.12/dist-packages/mlpy'. Moving 'debian/python3-mlpy/usr/lib/python3.12/dist-packages/mlpy/kmeans.cpython-312-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.12/dist-packages/mlpy'. Moving 'debian/python3-mlpy/usr/lib/python3.12/dist-packages/mlpy/hcluster/chc.cpython-312-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.12/dist-packages/mlpy/hcluster'. Moving 'debian/python3-mlpy/usr/lib/python3.12/dist-packages/mlpy/lcs.cpython-312-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.12/dist-packages/mlpy'. Moving 'debian/python3-mlpy/usr/lib/python3.12/dist-packages/mlpy/findpeaks.cpython-312-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.12/dist-packages/mlpy'. Moving 'debian/python3-mlpy/usr/lib/python3.12/dist-packages/mlpy/dtw.cpython-312-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.12/dist-packages/mlpy'. Moving 'debian/python3-mlpy/usr/lib/python3.12/dist-packages/mlpy/fastcluster/_fastcluster.cpython-312-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.12/dist-packages/mlpy/fastcluster'. Moving 'debian/python3-mlpy/usr/lib/python3.12/dist-packages/mlpy/liblinear.cpython-312-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.12/dist-packages/mlpy'. Moving 'debian/python3-mlpy/usr/lib/python3.12/dist-packages/mlpy/bordacount/cborda.cpython-312-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.12/dist-packages/mlpy/bordacount'. Moving 'debian/python3-mlpy/usr/lib/python3.12/dist-packages/mlpy/canberra.cpython-312-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.12/dist-packages/mlpy'. Moving 'debian/python3-mlpy/usr/lib/python3.12/dist-packages/mlpy/wavelet/_uwt.cpython-312-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.12/dist-packages/mlpy/wavelet'. Moving 'debian/python3-mlpy/usr/lib/python3.12/dist-packages/mlpy/wavelet/_dwt.cpython-312-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.12/dist-packages/mlpy/wavelet'. Moving 'debian/python3-mlpy/usr/lib/python3.12/dist-packages/mlpy/kernel.cpython-312-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.12/dist-packages/mlpy'. Moving 'debian/python3-mlpy/usr/lib/python3.12/dist-packages/mlpy/libsvm.cpython-312-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.12/dist-packages/mlpy'. Moving 'debian/python3-mlpy/usr/lib/python3.12/dist-packages/mlpy/gsl.cpython-312-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.12/dist-packages/mlpy'. Moving 'debian/python3-mlpy/usr/lib/python3.11/dist-packages/mlpy/libsvm.cpython-311-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.11/dist-packages/mlpy'. Moving 'debian/python3-mlpy/usr/lib/python3.11/dist-packages/mlpy/hcluster/chc.cpython-311-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.11/dist-packages/mlpy/hcluster'. Moving 'debian/python3-mlpy/usr/lib/python3.11/dist-packages/mlpy/kmeans.cpython-311-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.11/dist-packages/mlpy'. Moving 'debian/python3-mlpy/usr/lib/python3.11/dist-packages/mlpy/findpeaks.cpython-311-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.11/dist-packages/mlpy'. Moving 'debian/python3-mlpy/usr/lib/python3.11/dist-packages/mlpy/lcs.cpython-311-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.11/dist-packages/mlpy'. Moving 'debian/python3-mlpy/usr/lib/python3.11/dist-packages/mlpy/gsl.cpython-311-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.11/dist-packages/mlpy'. Moving 'debian/python3-mlpy/usr/lib/python3.11/dist-packages/mlpy/canberra.cpython-311-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.11/dist-packages/mlpy'. Moving 'debian/python3-mlpy/usr/lib/python3.11/dist-packages/mlpy/fastcluster/_fastcluster.cpython-311-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.11/dist-packages/mlpy/fastcluster'. Moving 'debian/python3-mlpy/usr/lib/python3.11/dist-packages/mlpy/liblinear.cpython-311-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.11/dist-packages/mlpy'. Moving 'debian/python3-mlpy/usr/lib/python3.11/dist-packages/mlpy/dtw.cpython-311-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.11/dist-packages/mlpy'. Moving 'debian/python3-mlpy/usr/lib/python3.11/dist-packages/mlpy/bordacount/cborda.cpython-311-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.11/dist-packages/mlpy/bordacount'. Moving 'debian/python3-mlpy/usr/lib/python3.11/dist-packages/mlpy/libml.cpython-311-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.11/dist-packages/mlpy'. Moving 'debian/python3-mlpy/usr/lib/python3.11/dist-packages/mlpy/kernel.cpython-311-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.11/dist-packages/mlpy'. Moving 'debian/python3-mlpy/usr/lib/python3.11/dist-packages/mlpy/wavelet/_uwt.cpython-311-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.11/dist-packages/mlpy/wavelet'. Moving 'debian/python3-mlpy/usr/lib/python3.11/dist-packages/mlpy/wavelet/_dwt.cpython-311-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.11/dist-packages/mlpy/wavelet'. Moving 'debian/python3-mlpy/usr/lib/python3.11/dist-packages/mlpy/adatron.cpython-311-arm-linux-gnueabihf.so' into 'debian/python3-mlpy-lib/usr/lib/python3.11/dist-packages/mlpy'. make[1]: Leaving directory '/build/reproducible-path/mlpy-3.5.0+ds' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:302: Cannot find package that provides gsl. Please add package that provides it to Build-Depends or add "gsl python3-gsl" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/mlpy-3.5.0+ds' dh_compress \ --exclude .py \ --exclude .pdf \ --exclude .html \ --exclude .css \ --exclude .jpg \ --exclude .txt \ --exclude .js \ --exclude .json \ --exclude .rtc \ --exclude .par \ --exclude .bin make[1]: Leaving directory '/build/reproducible-path/mlpy-3.5.0+ds' dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/reproducible-path/mlpy-3.5.0+ds' dh_shlibdeps dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/mlpy-3.5.0+ds' dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Provides field of package python3-mlpy: substitution variable ${python3:Provides} used, but is not defined dpkg-gencontrol: warning: Provides field of package python3-mlpy-lib: substitution variable ${python3:Provides} used, but is not defined dpkg-gencontrol: warning: package python-mlpy-doc: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: Provides field of package python3-mlpy-lib: substitution variable ${python3:Provides} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-mlpy' in '../python3-mlpy_3.5.0+ds-3_all.deb'. dpkg-deb: building package 'python3-mlpy-lib' in '../python3-mlpy-lib_3.5.0+ds-3_armhf.deb'. dpkg-deb: building package 'python-mlpy-doc' in '../python-mlpy-doc_3.5.0+ds-3_all.deb'. dpkg-deb: building package 'python3-mlpy-lib-dbgsym' in '../python3-mlpy-lib-dbgsym_3.5.0+ds-3_armhf.deb'. dpkg-genbuildinfo --build=binary -O../mlpy_3.5.0+ds-3_armhf.buildinfo dpkg-genchanges --build=binary -O../mlpy_3.5.0+ds-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/8876 and its subdirectories I: Current time: Mon Apr 22 13:18:13 -12 2024 I: pbuilder-time-stamp: 1713835093 Tue Apr 23 01:18:29 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64c-armhf-rb.debian.net. Tue Apr 23 01:18:29 UTC 2024 I: Preparing to do remote build '2' on virt64c-armhf-rb.debian.net. Tue Apr 23 01:39:56 UTC 2024 I: Deleting $TMPDIR on virt64c-armhf-rb.debian.net. Tue Apr 23 01:39:58 UTC 2024 I: mlpy_3.5.0+ds-3_armhf.changes: Format: 1.8 Date: Mon, 22 Jan 2024 08:12:16 +0100 Source: mlpy Binary: python-mlpy-doc python3-mlpy python3-mlpy-lib python3-mlpy-lib-dbgsym Architecture: all armhf Version: 3.5.0+ds-3 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Andreas Tille Description: python-mlpy-doc - documentation and examples for mlpy python3-mlpy - high-performance Python package for predictive modeling python3-mlpy-lib - low-level implementations and bindings for mlpy Closes: 1054748 1055693 1056819 Changes: mlpy (3.5.0+ds-3) unstable; urgency=medium . * Team upload. . [Yogeswaran Umasankar] * Patch for build issue with Python 3.12. Closes: #1055693, #1054748 . [ Bas Couwenberg ] * Switch to cython3-legacy. Closes: #1056819 . [ Andreas Tille ] * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) Checksums-Sha1: 3ec6baa3054d0c0ca11c18dd68693ebb98ae0ef5 10349 mlpy_3.5.0+ds-3_armhf.buildinfo 8a6147de23ecb6a7f80fa0c935ac6f42ebda847a 2762852 python-mlpy-doc_3.5.0+ds-3_all.deb 1e1707e8390be5b47fbf9930f01eb42a3cf43fb4 2905308 python3-mlpy-lib-dbgsym_3.5.0+ds-3_armhf.deb 5dcf88ca6b753ffaaa27f797deb4fe8ee3398a74 409876 python3-mlpy-lib_3.5.0+ds-3_armhf.deb 36b37d29446fc4f6c5166428f4dfcdfbe06287fc 33436 python3-mlpy_3.5.0+ds-3_all.deb Checksums-Sha256: f8c40de20dd76f45ee6273448ec16851a401dd9a0ff3832b5a4f133c641aed07 10349 mlpy_3.5.0+ds-3_armhf.buildinfo 1e24cbcec0d7cc1b4c7479cb3759384a2aba0c2b6e6a05a6ddcdcf91ed0eb9a1 2762852 python-mlpy-doc_3.5.0+ds-3_all.deb 1154504fdcdb13f32198c450f2211cac3fa240600201187ca80b7fbdc27480c9 2905308 python3-mlpy-lib-dbgsym_3.5.0+ds-3_armhf.deb 2a3b663fbc2d8d72f2e231a2c0f7463207dd8b2ea71a132018259d85c4af2155 409876 python3-mlpy-lib_3.5.0+ds-3_armhf.deb 70c100cfe356f572ede7f29d660fd7d9e8ccd3dbfac1364cb28bdda04984e3cd 33436 python3-mlpy_3.5.0+ds-3_all.deb Files: f5a69f5ad537c883ad5eb9ee464447a9 10349 python optional mlpy_3.5.0+ds-3_armhf.buildinfo cd89aa1e15e1c759d12547a88d390095 2762852 doc optional python-mlpy-doc_3.5.0+ds-3_all.deb 0657ef1706e1f062f5fc667ffbaf1992 2905308 debug optional python3-mlpy-lib-dbgsym_3.5.0+ds-3_armhf.deb 916730fdb11d1686b585508a5471fc8a 409876 python optional python3-mlpy-lib_3.5.0+ds-3_armhf.deb 45d3f95386bc51c9957dab3aaa0aee04 33436 python optional python3-mlpy_3.5.0+ds-3_all.deb Tue Apr 23 01:39:59 UTC 2024 I: diffoscope 265 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_33-12953.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.5aRKLgeE/mlpy_3.5.0+ds-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.5aRKLgeE/mlpy_3.5.0+ds-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.5aRKLgeE/mlpy_3.5.0+ds-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.5aRKLgeE/b1/mlpy_3.5.0+ds-3_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.5aRKLgeE/b2/mlpy_3.5.0+ds-3_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.399s) 0.399s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.086s) 0.086s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 701ms CPU time consumed: 701ms Tue Apr 23 01:40:00 UTC 2024 I: diffoscope 265 found no differences in the changes files, and a .buildinfo file also exists. Tue Apr 23 01:40:00 UTC 2024 I: mlpy from trixie built successfully and reproducibly on armhf. Tue Apr 23 01:40:02 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Apr 23 01:40:02 UTC 2024 I: Submitting 12K b1/mlpy_3.5.0+ds-3_armhf.buildinfo.asc Tue Apr 23 01:40:03 UTC 2024 I: Submitting 12K b2/mlpy_3.5.0+ds-3_armhf.buildinfo.asc Tue Apr 23 01:40:04 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Apr 23 01:40:04 UTC 2024 I: Done submitting .buildinfo files. Tue Apr 23 01:40:04 UTC 2024 I: Removing signed mlpy_3.5.0+ds-3_armhf.buildinfo.asc files: removed './b1/mlpy_3.5.0+ds-3_armhf.buildinfo.asc' removed './b2/mlpy_3.5.0+ds-3_armhf.buildinfo.asc'